0s autopkgtest [01:55:36]: starting date and time: 2024-11-17 01:55:36+0000 0s autopkgtest [01:55:36]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [01:55:36]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9_wjnf2p/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python-packaging --apt-upgrade python-pyfaidx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python-packaging/24.2-1 -- lxd -r lxd-armhf-10.145.243.51 lxd-armhf-10.145.243.51:autopkgtest/ubuntu/plucky/armhf 54s autopkgtest [01:56:30]: testbed dpkg architecture: armhf 56s autopkgtest [01:56:32]: testbed apt version: 2.9.8 56s autopkgtest [01:56:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 66s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [982 kB] 69s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 69s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [88.9 kB] 70s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.1 kB] 70s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [137 kB] 70s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [723 kB] 71s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4736 B] 71s Fetched 2032 kB in 7s (293 kB/s) 71s Reading package lists... 90s tee: /proc/self/fd/2: Permission denied 126s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 126s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 126s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 126s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 128s Reading package lists... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade... 129s The following NEW packages will be installed: 129s python3.13-gdbm 129s The following packages will be upgraded: 129s debianutils dmidecode libftdi1-2 libnvme1t64 python3-gdbm 129s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 129s Need to get 290 kB of archives. 129s After this operation, 92.2 kB of additional disk space will be used. 129s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf debianutils armhf 5.21 [91.8 kB] 129s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf dmidecode armhf 3.6-2 [60.8 kB] 129s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 129s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 129s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7build1 [25.8 kB] 129s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-2 [73.8 kB] 130s Fetched 290 kB in 0s (710 kB/s) 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59573 files and directories currently installed.) 130s Preparing to unpack .../debianutils_5.21_armhf.deb ... 130s Unpacking debianutils (5.21) over (5.20) ... 130s Setting up debianutils (5.21) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59573 files and directories currently installed.) 130s Preparing to unpack .../dmidecode_3.6-2_armhf.deb ... 130s Unpacking dmidecode (3.6-2) over (3.6-1) ... 130s Selecting previously unselected package python3.13-gdbm. 130s Preparing to unpack .../python3.13-gdbm_3.13.0-2_armhf.deb ... 130s Unpacking python3.13-gdbm (3.13.0-2) ... 130s Preparing to unpack .../python3-gdbm_3.12.7-1_armhf.deb ... 130s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 130s Preparing to unpack .../libftdi1-2_1.5-7build1_armhf.deb ... 130s Unpacking libftdi1-2:armhf (1.5-7build1) over (1.5-7) ... 130s Preparing to unpack .../libnvme1t64_1.11-2_armhf.deb ... 130s Unpacking libnvme1t64 (1.11-2) over (1.11-1) ... 130s Setting up libftdi1-2:armhf (1.5-7build1) ... 130s Setting up libnvme1t64 (1.11-2) ... 130s Setting up dmidecode (3.6-2) ... 130s Setting up python3.13-gdbm (3.13.0-2) ... 130s Setting up python3-gdbm:armhf (3.12.7-1) ... 130s Processing triggers for man-db (2.13.0-1) ... 131s Processing triggers for libc-bin (2.40-1ubuntu3) ... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s autopkgtest [01:57:51]: rebooting testbed after setup commands that affected boot 201s autopkgtest [01:58:57]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 227s autopkgtest [01:59:23]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyfaidx 241s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.3-1 (dsc) [2544 B] 241s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.3-1 (tar) [96.5 kB] 241s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.3-1 (diff) [7096 B] 241s gpgv: Signature made Wed Oct 16 19:20:44 2024 UTC 241s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 241s gpgv: issuer "emollier@debian.org" 241s gpgv: Can't check signature: No public key 241s dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.3-1.dsc: no acceptable signature found 241s autopkgtest [01:59:37]: testing package python-pyfaidx version 0.8.1.3-1 243s autopkgtest [01:59:39]: build not needed 246s autopkgtest [01:59:42]: test run-unit-test: preparing testbed 256s Reading package lists... 256s Building dependency tree... 256s Reading state information... 