0s autopkgtest [03:52:50]: starting date and time: 2024-11-14 03:52:50+0000 0s autopkgtest [03:52:50]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [03:52:50]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zoo359u5/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-treetime --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.9 lxd-armhf-10.145.243.9:autopkgtest/ubuntu/plucky/armhf 51s autopkgtest [03:53:41]: testbed dpkg architecture: armhf 53s autopkgtest [03:53:43]: testbed apt version: 2.9.8 53s autopkgtest [03:53:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 60s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 61s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [991 kB] 61s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 61s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 61s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 61s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [104 kB] 61s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [688 kB] 61s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [5040 B] 61s Fetched 1986 kB in 1s (2336 kB/s) 61s Reading package lists... 79s tee: /proc/self/fd/2: Permission denied 100s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 100s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 100s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 100s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 102s Reading package lists... 102s Reading package lists... 103s Building dependency tree... 103s Reading state information... 105s Calculating upgrade... 106s The following packages were automatically installed and are no longer required: 106s libperl5.38t64 perl-modules-5.38 python3-netifaces 106s Use 'apt autoremove' to remove them. 106s The following NEW packages will be installed: 106s libperl5.40 perl-modules-5.40 python3.13-gdbm systemd-cryptsetup 106s The following packages will be upgraded: 106s apport apport-core-dump-handler base-files base-passwd bash-completion 106s dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info 106s install-info iproute2 libarchive13t64 libatomic1 libattr1 106s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 106s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 106s libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libdb5.3t64 106s libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 libevdev2 106s libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 libgnutls30t64 106s libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common 106s libkeyutils1 libldap-common libldap2 liblocale-gettext-perl libmaxminddb0 106s libmnl0 libnetfilter-conntrack3 libnetplan1 libnewt0.52 libnghttp2-14 106s libnspr4 libnss-systemd libnvme1t64 libpam-systemd libpipeline1 libplymouth5 106s libpng16-16t64 libpopt0 libpython3-stdlib libpython3.12-minimal 106s libpython3.12-stdlib libsgutils2-1.46-2 libssh2-1t64 libstdc++6 106s libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl 106s libtraceevent1 libtraceevent1-plugin libudev1 libudisks2-0 liburcu8t64 106s libutempter0 libuv1t64 libx11-6 libx11-data libxau6 libxmlb2 mawk 106s motd-news-config nano netplan-generator netplan.io openssh-client 106s openssh-server openssh-sftp-server pci.ids perl perl-base plymouth 106s plymouth-theme-ubuntu-text python3 python3-apport python3-certifi 106s python3-cffi-backend python3-configobj python3-gdbm python3-gi python3-idna 106s python3-jaraco.functools python3-json-pointer python3-jsonpatch 106s python3-lazr.restfulclient python3-lazr.uri python3-minimal 106s python3-more-itertools python3-netplan python3-newt python3-oauthlib 106s python3-problem-report python3-typeguard python3-urllib3 python3-wadllib 106s python3-zipp python3.12 python3.12-gdbm python3.12-minimal sg3-utils 106s sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv 106s systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny 106s whiptail xxd 106s 143 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 45.5 MB of archives. 106s After this operation, 43.2 MB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B] 106s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB] 107s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 107s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 107s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 107s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 107s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB] 107s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 107s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 107s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB] 107s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB] 107s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB] 107s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB] 107s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB] 107s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 107s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB] 107s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB] 107s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB] 107s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB] 107s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB] 107s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB] 107s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB] 107s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB] 107s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB] 107s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB] 107s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB] 107s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB] 107s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB] 107s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB] 107s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB] 107s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB] 107s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB] 107s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB] 107s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB] 107s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB] 107s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B] 107s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB] 107s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB] 107s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB] 107s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB] 107s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 107s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 107s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB] 107s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB] 107s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 107s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 107s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 107s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB] 107s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB] 107s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 107s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB] 107s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB] 108s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 108s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB] 108s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB] 108s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB] 108s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB] 108s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB] 108s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 108s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 108s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB] 108s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 108s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 108s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 108s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 108s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB] 108s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 108s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B] 108s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB] 108s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 108s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB] 108s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB] 108s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB] 108s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 108s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB] 108s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB] 108s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 108s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 108s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB] 108s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB] 108s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB] 108s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB] 108s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 108s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 108s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB] 108s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B] 108s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB] 108s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB] 108s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 108s Get:95 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 108s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB] 108s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB] 108s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB] 108s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB] 108s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB] 108s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 108s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB] 108s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 109s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 109s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 109s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB] 109s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 110s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB] 110s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB] 110s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB] 110s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B] 110s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB] 110s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B] 110s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB] 110s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB] 110s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB] 110s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB] 110s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B] 110s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB] 110s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB] 110s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 110s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 110s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 110s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB] 110s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 110s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB] 110s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB] 110s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB] 110s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 110s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B] 110s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 110s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB] 110s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB] 110s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB] 110s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 110s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB] 110s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 110s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB] 110s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 110s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB] 110s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB] 110s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB] 110s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB] 110s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 110s Get:145 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 110s Get:146 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB] 110s Get:147 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB] 111s Preconfiguring packages ... 111s Fetched 45.5 MB in 4s (10.5 MB/s) 111s (Reading database ... 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(0.18+ds-1) ... 124s Setting up libevdev2:armhf (1.13.3+dfsg-1) ... 124s Setting up libldap2:armhf (2.6.8+dfsg-1~exp4ubuntu3) ... 124s Setting up info (7.1.1-1) ... 124s Setting up liblocale-gettext-perl (1.07-7build1) ... 124s Setting up libbpf1:armhf (1:1.5.0-1) ... 124s Setting up libudisks2-0:armhf (2.10.1-11ubuntu1) ... 124s Setting up python3.13-gdbm (3.13.0-2) ... 124s Setting up libpopt0:armhf (1.19+dfsg-2) ... 124s Setting up sg3-utils (1.46-3ubuntu5) ... 124s Setting up python3.12-minimal (3.12.7-3) ... 125s Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... 125s Setting up libblockdev-mdraid3:armhf (3.2.1-1) ... 125s Setting up libblockdev-crypto3:armhf (3.2.1-1) ... 125s Setting up libblockdev-swap3:armhf (3.2.1-1) ... 125s Setting up iproute2 (6.10.0-2ubuntu1) ... 125s Setting up openssh-client (1:9.7p1-7ubuntu5) ... 125s Setting up python3.12 (3.12.7-3) ... 126s Setting up libblockdev-loop3:armhf (3.2.1-1) ... 126s Setting up systemd (256.5-2ubuntu4) ... 127s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 127s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 127s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 127s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 127s Setting up libblockdev3:armhf (3.2.1-1) ... 127s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 127s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 127s Setting up libblockdev-part3:armhf (3.2.1-1) ... 127s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 127s update-initramfs: deferring update (trigger activated) 127s Setting up libperl5.40:armhf (5.40.0-7) ... 127s Setting up perl (5.40.0-7) ... 127s Setting up systemd-cryptsetup (256.5-2ubuntu4) ... 127s Setting up libnvme1t64 (1.11-1) ... 127s Setting up systemd-timesyncd (256.5-2ubuntu4) ... 128s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 128s Setting up udev (256.5-2ubuntu4) ... 129s Setting up libdpkg-perl (1.22.11ubuntu3) ... 129s Setting up libblockdev-nvme3:armhf (3.2.1-1) ... 129s Setting up libdrm2:armhf (2.4.123-1) ... 129s Setting up whiptail (0.52.24-2ubuntu4) ... 129s Setting up libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) ... 129s Setting up libplymouth5:armhf (24.004.60-1ubuntu11) ... 129s Setting up netplan-generator (1.1.1-1) ... 129s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 129s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 129s Setting up systemd-resolved (256.5-2ubuntu4) ... 129s Setting up openssh-sftp-server (1:9.7p1-7ubuntu5) ... 129s Setting up udisks2 (2.10.1-11ubuntu1) ... 129s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 129s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 129s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 129s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 129s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 129s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 129s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 129s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 129s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 129s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 129s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 129s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 129s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied 130s Setting up systemd-sysv (256.5-2ubuntu4) ... 130s Setting up openssh-server (1:9.7p1-7ubuntu5) ... 131s Setting up plymouth (24.004.60-1ubuntu11) ... 131s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 131s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 131s Setting up libfwupd2:armhf (1.9.26-2) ... 131s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ... 131s Setting up python3 (3.12.7-1) ... 132s Setting up python3-zipp (3.21.0-1) ... 132s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 132s Setting up dpkg-dev (1.22.11ubuntu3) ... 132s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ... 132s update-initramfs: deferring update (trigger activated) 132s Setting up python3-oauthlib (3.2.2-2) ... 132s Setting up python3-configobj (5.0.9-1) ... 132s Setting up python3-certifi (2024.8.30+dfsg-1) ... 132s Setting up python3-gi (3.50.0-3) ... 133s Setting up python3-idna (3.8-2) ... 133s Setting up python3-urllib3 (2.0.7-2ubuntu0.1) ... 133s Setting up python3-json-pointer (2.4-2) ... 133s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ... 133s Setting up fwupd (1.9.26-2) ... 134s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 134s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 134s fwupd.service is a disabled or a static unit not running, not starting it. 134s Setting up python3-cffi-backend:armhf (1.17.1-2) ... 