0s autopkgtest [01:11:35]: starting date and time: 2024-11-14 01:11:35+0000 0s autopkgtest [01:11:35]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [01:11:35]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.h_hdwkhx/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-pymbar --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.158 lxd-armhf-10.145.243.158:autopkgtest/ubuntu/plucky/armhf 53s autopkgtest [01:12:28]: testbed dpkg architecture: armhf 57s autopkgtest [01:12:30]: testbed apt version: 2.9.8 57s autopkgtest [01:12:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.6 kB] 63s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [990 kB] 64s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 64s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 64s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [103 kB] 64s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [667 kB] 64s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 64s Fetched 1975 kB in 1s (2193 kB/s) 64s Reading package lists... 81s tee: /proc/self/fd/2: Permission denied 102s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 102s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 102s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 104s Reading package lists... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Calculating upgrade... 105s The following packages were automatically installed and are no longer required: 105s libperl5.38t64 perl-modules-5.38 python3-netifaces 105s Use 'apt autoremove' to remove them. 105s The following NEW packages will be installed: 105s libperl5.40 perl-modules-5.40 python3.13-gdbm systemd-cryptsetup 105s The following packages will be upgraded: 105s apport apport-core-dump-handler base-files base-passwd bash-completion 105s dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info 105s install-info iproute2 libarchive13t64 libatomic1 libattr1 105s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 105s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 105s libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libdb5.3t64 105s libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 libevdev2 105s libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 libgnutls30t64 105s libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common 105s libkeyutils1 libldap-common libldap2 liblocale-gettext-perl libmaxminddb0 105s libmnl0 libnetfilter-conntrack3 libnetplan1 libnewt0.52 libnghttp2-14 105s libnspr4 libnss-systemd libnvme1t64 libpam-systemd libpipeline1 libplymouth5 105s libpng16-16t64 libpopt0 libpython3-stdlib libpython3.12-minimal 105s libpython3.12-stdlib libsgutils2-1.46-2 libssh2-1t64 libstdc++6 105s libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl 105s libtraceevent1 libtraceevent1-plugin libudev1 libudisks2-0 liburcu8t64 105s libutempter0 libuv1t64 libx11-6 libx11-data libxau6 libxmlb2 mawk 105s motd-news-config nano netplan-generator netplan.io openssh-client 105s openssh-server openssh-sftp-server pci.ids perl perl-base plymouth 105s plymouth-theme-ubuntu-text python3 python3-apport python3-certifi 105s python3-cffi-backend python3-configobj python3-gdbm python3-gi python3-idna 105s python3-jaraco.functools python3-json-pointer python3-jsonpatch 105s python3-lazr.restfulclient python3-lazr.uri python3-minimal 105s python3-more-itertools python3-netplan python3-newt python3-oauthlib 105s python3-problem-report python3-typeguard python3-urllib3 python3-wadllib 105s python3-zipp python3.12 python3.12-gdbm python3.12-minimal sg3-utils 105s sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv 105s systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny 105s whiptail xxd 105s 143 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 105s Need to get 45.5 MB of archives. 105s After this operation, 43.2 MB of additional disk space will be used. 105s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B] 106s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB] 108s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB] 108s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB] 108s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 108s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 108s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 108s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 108s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB] 108s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 108s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 108s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB] 108s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB] 108s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB] 108s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB] 108s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB] 108s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 108s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB] 108s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB] 108s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB] 108s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB] 109s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB] 109s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB] 109s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB] 109s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB] 109s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB] 109s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB] 109s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB] 109s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB] 109s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB] 109s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB] 109s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB] 109s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB] 109s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB] 109s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB] 109s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB] 109s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB] 109s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B] 109s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB] 109s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB] 109s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB] 109s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB] 109s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 109s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 109s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB] 109s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB] 109s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 109s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 109s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 109s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB] 109s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB] 109s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 109s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB] 109s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB] 