0s autopkgtest [15:49:49]: starting date and time: 2025-03-15 15:49:49+0000 0s autopkgtest [15:49:49]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:49:49]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.uqleqm8w/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade python-pyspike --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.239 lxd-armhf-10.145.243.239:autopkgtest/ubuntu/plucky/armhf 22s autopkgtest [15:50:11]: testbed dpkg architecture: armhf 24s autopkgtest [15:50:13]: testbed apt version: 2.9.33 28s autopkgtest [15:50:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [15:50:19]: testbed release detected to be: None 38s autopkgtest [15:50:27]: updating testbed package index (apt update) 40s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 41s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 41s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 42s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 42s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 43s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 43s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 43s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 43s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 43s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 43s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 44s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 44s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 44s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 44s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 68s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 70s Get:17 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 70s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 72s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 72s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 72s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 89s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 91s Fetched 41.0 MB in 50s (815 kB/s) 92s Reading package lists... 109s autopkgtest [15:51:38]: upgrading testbed (apt dist-upgrade and autopurge) 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 113s Starting 2 pkgProblemResolver with broken count: 0 113s Done 115s Entering ResolveByKeep 115s 116s Calculating upgrade... 117s The following packages will be upgraded: 117s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 117s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Need to get 8683 kB of archives. 117s After this operation, 23.6 kB of additional disk space will be used. 117s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 120s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 121s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 125s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 126s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 126s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 126s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 127s Preconfiguring packages ... 127s Fetched 8683 kB in 10s (906 kB/s) 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 127s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 128s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 128s Setting up libc6:armhf (2.41-1ubuntu2) ... 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 128s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 128s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 128s Setting up libc-bin (2.41-1ubuntu2) ... 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 129s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 129s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 129s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 129s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 129s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 129s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 129s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 129s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 129s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 130s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 130s Setting up sos (4.9.0-5) ... 131s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 131s Setting up locales (2.41-1ubuntu2) ... 132s Generating locales (this might take a while)... 136s en_US.UTF-8... done 136s Generation complete. 136s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 136s Setting up strace (6.13+ds-1ubuntu1) ... 136s Processing triggers for man-db (2.13.0-1) ... 137s Processing triggers for systemd (257.3-1ubuntu3) ... 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 141s Starting pkgProblemResolver with broken count: 0 141s Starting 2 pkgProblemResolver with broken count: 0 141s Done 142s Solving dependencies... 