256s Starting pkgProblemResolver with broken count: 0 256s Starting 2 pkgProblemResolver with broken count: 0 256s Done 257s The following additional packages will be installed: 257s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 257s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libfreetype6 257s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhtscodecs2 257s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 257s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 257s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 257s python-pyfaidx-examples python3-all python3-biopython python3-cairo 257s python3-freetype python3-importlib-metadata python3-iniconfig python3-numpy 257s python3-packaging python3-pil python3-pluggy python3-pyfaidx python3-pytest 257s python3-reportlab python3-rlpycairo sgml-base tabix w3c-sgml-lib x11-common 257s xfonts-encodings xfonts-utils xml-core 257s Suggested packages: 257s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 257s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 257s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 257s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 257s gcc gfortran python-numpy-doc python3-dev python-pil-doc pdf-viewer 257s python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm 257s sgml-base-doc debhelper 257s Recommended packages: 257s python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra 257s The following NEW packages will be installed: 257s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono 257s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 257s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 257s libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 257s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 257s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 257s libxrender1 python-pyfaidx-examples python3-all python3-biopython 257s python3-cairo python3-freetype python3-importlib-metadata python3-iniconfig 257s python3-numpy python3-packaging python3-pil python3-pluggy python3-pyfaidx 257s python3-pytest python3-reportlab python3-rlpycairo sgml-base tabix 257s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 257s 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. 257s Need to get 26.7 MB/26.7 MB of archives. 257s After this operation, 75.4 MB of additional disk space will be used. 257s Get:1 /tmp/autopkgtest.XMR02S/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [748 B] 257s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB] 258s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 258s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 258s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 258s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 258s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 258s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 258s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 258s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 258s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 258s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 258s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 258s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 258s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 258s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 258s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 258s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 258s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 258s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 258s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 258s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 258s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 258s Get:24 http://ftpmaster.internal/ubuntu plucky/universe armhf libhtscodecs2 armhf 1.6.1-1 [67.9 kB] 258s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 258s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 258s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 258s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 259s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 259s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 259s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB] 259s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 259s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 259s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 259s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 259s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 259s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 259s Get:38 http://ftpmaster.internal/ubuntu plucky/universe armhf python-pyfaidx-examples all 0.8.1.3-1 [38.6 kB] 259s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.12.6-0ubuntu1 [886 B] 259s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 259s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 259s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu1 [428 kB] 259s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cairo armhf 1.26.1-2 [114 kB] 259s Get:44 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-freetype all 2.5.1-1 [92.3 kB] 259s Get:45 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 259s Get:46 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-reportlab all 4.2.5-1 [1107 kB] 259s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB] 259s Get:48 http://ftpmaster.internal/ubuntu plucky/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 259s Get:49 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-biopython armhf 1.84+dfsg-4 [1666 kB] 259s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf python3-importlib-metadata all 8.5.0-1 [20.7 kB] 259s Get:51 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 259s Get:52 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-packaging all 24.2-1 [51.5 kB] 259s Get:53 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 259s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 259s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB] 259s Get:56 http://ftpmaster.internal/ubuntu plucky/universe armhf tabix armhf 1.20+ds-1 [432 kB] 259s Fetched 26.7 MB in 2s (16.5 MB/s) 259s Selecting previously unselected package sgml-base. 259s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59579 files and directories currently installed.) 