109s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 109s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB] 109s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB] 109s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB] 109s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB] 109s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB] 109s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 109s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 109s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB] 109s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 109s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 109s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 109s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 109s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB] 109s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 110s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B] 110s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB] 110s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 110s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB] 110s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB] 110s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB] 110s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 110s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB] 110s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB] 110s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 110s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 110s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB] 110s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB] 110s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB] 110s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB] 110s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 110s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 110s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB] 110s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B] 110s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB] 110s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB] 110s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 110s Get:95 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 110s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB] 110s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB] 110s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB] 110s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB] 110s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB] 110s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 110s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB] 110s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 110s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 110s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 110s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB] 110s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 111s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB] 111s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB] 111s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB] 111s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B] 111s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB] 111s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B] 111s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB] 111s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB] 111s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB] 111s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB] 111s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B] 111s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB] 111s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB] 111s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 111s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 111s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 111s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB] 111s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 111s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB] 111s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB] 111s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB] 111s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 111s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B] 111s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 111s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB] 111s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB] 111s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB] 111s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 111s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB] 111s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 111s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB] 111s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 111s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB] 111s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB] 111s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB] 111s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB] 111s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 111s Get:145 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 111s Get:146 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB] 111s Get:147 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB] 112s Preconfiguring packages ... 112s Fetched 45.5 MB in 6s (7731 kB/s) 112s (Reading database ... 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(0.18+ds-1) ... 125s Setting up libevdev2:armhf (1.13.3+dfsg-1) ... 125s Setting up libldap2:armhf (2.6.8+dfsg-1~exp4ubuntu3) ... 125s Setting up info (7.1.1-1) ... 125s Setting up liblocale-gettext-perl (1.07-7build1) ... 125s Setting up libbpf1:armhf (1:1.5.0-1) ... 125s Setting up libudisks2-0:armhf (2.10.1-11ubuntu1) ... 125s Setting up python3.13-gdbm (3.13.0-2) ... 125s Setting up libpopt0:armhf (1.19+dfsg-2) ... 125s Setting up sg3-utils (1.46-3ubuntu5) ... 125s Setting up python3.12-minimal (3.12.7-3) ... 125s Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... 125s Setting up libblockdev-mdraid3:armhf (3.2.1-1) ... 125s Setting up libblockdev-crypto3:armhf (3.2.1-1) ... 125s Setting up libblockdev-swap3:armhf (3.2.1-1) ... 125s Setting up iproute2 (6.10.0-2ubuntu1) ... 125s Setting up openssh-client (1:9.7p1-7ubuntu5) ... 125s Setting up python3.12 (3.12.7-3) ... 127s Setting up libblockdev-loop3:armhf (3.2.1-1) ... 127s Setting up systemd (256.5-2ubuntu4) ... 127s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 127s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 127s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 127s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 127s Setting up libblockdev3:armhf (3.2.1-1) ... 127s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 127s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 127s Setting up libblockdev-part3:armhf (3.2.1-1) ... 127s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 127s update-initramfs: deferring update (trigger activated) 127s Setting up libperl5.40:armhf (5.40.0-7) ... 