134s Setting up python3-more-itertools (10.5.0-1) ... 134s Setting up python3-jaraco.functools (4.1.0-1) ... 134s Setting up python3-gdbm:armhf (3.12.7-1) ... 134s Setting up python3-problem-report (2.30.0-0ubuntu5) ... 134s Setting up ssh-import-id (5.11-0ubuntu3) ... 134s Setting up python3-jsonpatch (1.32-4) ... 134s Setting up python3-typeguard (4.4.1-1) ... 135s Setting up ufw (0.36.2-8) ... 135s Setting up python3-lazr.uri (1.0.6-4) ... 135s Setting up python3-apport (2.30.0-0ubuntu5) ... 136s Setting up python3-wadllib (2.0.0-1) ... 136s Setting up python3-netplan (1.1.1-1) ... 136s Setting up python3-lazr.restfulclient (0.14.6-2) ... 136s Setting up netplan.io (1.1.1-1) ... 136s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ... 137s Setting up apport (2.30.0-0ubuntu5) ... 137s Installing new version of config file /etc/apport/crashdb.conf ... 137s apport-autoreport.service is a disabled or a static unit not running, not starting it. 137s Processing triggers for dbus (1.14.10-4ubuntu5) ... 137s Processing triggers for shared-mime-info (2.4-5) ... 138s Processing triggers for install-info (7.1.1-1) ... 138s Processing triggers for initramfs-tools (0.142ubuntu34) ... 138s Processing triggers for libc-bin (2.40-1ubuntu3) ... 138s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 138s Processing triggers for man-db (2.12.1-3) ... 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 141s The following packages will be REMOVED: 141s libperl5.38t64* perl-modules-5.38* python3-netifaces* 142s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 142s After this operation, 41.7 MB disk space will be freed. 142s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61507 files and directories currently installed.) 142s Removing libperl5.38t64:armhf (5.38.2-5) ... 142s Removing perl-modules-5.38 (5.38.2-5) ... 142s Removing python3-netifaces:armhf (0.11.0-2build3) ... 142s Processing triggers for man-db (2.12.1-3) ... 142s Processing triggers for libc-bin (2.40-1ubuntu3) ... 144s autopkgtest [03:55:14]: rebooting testbed after setup commands that affected boot 213s autopkgtest [03:56:23]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 242s autopkgtest [03:56:52]: @@@@@@@@@@@@@@@@@@@@ apt-source python-treetime 253s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (dsc) [2611 B] 253s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (tar) [5117 kB] 253s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (tar) [1291 kB] 253s Get:4 http://ftpmaster.internal/ubuntu plucky/universe python-treetime 0.11.4-1 (diff) [8028 B] 253s gpgv: Signature made Sat Nov 9 21:31:47 2024 UTC 253s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 253s gpgv: issuer "emollier@debian.org" 253s gpgv: Can't check signature: No public key 253s dpkg-source: warning: cannot verify inline signature for ./python-treetime_0.11.4-1.dsc: no acceptable signature found 254s autopkgtest [03:57:04]: testing package python-treetime version 0.11.4-1 256s autopkgtest [03:57:06]: build not needed 259s autopkgtest [03:57:09]: test run-unit-test: preparing testbed 275s Reading package lists... 275s Building dependency tree... 275s Reading state information... 276s Starting pkgProblemResolver with broken count: 0 276s Starting 2 pkgProblemResolver with broken count: 0 276s Done 277s The following additional packages will be installed: 277s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 277s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 277s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 277s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 277s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 277s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 277s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 277s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 277s python3-brotli python3-cairo python3-contourpy python3-cycler 277s python3-dateutil python3-decorator python3-fonttools python3-freetype 277s python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 277s python3-mpmath python3-numpy python3-packaging python3-pandas 277s python3-pandas-lib python3-pil python3-pil.imagetk python3-reportlab 277s python3-rlpycairo python3-scipy python3-six python3-sympy python3-tk 277s python3-treetime python3-tz python3-ufolib2 python3-unicodedata2 277s python3.12-tk python3.13-tk sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib 277s x11-common xfonts-encodings xfonts-utils xml-core 277s Suggested packages: 277s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 277s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 277s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 277s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 277s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 277s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 277s librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo 277s python3-gobject python3-pyqt5 python3-sip python3-tornado 277s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 277s gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc 277s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 277s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc 277s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg sgml-base-doc 277s debhelper 277s Recommended packages: 277s javascript-common python-biopython-doc ncbi-blast+ python3-bs4 277s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 277s python3-odf python3-openpyxl python3-tables python3-olefile 277s fonts-dejavu-extra g++ | c++-compiler isympy-common 277s The following NEW packages will be installed: 277s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 277s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 277s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 277s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 277s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 277s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 277s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 277s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 277s python3-brotli python3-cairo python3-contourpy python3-cycler 277s python3-dateutil python3-decorator python3-fonttools python3-freetype 277s python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 277s python3-mpmath python3-numpy python3-packaging python3-pandas 277s python3-pandas-lib python3-pil python3-pil.imagetk python3-reportlab 277s python3-rlpycairo python3-scipy python3-six python3-sympy python3-tk 277s python3-treetime python3-tz python3-ufolib2 python3-unicodedata2 277s python3.12-tk python3.13-tk sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib 277s x11-common xfonts-encodings xfonts-utils xml-core 277s 0 upgraded, 87 newly installed, 0 to remove and 0 not upgraded. 277s Need to get 79.3 MB/79.3 MB of archives. 277s After this operation, 289 MB of additional disk space will be used. 277s Get:1 /tmp/autopkgtest.36CJJ8/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [724 B] 277s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB] 277s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [909 kB] 277s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 277s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 277s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 277s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 277s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 277s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 277s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 277s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 278s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 278s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 278s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 278s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 278s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 278s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.15-1 [685 kB] 278s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7build1 [525 kB] 278s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-7build1 [4840 B] 278s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.2.1-1 [171 kB] 278s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 278s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 278s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 278s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 278s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 278s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 278s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 279s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 279s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 279s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 279s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 279s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 279s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 279s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 279s Get:35 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 279s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 279s Get:37 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 279s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 279s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 279s Get:40 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 279s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB] 279s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 279s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 279s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 279s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 279s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 279s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 279s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu1 [150 kB] 279s Get:49 http://ftpmaster.internal/ubuntu plucky/universe armhf python-matplotlib-data all 3.8.3-3 [2928 kB] 279s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf python3-appdirs all 1.4.4-4 [10.9 kB] 279s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 279s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.7-3 [112 kB] 279s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-tk armhf 3.13.0-2 [103 kB] 279s Get:54 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-tk armhf 3.12.7-1 [9752 B] 279s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 10.4.0-1ubuntu1 [8848 B] 279s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 279s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu1 [428 kB] 279s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cairo armhf 1.26.1-2 [114 kB] 279s Get:59 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-freetype all 2.5.1-1 [92.3 kB] 279s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 279s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-reportlab all 4.2.5-1 [1107 kB] 279s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB] 279s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 279s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-biopython armhf 1.84+dfsg-4 [1666 kB] 279s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build2 [321 kB] 279s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.0-2 [192 kB] 279s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B] 279s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf python3-six all 1.16.0-7 [13.1 kB] 279s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dateutil all 2.9.0-2 [80.3 kB] 279s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 279s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 280s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 280s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 280s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB] 280s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2024.1-2 [31.4 kB] 280s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-4 [91.3 kB] 280s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.0-1 [1234 kB] 280s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.0.2+dfsg-1build4 [24.8 kB] 280s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-unicodedata2 armhf 15.1.0+ds-1build1 [361 kB] 280s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB] 280s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.46.0-1build2 [1402 kB] 280s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-2 [57.0 kB] 280s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 280s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib armhf 3.8.3-3 [4500 kB] 280s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-5 [4728 kB] 280s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas all 2.2.3+dfsg-5 [3112 kB] 281s Get:87 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-treetime all 0.11.4-1 [941 kB] 281s Fetched 79.3 MB in 4s (20.4 MB/s) 281s Selecting previously unselected package sgml-base. 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59567 files and directories currently installed.) 281s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 281s Unpacking sgml-base (1.31) ... 281s Selecting previously unselected package libtcl8.6:armhf. 281s Preparing to unpack .../01-libtcl8.6_8.6.15+dfsg-2_armhf.deb ... 281s Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ... 282s Selecting previously unselected package libfreetype6:armhf. 282s Preparing to unpack .../02-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 282s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 282s Selecting previously unselected package fonts-dejavu-mono. 282s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 282s Unpacking fonts-dejavu-mono (2.37-8) ... 282s Selecting previously unselected package fonts-dejavu-core. 282s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 282s Unpacking fonts-dejavu-core (2.37-8) ... 282s Selecting previously unselected package libfontenc1:armhf. 282s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 282s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 282s Selecting previously unselected package x11-common. 282s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu3_all.deb ... 282s Unpacking x11-common (1:7.7+23ubuntu3) ... 282s Selecting previously unselected package xfonts-encodings. 282s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 282s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 282s Selecting previously unselected package xfonts-utils. 282s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_armhf.deb ... 282s Unpacking xfonts-utils (1:7.7+7) ... 282s Selecting previously unselected package fonts-urw-base35. 282s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 282s Unpacking fonts-urw-base35 (20200910-8) ... 282s Selecting previously unselected package fontconfig-config. 282s Preparing to unpack .../10-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 282s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 282s Selecting previously unselected package libfontconfig1:armhf. 282s Preparing to unpack .../11-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 282s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 282s Selecting previously unselected package libxrender1:armhf. 282s Preparing to unpack .../12-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 282s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 282s Selecting previously unselected package libxft2:armhf. 282s Preparing to unpack .../13-libxft2_2.3.6-1build1_armhf.deb ... 282s Unpacking libxft2:armhf (2.3.6-1build1) ... 282s Selecting previously unselected package libxss1:armhf. 282s Preparing to unpack .../14-libxss1_1%3a1.2.3-1build3_armhf.deb ... 282s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 282s Selecting previously unselected package libtk8.6:armhf. 282s Preparing to unpack .../15-libtk8.6_8.6.15-1_armhf.deb ... 282s Unpacking libtk8.6:armhf (8.6.15-1) ... 282s Selecting previously unselected package tk8.6-blt2.5. 282s Preparing to unpack .../16-tk8.6-blt2.5_2.5.3+dfsg-7build1_armhf.deb ... 282s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 282s Selecting previously unselected package blt. 282s Preparing to unpack .../17-blt_2.5.3+dfsg-7build1_armhf.deb ... 282s Unpacking blt (2.5.3+dfsg-7build1) ... 282s Selecting previously unselected package fonts-lyx. 282s Preparing to unpack .../18-fonts-lyx_2.4.2.1-1_all.deb ... 282s Unpacking fonts-lyx (2.4.2.1-1) ... 282s Selecting previously unselected package libblas3:armhf. 282s Preparing to unpack .../19-libblas3_3.12.0-3build2_armhf.deb ... 282s Unpacking libblas3:armhf (3.12.0-3build2) ... 282s Selecting previously unselected package libpixman-1-0:armhf. 282s Preparing to unpack .../20-libpixman-1-0_0.44.0-3_armhf.deb ... 282s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 282s Selecting previously unselected package libxcb-render0:armhf. 282s Preparing to unpack .../21-libxcb-render0_1.17.0-2_armhf.deb ... 282s Unpacking libxcb-render0:armhf (1.17.0-2) ... 282s Selecting previously unselected package libxcb-shm0:armhf. 282s Preparing to unpack .../22-libxcb-shm0_1.17.0-2_armhf.deb ... 282s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 282s Selecting previously unselected package libcairo2:armhf. 