0s autopkgtest [00:42:00]: starting date and time: 2024-11-04 00:42:00+0000 0s autopkgtest [00:42:00]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [00:42:00]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._ndy65q_/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:htslib --apt-upgrade python-pyfaidx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=htslib/1.20+ds-2 -- lxd -r lxd-armhf-10.145.243.9 lxd-armhf-10.145.243.9:autopkgtest/ubuntu/plucky/armhf 53s autopkgtest [00:42:53]: testbed dpkg architecture: armhf 55s autopkgtest [00:42:55]: testbed apt version: 2.9.8 55s autopkgtest [00:42:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 63s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [31.2 kB] 63s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 63s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2268 kB] 63s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [209 kB] 63s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [1640 kB] 63s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [23.9 kB] 63s Fetched 4430 kB in 1s (3412 kB/s) 64s Reading package lists... 81s tee: /proc/self/fd/2: Permission denied 102s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 103s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 103s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 104s Reading package lists... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Calculating upgrade... 105s The following packages were automatically installed and are no longer required: 105s libperl5.38t64 perl-modules-5.38 105s Use 'apt autoremove' to remove them. 105s The following NEW packages will be installed: 105s libperl5.40 perl-modules-5.40 105s The following packages will be upgraded: 105s base-files distro-info-data fwupd gcc-14-base info install-info iproute2 105s libatomic1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 105s libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 105s libblockdev-utils3 libblockdev3 libdb5.3t64 libdw1t64 libelf1t64 libevdev2 105s libftdi1-2 libfwupd2 libgcc-s1 libinih1 libkeyutils1 liblocale-gettext-perl 105s libpipeline1 libsgutils2-1.46-2 libstdc++6 libtext-charwidth-perl 105s libtext-iconv-perl motd-news-config nano perl perl-base python3-configobj 106s python3-json-pointer python3-lazr.uri python3-zipp sg3-utils sg3-utils-udev 106s vim-common vim-tiny xxd 106s 45 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 19.6 MB of archives. 106s After this operation, 42.8 MB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu2 [5274 B] 106s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu2 [68.6 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-6 [3214 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-6 [4140 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-6 [262 kB] 106s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-6 [1674 kB] 106s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 106s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 106s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 106s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 106s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-7ubuntu1 [7842 B] 106s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-7ubuntu1 [51.2 kB] 106s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-7ubuntu1 [711 kB] 106s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-7ubuntu1 [40.8 kB] 106s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 106s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 106s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 107s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 107s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 107s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 107s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 107s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 107s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 107s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 107s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 107s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 107s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 107s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 107s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 107s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.0-2 [17.4 kB] 107s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.0-2 [22.3 kB] 107s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.0-2 [34.3 kB] 107s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.0-2 [6552 B] 107s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.0-2 [13.4 kB] 107s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.0-2 [17.6 kB] 107s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.0-2 [16.5 kB] 107s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.0-2 [8942 B] 107s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.0-2 [44.2 kB] 107s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 107s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 107s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 107s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 107s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 107s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 107s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.20.2-1 [10.1 kB] 107s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 107s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 107s Preconfiguring packages ... 