259s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 259s Unpacking sgml-base (1.31) ... 259s Selecting previously unselected package fonts-dejavu-mono. 259s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 259s Unpacking fonts-dejavu-mono (2.37-8) ... 259s Selecting previously unselected package fonts-dejavu-core. 259s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 259s Unpacking fonts-dejavu-core (2.37-8) ... 260s Selecting previously unselected package libfontenc1:armhf. 260s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 260s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 260s Selecting previously unselected package libfreetype6:armhf. 260s Preparing to unpack .../04-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 260s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 260s Selecting previously unselected package x11-common. 260s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu3_all.deb ... 260s Unpacking x11-common (1:7.7+23ubuntu3) ... 260s Selecting previously unselected package xfonts-encodings. 260s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 260s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 260s Selecting previously unselected package xfonts-utils. 260s Preparing to unpack .../07-xfonts-utils_1%3a7.7+7_armhf.deb ... 260s Unpacking xfonts-utils (1:7.7+7) ... 260s Selecting previously unselected package fonts-urw-base35. 260s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ... 260s Unpacking fonts-urw-base35 (20200910-8) ... 260s Selecting previously unselected package fontconfig-config. 260s Preparing to unpack .../09-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 260s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 260s Selecting previously unselected package libblas3:armhf. 260s Preparing to unpack .../10-libblas3_3.12.0-3build2_armhf.deb ... 260s Unpacking libblas3:armhf (3.12.0-3build2) ... 260s Selecting previously unselected package libfontconfig1:armhf. 260s Preparing to unpack .../11-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 260s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 260s Selecting previously unselected package libpixman-1-0:armhf. 260s Preparing to unpack .../12-libpixman-1-0_0.44.0-3_armhf.deb ... 260s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 260s Selecting previously unselected package libxcb-render0:armhf. 260s Preparing to unpack .../13-libxcb-render0_1.17.0-2_armhf.deb ... 260s Unpacking libxcb-render0:armhf (1.17.0-2) ... 260s Selecting previously unselected package libxcb-shm0:armhf. 260s Preparing to unpack .../14-libxcb-shm0_1.17.0-2_armhf.deb ... 260s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 260s Selecting previously unselected package libxrender1:armhf. 260s Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 260s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 260s Selecting previously unselected package libcairo2:armhf. 260s Preparing to unpack .../16-libcairo2_1.18.2-2_armhf.deb ... 260s Unpacking libcairo2:armhf (1.18.2-2) ... 260s Selecting previously unselected package libdeflate0:armhf. 260s Preparing to unpack .../17-libdeflate0_1.22-1_armhf.deb ... 260s Unpacking libdeflate0:armhf (1.22-1) ... 260s Selecting previously unselected package libgfortran5:armhf. 261s Preparing to unpack .../18-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 261s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 261s Selecting previously unselected package libgomp1:armhf. 261s Preparing to unpack .../19-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 261s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 261s Selecting previously unselected package libgraphite2-3:armhf. 261s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 261s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 261s Selecting previously unselected package libharfbuzz0b:armhf. 261s Preparing to unpack .../21-libharfbuzz0b_10.0.1-1_armhf.deb ... 261s Unpacking libharfbuzz0b:armhf (10.0.1-1) ... 261s Selecting previously unselected package libhtscodecs2:armhf. 261s Preparing to unpack .../22-libhtscodecs2_1.6.1-1_armhf.deb ... 261s Unpacking libhtscodecs2:armhf (1.6.1-1) ... 261s Selecting previously unselected package libimagequant0:armhf. 261s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_armhf.deb ... 261s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 261s Selecting previously unselected package libjpeg-turbo8:armhf. 261s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 261s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 261s Selecting previously unselected package libjpeg8:armhf. 