127s Setting up perl (5.40.0-7) ... 127s Setting up systemd-cryptsetup (256.5-2ubuntu4) ... 127s Setting up libnvme1t64 (1.11-1) ... 127s Setting up systemd-timesyncd (256.5-2ubuntu4) ... 128s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 128s Setting up udev (256.5-2ubuntu4) ... 129s Setting up libdpkg-perl (1.22.11ubuntu3) ... 129s Setting up libblockdev-nvme3:armhf (3.2.1-1) ... 129s Setting up libdrm2:armhf (2.4.123-1) ... 129s Setting up whiptail (0.52.24-2ubuntu4) ... 129s Setting up libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) ... 129s Setting up libplymouth5:armhf (24.004.60-1ubuntu11) ... 129s Setting up netplan-generator (1.1.1-1) ... 129s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 129s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 129s Setting up systemd-resolved (256.5-2ubuntu4) ... 129s Setting up openssh-sftp-server (1:9.7p1-7ubuntu5) ... 129s Setting up udisks2 (2.10.1-11ubuntu1) ... 129s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 129s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 129s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 129s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 129s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 129s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 129s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 129s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 129s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 129s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 129s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 129s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 129s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied 130s Setting up systemd-sysv (256.5-2ubuntu4) ... 130s Setting up openssh-server (1:9.7p1-7ubuntu5) ... 131s Setting up plymouth (24.004.60-1ubuntu11) ... 131s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 131s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 131s Setting up libfwupd2:armhf (1.9.26-2) ... 131s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ... 131s Setting up python3 (3.12.7-1) ... 132s Setting up python3-zipp (3.21.0-1) ... 132s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 132s Setting up dpkg-dev (1.22.11ubuntu3) ... 132s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ... 132s update-initramfs: deferring update (trigger activated) 132s Setting up python3-oauthlib (3.2.2-2) ... 132s Setting up python3-configobj (5.0.9-1) ... 132s Setting up python3-certifi (2024.8.30+dfsg-1) ... 132s Setting up python3-gi (3.50.0-3) ... 132s Setting up python3-idna (3.8-2) ... 133s Setting up python3-urllib3 (2.0.7-2ubuntu0.1) ... 133s Setting up python3-json-pointer (2.4-2) ... 133s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ... 133s Setting up fwupd (1.9.26-2) ... 133s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 134s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 134s fwupd.service is a disabled or a static unit not running, not starting it. 134s Setting up python3-cffi-backend:armhf (1.17.1-2) ... 134s Setting up python3-more-itertools (10.5.0-1) ... 134s Setting up python3-jaraco.functools (4.1.0-1) ... 134s Setting up python3-gdbm:armhf (3.12.7-1) ... 134s Setting up python3-problem-report (2.30.0-0ubuntu5) ... 134s Setting up ssh-import-id (5.11-0ubuntu3) ... 134s Setting up python3-jsonpatch (1.32-4) ... 134s Setting up python3-typeguard (4.4.1-1) ... 134s Setting up ufw (0.36.2-8) ... 135s Setting up python3-lazr.uri (1.0.6-4) ... 135s Setting up python3-apport (2.30.0-0ubuntu5) ... 136s Setting up python3-wadllib (2.0.0-1) ... 136s Setting up python3-netplan (1.1.1-1) ... 136s Setting up python3-lazr.restfulclient (0.14.6-2) ... 136s Setting up netplan.io (1.1.1-1) ... 136s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ... 137s Setting up apport (2.30.0-0ubuntu5) ... 137s Installing new version of config file /etc/apport/crashdb.conf ... 137s apport-autoreport.service is a disabled or a static unit not running, not starting it. 137s Processing triggers for dbus (1.14.10-4ubuntu5) ... 137s Processing triggers for shared-mime-info (2.4-5) ... 138s Processing triggers for install-info (7.1.1-1) ... 138s Processing triggers for initramfs-tools (0.142ubuntu34) ... 138s Processing triggers for libc-bin (2.40-1ubuntu3) ... 138s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 138s Processing triggers for man-db (2.12.1-3) ... 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 141s The following packages will be REMOVED: 141s libperl5.38t64* perl-modules-5.38* python3-netifaces* 141s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 141s After this operation, 41.7 MB disk space will be freed. 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61507 files and directories currently installed.) 141s Removing libperl5.38t64:armhf (5.38.2-5) ... 141s Removing perl-modules-5.38 (5.38.2-5) ... 141s Removing python3-netifaces:armhf (0.11.0-2build3) ... 141s Processing triggers for man-db (2.12.1-3) ... 142s Processing triggers for libc-bin (2.40-1ubuntu3) ... 144s autopkgtest [01:13:59]: rebooting testbed after setup commands that affected boot 213s autopkgtest [01:15:08]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 240s autopkgtest [01:15:35]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pymbar 251s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pymbar 4.0.3-2 (dsc) [2234 B] 251s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pymbar 4.0.3-2 (tar) [17.2 MB] 251s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pymbar 4.0.3-2 (diff) [3444 B] 251s gpgv: Signature made Sat Jun 29 17:20:42 2024 UTC 251s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 251s gpgv: issuer "tchet@debian.org" 251s gpgv: Can't check signature: No public key 251s dpkg-source: warning: cannot verify inline signature for ./python-pymbar_4.0.3-2.dsc: no acceptable signature found 252s autopkgtest [01:15:47]: testing package python-pymbar version 4.0.3-2 254s autopkgtest [01:15:49]: build not needed 257s autopkgtest [01:15:52]: test command1: preparing testbed 267s Reading package lists... 267s Building dependency tree... 267s Reading state information... 268s Starting pkgProblemResolver with broken count: 0 268s Starting 2 pkgProblemResolver with broken count: 0 268s Done 269s The following additional packages will be installed: 269s libblas3 libgfortran5 liblapack3 liblbfgsb0 python3-decorator 269s python3-iniconfig python3-numexpr python3-numpy python3-packaging 269s python3-pluggy python3-pymbar python3-pytest python3-scipy 269s Suggested packages: 269s gcc gfortran python-numpy-doc python3-dev python-scipy-doc 269s Recommended packages: 269s g++ | c++-compiler python3-pil 269s The following NEW packages will be installed: 269s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 269s python3-decorator python3-iniconfig python3-numexpr python3-numpy 269s python3-packaging python3-pluggy python3-pymbar python3-pytest python3-scipy 269s 0 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. 269s Need to get 23.0 MB/23.1 MB of archives. 