282s Preparing to unpack .../23-libcairo2_1.18.2-2_armhf.deb ... 282s Unpacking libcairo2:armhf (1.18.2-2) ... 282s Selecting previously unselected package libdeflate0:armhf. 282s Preparing to unpack .../24-libdeflate0_1.22-1_armhf.deb ... 282s Unpacking libdeflate0:armhf (1.22-1) ... 282s Selecting previously unselected package libgfortran5:armhf. 282s Preparing to unpack .../25-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 282s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 282s Selecting previously unselected package libgomp1:armhf. 282s Preparing to unpack .../26-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 282s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 282s Selecting previously unselected package libgraphite2-3:armhf. 282s Preparing to unpack .../27-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 282s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 282s Selecting previously unselected package libharfbuzz0b:armhf. 282s Preparing to unpack .../28-libharfbuzz0b_10.0.1-1_armhf.deb ... 282s Unpacking libharfbuzz0b:armhf (10.0.1-1) ... 282s Selecting previously unselected package libimagequant0:armhf. 283s Preparing to unpack .../29-libimagequant0_2.18.0-1build1_armhf.deb ... 283s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 283s Selecting previously unselected package libjpeg-turbo8:armhf. 283s Preparing to unpack .../30-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 283s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 283s Selecting previously unselected package libjpeg8:armhf. 283s Preparing to unpack .../31-libjpeg8_8c-2ubuntu11_armhf.deb ... 283s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 283s Selecting previously unselected package libjs-jquery. 283s Preparing to unpack .../32-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 283s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 283s Selecting previously unselected package libjs-jquery-ui. 283s Preparing to unpack .../33-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 283s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 283s Selecting previously unselected package liblapack3:armhf. 283s Preparing to unpack .../34-liblapack3_3.12.0-3build2_armhf.deb ... 283s Unpacking liblapack3:armhf (3.12.0-3build2) ... 283s Selecting previously unselected package liblbfgsb0:armhf. 283s Preparing to unpack .../35-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 283s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 283s Selecting previously unselected package liblcms2-2:armhf. 283s Preparing to unpack .../36-liblcms2-2_2.16-2_armhf.deb ... 283s Unpacking liblcms2-2:armhf (2.16-2) ... 283s Selecting previously unselected package liblerc4:armhf. 283s Preparing to unpack .../37-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 283s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 283s Selecting previously unselected package libqhull-r8.0:armhf. 283s Preparing to unpack .../38-libqhull-r8.0_2020.2-6build1_armhf.deb ... 283s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 283s Selecting previously unselected package libraqm0:armhf. 283s Preparing to unpack .../39-libraqm0_0.10.1-1build1_armhf.deb ... 283s Unpacking libraqm0:armhf (0.10.1-1build1) ... 283s Selecting previously unselected package libsharpyuv0:armhf. 283s Preparing to unpack .../40-libsharpyuv0_1.4.0-0.1_armhf.deb ... 283s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 283s Selecting previously unselected package libjbig0:armhf. 283s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 283s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 283s Selecting previously unselected package libwebp7:armhf. 283s Preparing to unpack .../42-libwebp7_1.4.0-0.1_armhf.deb ... 283s Unpacking libwebp7:armhf (1.4.0-0.1) ... 283s Selecting previously unselected package libtiff6:armhf. 283s Preparing to unpack .../43-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 283s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 283s Selecting previously unselected package libwebpdemux2:armhf. 283s Preparing to unpack .../44-libwebpdemux2_1.4.0-0.1_armhf.deb ... 283s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 283s Selecting previously unselected package libwebpmux3:armhf. 283s Preparing to unpack .../45-libwebpmux3_1.4.0-0.1_armhf.deb ... 283s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 283s Selecting previously unselected package libxslt1.1:armhf. 283s Preparing to unpack .../46-libxslt1.1_1.1.39-0exp1ubuntu1_armhf.deb ... 283s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 283s Selecting previously unselected package python-matplotlib-data. 283s Preparing to unpack .../47-python-matplotlib-data_3.8.3-3_all.deb ... 283s Unpacking python-matplotlib-data (3.8.3-3) ... 283s Selecting previously unselected package python3-appdirs. 283s Preparing to unpack .../48-python3-appdirs_1.4.4-4_all.deb ... 283s Unpacking python3-appdirs (1.4.4-4) ... 283s Selecting previously unselected package python3-numpy. 283s Preparing to unpack .../49-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 283s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 284s Selecting previously unselected package python3.12-tk. 284s Preparing to unpack .../50-python3.12-tk_3.12.7-3_armhf.deb ... 284s Unpacking python3.12-tk (3.12.7-3) ... 284s Selecting previously unselected package python3.13-tk. 284s Preparing to unpack .../51-python3.13-tk_3.13.0-2_armhf.deb ... 284s Unpacking python3.13-tk (3.13.0-2) ... 284s Selecting previously unselected package python3-tk:armhf. 284s Preparing to unpack .../52-python3-tk_3.12.7-1_armhf.deb ... 284s Unpacking python3-tk:armhf (3.12.7-1) ... 284s Selecting previously unselected package python3-pil.imagetk:armhf. 284s Preparing to unpack .../53-python3-pil.imagetk_10.4.0-1ubuntu1_armhf.deb ... 284s Unpacking python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 284s Selecting previously unselected package libopenjp2-7:armhf. 284s Preparing to unpack .../54-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ... 284s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 284s Selecting previously unselected package python3-pil:armhf. 284s Preparing to unpack .../55-python3-pil_10.4.0-1ubuntu1_armhf.deb ... 284s Unpacking python3-pil:armhf (10.4.0-1ubuntu1) ... 284s Selecting previously unselected package python3-cairo. 284s Preparing to unpack .../56-python3-cairo_1.26.1-2_armhf.deb ... 284s Unpacking python3-cairo (1.26.1-2) ... 284s Selecting previously unselected package python3-freetype. 284s Preparing to unpack .../57-python3-freetype_2.5.1-1_all.deb ... 284s Unpacking python3-freetype (2.5.1-1) ... 284s Selecting previously unselected package python3-rlpycairo. 284s Preparing to unpack .../58-python3-rlpycairo_0.3.0-3_all.deb ... 284s Unpacking python3-rlpycairo (0.3.0-3) ... 284s Selecting previously unselected package python3-reportlab. 284s Preparing to unpack .../59-python3-reportlab_4.2.5-1_all.deb ... 284s Unpacking python3-reportlab (4.2.5-1) ... 284s Selecting previously unselected package xml-core. 284s Preparing to unpack .../60-xml-core_0.19_all.deb ... 284s Unpacking xml-core (0.19) ... 284s Selecting previously unselected package w3c-sgml-lib. 284s Preparing to unpack .../61-w3c-sgml-lib_1.3-3_all.deb ... 284s Unpacking w3c-sgml-lib (1.3-3) ... 284s Selecting previously unselected package python3-biopython. 284s Preparing to unpack .../62-python3-biopython_1.84+dfsg-4_armhf.deb ... 284s Unpacking python3-biopython (1.84+dfsg-4) ... 284s Selecting previously unselected package python3-brotli. 284s Preparing to unpack .../63-python3-brotli_1.1.0-2build2_armhf.deb ... 284s Unpacking python3-brotli (1.1.0-2build2) ... 284s Selecting previously unselected package python3-contourpy. 284s Preparing to unpack .../64-python3-contourpy_1.3.0-2_armhf.deb ... 284s Unpacking python3-contourpy (1.3.0-2) ... 284s Selecting previously unselected package python3-cycler. 284s Preparing to unpack .../65-python3-cycler_0.12.1-1_all.deb ... 284s Unpacking python3-cycler (0.12.1-1) ... 284s Selecting previously unselected package python3-six. 284s Preparing to unpack .../66-python3-six_1.16.0-7_all.deb ... 284s Unpacking python3-six (1.16.0-7) ... 284s Selecting previously unselected package python3-dateutil. 284s Preparing to unpack .../67-python3-dateutil_2.9.0-2_all.deb ... 284s Unpacking python3-dateutil (2.9.0-2) ... 284s Selecting previously unselected package python3-decorator. 284s Preparing to unpack .../68-python3-decorator_5.1.1-5_all.deb ... 284s Unpacking python3-decorator (5.1.1-5) ... 284s Selecting previously unselected package python3-scipy. 284s Preparing to unpack .../69-python3-scipy_1.13.1-5_armhf.deb ... 284s Unpacking python3-scipy (1.13.1-5) ... 285s Selecting previously unselected package python3-ufolib2. 285s Preparing to unpack .../70-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 285s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 285s Selecting previously unselected package python3-mpmath. 285s Preparing to unpack .../71-python3-mpmath_1.3.0-1_all.deb ... 285s Unpacking python3-mpmath (1.3.0-1) ... 285s Selecting previously unselected package python3-sympy. 285s Preparing to unpack .../72-python3-sympy_1.13.3-1_all.deb ... 285s Unpacking python3-sympy (1.13.3-1) ... 285s Selecting previously unselected package python3-tz. 285s Preparing to unpack .../73-python3-tz_2024.1-2_all.deb ... 285s Unpacking python3-tz (2024.1-2) ... 285s Selecting previously unselected package python3-fs. 285s Preparing to unpack .../74-python3-fs_2.4.16-4_all.deb ... 285s Unpacking python3-fs (2.4.16-4) ... 285s Selecting previously unselected package python3-lxml:armhf. 286s Preparing to unpack .../75-python3-lxml_5.3.0-1_armhf.deb ... 286s Unpacking python3-lxml:armhf (5.3.0-1) ... 286s Selecting previously unselected package python3-lz4. 286s Preparing to unpack .../76-python3-lz4_4.0.2+dfsg-1build4_armhf.deb ... 286s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 286s Selecting previously unselected package python3-unicodedata2. 286s Preparing to unpack .../77-python3-unicodedata2_15.1.0+ds-1build1_armhf.deb ... 286s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 286s Selecting previously unselected package unicode-data. 286s Preparing to unpack .../78-unicode-data_15.1.0-1_all.deb ... 286s Unpacking unicode-data (15.1.0-1) ... 286s Selecting previously unselected package python3-fonttools. 286s Preparing to unpack .../79-python3-fonttools_4.46.0-1build2_armhf.deb ... 286s Unpacking python3-fonttools (4.46.0-1build2) ... 286s Selecting previously unselected package python3-kiwisolver. 286s Preparing to unpack .../80-python3-kiwisolver_1.4.7-2_armhf.deb ... 286s Unpacking python3-kiwisolver (1.4.7-2) ... 286s Selecting previously unselected package python3-packaging. 286s Preparing to unpack .../81-python3-packaging_24.1-1_all.deb ... 286s Unpacking python3-packaging (24.1-1) ... 286s Selecting previously unselected package python3-matplotlib. 286s Preparing to unpack .../82-python3-matplotlib_3.8.3-3_armhf.deb ... 286s Unpacking python3-matplotlib (3.8.3-3) ... 287s Selecting previously unselected package python3-pandas-lib:armhf. 287s Preparing to unpack .../83-python3-pandas-lib_2.2.3+dfsg-5_armhf.deb ... 287s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-5) ... 287s Selecting previously unselected package python3-pandas. 287s Preparing to unpack .../84-python3-pandas_2.2.3+dfsg-5_all.deb ... 287s Unpacking python3-pandas (2.2.3+dfsg-5) ... 287s Selecting previously unselected package python3-treetime. 287s Preparing to unpack .../85-python3-treetime_0.11.4-1_all.deb ... 287s Unpacking python3-treetime (0.11.4-1) ... 287s Selecting previously unselected package autopkgtest-satdep. 287s Preparing to unpack .../86-1-autopkgtest-satdep.deb ... 287s Unpacking autopkgtest-satdep (0) ... 287s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 287s Setting up liblcms2-2:armhf (2.16-2) ... 287s Setting up libpixman-1-0:armhf (0.44.0-3) ... 287s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 287s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 287s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 287s Setting up python3-lz4 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python3-rlpycairo (0.3.0-3) ... 310s Setting up python3-reportlab (4.2.5-1) ... 311s Setting up python3-fonttools (4.46.0-1build2) ... 312s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 313s Setting up python3-matplotlib (3.8.3-3) ... 314s Processing triggers for libc-bin (2.40-1ubuntu3) ... 314s Processing triggers for man-db (2.12.1-3) ... 315s Processing triggers for sgml-base (1.31) ... 315s Setting up w3c-sgml-lib (1.3-3) ... 343s Setting up python3-biopython (1.84+dfsg-4) ... 344s Setting up python3-treetime (0.11.4-1) ... 344s Setting up autopkgtest-satdep (0) ... 363s (Reading database ... 70329 files and directories currently installed.) 363s Removing autopkgtest-satdep (0) ... 369s autopkgtest [03:58:59]: test run-unit-test: [----------------------- 372s 372s 0.00 -TreeAnc: set-up 372s read alignment from file h3n2_na/h3n2_na_20.fasta with 19 sequences of length 1407 372s read tree from file h3n2_na/h3n2_na_20.nwk with 19 leaves 372s 372s inferring ancestral sequences... 372s ...done. 372s 372s The TOTAL tree length is 1.311e-01 and 183 mutations were observed. 372s Of these 183 mutations, 372s - 148 occur 1 times 372s - 16 occur 2 times 372s - 1 occur 3 times 372s 372s Of the 1407 positions in the genome, 372s - 1237 were hit 0 times (expected 1235.40) 372s - 124 were hit 1 times (expected 160.68) 372s - 25 were hit 2 times (expected 10.45) 372s - 3 were hit 3 times (expected 0.45) 372s 372s log-likelihood difference to Poisson distribution with same mean: -1.226e+01 372s 372s 372s The ten most homoplasic mutations are: 372s mut multiplicity 372s G27A 3 372s A88G 2 372s A267G 2 372s G451R 2 372s G629A 2 372s C763T 2 372s G780A 2 372s C825T 2 372s C891A 2 372s C906T 2 372s homoplasy_scanning ok 373s 373s 0.00 -TreeAnc: set-up 373s 373s Inferred sequence evolution model (saved as 2024-11-14_ancestral/sequence_evolution_model.txt): 373s Substitution rate (mu): 1.0 373s 373s Equilibrium frequencies (pi_i): 373s A: 0.3062 373s C: 0.1925 373s G: 0.2336 373s T: 0.2577 373s -: 0.01 373s 373s Symmetrized rates from j->i (W_ij): 373s A C G T - 373s A 0 0.8311 2.7926 0.4496 1.0287 373s C 0.8311 0 0.577 2.8797 1.0535 373s G 2.7926 0.577 0 0.612 1.0437 373s T 0.4496 2.8797 0.612 0 1.0394 373s - 1.0287 1.0535 1.0437 1.0394 0 373s 373s Actual rates from j->i (Q_ij): 373s A C G T - 373s A 0 0.2545 0.8551 0.1377 0.315 373s C 0.16 0 0.1111 0.5543 0.2028 373s G 0.6523 0.1348 0 0.143 0.2438 373s T 0.1159 0.7421 0.1577 0 0.2678 373s - 0.0103 0.0106 0.0105 0.0104 0 373s 373s 373s --- alignment including ancestral nodes saved as 373s 2024-11-14_ancestral/ancestral_sequences.fasta 373s 373s --- tree saved in nexus format as 373s 2024-11-14_ancestral/annotated_tree.nexus 373s 373s --- tree saved in auspice json format as 373s 2024-11-14_ancestral/auspice_tree.json 373s 373s ancestral_reconstruction ok 376s 376s 0.00 -TreeAnc: set-up 376s 376s Attempting to parse dates... 376s Using column 'name' as name. This needs match the taxon names in the tree!! 376s Using column 'date' as date. 376s 376s 0.00 TreeTime.reroot: with method or node: least-squares 376s 376s 0.01 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 376s 376s 0.03 TreeTime.reroot: with method or node: least-squares 376s 376s 0.03 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 376s 376s 0.05 TreeTime.reroot: with method or node: least-squares 376s 376s 0.05 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 376s 376s Root-Tip-Regression: 376s --rate: 2.826e-03 376s --r^2: 0.98 376s 376s The R^2 value indicates the fraction of variation inroot-to-tip 376s distance explained by the sampling times.Higher values corresponds 376s more clock-like behavior (max 1.0). 376s 376s The rate is the slope of the best fit of the date tothe root-to-tip 376s distance and provides an estimate ofthe substitution rate. The rate 376s needs to be positive!Negative rates suggest an inappropriate root. 376s 376s 376s The estimated rate and tree correspond to a root date: 376s 376s --- root-date: 1996.75 376s 376s 376s --- new tree written to 376s 2024-11-14_clock/rerooted.newick 376s 376s --- wrote dates and root-to-tip distances to 376s 2024-11-14_clock/rtt.csv 376s 376s --- root-to-tip plot saved to 376s 2024-11-14_clock/root_to_tip_regression.pdf 376s temporal_signal ok 382s 382s Attempting to parse dates... 382s Using column 'name' as name. This needs match the taxon names in the tree!! 382s Using column 'date' as date. 382s 382s 0.00 -TreeAnc: set-up 382s 382s 0.11 TreeTime.reroot: with method or node: least-squares 382s 382s 0.11 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 382s 382s 0.14 TreeTime.reroot: with method or node: least-squares 382s 382s 0.14 TreeTime.reroot: rerooting will account for covariance and shared ancestry. 382s 382s 0.25 ###TreeTime.run: INITIAL ROUND 382s 382s 0.90 TreeTime.reroot: with method or node: least-squares 382s 382s 0.90 TreeTime.reroot: rerooting will account for covariance and shared ancestry. 