261s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_armhf.deb ... 261s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 261s Selecting previously unselected package liblapack3:armhf. 261s Preparing to unpack .../26-liblapack3_3.12.0-3build2_armhf.deb ... 261s Unpacking liblapack3:armhf (3.12.0-3build2) ... 261s Selecting previously unselected package liblcms2-2:armhf. 261s Preparing to unpack .../27-liblcms2-2_2.16-2_armhf.deb ... 261s Unpacking liblcms2-2:armhf (2.16-2) ... 261s Selecting previously unselected package liblerc4:armhf. 261s Preparing to unpack .../28-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 261s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 261s Selecting previously unselected package libraqm0:armhf. 261s Preparing to unpack .../29-libraqm0_0.10.1-1build1_armhf.deb ... 261s Unpacking libraqm0:armhf (0.10.1-1build1) ... 261s Selecting previously unselected package libsharpyuv0:armhf. 261s Preparing to unpack .../30-libsharpyuv0_1.4.0-0.1_armhf.deb ... 261s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 261s Selecting previously unselected package libjbig0:armhf. 261s Preparing to unpack .../31-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 261s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 261s Selecting previously unselected package libwebp7:armhf. 261s Preparing to unpack .../32-libwebp7_1.4.0-0.1_armhf.deb ... 261s Unpacking libwebp7:armhf (1.4.0-0.1) ... 261s Selecting previously unselected package libtiff6:armhf. 261s Preparing to unpack .../33-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 261s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 261s Selecting previously unselected package libwebpdemux2:armhf. 261s Preparing to unpack .../34-libwebpdemux2_1.4.0-0.1_armhf.deb ... 261s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 261s Selecting previously unselected package libwebpmux3:armhf. 261s Preparing to unpack .../35-libwebpmux3_1.4.0-0.1_armhf.deb ... 261s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 261s Selecting previously unselected package python-pyfaidx-examples. 261s Preparing to unpack .../36-python-pyfaidx-examples_0.8.1.3-1_all.deb ... 261s Unpacking python-pyfaidx-examples (0.8.1.3-1) ... 261s Selecting previously unselected package python3-all. 261s Preparing to unpack .../37-python3-all_3.12.6-0ubuntu1_armhf.deb ... 261s Unpacking python3-all (3.12.6-0ubuntu1) ... 261s Selecting previously unselected package python3-numpy. 261s Preparing to unpack .../38-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 261s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 261s Selecting previously unselected package libopenjp2-7:armhf. 261s Preparing to unpack .../39-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ... 261s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 261s Selecting previously unselected package python3-pil:armhf. 261s Preparing to unpack .../40-python3-pil_10.4.0-1ubuntu1_armhf.deb ... 261s Unpacking python3-pil:armhf (10.4.0-1ubuntu1) ... 261s Selecting previously unselected package python3-cairo. 261s Preparing to unpack .../41-python3-cairo_1.26.1-2_armhf.deb ... 261s Unpacking python3-cairo (1.26.1-2) ... 261s Selecting previously unselected package python3-freetype. 261s Preparing to unpack .../42-python3-freetype_2.5.1-1_all.deb ... 261s Unpacking python3-freetype (2.5.1-1) ... 262s Selecting previously unselected package python3-rlpycairo. 262s Preparing to unpack .../43-python3-rlpycairo_0.3.0-3_all.deb ... 262s Unpacking python3-rlpycairo (0.3.0-3) ... 262s Selecting previously unselected package python3-reportlab. 262s Preparing to unpack .../44-python3-reportlab_4.2.5-1_all.deb ... 262s Unpacking python3-reportlab (4.2.5-1) ... 262s Selecting previously unselected package xml-core. 262s Preparing to unpack .../45-xml-core_0.19_all.deb ... 262s Unpacking xml-core (0.19) ... 262s Selecting previously unselected package w3c-sgml-lib. 262s Preparing to unpack .../46-w3c-sgml-lib_1.3-3_all.deb ... 262s Unpacking w3c-sgml-lib (1.3-3) ... 262s Selecting previously unselected package python3-biopython. 262s Preparing to unpack .../47-python3-biopython_1.84+dfsg-4_armhf.deb ... 262s Unpacking python3-biopython (1.84+dfsg-4) ... 262s Selecting previously unselected package python3-importlib-metadata. 262s Preparing to unpack .../48-python3-importlib-metadata_8.5.0-1_all.deb ... 262s Unpacking python3-importlib-metadata (8.5.0-1) ... 262s Selecting previously unselected package python3-iniconfig. 262s Preparing to unpack .../49-python3-iniconfig_1.1.1-2_all.deb ... 262s Unpacking python3-iniconfig (1.1.1-2) ... 262s Selecting previously unselected package python3-packaging. 262s Preparing to unpack .../50-python3-packaging_24.2-1_all.deb ... 262s Unpacking python3-packaging (24.2-1) ... 262s Selecting previously unselected package python3-pluggy. 262s Preparing to unpack .../51-python3-pluggy_1.5.0-1_all.deb ... 262s Unpacking python3-pluggy (1.5.0-1) ... 262s Selecting previously unselected package python3-pyfaidx. 262s Preparing to unpack .../52-python3-pyfaidx_0.8.1.3-1_all.deb ... 262s Unpacking python3-pyfaidx (0.8.1.3-1) ... 262s Selecting previously unselected package python3-pytest. 262s Preparing to unpack .../53-python3-pytest_8.3.3-1_all.deb ... 