269s After this operation, 80.6 MB of additional disk space will be used. 269s Get:1 /tmp/autopkgtest.8iFdgW/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [712 B] 269s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 269s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 269s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 270s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 270s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 270s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 270s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 270s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 270s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-numexpr armhf 2.10.1-2 [115 kB] 270s Get:11 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 270s Get:12 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 271s Get:13 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pymbar all 4.0.3-2 [80.7 kB] 271s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB] 271s Fetched 23.0 MB in 2s (13.5 MB/s) 271s Selecting previously unselected package libblas3:armhf. 271s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59567 files and directories currently installed.) 271s Preparing to unpack .../00-libblas3_3.12.0-3build2_armhf.deb ... 271s Unpacking libblas3:armhf (3.12.0-3build2) ... 271s Selecting previously unselected package libgfortran5:armhf. 271s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 271s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 271s Selecting previously unselected package liblapack3:armhf. 271s Preparing to unpack .../02-liblapack3_3.12.0-3build2_armhf.deb ... 271s Unpacking liblapack3:armhf (3.12.0-3build2) ... 271s Selecting previously unselected package liblbfgsb0:armhf. 271s Preparing to unpack .../03-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 271s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 271s Selecting previously unselected package python3-decorator. 271s Preparing to unpack .../04-python3-decorator_5.1.1-5_all.deb ... 271s Unpacking python3-decorator (5.1.1-5) ... 271s Selecting previously unselected package python3-iniconfig. 271s Preparing to unpack .../05-python3-iniconfig_1.1.1-2_all.deb ... 271s Unpacking python3-iniconfig (1.1.1-2) ... 271s Selecting previously unselected package python3-numpy. 271s Preparing to unpack .../06-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 271s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 271s Selecting previously unselected package python3-packaging. 271s Preparing to unpack .../07-python3-packaging_24.1-1_all.deb ... 271s Unpacking python3-packaging (24.1-1) ... 271s Selecting previously unselected package python3-numexpr. 271s Preparing to unpack .../08-python3-numexpr_2.10.1-2_armhf.deb ... 271s Unpacking python3-numexpr (2.10.1-2) ... 271s Selecting previously unselected package python3-pluggy. 271s Preparing to unpack .../09-python3-pluggy_1.5.0-1_all.deb ... 271s Unpacking python3-pluggy (1.5.0-1) ... 271s Selecting previously unselected package python3-scipy. 272s Preparing to unpack .../10-python3-scipy_1.13.1-5_armhf.deb ... 272s Unpacking python3-scipy (1.13.1-5) ... 272s Selecting previously unselected package python3-pymbar. 272s Preparing to unpack .../11-python3-pymbar_4.0.3-2_all.deb ... 272s Unpacking python3-pymbar (4.0.3-2) ... 272s Selecting previously unselected package python3-pytest. 272s Preparing to unpack .../12-python3-pytest_8.3.3-1_all.deb ... 272s Unpacking python3-pytest (8.3.3-1) ... 272s Selecting previously unselected package autopkgtest-satdep. 272s Preparing to unpack .../13-1-autopkgtest-satdep.deb ... 272s Unpacking autopkgtest-satdep (0) ... 272s Setting up python3-iniconfig (1.1.1-2) ... 272s Setting up python3-decorator (5.1.1-5) ... 272s Setting up libblas3:armhf (3.12.0-3build2) ... 272s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 272s Setting up python3-packaging (24.1-1) ... 273s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 273s Setting up python3-pluggy (1.5.0-1) ... 273s Setting up liblapack3:armhf (3.12.0-3build2) ... 273s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 273s Setting up python3-pytest (8.3.3-1) ... 273s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 275s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 275s Setting up python3-scipy (1.13.1-5) ... 279s Setting up python3-numexpr (2.10.1-2) ... 279s Setting up python3-pymbar (4.0.3-2) ... 279s Setting up autopkgtest-satdep (0) ... 279s Processing triggers for man-db (2.12.1-3) ... 280s Processing triggers for libc-bin (2.40-1ubuntu3) ... 291s (Reading database ... 62154 files and directories currently installed.) 291s Removing autopkgtest-satdep (0) ... 298s autopkgtest [01:16:33]: test command1: rm pymbar/*.py && pytest-3 298s autopkgtest [01:16:33]: test command1: [----------------------- 301s ============================= test session starts ============================== 301s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 301s rootdir: /tmp/autopkgtest.8iFdgW/build.VhD/src 301s configfile: setup.cfg 301s plugins: typeguard-4.4.1 301s collected 150 items 301s 301s pymbar/tests/test_bar.py ..... [ 3%] 301s pymbar/tests/test_exp.py .... [ 6%] 308s pymbar/tests/test_fes.py ..xxsssssssss.....xxssssssss [ 24%] 313s pymbar/tests/test_mbar.py ...x..........x...............x..........xxxx. [ 55%] 313s ..x..................x [ 70%] 337s pymbar/tests/test_mbar_solvers.py ................ [ 80%] 342s pymbar/tests/test_timeseries.py ..ss.ss.. [ 86%] 343s pymbar/tests/test_utils.py ....xx..xx..xx..xx.. [100%] 343s 343s =============================== warnings summary =============================== 343s pymbar/tests/test_mbar_solvers.py:24 343s /tmp/autopkgtest.8iFdgW/build.VhD/src/pymbar/tests/test_mbar_solvers.py:24: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 343s @pytest.mark.flaky(max_runs=2) # Uses flaky plugin for pytest 343s 343s pymbar/tests/test_mbar_solvers.py:67 343s /tmp/autopkgtest.8iFdgW/build.VhD/src/pymbar/tests/test_mbar_solvers.py:67: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 343s pytest.param("TNC", marks=pytest.mark.flaky(max_runs=2)), # This one is flaky 343s 343s pymbar/tests/test_fes.py: 120 warnings 343s /usr/lib/python3/dist-packages/pymbar/fes.py:2246: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 343s g[i - 1] = N * np.dot(w_n, db_c[i](x_n)) 343s 343s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 343s ========== 108 passed, 21 skipped, 21 xfailed, 122 warnings in 41.99s ========== 343s autopkgtest [01:17:18]: test command1: -----------------------] 347s autopkgtest [01:17:22]: test command1: - - - - - - - - - - results - - - - - - - - - - 347s command1 PASS 351s autopkgtest [01:17:26]: test autodep8-python3: preparing testbed 403s autopkgtest [01:18:18]: testbed dpkg architecture: armhf 405s autopkgtest [01:18:20]: testbed apt version: 2.9.8 405s autopkgtest [01:18:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 413s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 413s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [990 kB] 414s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 414s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.6 kB] 414s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 414s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [103 kB] 414s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [667 kB] 414s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 414s Fetched 1975 kB in 1s (2275 kB/s) 414s Reading package lists... 