143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s autopkgtest [15:52:14]: rebooting testbed after setup commands that affected boot 187s autopkgtest [15:52:56]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 212s autopkgtest [15:53:21]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyspike 239s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pyspike 0.8.0+dfsg-3.1build2 (dsc) [2172 B] 239s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pyspike 0.8.0+dfsg-3.1build2 (tar) [16.5 MB] 239s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pyspike 0.8.0+dfsg-3.1build2 (diff) [4688 B] 239s gpgv: Signature made Tue Mar 4 19:21:41 2025 UTC 239s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 239s gpgv: Can't check signature: No public key 239s dpkg-source: warning: cannot verify inline signature for ./python-pyspike_0.8.0+dfsg-3.1build2.dsc: no acceptable signature found 240s autopkgtest [15:53:49]: testing package python-pyspike version 0.8.0+dfsg-3.1build2 242s autopkgtest [15:53:51]: build not needed 245s autopkgtest [15:53:54]: test upstream.sh: preparing testbed 247s Reading package lists... 247s Building dependency tree... 247s Reading state information... 248s Starting pkgProblemResolver with broken count: 0 248s Starting 2 pkgProblemResolver with broken count: 0 248s Done 250s The following NEW packages will be installed: 250s libblas3 libgfortran5 liblapack3 liblbfgsb0 python3-all python3-decorator 250s python3-iniconfig python3-numpy python3-numpy-dev python3-pluggy 250s python3-pyspike python3-pytest python3-scipy 250s 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. 250s Need to get 23.7 MB of archives. 250s After this operation, 88.2 MB of additional disk space will be used. 250s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy-dev armhf 1:2.2.3+ds-5 [141 kB] 251s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB] 251s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB] 251s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 254s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:2.2.3+ds-5 [3725 kB] 257s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 257s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.13.2-2 [886 B] 257s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 257s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 258s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 258s Get:11 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyspike armhf 0.8.0+dfsg-3.1build2 [266 kB] 258s Get:12 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.5-1 [252 kB] 258s Get:13 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.14.1-4ubuntu2 [16.7 MB] 277s Fetched 23.7 MB in 26s (916 kB/s) 277s Selecting previously unselected package python3-numpy-dev:armhf. 277s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 277s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_armhf.deb ... 277s Unpacking python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 277s Selecting previously unselected package libblas3:armhf. 277s Preparing to unpack .../01-libblas3_3.12.1-2_armhf.deb ... 277s Unpacking libblas3:armhf (3.12.1-2) ... 277s Selecting previously unselected package libgfortran5:armhf. 277s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_armhf.deb ... 277s Unpacking libgfortran5:armhf (15-20250222-0ubuntu1) ... 277s Selecting previously unselected package liblapack3:armhf. 277s Preparing to unpack .../03-liblapack3_3.12.1-2_armhf.deb ... 277s Unpacking liblapack3:armhf (3.12.1-2) ... 277s Selecting previously unselected package python3-numpy. 277s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_armhf.deb ... 277s Unpacking python3-numpy (1:2.2.3+ds-5) ... 278s Selecting previously unselected package liblbfgsb0:armhf. 278s Preparing to unpack .../05-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 278s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 278s Selecting previously unselected package python3-all. 278s Preparing to unpack .../06-python3-all_3.13.2-2_armhf.deb ... 278s Unpacking python3-all (3.13.2-2) ... 278s Selecting previously unselected package python3-decorator. 278s Preparing to unpack .../07-python3-decorator_5.1.1-5_all.deb ... 278s Unpacking python3-decorator (5.1.1-5) ... 278s Selecting previously unselected package python3-iniconfig. 278s Preparing to unpack .../08-python3-iniconfig_1.1.1-2_all.deb ... 278s Unpacking python3-iniconfig (1.1.1-2) ... 278s Selecting previously unselected package python3-pluggy. 278s Preparing to unpack .../09-python3-pluggy_1.5.0-1_all.deb ... 278s Unpacking python3-pluggy (1.5.0-1) ... 278s Selecting previously unselected package python3-pyspike. 278s Preparing to unpack .../10-python3-pyspike_0.8.0+dfsg-3.1build2_armhf.deb ... 278s Unpacking python3-pyspike (0.8.0+dfsg-3.1build2) ... 278s Selecting previously unselected package python3-pytest. 278s Preparing to unpack .../11-python3-pytest_8.3.5-1_all.deb ... 278s Unpacking python3-pytest (8.3.5-1) ... 278s Selecting previously unselected package python3-scipy. 278s Preparing to unpack .../12-python3-scipy_1.14.1-4ubuntu2_armhf.deb ... 278s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 279s Setting up python3-iniconfig (1.1.1-2) ... 280s Setting up python3-all (3.13.2-2) ... 280s Setting up python3-decorator (5.1.1-5) ... 280s Setting up libblas3:armhf (3.12.1-2) ... 