262s Unpacking python3-pytest (8.3.3-1) ... 262s Selecting previously unselected package tabix. 262s Preparing to unpack .../54-tabix_1.20+ds-1_armhf.deb ... 262s Unpacking tabix (1.20+ds-1) ... 262s Selecting previously unselected package autopkgtest-satdep. 262s Preparing to unpack .../55-1-autopkgtest-satdep.deb ... 262s Unpacking autopkgtest-satdep (0) ... 262s Setting up libhtscodecs2:armhf (1.6.1-1) ... 262s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 262s Setting up liblcms2-2:armhf (2.16-2) ... 262s Setting up python3-iniconfig (1.1.1-2) ... 262s Setting up libpixman-1-0:armhf (0.44.0-3) ... 262s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 262s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 262s Setting up python3-importlib-metadata (8.5.0-1) ... 262s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 262s Setting up python-pyfaidx-examples (0.8.1.3-1) ... 262s Setting up libxcb-render0:armhf (1.17.0-2) ... 262s Setting up x11-common (1:7.7+23ubuntu3) ... 263s Setting up libdeflate0:armhf (1.22-1) ... 263s Setting up python3-all (3.12.6-0ubuntu1) ... 263s Setting up libxcb-shm0:armhf (1.17.0-2) ... 263s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 263s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 263s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 263s Setting up libblas3:armhf (3.12.0-3build2) ... 263s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 263s Setting up python3-packaging (24.2-1) ... 263s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 263s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 263s Setting up libimagequant0:armhf (2.18.0-1build1) ... 263s Setting up fonts-dejavu-mono (2.37-8) ... 263s Setting up fonts-dejavu-core (2.37-8) ... 263s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 263s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 263s Setting up python3-pluggy (1.5.0-1) ... 263s Setting up libwebp7:armhf (1.4.0-0.1) ... 263s Setting up libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 263s Setting up libharfbuzz0b:armhf (10.0.1-1) ... 263s Setting up sgml-base (1.31) ... 263s Setting up libwebpmux3:armhf (1.4.0-0.1) ... 263s Setting up tabix (1.20+ds-1) ... 263s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 263s Setting up python3-pyfaidx (0.8.1.3-1) ... 263s Setting up liblapack3:armhf (3.12.0-3build2) ... 263s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 263s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 264s Setting up python3-pytest (8.3.3-1) ... 264s Setting up libwebpdemux2:armhf (1.4.0-0.1) ... 264s Setting up python3-freetype (2.5.1-1) ... 264s Setting up xfonts-utils (1:7.7+7) ... 264s Setting up libraqm0:armhf (0.10.1-1build1) ... 264s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 266s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 266s Setting up xml-core (0.19) ... 266s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 266s Setting up fonts-urw-base35 (20200910-8) ... 266s Setting up libcairo2:armhf (1.18.2-2) ... 266s Setting up python3-pil:armhf (10.4.0-1ubuntu1) ... 267s Setting up python3-cairo (1.26.1-2) ... 267s Setting up python3-rlpycairo (0.3.0-3) ... 267s Setting up python3-reportlab (4.2.5-1) ... 268s Processing triggers for libc-bin (2.40-1ubuntu3) ... 268s Processing triggers for man-db (2.13.0-1) ... 269s Processing triggers for sgml-base (1.31) ... 269s Setting up w3c-sgml-lib (1.3-3) ... 297s Setting up python3-biopython (1.84+dfsg-4) ... 299s Setting up autopkgtest-satdep (0) ... 316s (Reading database ... 63058 files and directories currently installed.) 316s Removing autopkgtest-satdep (0) ... 322s autopkgtest [02:00:58]: test run-unit-test: [----------------------- 324s Testing with python3.12 in /tmp/autopkgtest.XMR02S/build.dI1/src: 324s ============================= test session starts ============================== 324s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 324s cachedir: .pytest_cache 324s rootdir: /tmp/autopkgtest.XMR02S/build.dI1/src 324s configfile: pyproject.toml 324s plugins: typeguard-4.4.1 325s collecting ... collected 136 items 325s 325s tests/test_FastaRecord.py::test_sequence_uppercase PASSED [ 0%] 325s tests/test_FastaRecord.py::test_long_names PASSED [ 1%] 325s tests/test_FastaRecord.py::test_issue_62 PASSED [ 2%] 325s tests/test_FastaRecord.py::test_unpadded_length PASSED [ 2%] 325s tests/test_FastaRecord.py::test_numpy_array PASSED [ 3%] 325s tests/test_FastaRecord_iter.py::test_fetch_whole_fasta PASSED [ 4%] 325s tests/test_FastaRecord_iter.py::test_line_len PASSED [ 5%] 325s tests/test_FastaRecord_iter.py::test_reverse_iter PASSED [ 5%] 325s tests/test_FastaVariant.py::test_fetch_variant SKIPPED (pysam not in...) [ 6%] 325s tests/test_FastaVariant.py::test_fetch_hom_variant SKIPPED (pysam no...) [ 7%] 325s tests/test_FastaVariant.py::test_fetch_het_variant SKIPPED (pysam no...) [ 8%] 325s tests/test_FastaVariant.py::test_fetch_chr_not_in_vcf SKIPPED (pysam...) [ 8%] 325s tests/test_FastaVariant.py::test_all_pos SKIPPED (pysam not installed.) [ 9%] 325s tests/test_FastaVariant.py::test_all_diff SKIPPED (pysam not installed.) [ 10%] 325s tests/test_Fasta_bgzip.py::test_build_issue_126 XFAIL [ 11%] 325s tests/test_Fasta_bgzip.py::test_integer_slice PASSED [ 11%] 