429s tee: /proc/self/fd/2: Permission denied 481s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 481s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 481s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 481s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 482s Reading package lists... 483s Reading package lists... 483s Building dependency tree... 483s Reading state information... 483s Calculating upgrade... 484s The following packages were automatically installed and are no longer required: 484s libperl5.38t64 perl-modules-5.38 python3-netifaces 484s Use 'apt autoremove' to remove them. 484s The following NEW packages will be installed: 484s libperl5.40 perl-modules-5.40 python3.13-gdbm systemd-cryptsetup 484s The following packages will be upgraded: 484s apport apport-core-dump-handler base-files base-passwd bash-completion 484s dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info 484s install-info iproute2 libarchive13t64 libatomic1 libattr1 484s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 484s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 484s libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libdb5.3t64 484s libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 libevdev2 484s libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 libgnutls30t64 484s libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common 484s libkeyutils1 libldap-common libldap2 liblocale-gettext-perl libmaxminddb0 484s libmnl0 libnetfilter-conntrack3 libnetplan1 libnewt0.52 libnghttp2-14 484s libnspr4 libnss-systemd libnvme1t64 libpam-systemd libpipeline1 libplymouth5 484s libpng16-16t64 libpopt0 libpython3-stdlib libpython3.12-minimal 484s libpython3.12-stdlib libsgutils2-1.46-2 libssh2-1t64 libstdc++6 484s libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl 484s libtraceevent1 libtraceevent1-plugin libudev1 libudisks2-0 liburcu8t64 484s libutempter0 libuv1t64 libx11-6 libx11-data libxau6 libxmlb2 mawk 484s motd-news-config nano netplan-generator netplan.io openssh-client 484s openssh-server openssh-sftp-server pci.ids perl perl-base plymouth 484s plymouth-theme-ubuntu-text python3 python3-apport python3-certifi 484s python3-cffi-backend python3-configobj python3-gdbm python3-gi python3-idna 484s python3-jaraco.functools python3-json-pointer python3-jsonpatch 484s python3-lazr.restfulclient python3-lazr.uri python3-minimal 484s python3-more-itertools python3-netplan python3-newt python3-oauthlib 484s python3-problem-report python3-typeguard python3-urllib3 python3-wadllib 484s python3-zipp python3.12 python3.12-gdbm python3.12-minimal sg3-utils 484s sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv 484s systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny 484s whiptail xxd 484s 143 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 484s Need to get 45.5 MB of archives. 484s After this operation, 43.2 MB of additional disk space will be used. 484s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B] 484s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB] 484s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB] 484s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB] 485s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB] 485s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB] 485s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB] 485s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 485s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 485s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 485s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 485s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB] 485s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 485s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 485s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB] 485s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB] 485s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB] 485s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB] 485s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB] 485s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 485s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB] 485s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB] 485s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB] 485s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB] 485s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB] 485s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB] 485s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB] 485s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB] 485s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB] 485s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB] 485s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB] 485s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB] 485s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB] 485s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB] 485s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB] 486s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB] 486s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB] 486s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB] 486s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB] 486s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB] 486s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B] 486s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB] 486s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB] 486s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB] 486s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB] 486s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 486s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 486s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB] 486s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB] 486s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 486s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 486s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 486s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB] 486s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB] 486s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 486s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB] 486s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB] 486s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 486s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB] 486s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB] 486s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB] 486s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB] 