107s Fetched 19.6 MB in 1s (13.4 MB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 108s Preparing to unpack .../motd-news-config_13.5ubuntu2_all.deb ... 108s Unpacking motd-news-config (13.5ubuntu2) over (13.3ubuntu6) ... 108s Preparing to unpack .../base-files_13.5ubuntu2_armhf.deb ... 108s Unpacking base-files (13.5ubuntu2) over (13.3ubuntu6) ... 108s Setting up base-files (13.5ubuntu2) ... 108s Installing new version of config file /etc/issue ... 108s Installing new version of config file /etc/issue.net ... 108s Installing new version of config file /etc/lsb-release ... 109s motd-news.service is a disabled or a static unit not running, not starting it. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 109s Preparing to unpack .../perl_5.40.0-6_armhf.deb ... 109s Unpacking perl (5.40.0-6) over (5.38.2-5) ... 109s Selecting previously unselected package perl-modules-5.40. 109s Preparing to unpack .../perl-modules-5.40_5.40.0-6_all.deb ... 109s Unpacking perl-modules-5.40 (5.40.0-6) ... 109s Selecting previously unselected package libperl5.40:armhf. 109s Preparing to unpack .../libperl5.40_5.40.0-6_armhf.deb ... 109s Unpacking libperl5.40:armhf (5.40.0-6) ... 109s Preparing to unpack .../perl-base_5.40.0-6_armhf.deb ... 109s Unpacking perl-base (5.40.0-6) over (5.38.2-5) ... 110s Setting up perl-base (5.40.0-6) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 110s Preparing to unpack .../liblocale-gettext-perl_1.07-7build1_armhf.deb ... 110s Unpacking liblocale-gettext-perl (1.07-7build1) over (1.07-7) ... 110s Preparing to unpack .../libtext-iconv-perl_1.7-8build4_armhf.deb ... 110s Unpacking libtext-iconv-perl:armhf (1.7-8build4) over (1.7-8build3) ... 110s Preparing to unpack .../libtext-charwidth-perl_0.04-11build4_armhf.deb ... 110s Unpacking libtext-charwidth-perl:armhf (0.04-11build4) over (0.04-11build3) ... 110s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_armhf.deb ... 110s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-9) over (5.3.28+dfsg2-7) ... 110s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-9) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 110s Preparing to unpack .../libatomic1_14.2.0-7ubuntu1_armhf.deb ... 110s Unpacking libatomic1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 110s Preparing to unpack .../gcc-14-base_14.2.0-7ubuntu1_armhf.deb ... 110s Unpacking gcc-14-base:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 110s Setting up gcc-14-base:armhf (14.2.0-7ubuntu1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 110s Preparing to unpack .../libstdc++6_14.2.0-7ubuntu1_armhf.deb ... 110s Unpacking libstdc++6:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 110s Setting up libstdc++6:armhf (14.2.0-7ubuntu1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 110s Preparing to unpack .../libgcc-s1_14.2.0-7ubuntu1_armhf.deb ... 110s Unpacking libgcc-s1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 110s Setting up libgcc-s1:armhf (14.2.0-7ubuntu1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 110s Preparing to unpack .../install-info_7.1.1-1_armhf.deb ... 110s Unpacking install-info (7.1.1-1) over (7.1-3build2) ... 111s Setting up install-info (7.1.1-1) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 111s Preparing to unpack .../00-distro-info-data_0.63_all.deb ... 111s Unpacking distro-info-data (0.63) over (0.62) ... 111s Preparing to unpack .../01-libdw1t64_0.192-4_armhf.deb ... 111s Unpacking libdw1t64:armhf (0.192-4) over (0.191-2) ... 111s Preparing to unpack .../02-libelf1t64_0.192-4_armhf.deb ... 111s Unpacking libelf1t64:armhf (0.192-4) over (0.191-2) ... 111s Preparing to unpack .../03-iproute2_6.10.0-2ubuntu1_armhf.deb ... 111s Unpacking iproute2 (6.10.0-2ubuntu1) over (6.10.0-2) ... 111s Preparing to unpack .../04-libkeyutils1_1.6.3-4ubuntu2_armhf.deb ... 111s Unpacking libkeyutils1:armhf (1.6.3-4ubuntu2) over (1.6.3-3build1) ... 111s Preparing to unpack .../05-vim-tiny_2%3a9.1.0777-1ubuntu1_armhf.deb ... 111s Unpacking vim-tiny (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 111s Preparing to unpack .../06-vim-common_2%3a9.1.0777-1ubuntu1_all.deb ... 111s Unpacking vim-common (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 111s Preparing to unpack .../07-xxd_2%3a9.1.0777-1ubuntu1_armhf.deb ... 111s Unpacking xxd (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 111s Preparing to unpack .../08-info_7.1.1-1_armhf.deb ... 111s Unpacking info (7.1.1-1) over (7.1-3build2) ... 111s Preparing to unpack .../09-libevdev2_1.13.3+dfsg-1_armhf.deb ... 111s Unpacking libevdev2:armhf (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ... 112s Preparing to unpack .../10-libpipeline1_1.5.8-1_armhf.deb ... 112s Unpacking libpipeline1:armhf (1.5.8-1) over (1.5.7-2) ... 112s Preparing to unpack .../11-nano_8.2-1_armhf.deb ... 