382s 382s 0.92 ###TreeTime.run: rerunning timetree after rerooting 382s 382s 1.63 ###TreeTime.run: ITERATION 1 out of 2 iterations 382s 382s 1.63 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 382s polytomies using the old 'greedy' mode. This is not well suited for large 382s polytomies. Stochastic resolution will become the default in future 382s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 382s keep using the greedy method in the future, run with `--greedy-resolve` 382s 382s 2.33 ###TreeTime.run: CONVERGED 382s 382s 4.28 ###TreeTime.run: FINAL ROUND - confidence estimation via marginal 382s reconstruction 382s 382s Inferred sequence evolution model (saved as 2024-11-14_treetime/sequence_evolution_model.txt): 382s Substitution rate (mu): 1.0 382s 382s Equilibrium frequencies (pi_i): 382s A: 0.3088 382s C: 0.1897 382s G: 0.2335 382s T: 0.2581 382s -: 0.0099 382s 382s Symmetrized rates from j->i (W_ij): 382s A C G T - 382s A 0 0.7003 3.0669 0.2651 0.9742 382s C 0.7003 0 0.3354 3.399 0.999 382s G 3.0669 0.3354 0 0.4258 0.9892 382s T 0.2651 3.399 0.4258 0 0.9848 382s - 0.9742 0.999 0.9892 0.9848 0 382s 382s Actual rates from j->i (Q_ij): 382s A C G T - 382s A 0 0.2163 0.9472 0.0819 0.3009 382s C 0.1328 0 0.0636 0.6448 0.1895 382s G 0.716 0.0783 0 0.0994 0.2309 382s T 0.0684 0.8772 0.1099 0 0.2541 382s - 0.0097 0.0099 0.0098 0.0098 0 382s 382s 382s Inferred sequence evolution model (saved as 2024-11-14_treetime/molecular_clock.txt): 382s Root-Tip-Regression: 382s --rate: 2.644e-03 +/- 3.96e-04 (one std-dev) 382s --chi^2: 8.40 382s --r^2: 0.98 382s 382s --- saved tree as 382s 2024-11-14_treetime/timetree.pdf 382s 382s --- root-to-tip plot saved to 382s 2024-11-14_treetime/root_to_tip_regression.pdf 382s 382s --- alignment including ancestral nodes saved as 382s 2024-11-14_treetime/ancestral_sequences.fasta 382s 382s --- saved divergence times in 382s 2024-11-14_treetime/dates.tsv 382s 382s --- tree saved in nexus format as 382s 2024-11-14_treetime/timetree.nexus 382s 382s --- tree saved in auspice json format as 382s 2024-11-14_treetime/auspice_tree.json 382s 382s --- divergence tree saved in nexus format as 382s 2024-11-14_treetime/divergence_tree.nexus 382s 383s timetree_inference ok 383s /usr/lib/python3/dist-packages/treetime/wrappers.py:587: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 383s weight_dict = {row[0]:row[1] for ri,row in tmp_weights.iterrows() if not np.isnan(row[1])} 384s Using column '#name' as taxon name. This needs to match the taxa in the tree! 384s Assigned discrete traits to 86 out of 86 taxa. 384s 384s 384s Completed mugration model inference of attribute 'country' for zika/zika.nwk 384s 384s Saved inferred mugration model as: 2024-11-14_mugration/GTR.txt 384s Saved annotated tree as: 2024-11-14_mugration/annotated_tree.nexus 384s ---Done! 384s 385s mugration ok 439s 439s Attempting to parse dates... 439s Using column 'strain' as name. This needs match the taxon names in the tree!! 439s Using column 'date' as date. 439s 439s 0.00 -TreeAnc: set-up 439s 439s 6.98 TreeTime.reroot: with method or node: least-squares 439s 439s 6.98 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 439s 439s 7.17 TreeTime.reroot: with method or node: least-squares 439s 439s 7.17 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 439s 439s 8.46 ###TreeTime.run: INITIAL ROUND 439s 439s 16.18 TreeTime.reroot: with method or node: least-squares 439s 439s 16.18 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 439s 439s 16.35 ###TreeTime.run: rerunning timetree after rerooting 439s 439s 24.57 ###TreeTime.run: ITERATION 1 out of 2 iterations 439s 439s 24.58 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 439s polytomies using the old 'greedy' mode. This is not well suited for large 439s polytomies. Stochastic resolution will become the default in future 439s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 439s keep using the greedy method in the future, run with `--greedy-resolve` 439s 439s 35.93 ###TreeTime.run: ITERATION 2 out of 2 iterations 439s 439s 46.61 TreeTime: the following tips have been marked as outliers. Their date 439s constraints were not used. Please remove them from the tree. Their dates 439s have been reset: 439s 439s 46.61 G22619, input date: [2011.0013698630137, 2011.9986301369863], apparent 439s date: 1987.93 439s 439s 46.61 G22703, input date: [2004.0013661202186, 2004.9986338797814], apparent 439s date: 2012.13 439s 439s Inferred sequence evolution model (saved as 2024-11-14-0001_treetime/sequence_evolution_model.txt): 439s Substitution rate (mu): 1.0 439s 439s Equilibrium frequencies (pi_i): 439s A: 0.1669 439s C: 0.3286 439s G: 0.3273 439s T: 0.1669 439s -: 0.0103 439s 439s Symmetrized rates from j->i (W_ij): 439s A C G T - 439s A 0 0.7518 1.6531 0.3126 35.6447 439s C 0.7518 0 0.315 1.4145 35.8248 439s G 1.6531 0.315 0 0.7459 49.3689 439s T 0.3126 1.4145 0.7459 0 32.2857 439s - 35.6447 35.8248 49.3689 32.2857 0 439s 439s Actual rates from j->i (Q_ij): 439s A C G T - 439s A 0 0.1255 0.2759 0.0522 5.9495 439s C 0.247 0 0.1035 0.4648 11.7712 439s G 0.5411 0.1031 0 0.2441 16.1596 439s T 0.0522 0.236 0.1245 0 5.3878 439s - 0.3675 0.3693 0.509 0.3328 0 439s 439s 439s Inferred sequence evolution model (saved as 2024-11-14-0001_treetime/molecular_clock.txt): 439s Root-Tip-Regression: 439s --rate: 1.000e-07 439s --r^2: 0.46 439s 439s --- saved tree as 439s 2024-11-14-0001_treetime/timetree.pdf 439s 439s --- root-to-tip plot saved to 439s 2024-11-14-0001_treetime/root_to_tip_regression.pdf 439s Sites that were constant except for ambiguous bases were made constant 439s by TreeTime. This happened 1343 times. These sites are now excluded 439s from the VCF. 439s 439s ***WARNING: vcf_utils.py 439s 52 sites were found that had no alternative bases. If this data has 439s been run through TreeTime and contains ambiguous bases, try calling 439s get_tree_dict with var_ambigs=True to see if this clears the error. 439s Alternative causes: - Not all sequences in your alignment are in the 439s tree (if you are running TreeTime via commandline this is most likely) 439s - In TreeTime, can be caused by overwriting variants in tips with 439s small branch lengths (debug) These are the positions affected 439s (numbering starts at 0): 439s 46593, 52473, 165918, 304891, 662240, 954864, 954865, 954866, 954867, 439s 963561, 1046706, 1145470, 1321893, 1468105, 1468106, 1512661, 1704463, 439s 1716723, 1743968, 1951837, 2129868, 2215816, 2274543, 2515984, 439s 2580886, 2626512, 2626513, 2626599, 2686156, 2736331, 2823901, 439s 2869282, 2894207, 2911378, 3047997, 3160385, 3314001, 3321447, 439s 3336505, 3461793, 3490408, 3618189, 3734466, 3764813, 3828626, 439s 3842630, 3894439, 3912292, 3913650, 3956227, 4149358, 4183687 439s 439s --- alignment including ancestral nodes saved as 439s 2024-11-14-0001_treetime/ancestral_sequences.vcf 439s 439s --- saved divergence times in 439s 2024-11-14-0001_treetime/dates.tsv 439s 439s --- tree saved in nexus format as 439s 2024-11-14-0001_treetime/timetree.nexus 439s 439s --- tree saved in auspice json format as 439s 2024-11-14-0001_treetime/auspice_tree.json 439s 439s --- divergence tree saved in nexus format as 439s 2024-11-14-0001_treetime/divergence_tree.nexus 439s 439s --- saved detected outliers as 2024-11-14-0001_treetime/outliers.tsv 439s timetree_inference on vcf data ok 568s 568s Attempting to parse dates... 568s Using column 'name' as name. This needs match the taxon names in the tree!! 568s Using column 'date' as date. 568s 568s 0.00 -TreeAnc: set-up 568s 568s 4.23 -WARNING: character U is unknown. Treating it as missing information 568s 568s 18.13 TreeTime.reroot: with method or node: least-squares 568s 568s 18.14 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 568s 568s 18.62 TreeTime.reroot: with method or node: least-squares 568s 568s 18.63 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 568s 568s 27.38 ###TreeTime.run: INITIAL ROUND 568s 568s 38.11 TreeTime.reroot: with method or node: least-squares 568s 568s 38.11 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 568s 568s 38.54 ###TreeTime.run: rerunning timetree after rerooting 568s 568s 53.72 ###TreeTime.run: ITERATION 1 out of 2 iterations 568s 568s 54.66 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 568s polytomies using the old 'greedy' mode. This is not well suited for large 568s polytomies. Stochastic resolution will become the default in future 568s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 568s keep using the greedy method in the future, run with `--greedy-resolve` 568s 568s 78.84 ###TreeTime.run: ITERATION 2 out of 2 iterations 568s 568s 121.67 TreeTime: the following tips have been marked as outliers. Their date 568s constraints were not used. Please remove them from the tree. Their dates 568s have been reset: 568s 568s 121.67 NZG_0393, input date: 2016.24, apparent date: 2015.16 568s 568s 121.67 NZG_0422, input date: 2016.25, apparent date: 2015.16 568s 568s 121.67 NZG_0358, input date: 2016.22, apparent date: 2015.16 568s 568s 121.67 NZG_0381, input date: 2016.23, apparent date: 2015.11 568s 568s 121.67 EM_NG_2016_029417, input date: 2016.22, apparent date: 2015.11 568s 568s 121.67 EM_NG_2016_029364, input date: 2016.21, apparent date: 2015.11 568s 568s 121.67 EM_NG_2016_029366, input date: 2016.21, apparent date: 2015.11 568s 568s 121.67 2607_C2_12916_EMLH, input date: 2015.32, apparent date: 2015.49 568s 568s 121.67 2607_C2_12855_EMLH, input date: 2015.28, apparent date: 2015.49 568s 568s 121.67 1708_C1_13031_EMLH, input date: 2015.38, apparent date: 2015.59 568s 568s 121.67 1507_C1_18650_EMLH, input date: 2015.52, apparent date: 2015.87 568s 568s 121.67 0208_C1_MK10173, input date: 2015.58, apparent date: 2015.87 568s 568s 121.67 1507_C1_18706_EMLH, input date: 2015.53, apparent date: 2015.87 568s 568s 121.67 2208_C2_18659R_EMLH, input date: 2015.52, apparent date: 2016.00 568s 568s 121.67 1507_C1_13268_EMLH, input date: 2015.47, apparent date: 2015.94 568s 568s 121.67 1507_C1_18660_EMLH, input date: 2015.52, apparent date: 2015.94 568s 568s 121.67 1507_C1_18647_EMLH, input date: 2015.52, apparent date: 2015.80 568s 568s 121.67 2208_C2_18642R_EMLH, input date: 2015.51, apparent date: 2015.94 568s 568s 121.67 1507_C1_18636_EMLH, input date: 2015.51, apparent date: 2016.00 568s 568s 121.67 2208_C2_18687R_EMLH, input date: 2015.53, apparent date: 2016.00 568s 568s Inferred sequence evolution model (saved as 2024-11-14-0002_treetime/sequence_evolution_model.txt): 568s Substitution rate (mu): 1.0 568s 568s Equilibrium frequencies (pi_i): 568s A: 0.3139 568s C: 0.2145 568s G: 0.1978 568s T: 0.2638 568s -: 0.01 568s 568s Symmetrized rates from j->i (W_ij): 568s A C G T - 568s A 0 0.3826 2.5279 0.2294 6.7953 568s C 0.3826 0 0.1691 3.5596 12.1794 568s G 2.5279 0.1691 0 0.3724 5.2952 568s T 0.2294 3.5596 0.3724 0 27.7425 568s - 6.7953 12.1794 5.2952 27.7425 0 568s 568s Actual rates from j->i (Q_ij): 568s A C G T - 568s A 0 0.1201 0.7935 0.072 2.1329 568s C 0.0821 0 0.0363 0.7635 2.6124 568s G 0.5001 0.0334 0 0.0737 1.0476 568s T 0.0605 0.9392 0.0983 0 7.3196 568s - 0.0676 0.1212 0.0527 0.2761 0 568s 568s 568s Inferred sequence evolution model (saved as 2024-11-14-0002_treetime/molecular_clock.txt): 568s Root-Tip-Regression: 568s --rate: 7.885e-04 568s --r^2: 0.80 568s 568s Inferred coalescent model 568s Skyline assuming 100.0 gen/year and approximate confidence bounds (+/- 2.000000 standard deviations of the LH) 568s date N_e lower upper 568s 2014.105 2.748e+01 1.169e+01 6.459e+01 568s 2014.194 5.820e+01 3.684e+01 9.193e+01 568s 2014.284 1.260e+02 7.625e+01 2.083e+02 568s 2014.374 7.437e+01 4.557e+01 1.214e+02 568s 2014.464 3.218e+02 2.276e+02 4.551e+02 568s 2014.553 4.757e+02 3.200e+02 7.070e+02 568s 2014.643 7.451e+02 5.082e+02 1.092e+03 568s 2014.733 2.267e+03 1.451e+03 3.541e+03 568s 2014.823 1.372e+03 7.988e+02 2.355e+03 568s 2014.912 1.017e+03 6.132e+02 1.688e+03 568s 2015.002 5.953e+02 3.653e+02 9.701e+02 568s 2015.092 5.834e+02 3.683e+02 9.240e+02 568s 2015.182 4.282e+02 2.690e+02 6.816e+02 568s 2015.271 3.231e+02 1.987e+02 5.254e+02 568s 2015.361 2.706e+02 1.722e+02 4.253e+02 568s 2015.451 1.675e+02 1.036e+02 2.706e+02 568s 2015.541 1.240e+02 7.178e+01 2.143e+02 568s 2015.630 1.464e+02 8.762e+01 2.447e+02 568s 2015.720 7.833e+01 4.142e+01 1.481e+02 568s 2015.810 2.339e+01 8.780e+00 6.231e+01 568s 568s --- written skyline to 2024-11-14-0002_treetime/skyline.tsv 568s 568s --- saved tree as 568s 2024-11-14-0002_treetime/timetree.pdf 568s 568s --- root-to-tip plot saved to 568s 2024-11-14-0002_treetime/root_to_tip_regression.pdf 568s 568s --- alignment including ancestral nodes saved as 568s 2024-11-14-0002_treetime/ancestral_sequences.fasta 568s 568s --- saved divergence times in 568s 2024-11-14-0002_treetime/dates.tsv 568s 568s --- tree saved in nexus format as 568s 2024-11-14-0002_treetime/timetree.nexus 568s 568s --- tree saved in auspice json format as 568s 2024-11-14-0002_treetime/auspice_tree.json 568s 568s --- divergence tree saved in nexus format as 568s 2024-11-14-0002_treetime/divergence_tree.nexus 568s 568s --- saved detected outliers as 2024-11-14-0002_treetime/outliers.tsv 568s skyline approximation ok 600s 600s Attempting to parse dates... 600s Using column 'name' as name. This needs match the taxon names in the tree!! 600s Using column 'date' as date. 600s 600s 0.00 -TreeAnc: set-up 600s 600s 0.06 TreeTime.reroot: with method or node: least-squares 600s 600s 0.07 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 600s 600s 0.67 TreeTime.reroot: with method or node: least-squares 600s 600s 0.67 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 600s 600s 1.12 ###TreeTime.run: INITIAL ROUND 600s 600s 10.19 TreeTime.reroot: with method or node: least-squares 600s 600s 10.20 TreeTime.reroot: rerooting will ignore covariance and shared ancestry. 600s 600s 10.64 ###TreeTime.run: rerunning timetree after rerooting 600s 600s 19.74 ###TreeTime.run: ITERATION 1 out of 2 iterations 600s 600s 19.74 DEPRECATION WARNING. TreeTime.resolve_polytomies: You are resolving 600s polytomies using the old 'greedy' mode. This is not well suited for large 600s polytomies. Stochastic resolution will become the default in future 600s versions. To switch now, rerun with the flag `--stochastic-resolve`. To 600s keep using the greedy method in the future, run with `--greedy-resolve` 600s 600s 28.89 ###TreeTime.run: CONVERGED 600s 600s 28.90 TreeTime: the following tips have been marked as outliers. Their date 600s constraints were not used. Please remove them from the tree. Their dates 600s have been reset: 600s 600s 28.90 NZG_0393, input date: 2016.24, apparent date: 2015.26 600s 600s 28.90 NZG_0422, input date: 2016.25, apparent date: 2015.26 600s 600s 28.90 NZG_0358, input date: 2016.22, apparent date: 2015.26 600s 600s 28.90 EM_NG_2016_029366, input date: 2016.21, apparent date: 2015.19 600s 600s 28.90 EM_NG_2016_029364, input date: 2016.21, apparent date: 2015.19 600s 600s 28.90 EM_NG_2016_029417, input date: 2016.22, apparent date: 2015.19 600s 600s 28.90 NZG_0381, input date: 2016.23, apparent date: 2015.19 600s 600s 28.90 1708_C1_13031_EMLH, input date: 2015.38, apparent date: 2015.40 600s 600s 28.90 1507_C1_18660_EMLH, input date: 2015.52, apparent date: 2015.81 600s 600s 28.90 2208_C2_18642R_EMLH, input date: 2015.51, apparent date: 2015.81 600s 600s 28.90 1507_C1_18636_EMLH, input date: 2015.51, apparent date: 2015.87 600s 600s 28.90 2208_C2_18687R_EMLH, input date: 2015.53, apparent date: 2015.87 600s 600s 28.90 1507_C1_18650_EMLH, input date: 2015.52, apparent date: 2015.74 600s 600s 28.90 1507_C1_13268_EMLH, input date: 2015.47, apparent date: 2015.81 600s 600s 28.90 1507_C1_18647_EMLH, input date: 2015.52, apparent date: 2015.68 600s 600s 28.90 0208_C1_MK10173, input date: 2015.58, apparent date: 2015.74 600s 600s 28.90 1507_C1_18706_EMLH, input date: 2015.53, apparent date: 2015.74 600s 600s 28.90 2208_C2_18659R_EMLH, input date: 2015.52, apparent date: 2015.87 600s 600s Inferred sequence evolution model (saved as 2024-11-14-0003_treetime/sequence_evolution_model.txt): 600s Substitution rate (mu): 1.0 600s 600s Equilibrium frequencies (pi_i): 600s A: 0.2 600s C: 0.2 600s G: 0.2 600s T: 0.2 600s -: 0.2 600s 600s Symmetrized rates from j->i (W_ij): 600s A C G T - 600s A 0 1.25 1.25 1.25 1.25 600s C 1.25 0 1.25 1.25 1.25 600s G 1.25 1.25 0 1.25 1.25 600s T 1.25 1.25 1.25 0 1.25 600s - 1.25 1.25 1.25 1.25 0 600s 600s Actual rates from j->i (Q_ij): 600s A C G T - 600s A 0 0.25 0.25 0.25 0.25 600s C 0.25 0 0.25 0.25 0.25 600s G 0.25 0.25 0 0.25 0.25 600s T 0.25 0.25 0.25 0 0.25 600s - 0.25 0.25 0.25 0.25 0 600s 600s 600s Inferred sequence evolution model (saved as 2024-11-14-0003_treetime/molecular_clock.txt): 600s Root-Tip-Regression: 600s --rate: 8.047e-04 600s --r^2: 0.79 600s 600s --- saved tree as 600s 2024-11-14-0003_treetime/timetree.pdf 600s 600s --- root-to-tip plot saved to 600s 2024-11-14-0003_treetime/root_to_tip_regression.pdf 600s --- saved divergence times in 600s 2024-11-14-0003_treetime/dates.tsv 600s 600s --- tree saved in nexus format as 600s 2024-11-14-0003_treetime/timetree.nexus 600s 600s --- tree saved in auspice json format as 600s 2024-11-14-0003_treetime/auspice_tree.json 600s 600s --- divergence tree saved in nexus format as 600s 2024-11-14-0003_treetime/divergence_tree.nexus 600s 600s --- saved detected outliers as 2024-11-14-0003_treetime/outliers.tsv 601s sequence length only ok 601s All tests passed 601s autopkgtest [04:02:51]: test run-unit-test: -----------------------] 605s autopkgtest [04:02:55]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 605s run-unit-test PASS 609s autopkgtest [04:02:59]: test autodep8-python3: preparing testbed 665s autopkgtest [04:03:55]: testbed dpkg architecture: armhf 667s autopkgtest [04:03:57]: testbed apt version: 2.9.8 667s autopkgtest [04:03:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 675s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 675s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.4 kB] 675s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 675s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [991 kB] 675s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 675s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [104 kB] 675s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [688 kB] 675s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [5040 B] 676s Fetched 1986 kB in 1s (2143 kB/s) 676s Reading package lists... 