325s tests/test_Fasta_bgzip.py::test_integer_index PASSED [ 12%] 325s tests/test_Fasta_bgzip.py::test_fetch_whole_fasta PASSED [ 13%] 325s tests/test_Fasta_bgzip.py::test_line_len PASSED [ 13%] 325s tests/test_Fasta_bgzip.py::test_mutable_bgzf PASSED [ 14%] 325s tests/test_Fasta_bgzip.py::test_long_names XFAIL [ 15%] 325s tests/test_Fasta_bgzip.py::test_fetch_whole_entry PASSED [ 16%] 325s tests/test_Fasta_bgzip.py::test_fetch_middle PASSED [ 16%] 325s tests/test_Fasta_bgzip.py::test_fetch_end PASSED [ 17%] 325s tests/test_Fasta_bgzip.py::test_fetch_border PASSED [ 18%] 325s tests/test_Fasta_bgzip.py::test_rev PASSED [ 19%] 325s tests/test_Fasta_bgzip.py::test_fetch_past_bounds PASSED [ 19%] 325s tests/test_Fasta_bgzip.py::test_fetch_negative PASSED [ 20%] 325s tests/test_Fasta_bgzip.py::test_fetch_reversed_coordinates PASSED [ 21%] 325s tests/test_Fasta_bgzip.py::test_fetch_keyerror PASSED [ 22%] 325s tests/test_Fasta_bgzip.py::test_blank_string PASSED [ 22%] 325s tests/test_Fasta_bgzip.py::test_slice_from_beginning PASSED [ 23%] 325s tests/test_Fasta_bgzip.py::test_slice_from_end PASSED [ 24%] 325s tests/test_Fasta_bgzip.py::test_issue_74_start PASSED [ 25%] 325s tests/test_Fasta_bgzip.py::test_issue_74_consistency PASSED [ 25%] 325s tests/test_Fasta_bgzip.py::test_issue_74_end_faidx PASSED [ 26%] 325s tests/test_Fasta_bgzip.py::test_issue_74_end_fasta PASSED [ 27%] 325s tests/test_Fasta_bgzip.py::test_issue_79_fix PASSED [ 27%] 325s tests/test_Fasta_bgzip.py::test_issue_79_fix_negate PASSED [ 28%] 325s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false PASSED [ 29%] 325s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false_negate PASSED [ 30%] 325s tests/test_Fasta_bgzip.py::test_fetch_border_padded PASSED [ 30%] 325s tests/test_Fasta_integer_index.py::test_integer_slice PASSED [ 31%] 325s tests/test_Fasta_integer_index.py::test_integer_index PASSED [ 32%] 325s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads PASSED [ 33%] 326s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads_and_writes PASSED [ 33%] 326s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_writes PASSED [ 34%] 326s tests/test_Path.py::test_Faidx PASSED [ 35%] 326s tests/test_Path.py::test_Fasta PASSED [ 36%] 326s tests/test_bio_seqio.py::test_fetch_whole_entry PASSED [ 36%] 326s tests/test_bio_seqio.py::test_slice_whole_entry PASSED [ 37%] 326s tests/test_bio_seqio.py::test_revcomp_whole_entry PASSED [ 38%] 326s tests/test_faidx.py::test_short_line_lengths PASSED [ 38%] 326s tests/test_faidx.py::test_fetch_whole_file PASSED [ 39%] 326s tests/test_faidx.py::test_split_entry PASSED [ 40%] 326s tests/test_faidx.py::test_fetch_error PASSED [ 41%] 326s tests/test_faidx.py::test_key_warning PASSED [ 41%] 326s tests/test_faidx.py::test_auto_strand PASSED [ 42%] 326s tests/test_faidx.py::test_regexp PASSED [ 43%] 326s tests/test_faidx.py::test_not_regexp PASSED [ 44%] 326s tests/test_faidx.py::test_not_regexp_multi PASSED [ 44%] 326s tests/test_feature_bounds_check.py::test_index_zero_length PASSED [ 45%] 326s tests/test_feature_bounds_check.py::test_fetch_zero_length PASSED [ 46%] 326s tests/test_feature_bounds_check.py::test_as_raw_zero_length_subsequence PASSED [ 47%] 326s tests/test_feature_bounds_check.py::test_zero_length_subsequence PASSED [ 47%] 326s tests/test_feature_bounds_check.py::test_fetch_whole_entry PASSED [ 48%] 326s tests/test_feature_bounds_check.py::test_fetch_middle PASSED [ 49%] 326s tests/test_feature_bounds_check.py::test_fetch_end PASSED [ 50%] 326s tests/test_feature_bounds_check.py::test_fetch_border PASSED [ 50%] 326s tests/test_feature_bounds_check.py::test_rev PASSED [ 51%] 326s tests/test_feature_bounds_check.py::test_fetch_past_bounds PASSED [ 52%] 326s tests/test_feature_bounds_check.py::test_fetch_negative PASSED [ 52%] 326s tests/test_feature_bounds_check.py::test_fetch_reversed_coordinates PASSED [ 53%] 326s tests/test_feature_bounds_check.py::test_fetch_keyerror PASSED [ 54%] 326s tests/test_feature_bounds_check.py::test_blank_string PASSED [ 55%] 326s tests/test_feature_bounds_check.py::test_slice_from_beginning PASSED [ 55%] 326s tests/test_feature_bounds_check.py::test_slice_from_end PASSED [ 56%] 326s tests/test_feature_bounds_check.py::test_issue_74_start PASSED [ 57%] 326s tests/test_feature_bounds_check.py::test_issue_74_consistency PASSED [ 58%] 326s tests/test_feature_bounds_check.py::test_issue_74_end_faidx PASSED [ 58%] 326s tests/test_feature_bounds_check.py::test_issue_74_end_fasta PASSED [ 59%] 326s tests/test_feature_bounds_check.py::test_issue_79_fix PASSED [ 60%] 326s tests/test_feature_bounds_check.py::test_issue_79_fix_negate PASSED [ 61%] 326s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false PASSED [ 61%] 326s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false_negate PASSED [ 62%] 326s tests/test_feature_default_seq.py::test_fetch_border_padded PASSED [ 63%] 326s tests/test_feature_indexing.py::test_version_issue_206 PASSED [ 63%] 326s tests/test_feature_indexing.py::test_build PASSED [ 64%] 326s tests/test_feature_indexing.py::test_build_issue_141 PASSED [ 65%] 326s tests/test_feature_indexing.py::test_build_issue_111 PASSED [ 66%] 326s tests/test_feature_indexing.py::test_order PASSED [ 66%] 332s