486s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB] 486s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 486s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 486s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB] 486s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 486s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 486s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 486s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 486s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB] 486s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 486s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B] 486s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB] 486s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 486s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB] 486s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB] 486s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB] 486s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 486s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB] 486s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB] 486s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 486s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 486s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB] 486s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB] 486s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB] 486s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB] 486s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 486s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 486s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB] 486s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B] 486s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB] 486s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB] 486s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 486s Get:95 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 486s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB] 486s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB] 486s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB] 486s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB] 486s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB] 486s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 486s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB] 487s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 487s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 487s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 487s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB] 487s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 487s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB] 487s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB] 487s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB] 487s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B] 487s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB] 487s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B] 487s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB] 487s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB] 487s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB] 487s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB] 487s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B] 487s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB] 487s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB] 487s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 487s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 487s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 487s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB] 487s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 487s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB] 487s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB] 487s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB] 487s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 487s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B] 487s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 487s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB] 487s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB] 487s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB] 487s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 487s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB] 487s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 487s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB] 487s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 487s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB] 487s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB] 487s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB] 487s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB] 487s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 487s Get:145 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 488s Get:146 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB] 488s Get:147 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB] 488s Preconfiguring packages ... 488s Fetched 45.5 MB in 4s (12.1 MB/s) 488s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 488s Preparing to unpack .../motd-news-config_13.5ubuntu3_all.deb ... 488s Unpacking motd-news-config (13.5ubuntu3) over (13.3ubuntu6) ... 488s Preparing to unpack .../base-files_13.5ubuntu3_armhf.deb ... 488s Unpacking base-files (13.5ubuntu3) over (13.3ubuntu6) ... 488s Setting up base-files (13.5ubuntu3) ... 488s Installing new version of config file /etc/issue ... 488s Installing new version of config file /etc/issue.net ... 488s Installing new version of config file /etc/lsb-release ... 489s motd-news.service is a disabled or a static unit not running, not starting it. 489s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 489s Preparing to unpack .../dpkg_1.22.11ubuntu3_armhf.deb ... 489s Unpacking dpkg (1.22.11ubuntu3) over (1.22.11ubuntu1) ... 489s Setting up dpkg (1.22.11ubuntu3) ... 490s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 490s Preparing to unpack .../perl_5.40.0-7_armhf.deb ... 490s Unpacking perl (5.40.0-7) over (5.38.2-5) ... 490s Selecting previously unselected package perl-modules-5.40. 490s Preparing to unpack .../perl-modules-5.40_5.40.0-7_all.deb ... 490s Unpacking perl-modules-5.40 (5.40.0-7) ... 490s Selecting previously unselected package libperl5.40:armhf. 490s Preparing to unpack .../libperl5.40_5.40.0-7_armhf.deb ... 490s Unpacking libperl5.40:armhf (5.40.0-7) ... 490s Preparing to unpack .../perl-base_5.40.0-7_armhf.deb ... 490s Unpacking perl-base (5.40.0-7) over (5.38.2-5) ... 490s Setting up perl-base (5.40.0-7) ... 490s (Reading database ... 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/usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 502s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 503s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 503s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 503s Setting up libblockdev3:armhf (3.2.1-1) ... 503s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 503s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 503s Setting up libblockdev-part3:armhf (3.2.1-1) ... 