112s Unpacking nano (8.2-1) over (8.1-1) ... 112s Preparing to unpack .../12-libfwupd2_1.9.26-2_armhf.deb ... 112s Unpacking libfwupd2:armhf (1.9.26-2) over (1.9.24-1) ... 112s Preparing to unpack .../13-fwupd_1.9.26-2_armhf.deb ... 112s Unpacking fwupd (1.9.26-2) over (1.9.24-1) ... 112s Preparing to unpack .../14-libblockdev-utils3_3.2.0-2_armhf.deb ... 112s Unpacking libblockdev-utils3:armhf (3.2.0-2) over (3.1.1-2) ... 112s Preparing to unpack .../15-libblockdev-crypto3_3.2.0-2_armhf.deb ... 112s Unpacking libblockdev-crypto3:armhf (3.2.0-2) over (3.1.1-2) ... 112s Preparing to unpack .../16-libblockdev-fs3_3.2.0-2_armhf.deb ... 112s Unpacking libblockdev-fs3:armhf (3.2.0-2) over (3.1.1-2) ... 112s Preparing to unpack .../17-libblockdev-loop3_3.2.0-2_armhf.deb ... 112s Unpacking libblockdev-loop3:armhf (3.2.0-2) over (3.1.1-2) ... 112s Preparing to unpack .../18-libblockdev-mdraid3_3.2.0-2_armhf.deb ... 112s Unpacking libblockdev-mdraid3:armhf (3.2.0-2) over (3.1.1-2) ... 112s Preparing to unpack .../19-libblockdev-nvme3_3.2.0-2_armhf.deb ... 112s Unpacking libblockdev-nvme3:armhf (3.2.0-2) over (3.1.1-2) ... 112s Preparing to unpack .../20-libblockdev-part3_3.2.0-2_armhf.deb ... 112s Unpacking libblockdev-part3:armhf (3.2.0-2) over (3.1.1-2) ... 112s Preparing to unpack .../21-libblockdev-swap3_3.2.0-2_armhf.deb ... 112s Unpacking libblockdev-swap3:armhf (3.2.0-2) over (3.1.1-2) ... 112s Preparing to unpack .../22-libblockdev3_3.2.0-2_armhf.deb ... 112s Unpacking libblockdev3:armhf (3.2.0-2) over (3.1.1-2) ... 112s Preparing to unpack .../23-libftdi1-2_1.5-7_armhf.deb ... 112s Unpacking libftdi1-2:armhf (1.5-7) over (1.5-6build5) ... 112s Preparing to unpack .../24-libinih1_58-1ubuntu1_armhf.deb ... 112s Unpacking libinih1:armhf (58-1ubuntu1) over (55-1ubuntu2) ... 112s Preparing to unpack .../25-libsgutils2-1.46-2_1.46-3ubuntu5_armhf.deb ... 112s Unpacking libsgutils2-1.46-2:armhf (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 112s Preparing to unpack .../26-python3-configobj_5.0.9-1_all.deb ... 113s Unpacking python3-configobj (5.0.9-1) over (5.0.8-3) ... 113s Preparing to unpack .../27-python3-json-pointer_2.4-2_all.deb ... 113s Unpacking python3-json-pointer (2.4-2) over (2.0-0ubuntu1) ... 113s Preparing to unpack .../28-python3-lazr.uri_1.0.6-4_all.deb ... 113s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ... 113s Preparing to unpack .../29-python3-zipp_3.20.2-1_all.deb ... 113s Unpacking python3-zipp (3.20.2-1) over (3.20.0-1) ... 113s Preparing to unpack .../30-sg3-utils_1.46-3ubuntu5_armhf.deb ... 113s Unpacking sg3-utils (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 113s Preparing to unpack .../31-sg3-utils-udev_1.46-3ubuntu5_all.deb ... 113s Unpacking sg3-utils-udev (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 113s Setting up libpipeline1:armhf (1.5.8-1) ... 113s Setting up motd-news-config (13.5ubuntu2) ... 113s Setting up libtext-iconv-perl:armhf (1.7-8build4) ... 113s Setting up libtext-charwidth-perl:armhf (0.04-11build4) ... 113s Setting up libkeyutils1:armhf (1.6.3-4ubuntu2) ... 113s Setting up distro-info-data (0.63) ... 113s Setting up libinih1:armhf (58-1ubuntu1) ... 113s Setting up libfwupd2:armhf (1.9.26-2) ... 113s Setting up libsgutils2-1.46-2:armhf (1.46-3ubuntu5) ... 113s Setting up python3-lazr.uri (1.0.6-4) ... 113s Setting up python3-zipp (3.20.2-1) ... 113s Setting up xxd (2:9.1.0777-1ubuntu1) ... 113s Setting up libelf1t64:armhf (0.192-4) ... 113s Setting up libdw1t64:armhf (0.192-4) ... 113s Setting up libftdi1-2:armhf (1.5-7) ... 113s Setting up python3-configobj (5.0.9-1) ... 113s Setting up vim-common (2:9.1.0777-1ubuntu1) ... 113s Installing new version of config file /etc/vim/vimrc ... 113s Setting up libblockdev-utils3:armhf (3.2.0-2) ... 113s Setting up libatomic1:armhf (14.2.0-7ubuntu1) ... 113s Setting up libblockdev-nvme3:armhf (3.2.0-2) ... 113s Setting up nano (8.2-1) ... 113s Setting up libblockdev-fs3:armhf (3.2.0-2) ... 113s Setting up perl-modules-5.40 (5.40.0-6) ... 113s Setting up python3-json-pointer (2.4-2) ... 114s Setting up libevdev2:armhf (1.13.3+dfsg-1) ... 114s Setting up fwupd (1.9.26-2) ... 114s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 114s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 114s fwupd.service is a disabled or a static unit not running, not starting it. 114s Setting up info (7.1.1-1) ... 114s Setting up liblocale-gettext-perl (1.07-7build1) ... 114s Setting up sg3-utils (1.46-3ubuntu5) ... 114s Setting up libblockdev-mdraid3:armhf (3.2.0-2) ... 114s Setting up libblockdev-crypto3:armhf (3.2.0-2) ... 114s Setting up libblockdev-swap3:armhf (3.2.0-2) ... 114s Setting up iproute2 (6.10.0-2ubuntu1) ... 114s Setting up libblockdev-loop3:armhf (3.2.0-2) ... 114s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 114s Setting up libblockdev3:armhf (3.2.0-2) ... 114s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 114s Setting up libblockdev-part3:armhf (3.2.0-2) ... 114s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 115s update-initramfs: deferring update (trigger activated) 115s Setting up libperl5.40:armhf (5.40.0-6) ... 115s Setting up perl (5.40.0-6) ... 