691s tee: /proc/self/fd/2: Permission denied 713s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 713s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 713s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 713s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 714s Reading package lists... 714s Reading package lists... 714s Building dependency tree... 714s Reading state information... 715s Calculating upgrade... 716s The following packages were automatically installed and are no longer required: 717s libperl5.38t64 perl-modules-5.38 python3-netifaces 717s Use 'apt autoremove' to remove them. 717s The following NEW packages will be installed: 717s libperl5.40 perl-modules-5.40 python3.13-gdbm systemd-cryptsetup 717s The following packages will be upgraded: 717s apport apport-core-dump-handler base-files base-passwd bash-completion 717s dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info 717s install-info iproute2 libarchive13t64 libatomic1 libattr1 717s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 717s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 717s libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libdb5.3t64 717s libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 libevdev2 717s libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 libgnutls30t64 717s libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common 717s libkeyutils1 libldap-common libldap2 liblocale-gettext-perl libmaxminddb0 717s libmnl0 libnetfilter-conntrack3 libnetplan1 libnewt0.52 libnghttp2-14 717s libnspr4 libnss-systemd libnvme1t64 libpam-systemd libpipeline1 libplymouth5 717s libpng16-16t64 libpopt0 libpython3-stdlib libpython3.12-minimal 717s libpython3.12-stdlib libsgutils2-1.46-2 libssh2-1t64 libstdc++6 717s libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl 717s libtraceevent1 libtraceevent1-plugin libudev1 libudisks2-0 liburcu8t64 717s libutempter0 libuv1t64 libx11-6 libx11-data libxau6 libxmlb2 mawk 717s motd-news-config nano netplan-generator netplan.io openssh-client 717s openssh-server openssh-sftp-server pci.ids perl perl-base plymouth 717s plymouth-theme-ubuntu-text python3 python3-apport python3-certifi 717s python3-cffi-backend python3-configobj python3-gdbm python3-gi python3-idna 717s python3-jaraco.functools python3-json-pointer python3-jsonpatch 717s python3-lazr.restfulclient python3-lazr.uri python3-minimal 717s python3-more-itertools python3-netplan python3-newt python3-oauthlib 717s python3-problem-report python3-typeguard python3-urllib3 python3-wadllib 717s python3-zipp python3.12 python3.12-gdbm python3.12-minimal sg3-utils 717s sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv 717s systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny 717s whiptail xxd 717s 143 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 717s Need to get 45.5 MB of archives. 717s After this operation, 43.2 MB of additional disk space will be used. 717s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B] 717s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB] 717s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB] 717s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB] 717s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB] 717s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB] 717s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB] 717s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 717s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 717s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 717s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 717s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB] 717s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 717s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 717s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB] 717s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB] 717s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB] 717s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB] 717s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB] 717s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 717s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB] 717s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB] 717s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB] 717s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB] 717s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB] 717s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB] 717s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB] 717s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB] 717s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB] 717s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB] 717s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB] 717s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB] 717s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB] 717s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB] 717s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB] 717s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB] 717s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB] 717s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB] 717s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB] 717s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB] 718s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B] 718s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB] 718s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB] 718s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB] 718s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB] 718s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 718s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 718s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB] 718s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB] 718s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 718s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 718s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 718s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB] 718s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB] 718s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 718s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB] 718s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB] 718s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 718s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB] 718s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB] 718s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB] 718s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB] 718s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB] 718s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 718s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 718s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB] 718s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 718s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 718s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 718s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 718s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB] 718s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 718s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B] 718s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB] 718s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 718s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB] 718s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB] 718s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB] 718s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 718s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB] 718s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB] 718s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 718s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 718s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB] 718s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB] 718s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB] 718s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB] 718s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 718s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 718s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB] 718s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B] 718s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB] 718s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB] 718s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 718s Get:95 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 718s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB] 718s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB] 718s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB] 718s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB] 718s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB] 718s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 718s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB] 719s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 719s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 719s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 719s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB] 719s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 719s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB] 719s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB] 719s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB] 719s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B] 719s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB] 719s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B] 719s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB] 719s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB] 719s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB] 719s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB] 719s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B] 719s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB] 719s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB] 719s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 719s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 719s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 719s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB] 719s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 719s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB] 719s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB] 719s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB] 719s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 719s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B] 719s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 719s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB] 719s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB] 719s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB] 719s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 719s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB] 719s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 719s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB] 719s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 719s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB] 719s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB] 719s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB] 719s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB] 719s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 719s Get:145 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 719s Get:146 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB] 720s Get:147 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB] 720s Preconfiguring packages ... 720s Fetched 45.5 MB in 4s (12.2 MB/s) 720s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 720s Preparing to unpack .../motd-news-config_13.5ubuntu3_all.deb ... 720s Unpacking motd-news-config (13.5ubuntu3) over (13.3ubuntu6) ... 720s Preparing to unpack .../base-files_13.5ubuntu3_armhf.deb ... 720s Unpacking base-files (13.5ubuntu3) over (13.3ubuntu6) ... 721s Setting up base-files (13.5ubuntu3) ... 721s Installing new version of config file /etc/issue ... 721s Installing new version of config file /etc/issue.net ... 721s Installing new version of config file /etc/lsb-release ... 721s motd-news.service is a disabled or a static unit not running, not starting it. 721s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 721s Preparing to unpack .../dpkg_1.22.11ubuntu3_armhf.deb ... 721s Unpacking dpkg (1.22.11ubuntu3) over (1.22.11ubuntu1) ... 721s Setting up dpkg (1.22.11ubuntu3) ... 722s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 722s Preparing to unpack .../perl_5.40.0-7_armhf.deb ... 722s Unpacking perl (5.40.0-7) over (5.38.2-5) ... 722s Selecting previously unselected package perl-modules-5.40. 722s Preparing to unpack .../perl-modules-5.40_5.40.0-7_all.deb ... 722s Unpacking perl-modules-5.40 (5.40.0-7) ... 722s Selecting previously unselected package libperl5.40:armhf. 722s Preparing to unpack .../libperl5.40_5.40.0-7_armhf.deb ... 722s Unpacking libperl5.40:armhf (5.40.0-7) ... 722s Preparing to unpack .../perl-base_5.40.0-7_armhf.deb ... 722s Unpacking perl-base (5.40.0-7) over (5.38.2-5) ... 723s Setting up perl-base (5.40.0-7) ... 723s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61464 files and directories currently installed.) 723s Preparing to unpack .../liblocale-gettext-perl_1.07-7build1_armhf.deb ... 723s Unpacking liblocale-gettext-perl (1.07-7build1) over (1.07-7) ... 723s Preparing to unpack .../libtext-iconv-perl_1.7-8build4_armhf.deb ... 723s Unpacking libtext-iconv-perl:armhf (1.7-8build4) over (1.7-8build3) ... 723s Preparing to unpack .../libtext-charwidth-perl_0.04-11build4_armhf.deb ... 723s Unpacking libtext-charwidth-perl:armhf (0.04-11build4) over (0.04-11build3) ... 723s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_armhf.deb ... 723s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-9) over (5.3.28+dfsg2-7) ... 723s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-9) ... 723s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61464 files and directories currently installed.) 723s Preparing to unpack .../base-passwd_3.6.5_armhf.deb ... 723s Unpacking base-passwd (3.6.5) over (3.6.4) ... 723s Setting up base-passwd (3.6.5) ... 723s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61465 files and directories currently installed.) 723s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 723s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 723s Setting up python3-minimal (3.12.7-1) ... 723s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61465 files and directories currently installed.) 723s Preparing to unpack .../00-python3_3.12.7-1_armhf.deb ... 723s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 723s Preparing to unpack .../01-tzdata_2024b-1ubuntu2_all.deb ... 723s Unpacking tzdata (2024b-1ubuntu2) over (2024a-4ubuntu1) ... 723s Preparing to unpack .../02-python3.12_3.12.7-3_armhf.deb ... 723s Unpacking python3.12 (3.12.7-3) over (3.12.7-1) ... 724s Preparing to unpack .../03-libpython3.12-stdlib_3.12.7-3_armhf.deb ... 724s Unpacking libpython3.12-stdlib:armhf (3.12.7-3) over (3.12.7-1) ... 724s Preparing to unpack .../04-python3.12-minimal_3.12.7-3_armhf.deb ... 724s Unpacking python3.12-minimal (3.12.7-3) over (3.12.7-1) ... 724s Preparing to unpack .../05-libpython3.12-minimal_3.12.7-3_armhf.deb ... 724s Unpacking libpython3.12-minimal:armhf (3.12.7-3) over (3.12.7-1) ... 724s Preparing to unpack .../06-libpython3-stdlib_3.12.7-1_armhf.deb ... 724s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 724s Preparing to unpack .../07-libnss-systemd_256.5-2ubuntu4_armhf.deb ... 724s Unpacking libnss-systemd:armhf (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 724s Preparing to unpack .../08-systemd-timesyncd_256.5-2ubuntu4_armhf.deb ... 