tests/test_feature_indexing.py::test_valgrind_short_lines PASSED [ 67%] 338s tests/test_feature_indexing.py::test_valgrind_long_lines PASSED [ 68%] 344s tests/test_feature_indexing.py::test_valgrind_blank_lines PASSED [ 69%] 346s tests/test_feature_indexing.py::test_reindex_on_modification PASSED [ 69%] 346s tests/test_feature_indexing.py::test_build_issue_83 PASSED [ 70%] 346s tests/test_feature_indexing.py::test_build_issue_96_fail_build_faidx PASSED [ 71%] 346s tests/test_feature_indexing.py::test_build_issue_96_fail_read_malformed_index_duplicate_key PASSED [ 72%] 346s tests/test_feature_indexing.py::test_read_back_index PASSED [ 72%] 346s tests/test_feature_indexing.py::test_issue_134_no_build_index PASSED [ 73%] 346s tests/test_feature_indexing.py::test_issue_144_no_defline PASSED [ 74%] 346s tests/test_feature_key_function.py::test_keys PASSED [ 75%] 346s tests/test_feature_key_function.py::test_key_function_by_dictionary_get_key PASSED [ 75%] 346s tests/test_feature_key_function.py::test_key_function_by_fetch PASSED [ 76%] 346s tests/test_feature_key_function.py::test_duplicated_keys PASSED [ 77%] 346s tests/test_feature_key_function.py::test_duplicated_keys_shortest PASSED [ 77%] 346s tests/test_feature_key_function.py::test_duplicated_keys_longest PASSED [ 78%] 346s tests/test_feature_read_ahead_buffer.py::test_buffer_false PASSED [ 79%] 346s tests/test_feature_read_ahead_buffer.py::test_buffer_true PASSED [ 80%] 346s tests/test_feature_read_ahead_buffer.py::test_buffer_exceed PASSED [ 80%] 346s tests/test_feature_read_ahead_buffer.py::test_bounds_error PASSED [ 81%] 346s tests/test_feature_read_ahead_buffer.py::test_buffer_value PASSED [ 82%] 346s tests/test_feature_sequence_as_raw.py::test_as_raw_false PASSED [ 83%] 346s tests/test_feature_sequence_as_raw.py::test_as_raw_true PASSED [ 83%] 346s tests/test_feature_sequence_as_raw.py::test_as_raw_false_error PASSED [ 84%] 346s tests/test_feature_sequence_as_raw.py::test_as_raw_true_error PASSED [ 85%] 346s tests/test_feature_sequence_as_raw.py::test_as_raw_type_when_blen_lt_0 PASSED [ 86%] 346s tests/test_feature_spliced_seq.py::test_split_seq PASSED [ 86%] 346s tests/test_feature_spliced_seq.py::test_get_seq_rc PASSED [ 87%] 346s tests/test_feature_split_char.py::test_keys PASSED [ 88%] 346s tests/test_feature_split_char.py::test_key_function_by_dictionary_get_key PASSED [ 88%] 346s tests/test_feature_split_char.py::test_key_function_by_fetch PASSED [ 89%] 346s tests/test_feature_split_char.py::test_stop PASSED [ 90%] 346s tests/test_fsspec.py::test_fsspec_fetch_whole_file SKIPPED (uncondit...) [ 91%] 346s tests/test_fsspec.py::test_fsspec_default_index SKIPPED (uncondition...) [ 91%] 346s tests/test_fsspec.py::test_fsspec_local_index SKIPPED (unconditional...) [ 92%] 346s tests/test_fsspec.py::test_fsspec_remote_index SKIPPED (unconditiona...) [ 93%] 346s tests/test_sequence_class.py::test_negate PASSED [ 94%] 346s tests/test_sequence_class.py::test_negate_metadata PASSED [ 94%] 346s tests/test_sequence_class.py::test_seq_invalid PASSED [ 95%] 346s tests/test_sequence_class.py::test_integer_index PASSED [ 96%] 346s tests/test_sequence_class.py::test_slice_index PASSED [ 97%] 346s tests/test_sequence_class.py::test_comp_invalid PASSED [ 97%] 346s tests/test_sequence_class.py::test_check_coordinates PASSED [ 98%] 346s tests/test_sequence_class.py::test_comp_valid PASSED [ 99%] 346s tests/test_sequence_class.py::test_comp_empty PASSED [100%] 346s 346s ================= 124 passed, 10 skipped, 2 xfailed in 21.56s ================== 346s autopkgtest [02:01:22]: test run-unit-test: -----------------------] 351s autopkgtest [02:01:27]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 351s run-unit-test PASS 355s autopkgtest [02:01:31]: test autodep8-python3: preparing testbed 411s autopkgtest [02:02:27]: testbed dpkg architecture: armhf 412s autopkgtest [02:02:28]: testbed apt version: 2.9.8 412s autopkgtest [02:02:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 420s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 420s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [982 kB] 421s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [88.9 kB] 421s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 421s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.1 kB] 421s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [137 kB] 421s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [723 kB] 421s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4736 B] 421s Fetched 2032 kB in 1s (1751 kB/s) 421s Reading package lists... 436s tee: /proc/self/fd/2: Permission denied 459s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 459s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 459s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 459s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 460s Reading package lists... 460s Reading package lists... 461s Building dependency tree... 461s Reading state information... 462s Calculating upgrade... 463s The following NEW packages will be installed: 463s python3.13-gdbm 463s The following packages will be upgraded: 463s debianutils dmidecode libftdi1-2 libnvme1t64 python3-gdbm 464s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 464s Need to get 290 kB of archives. 