115s Processing triggers for dbus (1.14.10-4ubuntu5) ... 115s Processing triggers for install-info (7.1.1-1) ... 115s Processing triggers for initramfs-tools (0.142ubuntu34) ... 115s Processing triggers for libc-bin (2.40-1ubuntu3) ... 115s Processing triggers for man-db (2.12.1-3) ... 116s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-1ubuntu10) ... 116s update-initramfs: deferring update (trigger activated) 116s Processing triggers for initramfs-tools (0.142ubuntu34) ... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s The following packages will be REMOVED: 118s libperl5.38t64* perl-modules-5.38* 118s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 118s After this operation, 41.6 MB disk space will be freed. 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 118s Removing libperl5.38t64:armhf (5.38.2-5) ... 118s Removing perl-modules-5.38 (5.38.2-5) ... 118s Processing triggers for man-db (2.12.1-3) ... 118s Processing triggers for libc-bin (2.40-1ubuntu3) ... 121s autopkgtest [00:44:01]: rebooting testbed after setup commands that affected boot 190s autopkgtest [00:45:10]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 216s autopkgtest [00:45:36]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyfaidx 229s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.2-1 (dsc) [2578 B] 229s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.2-1 (tar) [96.5 kB] 229s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pyfaidx 0.8.1.2-1 (diff) [7004 B] 230s gpgv: Signature made Sun Aug 11 17:37:37 2024 UTC 230s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 230s gpgv: issuer "emollier@debian.org" 230s gpgv: Can't check signature: No public key 230s dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.2-1.dsc: no acceptable signature found 230s autopkgtest [00:45:50]: testing package python-pyfaidx version 0.8.1.2-1 232s autopkgtest [00:45:52]: build not needed 234s autopkgtest [00:45:54]: test run-unit-test: preparing testbed 243s Reading package lists... 244s Building dependency tree... 244s Reading state information... 244s Starting pkgProblemResolver with broken count: 0 244s Starting 2 pkgProblemResolver with broken count: 0 244s Done 245s The following additional packages will be installed: 245s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 245s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libfreetype6 245s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhtscodecs2 245s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 245s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 245s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 245s python-pyfaidx-examples python3-all python3-biopython python3-cairo 245s python3-freetype python3-importlib-metadata python3-iniconfig python3-numpy 245s python3-packaging python3-pil python3-pluggy python3-pyfaidx python3-pytest 245s python3-reportlab python3-rlpycairo sgml-base tabix w3c-sgml-lib x11-common 245s xfonts-encodings xfonts-utils xml-core 245s Suggested packages: 245s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 245s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 245s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 245s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 245s gcc gfortran python-numpy-doc python3-dev python-pil-doc pdf-viewer 245s python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm 245s sgml-base-doc debhelper 245s Recommended packages: 245s python-biopython-doc ncbi-blast+ python3-olefile fonts-dejavu-extra 245s The following NEW packages will be installed: 245s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono 245s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 245s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 245s libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 245s liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 245s libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 245s libxrender1 python-pyfaidx-examples python3-all python3-biopython 245s python3-cairo python3-freetype python3-importlib-metadata python3-iniconfig 245s python3-numpy python3-packaging python3-pil python3-pluggy python3-pyfaidx 245s python3-pytest python3-reportlab python3-rlpycairo sgml-base tabix 245s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 245s 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. 245s Need to get 26.7 MB/26.7 MB of archives. 