724s Unpacking systemd-timesyncd (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 724s Preparing to unpack .../09-systemd-resolved_256.5-2ubuntu4_armhf.deb ... 724s Unpacking systemd-resolved (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 724s Preparing to unpack .../10-libsystemd-shared_256.5-2ubuntu4_armhf.deb ... 724s Unpacking libsystemd-shared:armhf (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 724s Preparing to unpack .../11-libsystemd0_256.5-2ubuntu4_armhf.deb ... 724s Unpacking libsystemd0:armhf (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 724s Setting up libsystemd0:armhf (256.5-2ubuntu4) ... 724s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61464 files and directories currently installed.) 724s Preparing to unpack .../systemd-sysv_256.5-2ubuntu4_armhf.deb ... 724s Unpacking systemd-sysv (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 724s Preparing to unpack .../libpam-systemd_256.5-2ubuntu4_armhf.deb ... 724s Unpacking libpam-systemd:armhf (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 724s Preparing to unpack .../systemd_256.5-2ubuntu4_armhf.deb ... 724s Unpacking systemd (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 725s Preparing to unpack .../udev_256.5-2ubuntu4_armhf.deb ... 725s Unpacking udev (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 725s Preparing to unpack .../libudev1_256.5-2ubuntu4_armhf.deb ... 725s Unpacking libudev1:armhf (256.5-2ubuntu4) over (256.5-2ubuntu3) ... 725s Setting up libudev1:armhf (256.5-2ubuntu4) ... 725s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61464 files and directories currently installed.) 725s Preparing to unpack .../0-python3-problem-report_2.30.0-0ubuntu5_all.deb ... 725s Unpacking python3-problem-report (2.30.0-0ubuntu5) over (2.30.0-0ubuntu4) ... 725s Preparing to unpack .../1-python3-apport_2.30.0-0ubuntu5_all.deb ... 725s Unpacking python3-apport (2.30.0-0ubuntu5) over (2.30.0-0ubuntu4) ... 725s Preparing to unpack .../2-python3-gi_3.50.0-3_armhf.deb ... 725s Unpacking python3-gi (3.50.0-3) over (3.48.2-1) ... 725s Preparing to unpack .../3-apport-core-dump-handler_2.30.0-0ubuntu5_all.deb ... 725s Unpacking apport-core-dump-handler (2.30.0-0ubuntu5) over (2.30.0-0ubuntu4) ... 725s Preparing to unpack .../4-apport_2.30.0-0ubuntu5_all.deb ... 725s Unpacking apport (2.30.0-0ubuntu5) over (2.30.0-0ubuntu4) ... 726s Preparing to unpack .../5-libbsd0_0.12.2-2_armhf.deb ... 726s Unpacking libbsd0:armhf (0.12.2-2) over (0.12.2-1) ... 726s Setting up libbsd0:armhf (0.12.2-2) ... 726s (Reading database ... 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.../73-libinih1_58-1ubuntu1_armhf.deb ... 730s Unpacking libinih1:armhf (58-1ubuntu1) over (55-1ubuntu2) ... 730s Preparing to unpack .../74-libldap-common_2.6.8+dfsg-1~exp4ubuntu3_all.deb ... 730s Unpacking libldap-common (2.6.8+dfsg-1~exp4ubuntu3) over (2.6.8+dfsg-1~exp4ubuntu1) ... 730s Preparing to unpack .../75-libldap2_2.6.8+dfsg-1~exp4ubuntu3_armhf.deb ... 730s Unpacking libldap2:armhf (2.6.8+dfsg-1~exp4ubuntu3) over (2.6.8+dfsg-1~exp4ubuntu1) ... 730s Preparing to unpack .../76-libnspr4_2%3a4.35-1.1ubuntu2_armhf.deb ... 730s Unpacking libnspr4:armhf (2:4.35-1.1ubuntu2) over (2:4.35-1.1ubuntu1) ... 730s Preparing to unpack .../77-libsgutils2-1.46-2_1.46-3ubuntu5_armhf.deb ... 730s Unpacking libsgutils2-1.46-2:armhf (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 730s Preparing to unpack .../78-libssh2-1t64_1.11.1-1_armhf.deb ... 730s Unpacking libssh2-1t64:armhf (1.11.1-1) over (1.11.0-7) ... 730s Preparing to unpack .../79-udisks2_2.10.1-11ubuntu1_armhf.deb ... 730s Unpacking udisks2 (2.10.1-11ubuntu1) over (2.10.1-9ubuntu2) ... 731s Preparing to unpack .../80-libudisks2-0_2.10.1-11ubuntu1_armhf.deb ... 731s Unpacking libudisks2-0:armhf (2.10.1-11ubuntu1) over (2.10.1-9ubuntu2) ... 731s Preparing to unpack .../81-libutempter0_1.2.1-4_armhf.deb ... 731s Unpacking libutempter0:armhf (1.2.1-4) over (1.2.1-3build1) ... 731s Preparing to unpack .../82-python3-certifi_2024.8.30+dfsg-1_all.deb ... 731s Unpacking python3-certifi (2024.8.30+dfsg-1) over (2024.6.2-1) ... 731s Preparing to unpack .../83-python3-configobj_5.0.9-1_all.deb ... 731s Unpacking python3-configobj (5.0.9-1) over (5.0.8-3) ... 731s Preparing to unpack .../84-python3-idna_3.8-2_all.deb ... 731s Unpacking python3-idna (3.8-2) over (3.6-2.1) ... 731s Preparing to unpack .../85-python3-more-itertools_10.5.0-1_all.deb ... 731s Unpacking python3-more-itertools (10.5.0-1) over (10.3.0-1) ... 731s Preparing to unpack .../86-python3-jaraco.functools_4.1.0-1_all.deb ... 731s Unpacking python3-jaraco.functools (4.1.0-1) over (4.0.2-1) ... 731s Preparing to unpack .../87-python3-json-pointer_2.4-2_all.deb ... 731s Unpacking python3-json-pointer (2.4-2) over (2.0-0ubuntu1) ... 731s Preparing to unpack .../88-python3-jsonpatch_1.32-4_all.deb ... 731s Unpacking python3-jsonpatch (1.32-4) over (1.32-3) ... 731s Preparing to unpack .../89-python3-lazr.uri_1.0.6-4_all.deb ... 731s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ... 731s Preparing to unpack .../90-python3-wadllib_2.0.0-1_all.deb ... 731s Unpacking python3-wadllib (2.0.0-1) over (1.3.6-5) ... 732s Preparing to unpack .../91-python3-oauthlib_3.2.2-2_all.deb ... 732s Unpacking python3-oauthlib (3.2.2-2) over (3.2.2-1) ... 732s Preparing to unpack .../92-python3-lazr.restfulclient_0.14.6-2_all.deb ... 732s Unpacking python3-lazr.restfulclient (0.14.6-2) over (0.14.6-1) ... 732s Preparing to unpack .../93-python3-typeguard_4.4.1-1_all.deb ... 732s Unpacking python3-typeguard (4.4.1-1) over (4.3.0-1) ... 732s Preparing to unpack .../94-python3-urllib3_2.0.7-2ubuntu0.1_all.deb ... 732s Unpacking python3-urllib3 (2.0.7-2ubuntu0.1) over (2.0.7-2) ... 732s Preparing to unpack .../95-python3-zipp_3.21.0-1_all.deb ... 732s Unpacking python3-zipp (3.21.0-1) over (3.20.0-1) ... 732s Preparing to unpack .../96-sg3-utils_1.46-3ubuntu5_armhf.deb ... 732s Unpacking sg3-utils (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 732s Preparing to unpack .../97-sg3-utils-udev_1.46-3ubuntu5_all.deb ... 732s Unpacking sg3-utils-udev (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 732s Selecting previously unselected package systemd-cryptsetup. 732s Preparing to unpack .../98-systemd-cryptsetup_256.5-2ubuntu4_armhf.deb ... 732s Unpacking systemd-cryptsetup (256.5-2ubuntu4) ... 732s Preparing to unpack .../99-ssh-import-id_5.11-0ubuntu3_all.deb ... 732s Unpacking ssh-import-id (5.11-0ubuntu3) over (5.11-0ubuntu2) ... 732s Setting up libpipeline1:armhf (1.5.8-1) ... 732s Setting up motd-news-config (13.5ubuntu3) ... 732s Setting up libtext-iconv-perl:armhf (1.7-8build4) ... 732s Setting up libtext-charwidth-perl:armhf (0.04-11build4) ... 732s Setting up liburcu8t64:armhf (0.14.1-1) ... 732s Setting up libxau6:armhf (1:1.0.11-1) ... 732s Setting up libkeyutils1:armhf (1.6.3-4ubuntu2) ... 732s Setting up pci.ids (0.0~2024.10.24-1) ... 732s Setting up libnewt0.52:armhf (0.52.24-2ubuntu4) ... 732s Setting up distro-info-data (0.63) ... 732s Setting up libfastjson4:armhf (1.2304.0-2) ... 732s Setting up libinih1:armhf (58-1ubuntu1) ... 732s Setting up libmaxminddb0:armhf (1.11.0-1) ... 732s Setting up python3.12-gdbm (3.12.7-3) ... 732s Setting up libxmlb2:armhf (0.3.21-1) ... 732s Setting up libedit2:armhf (3.1-20240808-1) ... 732s Setting up libuv1t64:armhf (1.48.0-7) ... 732s Setting up libpython3.12-minimal:armhf (3.12.7-3) ... 732s Setting up libnghttp2-14:armhf (1.64.0-1) ... 732s Setting up libsgutils2-1.46-2:armhf (1.46-3ubuntu5) ... 732s Setting up libnetplan1:armhf (1.1.1-1) ... 732s Setting up libldap-common (2.6.8+dfsg-1~exp4ubuntu3) ... 732s Setting up usbutils (1:018-1) ... 732s Setting up xxd (2:9.1.0777-1ubuntu1) ... 732s Setting up libelf1t64:armhf (0.192-4) ... 732s Setting up libdw1t64:armhf (0.192-4) ... 732s Setting up tzdata (2024b-1ubuntu2) ... 732s 732s Current default time zone: 'Etc/UTC' 732s Local time is now: Thu Nov 14 04:05:02 UTC 2024. 732s Universal Time is now: Thu Nov 14 04:05:02 UTC 2024. 732s Run 'dpkg-reconfigure tzdata' if you wish to change it. 732s 732s Setting up libftdi1-2:armhf (1.5-7) ... 732s Setting up libflashrom1:armhf (1.4.0-3ubuntu1) ... 732s Setting up vim-common (2:9.1.0777-1ubuntu1) ... 732s Installing new version of config file /etc/vim/vimrc ... 732s Setting up libx11-data (2:1.8.10-2) ... 732s Setting up libnspr4:armhf (2:4.35-1.1ubuntu2) ... 732s Setting up bash-completion (1:2.14.0-2) ... 732s Setting up libbytesize-common (2.11-1ubuntu1) ... 732s Setting up libblockdev-utils3:armhf (3.2.1-1) ... 732s Setting up libpng16-16t64:armhf (1.6.44-2) ... 732s Setting up libmnl0:armhf (1.0.5-3) ... 732s Setting up libatomic1:armhf (14.2.0-8ubuntu1) ... 732s Setting up libsystemd-shared:armhf (256.5-2ubuntu4) ... 732s Setting up dhcpcd-base (1:10.1.0-2) ... 732s Setting up libutempter0:armhf (1.2.1-4) ... 732s Setting up nano (8.2-1) ... 733s Setting up libblockdev-fs3:armhf (3.2.1-1) ... 733s Setting up perl-modules-5.40 (5.40.0-7) ... 733s Setting up libnetfilter-conntrack3:armhf (1.1.0-1) ... 733s Setting up libtraceevent1:armhf (1:1.8.3-1ubuntu1) ... 733s Setting up libx11-6:armhf (2:1.8.10-2) ... 733s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 733s Setting up mawk (1.3.4.20240905-1) ... 733s Setting up libbytesize1:armhf (2.11-1ubuntu1) ... 733s Setting up libgpgme11t64:armhf (1.23.2-5ubuntu4) ... 733s Setting up libssh2-1t64:armhf (1.11.1-1) ... 733s Setting up libdrm-common (2.4.123-1) ... 733s Setting up libarchive13t64:armhf (3.7.4-1.1) ... 733s Setting up libjson-c5:armhf (0.18+ds-1) ... 733s Setting up libevdev2:armhf (1.13.3+dfsg-1) ... 733s Setting up libldap2:armhf (2.6.8+dfsg-1~exp4ubuntu3) ... 733s Setting up info (7.1.1-1) ... 733s Setting up liblocale-gettext-perl (1.07-7build1) ... 733s Setting up libbpf1:armhf (1:1.5.0-1) ... 733s Setting up libudisks2-0:armhf (2.10.1-11ubuntu1) ... 733s Setting up python3.13-gdbm (3.13.0-2) ... 733s Setting up libpopt0:armhf (1.19+dfsg-2) ... 733s Setting up sg3-utils (1.46-3ubuntu5) ... 733s Setting up python3.12-minimal (3.12.7-3) ... 733s Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... 733s Setting up libblockdev-mdraid3:armhf (3.2.1-1) ... 733s Setting up libblockdev-crypto3:armhf (3.2.1-1) ... 733s Setting up libblockdev-swap3:armhf (3.2.1-1) ... 733s Setting up iproute2 (6.10.0-2ubuntu1) ... 734s Setting up openssh-client (1:9.7p1-7ubuntu5) ... 734s Setting up python3.12 (3.12.7-3) ... 735s Setting up libblockdev-loop3:armhf (3.2.1-1) ... 735s Setting up systemd (256.5-2ubuntu4) ... 735s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 735s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 735s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 735s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 735s Setting up libblockdev3:armhf (3.2.1-1) ... 735s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 735s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 736s Setting up libblockdev-part3:armhf (3.2.1-1) ... 736s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 736s update-initramfs: deferring update (trigger activated) 736s Setting up libperl5.40:armhf (5.40.0-7) ... 736s Setting up perl (5.40.0-7) ... 736s Setting up systemd-cryptsetup (256.5-2ubuntu4) ... 736s Setting up libnvme1t64 (1.11-1) ... 736s Setting up systemd-timesyncd (256.5-2ubuntu4) ... 736s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 736s Setting up udev (256.5-2ubuntu4) ... 737s Setting up libdpkg-perl (1.22.11ubuntu3) ... 737s Setting up libblockdev-nvme3:armhf (3.2.1-1) ... 737s Setting up libdrm2:armhf (2.4.123-1) ... 737s Setting up whiptail (0.52.24-2ubuntu4) ... 737s Setting up libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) ... 737s Setting up libplymouth5:armhf (24.004.60-1ubuntu11) ... 737s Setting up netplan-generator (1.1.1-1) ... 737s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 737s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 737s Setting up systemd-resolved (256.5-2ubuntu4) ... 737s Setting up openssh-sftp-server (1:9.7p1-7ubuntu5) ... 737s Setting up udisks2 (2.10.1-11ubuntu1) ... 737s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 737s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 737s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 737s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 737s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 737s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 737s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 737s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 737s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 737s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 737s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 737s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 737s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied 738s Setting up systemd-sysv (256.5-2ubuntu4) ... 738s Setting up openssh-server (1:9.7p1-7ubuntu5) ... 739s Setting up plymouth (24.004.60-1ubuntu11) ... 739s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 739s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 739s Setting up libfwupd2:armhf (1.9.26-2) ... 739s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ... 739s Setting up python3 (3.12.7-1) ... 740s Setting up python3-zipp (3.21.0-1) ... 740s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 740s Setting up dpkg-dev (1.22.11ubuntu3) ... 740s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ... 740s update-initramfs: deferring update (trigger activated) 740s Setting up python3-oauthlib (3.2.2-2) ... 740s Setting up python3-configobj (5.0.9-1) ... 740s Setting up python3-certifi (2024.8.30+dfsg-1) ... 740s Setting up python3-gi (3.50.0-3) ... 741s Setting up python3-idna (3.8-2) ... 741s Setting up python3-urllib3 (2.0.7-2ubuntu0.1) ... 741s Setting up python3-json-pointer (2.4-2) ... 741s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ... 741s Setting up fwupd (1.9.26-2) ... 742s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 742s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 742s fwupd.service is a disabled or a static unit not running, not starting it. 742s Setting up python3-cffi-backend:armhf (1.17.1-2) ... 742s Setting up python3-more-itertools (10.5.0-1) ... 742s Setting up python3-jaraco.functools (4.1.0-1) ... 742s Setting up python3-gdbm:armhf (3.12.7-1) ... 742s Setting up python3-problem-report (2.30.0-0ubuntu5) ... 742s Setting up ssh-import-id (5.11-0ubuntu3) ... 742s Setting up python3-jsonpatch (1.32-4) ... 743s Setting up python3-typeguard (4.4.1-1) ... 743s Setting up ufw (0.36.2-8) ... 744s Setting up python3-lazr.uri (1.0.6-4) ... 744s Setting up python3-apport (2.30.0-0ubuntu5) ... 744s Setting up python3-wadllib (2.0.0-1) ... 744s Setting up python3-netplan (1.1.1-1) ... 744s Setting up python3-lazr.restfulclient (0.14.6-2) ... 744s Setting up netplan.io (1.1.1-1) ... 744s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ... 745s Setting up apport (2.30.0-0ubuntu5) ... 745s Installing new version of config file /etc/apport/crashdb.conf ... 746s apport-autoreport.service is a disabled or a static unit not running, not starting it. 746s Processing triggers for dbus (1.14.10-4ubuntu5) ... 746s Processing triggers for shared-mime-info (2.4-5) ... 746s Processing triggers for install-info (7.1.1-1) ... 747s Processing triggers for initramfs-tools (0.142ubuntu34) ... 747s Processing triggers for libc-bin (2.40-1ubuntu3) ... 747s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 747s Processing triggers for man-db (2.12.1-3) ... 747s Reading package lists... 748s Building dependency tree... 748s Reading state information... 748s The following packages will be REMOVED: 748s libperl5.38t64* perl-modules-5.38* python3-netifaces* 749s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 749s After this operation, 41.7 MB disk space will be freed. 749s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61507 files and directories currently installed.) 749s Removing libperl5.38t64:armhf (5.38.2-5) ... 749s Removing perl-modules-5.38 (5.38.2-5) ... 749s Removing python3-netifaces:armhf (0.11.0-2build3) ... 749s Processing triggers for man-db (2.12.1-3) ... 749s Processing triggers for libc-bin (2.40-1ubuntu3) ... 752s autopkgtest [04:05:22]: rebooting testbed after setup commands that affected boot 863s Reading package lists... 863s Building dependency tree... 863s Reading state information... 