503s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 503s update-initramfs: deferring update (trigger activated) 503s Setting up libperl5.40:armhf (5.40.0-7) ... 503s Setting up perl (5.40.0-7) ... 503s Setting up systemd-cryptsetup (256.5-2ubuntu4) ... 503s Setting up libnvme1t64 (1.11-1) ... 503s Setting up systemd-timesyncd (256.5-2ubuntu4) ... 504s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 504s Setting up 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'/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 505s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 505s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 505s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 505s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 505s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 505s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 505s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 505s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 505s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 505s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 505s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied 505s Setting up systemd-sysv (256.5-2ubuntu4) ... 505s Setting up openssh-server (1:9.7p1-7ubuntu5) ... 506s Setting up plymouth (24.004.60-1ubuntu11) ... 507s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 507s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 507s Setting up libfwupd2:armhf (1.9.26-2) ... 507s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ... 507s Setting up python3 (3.12.7-1) ... 507s Setting up python3-zipp (3.21.0-1) ... 508s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 508s Setting up dpkg-dev (1.22.11ubuntu3) ... 508s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ... 508s update-initramfs: deferring update (trigger activated) 508s Setting up python3-oauthlib (3.2.2-2) ... 508s Setting up python3-configobj (5.0.9-1) ... 508s Setting up python3-certifi (2024.8.30+dfsg-1) ... 508s Setting up python3-gi (3.50.0-3) ... 508s Setting up python3-idna (3.8-2) ... 508s Setting up python3-urllib3 (2.0.7-2ubuntu0.1) ... 509s Setting up python3-json-pointer (2.4-2) ... 509s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ... 509s Setting up fwupd (1.9.26-2) ... 509s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 509s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 509s fwupd.service is a disabled or a static unit not running, not starting it. 509s Setting up python3-cffi-backend:armhf (1.17.1-2) ... 509s Setting up python3-more-itertools (10.5.0-1) ... 510s Setting up python3-jaraco.functools (4.1.0-1) ... 510s Setting up python3-gdbm:armhf (3.12.7-1) ... 510s Setting up python3-problem-report (2.30.0-0ubuntu5) ... 510s Setting up ssh-import-id (5.11-0ubuntu3) ... 510s Setting up python3-jsonpatch (1.32-4) ... 510s Setting up python3-typeguard (4.4.1-1) ... 510s Setting up ufw (0.36.2-8) ... 511s Setting up python3-lazr.uri (1.0.6-4) ... 511s Setting up python3-apport (2.30.0-0ubuntu5) ... 511s Setting up python3-wadllib (2.0.0-1) ... 511s Setting up python3-netplan (1.1.1-1) ... 512s Setting up python3-lazr.restfulclient (0.14.6-2) ... 512s Setting up netplan.io (1.1.1-1) ... 512s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ... 512s Setting up apport (2.30.0-0ubuntu5) ... 512s Installing new version of config file /etc/apport/crashdb.conf ... 513s apport-autoreport.service is a disabled or a static unit not running, not starting it. 513s Processing triggers for dbus (1.14.10-4ubuntu5) ... 513s Processing triggers for shared-mime-info (2.4-5) ... 513s Processing triggers for install-info (7.1.1-1) ... 513s Processing triggers for initramfs-tools (0.142ubuntu34) ... 513s Processing triggers for libc-bin (2.40-1ubuntu3) ... 514s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 514s Processing triggers for man-db (2.12.1-3) ... 515s Reading package lists... 516s Building dependency tree... 516s Reading state information... 516s The following packages will be REMOVED: 516s libperl5.38t64* perl-modules-5.38* python3-netifaces* 517s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 517s After this operation, 41.7 MB disk space will be freed. 517s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61507 files and directories currently installed.) 517s Removing libperl5.38t64:armhf (5.38.2-5) ... 517s Removing perl-modules-5.38 (5.38.2-5) ... 517s Removing python3-netifaces:armhf (0.11.0-2build3) ... 517s Processing triggers for man-db (2.12.1-3) ... 517s Processing triggers for libc-bin (2.40-1ubuntu3) ... 519s autopkgtest [01:20:14]: rebooting testbed after setup commands that affected boot 620s Reading package lists... 620s Building dependency tree... 620s Reading state information... 620s Starting pkgProblemResolver with broken count: 0 620s Starting 2 pkgProblemResolver with broken count: 0 620s Done 621s The following additional packages will be installed: 621s libblas3 libgfortran5 liblapack3 liblbfgsb0 libpython3.13-minimal 621s libpython3.13-stdlib python3-all python3-decorator python3-numexpr 621s python3-numpy python3-packaging python3-pymbar python3-scipy python3.13 621s python3.13-minimal 621s Suggested packages: 621s gcc gfortran python-numpy-doc python3-dev python3-pytest python-scipy-doc 621s python3.13-venv python3.13-doc binfmt-support 621s Recommended packages: 621s g++ | c++-compiler python3-pil 621s The following NEW packages will be installed: 621s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 621s libpython3.13-minimal libpython3.13-stdlib python3-all python3-decorator 621s python3-numexpr python3-numpy python3-packaging python3-pymbar python3-scipy 621s python3.13 python3.13-minimal 621s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 621s Need to get 28.2 MB/28.2 MB of archives. 621s After this operation, 98.3 MB of additional disk space will be used. 621s Get:1 /tmp/autopkgtest.8iFdgW/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [716 B] 621s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 622s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 623s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 623s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 623s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 623s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 623s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 624s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 624s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 624s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 624s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 624s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 624s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-numexpr armhf 2.10.1-2 [115 kB] 624s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 625s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pymbar all 4.0.3-2 [80.7 kB] 626s Fetched 28.2 MB in 4s (6823 kB/s) 626s Selecting previously unselected package libpython3.13-minimal:armhf. 