245s After this operation, 75.1 MB of additional disk space will be used. 245s Get:1 /tmp/autopkgtest.TJISpr/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [752 B] 245s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB] 245s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 246s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 246s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 246s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 246s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 246s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 246s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 246s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 246s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 246s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 246s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 246s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.42.2-1build1 [193 kB] 246s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 246s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 246s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 246s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 246s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.21-1 [38.8 kB] 246s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-7ubuntu1 [311 kB] 246s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-7ubuntu1 [125 kB] 246s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 246s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 9.0.0-1 [462 kB] 246s Get:24 http://ftpmaster.internal/ubuntu plucky/universe armhf libhtscodecs2 armhf 1.6.0-1build1 [65.8 kB] 246s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 246s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 246s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 246s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 246s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.14-2build1 [132 kB] 246s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 246s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB] 246s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 246s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 246s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 246s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 246s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 246s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 246s Get:38 http://ftpmaster.internal/ubuntu plucky/universe armhf python-pyfaidx-examples all 0.8.1.2-1 [38.0 kB] 247s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.12.6-0ubuntu1 [886 B] 247s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 247s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 247s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu1 [428 kB] 247s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cairo armhf 1.26.1-2 [114 kB] 247s Get:44 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-freetype all 2.4.0-2 [81.3 kB] 247s Get:45 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 247s Get:46 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-reportlab all 4.2.2-1 [1130 kB] 247s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB] 247s Get:48 http://ftpmaster.internal/ubuntu plucky/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 247s Get:49 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-biopython armhf 1.83+dfsg1-3 [1627 kB] 247s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf python3-importlib-metadata all 8.2.0-2 [20.3 kB] 247s Get:51 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 247s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 247s Get:53 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 247s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyfaidx all 0.8.1.2-1 [29.6 kB] 247s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.2-1 [251 kB] 247s Get:56 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf tabix armhf 1.20+ds-2 [429 kB] 247s Fetched 26.7 MB in 2s (14.5 MB/s) 247s Selecting previously unselected package sgml-base. 247s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59532 files and directories currently installed.) 247s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 247s Unpacking sgml-base (1.31) ... 247s Selecting previously unselected package fonts-dejavu-mono. 247s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 247s Unpacking fonts-dejavu-mono (2.37-8) ... 247s Selecting previously unselected package fonts-dejavu-core. 248s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 248s Unpacking fonts-dejavu-core (2.37-8) ... 248s Selecting previously unselected package libfontenc1:armhf. 248s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 248s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 248s Selecting previously unselected package libfreetype6:armhf. 248s Preparing to unpack .../04-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 248s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 248s Selecting previously unselected package x11-common. 248s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu3_all.deb ... 248s Unpacking x11-common (1:7.7+23ubuntu3) ... 248s Selecting previously unselected package xfonts-encodings. 248s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 248s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 248s Selecting previously unselected package xfonts-utils. 248s Preparing to unpack .../07-xfonts-utils_1%3a7.7+7_armhf.deb ... 248s Unpacking xfonts-utils (1:7.7+7) ... 248s Selecting previously unselected package fonts-urw-base35. 248s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ... 248s Unpacking fonts-urw-base35 (20200910-8) ... 248s Selecting previously unselected package fontconfig-config. 248s Preparing to unpack .../09-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 248s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 249s Selecting previously unselected package libblas3:armhf. 