863s Starting pkgProblemResolver with broken count: 0 863s Starting 2 pkgProblemResolver with broken count: 0 863s Done 864s The following additional packages will be installed: 864s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 864s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 864s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 864s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 864s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 864s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 864s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 864s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 864s python-matplotlib-data python3-all python3-appdirs python3-biopython 864s python3-brotli python3-cairo python3-contourpy python3-cycler 864s python3-dateutil python3-decorator python3-fonttools python3-freetype 864s python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 864s python3-mpmath python3-numpy python3-packaging python3-pandas 864s python3-pandas-lib python3-pil python3-pil.imagetk python3-reportlab 864s python3-rlpycairo python3-scipy python3-six python3-sympy python3-tk 864s python3-treetime python3-tz python3-ufolib2 python3.12-tk python3.13 864s python3.13-minimal python3.13-tk sgml-base tk8.6-blt2.5 unicode-data 864s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 864s Suggested packages: 864s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 864s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 864s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 864s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 864s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 864s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 864s librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi-cairo 864s python3-gobject python3-pyqt5 python3-sip python3-tornado 864s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 864s gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc 864s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 864s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc 864s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.13-venv 864s python3.13-doc binfmt-support sgml-base-doc debhelper 864s Recommended packages: 864s javascript-common python-biopython-doc ncbi-blast+ python3-bs4 864s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 864s python3-odf python3-openpyxl python3-tables python3-olefile 864s fonts-dejavu-extra g++ | c++-compiler isympy-common 864s The following NEW packages will be installed: 864s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 864s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 864s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 864s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 864s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 864s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 864s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 864s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 864s python-matplotlib-data python3-all python3-appdirs python3-biopython 864s python3-brotli python3-cairo python3-contourpy python3-cycler 864s python3-dateutil python3-decorator python3-fonttools python3-freetype 864s python3-fs python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 864s python3-mpmath python3-numpy python3-packaging python3-pandas 864s python3-pandas-lib python3-pil python3-pil.imagetk python3-reportlab 864s python3-rlpycairo python3-scipy python3-six python3-sympy python3-tk 864s python3-treetime python3-tz python3-ufolib2 python3.12-tk python3.13 864s python3.13-minimal python3.13-tk sgml-base tk8.6-blt2.5 unicode-data 864s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 864s 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 864s Need to get 84.4 MB/84.4 MB of archives. 864s After this operation, 307 MB of additional disk space will be used. 864s Get:1 /tmp/autopkgtest.36CJJ8/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [712 B] 864s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 865s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 865s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB] 865s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [909 kB] 865s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 865s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 866s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 866s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 866s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 866s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 866s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 866s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 867s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 867s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 867s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 867s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 867s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 867s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.15-1 [685 kB] 867s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7build1 [525 kB] 867s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-7build1 [4840 B] 867s Get:22 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.2.1-1 [171 kB] 867s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 867s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 867s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 867s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 867s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 867s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 867s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 867s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 867s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 867s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 867s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 867s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 867s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 867s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 867s Get:37 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 867s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 867s Get:39 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 867s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 867s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 867s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 867s Get:43 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 867s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB] 867s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 867s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 867s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 867s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 867s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 867s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 867s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu1 [150 kB] 867s Get:52 http://ftpmaster.internal/ubuntu plucky/universe armhf python-matplotlib-data all 3.8.3-3 [2928 kB] 868s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 868s Get:54 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 868s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf python3-appdirs all 1.4.4-4 [10.9 kB] 868s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 868s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.7-3 [112 kB] 868s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-tk armhf 3.13.0-2 [103 kB] 868s Get:59 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-tk armhf 3.12.7-1 [9752 B] 868s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 10.4.0-1ubuntu1 [8848 B] 868s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 868s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu1 [428 kB] 868s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cairo armhf 1.26.1-2 [114 kB] 868s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-freetype all 2.5.1-1 [92.3 kB] 868s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 868s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-reportlab all 4.2.5-1 [1107 kB] 868s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB] 868s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 868s Get:69 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-biopython armhf 1.84+dfsg-4 [1666 kB] 868s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build2 [321 kB] 868s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.0-2 [192 kB] 868s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B] 868s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf python3-six all 1.16.0-7 [13.1 kB] 868s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dateutil all 2.9.0-2 [80.3 kB] 868s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 868s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 868s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 868s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 868s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB] 869s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2024.1-2 [31.4 kB] 869s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-4 [91.3 kB] 869s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.0-1 [1234 kB] 869s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.0.2+dfsg-1build4 [24.8 kB] 869s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB] 869s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.46.0-1build2 [1402 kB] 869s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-2 [57.0 kB] 869s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 869s Get:88 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib armhf 3.8.3-3 [4500 kB] 869s Get:89 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-5 [4728 kB] 869s Get:90 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas all 2.2.3+dfsg-5 [3112 kB] 869s Get:91 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-treetime all 0.11.4-1 [941 kB] 870s Fetched 84.4 MB in 5s (16.9 MB/s) 870s Selecting previously unselected package libpython3.13-minimal:armhf. 870s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59567 files and directories currently installed.) 870s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ... 870s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 870s Selecting previously unselected package python3.13-minimal. 870s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ... 870s Unpacking python3.13-minimal (3.13.0-2) ... 870s Selecting previously unselected package sgml-base. 870s Preparing to unpack .../02-sgml-base_1.31_all.deb ... 870s Unpacking sgml-base (1.31) ... 870s Selecting previously unselected package libtcl8.6:armhf. 870s Preparing to unpack .../03-libtcl8.6_8.6.15+dfsg-2_armhf.deb ... 870s Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ... 870s Selecting previously unselected package libfreetype6:armhf. 870s Preparing to unpack .../04-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 870s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 870s Selecting previously unselected package fonts-dejavu-mono. 870s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8_all.deb ... 870s Unpacking fonts-dejavu-mono (2.37-8) ... 870s Selecting previously unselected package fonts-dejavu-core. 870s Preparing to unpack .../06-fonts-dejavu-core_2.37-8_all.deb ... 870s Unpacking fonts-dejavu-core (2.37-8) ... 870s Selecting previously unselected package libfontenc1:armhf. 870s Preparing to unpack .../07-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 870s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 870s Selecting previously unselected package x11-common. 870s Preparing to unpack .../08-x11-common_1%3a7.7+23ubuntu3_all.deb ... 870s Unpacking x11-common (1:7.7+23ubuntu3) ... 870s Selecting previously unselected package xfonts-encodings. 870s Preparing to unpack .../09-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 870s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 870s Selecting previously unselected package xfonts-utils. 870s Preparing to unpack .../10-xfonts-utils_1%3a7.7+7_armhf.deb ... 870s Unpacking xfonts-utils (1:7.7+7) ... 870s Selecting previously unselected package fonts-urw-base35. 871s Preparing to unpack .../11-fonts-urw-base35_20200910-8_all.deb ... 871s Unpacking fonts-urw-base35 (20200910-8) ... 871s Selecting previously unselected package fontconfig-config. 871s Preparing to unpack .../12-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 871s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 871s Selecting previously unselected package libfontconfig1:armhf. 871s Preparing to unpack .../13-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 871s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 871s Selecting previously unselected package libxrender1:armhf. 871s Preparing to unpack .../14-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 871s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 871s Selecting previously unselected package libxft2:armhf. 871s Preparing to unpack .../15-libxft2_2.3.6-1build1_armhf.deb ... 871s Unpacking libxft2:armhf (2.3.6-1build1) ... 871s Selecting previously unselected package libxss1:armhf. 871s Preparing to unpack .../16-libxss1_1%3a1.2.3-1build3_armhf.deb ... 871s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 871s Selecting previously unselected package libtk8.6:armhf. 871s Preparing to unpack .../17-libtk8.6_8.6.15-1_armhf.deb ... 871s Unpacking libtk8.6:armhf (8.6.15-1) ... 871s Selecting previously unselected package tk8.6-blt2.5. 871s Preparing to unpack .../18-tk8.6-blt2.5_2.5.3+dfsg-7build1_armhf.deb ... 871s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 871s Selecting previously unselected package blt. 871s Preparing to unpack .../19-blt_2.5.3+dfsg-7build1_armhf.deb ... 871s Unpacking blt (2.5.3+dfsg-7build1) ... 871s Selecting previously unselected package fonts-lyx. 871s Preparing to unpack .../20-fonts-lyx_2.4.2.1-1_all.deb ... 871s Unpacking fonts-lyx (2.4.2.1-1) ... 871s Selecting previously unselected package libblas3:armhf. 871s Preparing to unpack .../21-libblas3_3.12.0-3build2_armhf.deb ... 871s Unpacking libblas3:armhf (3.12.0-3build2) ... 871s Selecting previously unselected package libpixman-1-0:armhf. 871s Preparing to unpack .../22-libpixman-1-0_0.44.0-3_armhf.deb ... 871s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 871s Selecting previously unselected package libxcb-render0:armhf. 871s Preparing to unpack .../23-libxcb-render0_1.17.0-2_armhf.deb ... 871s Unpacking libxcb-render0:armhf (1.17.0-2) ... 871s Selecting previously unselected package libxcb-shm0:armhf. 871s Preparing to unpack .../24-libxcb-shm0_1.17.0-2_armhf.deb ... 871s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 871s Selecting previously unselected package libcairo2:armhf. 871s Preparing to unpack .../25-libcairo2_1.18.2-2_armhf.deb ... 871s Unpacking libcairo2:armhf (1.18.2-2) ... 871s Selecting previously unselected package libdeflate0:armhf. 871s Preparing to unpack .../26-libdeflate0_1.22-1_armhf.deb ... 871s Unpacking libdeflate0:armhf (1.22-1) ... 872s Selecting previously unselected package libgfortran5:armhf. 872s Preparing to unpack .../27-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 872s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 872s Selecting previously unselected package libgomp1:armhf. 872s Preparing to unpack .../28-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 872s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 872s Selecting previously unselected package libgraphite2-3:armhf. 872s Preparing to unpack .../29-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 872s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 872s Selecting previously unselected package libharfbuzz0b:armhf. 872s Preparing to unpack .../30-libharfbuzz0b_10.0.1-1_armhf.deb ... 872s Unpacking libharfbuzz0b:armhf (10.0.1-1) ... 872s Selecting previously unselected package libimagequant0:armhf. 872s Preparing to unpack .../31-libimagequant0_2.18.0-1build1_armhf.deb ... 872s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 872s Selecting previously unselected package libjpeg-turbo8:armhf. 872s Preparing to unpack .../32-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 872s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 872s Selecting previously unselected package libjpeg8:armhf. 872s Preparing to unpack .../33-libjpeg8_8c-2ubuntu11_armhf.deb ... 872s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 872s Selecting previously unselected package libjs-jquery. 872s Preparing to unpack .../34-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 872s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 872s Selecting previously unselected package libjs-jquery-ui. 872s Preparing to unpack .../35-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 872s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 872s Selecting previously unselected package liblapack3:armhf. 872s Preparing to unpack .../36-liblapack3_3.12.0-3build2_armhf.deb ... 872s Unpacking liblapack3:armhf (3.12.0-3build2) ... 872s Selecting previously unselected package liblbfgsb0:armhf. 872s Preparing to unpack .../37-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 872s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 872s Selecting previously unselected package liblcms2-2:armhf. 872s Preparing to unpack .../38-liblcms2-2_2.16-2_armhf.deb ... 872s Unpacking liblcms2-2:armhf (2.16-2) ... 872s Selecting previously unselected package liblerc4:armhf. 872s Preparing to unpack .../39-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 872s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 872s Selecting previously unselected package libpython3.13-stdlib:armhf. 872s Preparing to unpack .../40-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 872s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 872s Selecting previously unselected package libqhull-r8.0:armhf. 