626s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59567 files and directories currently installed.) 626s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ... 626s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 626s Selecting previously unselected package python3.13-minimal. 626s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ... 626s Unpacking python3.13-minimal (3.13.0-2) ... 626s Selecting previously unselected package libblas3:armhf. 626s Preparing to unpack .../02-libblas3_3.12.0-3build2_armhf.deb ... 626s Unpacking libblas3:armhf (3.12.0-3build2) ... 626s Selecting previously unselected package libgfortran5:armhf. 626s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 626s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 626s Selecting previously unselected package liblapack3:armhf. 626s Preparing to unpack .../04-liblapack3_3.12.0-3build2_armhf.deb ... 626s Unpacking liblapack3:armhf (3.12.0-3build2) ... 626s Selecting previously unselected package liblbfgsb0:armhf. 626s Preparing to unpack .../05-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 626s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 626s Selecting previously unselected package libpython3.13-stdlib:armhf. 626s Preparing to unpack .../06-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 626s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 626s Selecting previously unselected package python3.13. 626s Preparing to unpack .../07-python3.13_3.13.0-2_armhf.deb ... 626s Unpacking python3.13 (3.13.0-2) ... 626s Selecting previously unselected package python3-all. 626s Preparing to unpack .../08-python3-all_3.12.7-1_armhf.deb ... 626s Unpacking python3-all (3.12.7-1) ... 626s Selecting previously unselected package python3-decorator. 626s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 626s Unpacking python3-decorator (5.1.1-5) ... 626s Selecting previously unselected package python3-numpy. 626s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 626s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 626s Selecting previously unselected package python3-packaging. 626s Preparing to unpack .../11-python3-packaging_24.1-1_all.deb ... 626s Unpacking python3-packaging (24.1-1) ... 626s Selecting previously unselected package python3-numexpr. 626s Preparing to unpack .../12-python3-numexpr_2.10.1-2_armhf.deb ... 626s Unpacking python3-numexpr (2.10.1-2) ... 626s Selecting previously unselected package python3-scipy. 626s Preparing to unpack .../13-python3-scipy_1.13.1-5_armhf.deb ... 626s Unpacking python3-scipy (1.13.1-5) ... 627s Selecting previously unselected package python3-pymbar. 627s Preparing to unpack .../14-python3-pymbar_4.0.3-2_all.deb ... 627s Unpacking python3-pymbar (4.0.3-2) ... 627s Selecting previously unselected package autopkgtest-satdep. 627s Preparing to unpack .../15-2-autopkgtest-satdep.deb ... 627s Unpacking autopkgtest-satdep (0) ... 627s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 627s Setting up python3-decorator (5.1.1-5) ... 627s Setting up libblas3:armhf (3.12.0-3build2) ... 627s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 627s Setting up python3-packaging (24.1-1) ... 628s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 628s Setting up python3.13-minimal (3.13.0-2) ... 628s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... 628s Setting up liblapack3:armhf (3.12.0-3build2) ... 628s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 628s Setting up python3.13 (3.13.0-2) ... 630s Setting up python3-all (3.12.7-1) ... 630s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 633s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 633s Setting up python3-scipy (1.13.1-5) ... 641s Setting up python3-numexpr (2.10.1-2) ... 641s Setting up python3-pymbar (4.0.3-2) ... 641s Setting up autopkgtest-satdep (0) ... 641s Processing triggers for systemd (256.5-2ubuntu4) ... 641s Processing triggers for man-db (2.12.1-3) ... 641s Processing triggers for libc-bin (2.40-1ubuntu3) ... 653s (Reading database ... 62748 files and directories currently installed.) 653s Removing autopkgtest-satdep (0) ... 666s autopkgtest [01:22:41]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pymbar; print(pymbar)" ; done 666s autopkgtest [01:22:41]: test autodep8-python3: [----------------------- 668s Testing with python3.13: 668s Traceback (most recent call last): 668s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 668s from . import multiarray 668s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 668s from . import overrides 668s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 668s from numpy.core._multiarray_umath import ( 668s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 668s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 668s 668s During handling of the above exception, another exception occurred: 668s 668s Traceback (most recent call last): 668s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 668s from numpy.__config__ import show as show_config 668s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 668s from numpy.core._multiarray_umath import ( 668s ...<3 lines>... 668s ) 668s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 668s raise ImportError(msg) 668s ImportError: 668s 668s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 668s 668s Importing the numpy C-extensions failed. This error can happen for 668s many reasons, often due to issues with your setup or how NumPy was 668s installed. 668s 668s We have compiled some common reasons and troubleshooting tips at: 668s 668s https://numpy.org/devdocs/user/troubleshooting-importerror.html 668s 668s Please note and check the following: 668s 668s * The Python version is: Python3.13 from "/usr/bin/python3.13" 668s * The NumPy version is: "1.26.4" 668s 668s and make sure that they are the versions you expect. 668s Please carefully study the documentation linked above for further help. 668s 668s Original error was: No module named 'numpy.core._multiarray_umath' 668s 668s 668s The above exception was the direct cause of the following exception: 668s 668s Traceback (most recent call last): 668s File "", line 1, in 668s import pymbar; print(pymbar) 668s ^^^^^^^^^^^^^ 668s File "/usr/lib/python3/dist-packages/pymbar/__init__.py", line 31, in 668s from . import timeseries, testsystems, confidenceintervals 668s File "/usr/lib/python3/dist-packages/pymbar/timeseries.py", line 60, in 668s import numpy as np 668s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 668s raise ImportError(msg) from e 668s ImportError: Error importing numpy: you should not try to import numpy from 668s its source directory; please exit the numpy source tree, and relaunch 668s your python interpreter from there. 668s autopkgtest [01:22:43]: test autodep8-python3: -----------------------] 673s autopkgtest [01:22:48]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 673s autodep8-python3 FAIL non-zero exit status 1 676s autopkgtest [01:22:51]: @@@@@@@@@@@@@@@@@@@@ summary 676s command1 PASS 676s autodep8-python3 FAIL non-zero exit status 1