464s After this operation, 92.2 kB of additional disk space will be used. 464s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf debianutils armhf 5.21 [91.8 kB] 464s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf dmidecode armhf 3.6-2 [60.8 kB] 464s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 464s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 464s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7build1 [25.8 kB] 464s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-2 [73.8 kB] 464s Fetched 290 kB in 0s (700 kB/s) 464s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59573 files and directories currently installed.) 464s Preparing to unpack .../debianutils_5.21_armhf.deb ... 464s Unpacking debianutils (5.21) over (5.20) ... 465s Setting up debianutils (5.21) ... 465s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59573 files and directories currently installed.) 465s Preparing to unpack .../dmidecode_3.6-2_armhf.deb ... 465s Unpacking dmidecode (3.6-2) over (3.6-1) ... 465s Selecting previously unselected package python3.13-gdbm. 465s Preparing to unpack .../python3.13-gdbm_3.13.0-2_armhf.deb ... 465s Unpacking python3.13-gdbm (3.13.0-2) ... 465s Preparing to unpack .../python3-gdbm_3.12.7-1_armhf.deb ... 465s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 465s Preparing to unpack .../libftdi1-2_1.5-7build1_armhf.deb ... 465s Unpacking libftdi1-2:armhf (1.5-7build1) over (1.5-7) ... 465s Preparing to unpack .../libnvme1t64_1.11-2_armhf.deb ... 465s Unpacking libnvme1t64 (1.11-2) over (1.11-1) ... 465s Setting up libftdi1-2:armhf (1.5-7build1) ... 465s Setting up libnvme1t64 (1.11-2) ... 465s Setting up dmidecode (3.6-2) ... 465s Setting up python3.13-gdbm (3.13.0-2) ... 465s Setting up python3-gdbm:armhf (3.12.7-1) ... 465s Processing triggers for man-db (2.13.0-1) ... 466s Processing triggers for libc-bin (2.40-1ubuntu3) ... 466s Reading package lists... 467s Building dependency tree... 467s Reading state information... 467s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 469s autopkgtest [02:03:25]: rebooting testbed after setup commands that affected boot 572s Reading package lists... 572s Building dependency tree... 572s Reading state information... 573s Starting pkgProblemResolver with broken count: 0 573s Starting 2 pkgProblemResolver with broken count: 0 573s Done 574s The following additional packages will be installed: 574s python3-all python3-importlib-metadata python3-packaging python3-pyfaidx 574s Recommended packages: 574s python3-biopython 574s The following NEW packages will be installed: 574s autopkgtest-satdep python3-all python3-importlib-metadata python3-packaging 574s python3-pyfaidx 574s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 574s Need to get 103 kB/103 kB of archives. 574s After this operation, 473 kB of additional disk space will be used. 574s Get:1 /tmp/autopkgtest.XMR02S/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B] 574s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.12.6-0ubuntu1 [886 B] 574s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3-importlib-metadata all 8.5.0-1 [20.7 kB] 574s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-packaging all 24.2-1 [51.5 kB] 574s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 575s Fetched 103 kB in 1s (203 kB/s) 575s Selecting previously unselected package python3-all. 575s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59579 files and directories currently installed.) 575s Preparing to unpack .../python3-all_3.12.6-0ubuntu1_armhf.deb ... 575s Unpacking python3-all (3.12.6-0ubuntu1) ... 575s Selecting previously unselected package python3-importlib-metadata. 575s Preparing to unpack .../python3-importlib-metadata_8.5.0-1_all.deb ... 575s Unpacking python3-importlib-metadata (8.5.0-1) ... 575s Selecting previously unselected package python3-packaging. 575s Preparing to unpack .../python3-packaging_24.2-1_all.deb ... 575s Unpacking python3-packaging (24.2-1) ... 575s Selecting previously unselected package python3-pyfaidx. 575s Preparing to unpack .../python3-pyfaidx_0.8.1.3-1_all.deb ... 575s Unpacking python3-pyfaidx (0.8.1.3-1) ... 575s Selecting previously unselected package autopkgtest-satdep. 575s Preparing to unpack .../2-autopkgtest-satdep.deb ... 575s Unpacking autopkgtest-satdep (0) ... 575s Setting up python3-importlib-metadata (8.5.0-1) ... 575s Setting up python3-all (3.12.6-0ubuntu1) ... 575s Setting up python3-packaging (24.2-1) ... 575s Setting up python3-pyfaidx (0.8.1.3-1) ... 575s Setting up autopkgtest-satdep (0) ... 575s Processing triggers for man-db (2.13.0-1) ... 587s (Reading database ... 59643 files and directories currently installed.) 587s Removing autopkgtest-satdep (0) ... 598s autopkgtest [02:05:34]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyfaidx; print(pyfaidx)" ; done 598s autopkgtest [02:05:34]: test autodep8-python3: [----------------------- 600s Testing with python3.12: 600s 601s autopkgtest [02:05:37]: test autodep8-python3: -----------------------] 604s autopkgtest [02:05:40]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 604s autodep8-python3 PASS (superficial) 608s autopkgtest [02:05:44]: @@@@@@@@@@@@@@@@@@@@ summary 608s run-unit-test PASS 608s autodep8-python3 PASS (superficial)