872s Preparing to unpack .../41-libqhull-r8.0_2020.2-6build1_armhf.deb ... 872s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 872s Selecting previously unselected package libraqm0:armhf. 872s Preparing to unpack .../42-libraqm0_0.10.1-1build1_armhf.deb ... 872s Unpacking libraqm0:armhf (0.10.1-1build1) ... 872s Selecting previously unselected package libsharpyuv0:armhf. 872s Preparing to unpack .../43-libsharpyuv0_1.4.0-0.1_armhf.deb ... 872s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 872s Selecting previously unselected package libjbig0:armhf. 872s Preparing to unpack .../44-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 872s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 872s Selecting previously unselected package libwebp7:armhf. 872s Preparing to unpack .../45-libwebp7_1.4.0-0.1_armhf.deb ... 872s Unpacking libwebp7:armhf (1.4.0-0.1) ... 872s Selecting previously unselected package libtiff6:armhf. 872s Preparing to unpack .../46-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 872s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 872s Selecting previously unselected package libwebpdemux2:armhf. 872s Preparing to unpack .../47-libwebpdemux2_1.4.0-0.1_armhf.deb ... 872s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 872s Selecting previously unselected package libwebpmux3:armhf. 872s Preparing to unpack .../48-libwebpmux3_1.4.0-0.1_armhf.deb ... 872s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 872s Selecting previously unselected package libxslt1.1:armhf. 872s Preparing to unpack .../49-libxslt1.1_1.1.39-0exp1ubuntu1_armhf.deb ... 872s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 872s Selecting previously unselected package python-matplotlib-data. 872s Preparing to unpack .../50-python-matplotlib-data_3.8.3-3_all.deb ... 872s Unpacking python-matplotlib-data (3.8.3-3) ... 873s Selecting previously unselected package python3.13. 873s Preparing to unpack .../51-python3.13_3.13.0-2_armhf.deb ... 873s Unpacking python3.13 (3.13.0-2) ... 873s Selecting previously unselected package python3-all. 873s Preparing to unpack .../52-python3-all_3.12.7-1_armhf.deb ... 873s Unpacking python3-all (3.12.7-1) ... 873s Selecting previously unselected package python3-appdirs. 873s Preparing to unpack .../53-python3-appdirs_1.4.4-4_all.deb ... 873s Unpacking python3-appdirs (1.4.4-4) ... 873s Selecting previously unselected package python3-numpy. 873s Preparing to unpack .../54-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 873s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 873s Selecting previously unselected package python3.12-tk. 873s Preparing to unpack .../55-python3.12-tk_3.12.7-3_armhf.deb ... 873s Unpacking python3.12-tk (3.12.7-3) ... 873s Selecting previously unselected package python3.13-tk. 873s Preparing to unpack .../56-python3.13-tk_3.13.0-2_armhf.deb ... 873s Unpacking python3.13-tk (3.13.0-2) ... 873s Selecting previously unselected package python3-tk:armhf. 873s Preparing to unpack .../57-python3-tk_3.12.7-1_armhf.deb ... 873s Unpacking python3-tk:armhf (3.12.7-1) ... 873s Selecting previously unselected package python3-pil.imagetk:armhf. 873s Preparing to unpack .../58-python3-pil.imagetk_10.4.0-1ubuntu1_armhf.deb ... 873s Unpacking python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 873s Selecting previously unselected package libopenjp2-7:armhf. 873s Preparing to unpack .../59-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ... 873s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 873s Selecting previously unselected package python3-pil:armhf. 873s Preparing to unpack .../60-python3-pil_10.4.0-1ubuntu1_armhf.deb ... 873s Unpacking python3-pil:armhf (10.4.0-1ubuntu1) ... 873s Selecting previously unselected package python3-cairo. 873s Preparing to unpack .../61-python3-cairo_1.26.1-2_armhf.deb ... 873s Unpacking python3-cairo (1.26.1-2) ... 873s Selecting previously unselected package python3-freetype. 873s Preparing to unpack .../62-python3-freetype_2.5.1-1_all.deb ... 873s Unpacking python3-freetype (2.5.1-1) ... 873s Selecting previously unselected package python3-rlpycairo. 873s Preparing to unpack .../63-python3-rlpycairo_0.3.0-3_all.deb ... 873s Unpacking python3-rlpycairo (0.3.0-3) ... 873s Selecting previously unselected package python3-reportlab. 873s Preparing to unpack .../64-python3-reportlab_4.2.5-1_all.deb ... 873s Unpacking python3-reportlab (4.2.5-1) ... 873s Selecting previously unselected package xml-core. 873s Preparing to unpack .../65-xml-core_0.19_all.deb ... 873s Unpacking xml-core (0.19) ... 873s Selecting previously unselected package w3c-sgml-lib. 873s Preparing to unpack .../66-w3c-sgml-lib_1.3-3_all.deb ... 873s Unpacking w3c-sgml-lib (1.3-3) ... 873s Selecting previously unselected package python3-biopython. 873s Preparing to unpack .../67-python3-biopython_1.84+dfsg-4_armhf.deb ... 873s Unpacking python3-biopython (1.84+dfsg-4) ... 874s Selecting previously unselected package python3-brotli. 874s Preparing to unpack .../68-python3-brotli_1.1.0-2build2_armhf.deb ... 874s Unpacking python3-brotli (1.1.0-2build2) ... 874s Selecting previously unselected package python3-contourpy. 874s Preparing to unpack .../69-python3-contourpy_1.3.0-2_armhf.deb ... 874s Unpacking python3-contourpy (1.3.0-2) ... 874s Selecting previously unselected package python3-cycler. 874s Preparing to unpack .../70-python3-cycler_0.12.1-1_all.deb ... 874s Unpacking python3-cycler (0.12.1-1) ... 874s Selecting previously unselected package python3-six. 874s Preparing to unpack .../71-python3-six_1.16.0-7_all.deb ... 874s Unpacking python3-six (1.16.0-7) ... 874s Selecting previously unselected package python3-dateutil. 874s Preparing to unpack .../72-python3-dateutil_2.9.0-2_all.deb ... 874s Unpacking python3-dateutil (2.9.0-2) ... 874s Selecting previously unselected package python3-decorator. 874s Preparing to unpack .../73-python3-decorator_5.1.1-5_all.deb ... 874s Unpacking python3-decorator (5.1.1-5) ... 874s Selecting previously unselected package python3-scipy. 874s Preparing to unpack .../74-python3-scipy_1.13.1-5_armhf.deb ... 874s Unpacking python3-scipy (1.13.1-5) ... 874s Selecting previously unselected package python3-ufolib2. 874s Preparing to unpack .../75-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 874s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 874s Selecting previously unselected package python3-mpmath. 874s Preparing to unpack .../76-python3-mpmath_1.3.0-1_all.deb ... 874s Unpacking python3-mpmath (1.3.0-1) ... 874s Selecting previously unselected package python3-sympy. 874s Preparing to unpack .../77-python3-sympy_1.13.3-1_all.deb ... 874s Unpacking python3-sympy (1.13.3-1) ... 875s Selecting previously unselected package python3-tz. 875s Preparing to unpack .../78-python3-tz_2024.1-2_all.deb ... 875s Unpacking python3-tz (2024.1-2) ... 875s Selecting previously unselected package python3-fs. 875s Preparing to unpack .../79-python3-fs_2.4.16-4_all.deb ... 875s Unpacking python3-fs (2.4.16-4) ... 875s Selecting previously unselected package python3-lxml:armhf. 875s Preparing to unpack .../80-python3-lxml_5.3.0-1_armhf.deb ... 875s Unpacking python3-lxml:armhf (5.3.0-1) ... 875s Selecting previously unselected package python3-lz4. 875s Preparing to unpack .../81-python3-lz4_4.0.2+dfsg-1build4_armhf.deb ... 875s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 875s Selecting previously unselected package unicode-data. 875s Preparing to unpack .../82-unicode-data_15.1.0-1_all.deb ... 875s Unpacking unicode-data (15.1.0-1) ... 875s Selecting previously unselected package python3-fonttools. 875s Preparing to unpack .../83-python3-fonttools_4.46.0-1build2_armhf.deb ... 875s Unpacking python3-fonttools (4.46.0-1build2) ... 875s Selecting previously unselected package python3-kiwisolver. 875s Preparing to unpack .../84-python3-kiwisolver_1.4.7-2_armhf.deb ... 875s Unpacking python3-kiwisolver (1.4.7-2) ... 875s Selecting previously unselected package python3-packaging. 875s Preparing to unpack .../85-python3-packaging_24.1-1_all.deb ... 875s Unpacking python3-packaging (24.1-1) ... 875s Selecting previously unselected package python3-matplotlib. 875s Preparing to unpack .../86-python3-matplotlib_3.8.3-3_armhf.deb ... 875s Unpacking python3-matplotlib (3.8.3-3) ... 876s Selecting previously unselected package python3-pandas-lib:armhf. 876s Preparing to unpack .../87-python3-pandas-lib_2.2.3+dfsg-5_armhf.deb ... 876s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-5) ... 876s Selecting previously unselected package python3-pandas. 876s Preparing to unpack .../88-python3-pandas_2.2.3+dfsg-5_all.deb ... 876s Unpacking python3-pandas (2.2.3+dfsg-5) ... 876s Selecting previously unselected package python3-treetime. 876s Preparing to unpack .../89-python3-treetime_0.11.4-1_all.deb ... 876s Unpacking python3-treetime (0.11.4-1) ... 876s Selecting previously unselected package autopkgtest-satdep. 876s Preparing to unpack .../90-2-autopkgtest-satdep.deb ... 876s Unpacking autopkgtest-satdep (0) ... 876s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 876s Setting up liblcms2-2:armhf (2.16-2) ... 876s Setting up libpixman-1-0:armhf (0.44.0-3) ... 876s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 876s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 876s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 876s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 877s Setting up libxcb-render0:armhf (1.17.0-2) ... 877s Setting up fonts-lyx (2.4.2.1-1) ... 877s Setting up x11-common (1:7.7+23ubuntu3) ... 877s Setting up libdeflate0:armhf (1.22-1) ... 877s Setting up libqhull-r8.0:armhf (2020.2-6build1) ... 877s Setting up libxcb-shm0:armhf (1.17.0-2) ... 877s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 877s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 877s Setting up python3-tz (2024.1-2) ... 877s Setting up unicode-data (15.1.0-1) ... 877s Setting up python3-six (1.16.0-7) ... 877s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 877s Setting up python3-decorator (5.1.1-5) ... 877s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 877s Setting up libblas3:armhf (3.12.0-3build2) ... 877s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 877s Setting up python3-packaging (24.1-1) ... 878s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 878s Setting up python3-brotli (1.1.0-2build2) ... 878s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 878s Setting up python3-cycler (0.12.1-1) ... 878s Setting up libimagequant0:armhf (2.18.0-1build1) ... 878s Setting up fonts-dejavu-mono (2.37-8) ... 878s Setting up python3-kiwisolver (1.4.7-2) ... 878s Setting up libtcl8.6:armhf (8.6.15+dfsg-2) ... 878s Setting up fonts-dejavu-core (2.37-8) ... 878s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 878s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 878s Setting up libwebp7:armhf (1.4.0-0.1) ... 878s Setting up libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 878s Setting up libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 878s Setting up python3.13-minimal (3.13.0-2) ... 879s Setting up libharfbuzz0b:armhf (10.0.1-1) ... 879s Setting up python3-dateutil (2.9.0-2) ... 880s Setting up sgml-base (1.31) ... 880s Setting up libxss1:armhf (1:1.2.3-1build3) ... 880s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 880s Setting up python3-mpmath (1.3.0-1) ... 880s Setting up python-matplotlib-data (3.8.3-3) ... 880s Setting up libwebpmux3:armhf (1.4.0-0.1) ... 880s Setting up python3-appdirs (1.4.4-4) ... 881s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... 881s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 881s Setting up python3-sympy (1.13.3-1) ... 895s Setting up liblapack3:armhf (3.12.0-3build2) ... 895s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 895s Setting up python3.13 (3.13.0-2) ... 896s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 896s Setting up libwebpdemux2:armhf (1.4.0-0.1) ... 896s Setting up python3-all (3.12.7-1) ... 896s Setting up python3-freetype (2.5.1-1) ... 897s Setting up xfonts-utils (1:7.7+7) ... 897s Setting up python3-fs (2.4.16-4) ... 897s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 897s Setting up libraqm0:armhf (0.10.1-1build1) ... 897s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 901s Setting up python3-lxml:armhf (5.3.0-1) ... 901s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 901s Setting up xml-core (0.19) ... 902s Setting up python3-contourpy (1.3.0-2) ... 902s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 902s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 902s Setting up libxft2:armhf (2.3.6-1build1) ... 902s Setting up python3-scipy (1.13.1-5) ... 910s Setting up libtk8.6:armhf (8.6.15-1) ... 910s Setting up python3-pandas-lib:armhf (2.2.3+dfsg-5) ... 910s Setting up python3.12-tk (3.12.7-3) ... 910s Setting up fonts-urw-base35 (20200910-8) ... 910s Setting up libcairo2:armhf (1.18.2-2) ... 910s Setting up python3.13-tk (3.13.0-2) ... 910s Setting up python3-pil:armhf (10.4.0-1ubuntu1) ... 911s Setting up python3-pandas (2.2.3+dfsg-5) ... 922s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 922s Setting up python3-cairo (1.26.1-2) ... 922s Setting up blt (2.5.3+dfsg-7build1) ... 922s Setting up python3-tk:armhf (3.12.7-1) ... 922s Setting up python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 922s Setting up python3-rlpycairo (0.3.0-3) ... 923s Setting up python3-reportlab (4.2.5-1) ... 924s Setting up python3-fonttools (4.46.0-1build2) ... 926s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 926s Setting up python3-matplotlib (3.8.3-3) ... 930s Processing triggers for libc-bin (2.40-1ubuntu3) ... 930s Processing triggers for systemd (256.5-2ubuntu4) ... 930s Processing triggers for man-db (2.12.1-3) ... 930s Processing triggers for sgml-base (1.31) ... 930s Setting up w3c-sgml-lib (1.3-3) ... 958s Setting up python3-biopython (1.84+dfsg-4) ... 961s Setting up python3-treetime (0.11.4-1) ... 961s Setting up autopkgtest-satdep (0) ... 980s (Reading database ... 71054 files and directories currently installed.) 980s Removing autopkgtest-satdep (0) ... 995s autopkgtest [04:09:25]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import treetime; print(treetime)" ; done 995s autopkgtest [04:09:25]: test autodep8-python3: [----------------------- 997s Testing with python3.13: 997s Traceback (most recent call last): 997s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 997s from . import multiarray 997s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 997s from . import overrides 997s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 997s from numpy.core._multiarray_umath import ( 997s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 997s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 997s 997s During handling of the above exception, another exception occurred: 997s 997s Traceback (most recent call last): 997s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 997s from numpy.__config__ import show as show_config 997s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 997s from numpy.core._multiarray_umath import ( 997s ...<3 lines>... 997s ) 997s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 997s raise ImportError(msg) 997s ImportError: 997s 997s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 997s 997s Importing the numpy C-extensions failed. This error can happen for 997s many reasons, often due to issues with your setup or how NumPy was 997s installed. 997s 997s We have compiled some common reasons and troubleshooting tips at: 997s 997s https://numpy.org/devdocs/user/troubleshooting-importerror.html 997s 997s Please note and check the following: 997s 997s * The Python version is: Python3.13 from "/usr/bin/python3.13" 997s * The NumPy version is: "1.26.4" 997s 997s and make sure that they are the versions you expect. 997s Please carefully study the documentation linked above for further help. 997s 997s Original error was: No module named 'numpy.core._multiarray_umath' 997s 997s 997s The above exception was the direct cause of the following exception: 997s 997s Traceback (most recent call last): 997s File "", line 1, in 997s import treetime; print(treetime) 997s ^^^^^^^^^^^^^^^ 997s File "/usr/lib/python3/dist-packages/treetime/__init__.py", line 38, in 997s from .treeanc import TreeAnc 997s File "/usr/lib/python3/dist-packages/treetime/treeanc.py", line 3, in 997s import numpy as np 997s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 997s raise ImportError(msg) from e 997s ImportError: Error importing numpy: you should not try to import numpy from 997s its source directory; please exit the numpy source tree, and relaunch 997s your python interpreter from there. 997s autopkgtest [04:09:27]: test autodep8-python3: -----------------------] 1001s autopkgtest [04:09:31]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 1001s autodep8-python3 FAIL non-zero exit status 1 1005s autopkgtest [04:09:35]: @@@@@@@@@@@@@@@@@@@@ summary 1005s run-unit-test PASS 1005s autodep8-python3 FAIL non-zero exit status 1