280s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 280s Setting up python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 280s Setting up libgfortran5:armhf (15-20250222-0ubuntu1) ... 280s Setting up python3-pluggy (1.5.0-1) ... 280s Setting up liblapack3:armhf (3.12.1-2) ... 280s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 280s Setting up python3-pytest (8.3.5-1) ... 281s Setting up python3-numpy (1:2.2.3+ds-5) ... 284s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 284s Setting up python3-scipy (1.14.1-4ubuntu2) ... 289s Setting up python3-pyspike (0.8.0+dfsg-3.1build2) ... 290s Processing triggers for man-db (2.13.0-1) ... 290s Processing triggers for libc-bin (2.41-1ubuntu2) ... 298s autopkgtest [15:54:47]: test upstream.sh: [----------------------- 300s Running upstream tests with Python 3.13. 300s ============================= test session starts ============================== 300s platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 300s cachedir: .pytest_cache 300s rootdir: /tmp/autopkgtest.I7qXZd/autopkgtest_tmp 300s plugins: typeguard-4.4.2 301s collecting ... collected 50 items 301s 302s test/numeric/test_regression_random_spikes.py::test_regression_random PASSED [ 2%] 302s test/test_MRTS.py::test_MRTS PASSED [ 4%] 302s test/test_MRTS.py::test_autoThresh PASSED [ 6%] 302s test/test_directionality.py::test_spike_directionality PASSED [ 8%] 302s test/test_directionality.py::test_spike_train_order PASSED [ 10%] 302s test/test_distance.py::test_isi PASSED [ 12%] 302s test/test_distance.py::test_spike PASSED [ 14%] 302s test/test_distance.py::test_spike_sync PASSED [ 16%] 302s test/test_distance.py::test_multi_isi PASSED [ 18%] 302s test/test_distance.py::test_multi_spike PASSED [ 20%] 302s test/test_distance.py::test_multi_spike_sync PASSED [ 22%] 302s test/test_distance.py::test_isi_matrix PASSED [ 24%] 302s test/test_distance.py::test_spike_matrix PASSED [ 26%] 302s test/test_distance.py::test_spike_sync_matrix PASSED [ 28%] 302s test/test_distance.py::test_regression_spiky PASSED [ 30%] 302s test/test_distance.py::test_multi_variate_subsets PASSED [ 32%] 302s test/test_empty.py::test_get_non_empty PASSED [ 34%] 302s test/test_empty.py::test_isi_empty PASSED [ 36%] 302s test/test_empty.py::test_spike_empty PASSED [ 38%] 302s test/test_empty.py::test_spike_sync_empty PASSED [ 40%] 302s test/test_function.py::test_pwc PASSED [ 42%] 302s test/test_function.py::test_pwc_add PASSED [ 44%] 302s test/test_function.py::test_pwc_mul PASSED [ 46%] 302s test/test_function.py::test_pwc_avrg PASSED [ 48%] 302s test/test_function.py::test_pwc_integral PASSED [ 50%] 302s test/test_function.py::test_pwc_integral_bad_bounds_inv PASSED [ 52%] 302s test/test_function.py::test_pwc_integral_bad_bounds_oob_1 PASSED [ 54%] 302s test/test_function.py::test_pwc_integral_bad_bounds_oob_2 PASSED [ 56%] 302s test/test_function.py::test_pwl PASSED [ 58%] 302s test/test_function.py::test_pwl_add PASSED [ 60%] 302s test/test_function.py::test_pwl_mul PASSED [ 62%] 302s test/test_function.py::test_pwl_avrg PASSED [ 64%] 302s test/test_function.py::test_df PASSED [ 66%] 302s test/test_generic_interfaces.py::test_isi_profile PASSED [ 68%] 302s test/test_generic_interfaces.py::test_isi_distance PASSED [ 70%] 302s test/test_generic_interfaces.py::test_spike_profile PASSED [ 72%] 302s test/test_generic_interfaces.py::test_spike_distance PASSED [ 74%] 302s test/test_generic_interfaces.py::test_spike_sync_profile PASSED [ 76%] 302s test/test_generic_interfaces.py::test_spike_sync PASSED [ 78%] 302s test/test_reconcile.py::test_reconcile PASSED [ 80%] 302s test/test_regression/test_regression_15.py::test_regression_15_isi PASSED [ 82%] 302s test/test_regression/test_regression_15.py::test_regression_15_spike PASSED [ 84%] 303s test/test_regression/test_regression_15.py::test_regression_15_sync PASSED [ 86%] 303s test/test_save_load.py::test_save_load PASSED [ 88%] 303s test/test_spikes.py::test_load_from_txt PASSED [ 90%] 303s test/test_spikes.py::test_load_time_series PASSED [ 92%] 303s test/test_spikes.py::test_merge_spike_trains PASSED [ 94%] 303s test/test_spikes.py::test_merge_empty_spike_trains PASSED [ 96%] 303s test/test_sync_filter.py::test_single_prof PASSED [ 98%] 303s test/test_sync_filter.py::test_filter PASSED [100%] 303s 303s =============================== warnings summary =============================== 303s ../../../usr/lib/python3/dist-packages/pyspike/__init__.py:40 303s /usr/lib/python3/dist-packages/pyspike/__init__.py:40: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 303s from pkg_resources import get_distribution, DistributionNotFound 303s 303s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 303s ======================== 50 passed, 1 warning in 2.11s ========================= 303s autopkgtest [15:54:52]: test upstream.sh: -----------------------] 307s upstream.sh PASS 307s autopkgtest [15:54:56]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 311s autopkgtest [15:55:00]: @@@@@@@@@@@@@@@@@@@@ summary 311s upstream.sh PASS