249s Preparing to unpack .../10-libblas3_3.12.0-3build2_armhf.deb ... 249s Unpacking libblas3:armhf (3.12.0-3build2) ... 249s Selecting previously unselected package libfontconfig1:armhf. 249s Preparing to unpack .../11-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 249s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 249s Selecting previously unselected package libpixman-1-0:armhf. 249s Preparing to unpack .../12-libpixman-1-0_0.42.2-1build1_armhf.deb ... 249s Unpacking libpixman-1-0:armhf (0.42.2-1build1) ... 249s Selecting previously unselected package libxcb-render0:armhf. 249s Preparing to unpack .../13-libxcb-render0_1.17.0-2_armhf.deb ... 249s Unpacking libxcb-render0:armhf (1.17.0-2) ... 249s Selecting previously unselected package libxcb-shm0:armhf. 249s Preparing to unpack .../14-libxcb-shm0_1.17.0-2_armhf.deb ... 249s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 249s Selecting previously unselected package libxrender1:armhf. 249s Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 249s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 249s Selecting previously unselected package libcairo2:armhf. 249s Preparing to unpack .../16-libcairo2_1.18.2-2_armhf.deb ... 249s Unpacking libcairo2:armhf (1.18.2-2) ... 249s Selecting previously unselected package libdeflate0:armhf. 249s Preparing to unpack .../17-libdeflate0_1.21-1_armhf.deb ... 249s Unpacking libdeflate0:armhf (1.21-1) ... 249s Selecting previously unselected package libgfortran5:armhf. 249s Preparing to unpack .../18-libgfortran5_14.2.0-7ubuntu1_armhf.deb ... 249s Unpacking libgfortran5:armhf (14.2.0-7ubuntu1) ... 249s Selecting previously unselected package libgomp1:armhf. 249s Preparing to unpack .../19-libgomp1_14.2.0-7ubuntu1_armhf.deb ... 249s Unpacking libgomp1:armhf (14.2.0-7ubuntu1) ... 249s Selecting previously unselected package libgraphite2-3:armhf. 249s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 249s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 249s Selecting previously unselected package libharfbuzz0b:armhf. 249s Preparing to unpack .../21-libharfbuzz0b_9.0.0-1_armhf.deb ... 249s Unpacking libharfbuzz0b:armhf (9.0.0-1) ... 249s Selecting previously unselected package libhtscodecs2:armhf. 249s Preparing to unpack .../22-libhtscodecs2_1.6.0-1build1_armhf.deb ... 249s Unpacking libhtscodecs2:armhf (1.6.0-1build1) ... 249s Selecting previously unselected package libimagequant0:armhf. 249s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_armhf.deb ... 249s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 249s Selecting previously unselected package libjpeg-turbo8:armhf. 249s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 249s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 249s Selecting previously unselected package libjpeg8:armhf. 249s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_armhf.deb ... 249s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 249s Selecting previously unselected package liblapack3:armhf. 249s Preparing to unpack .../26-liblapack3_3.12.0-3build2_armhf.deb ... 249s Unpacking liblapack3:armhf (3.12.0-3build2) ... 249s Selecting previously unselected package liblcms2-2:armhf. 249s Preparing to unpack .../27-liblcms2-2_2.14-2build1_armhf.deb ... 249s Unpacking liblcms2-2:armhf (2.14-2build1) ... 249s Selecting previously unselected package liblerc4:armhf. 249s Preparing to unpack .../28-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 249s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 249s Selecting previously unselected package libraqm0:armhf. 249s Preparing to unpack .../29-libraqm0_0.10.1-1build1_armhf.deb ... 249s Unpacking libraqm0:armhf (0.10.1-1build1) ... 249s Selecting previously unselected package libsharpyuv0:armhf. 249s Preparing to unpack .../30-libsharpyuv0_1.4.0-0.1_armhf.deb ... 249s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 249s Selecting previously unselected package libjbig0:armhf. 250s Preparing to unpack .../31-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 250s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 250s Selecting previously unselected package libwebp7:armhf. 250s Preparing to unpack .../32-libwebp7_1.4.0-0.1_armhf.deb ... 250s Unpacking libwebp7:armhf (1.4.0-0.1) ... 250s Selecting previously unselected package libtiff6:armhf. 250s Preparing to unpack .../33-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 250s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 250s Selecting previously unselected package libwebpdemux2:armhf. 250s Preparing to unpack .../34-libwebpdemux2_1.4.0-0.1_armhf.deb ... 250s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 250s Selecting previously unselected package libwebpmux3:armhf. 250s Preparing to unpack .../35-libwebpmux3_1.4.0-0.1_armhf.deb ... 250s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 250s Selecting previously unselected package python-pyfaidx-examples. 250s Preparing to unpack .../36-python-pyfaidx-examples_0.8.1.2-1_all.deb ... 250s Unpacking python-pyfaidx-examples (0.8.1.2-1) ... 250s Selecting previously unselected package python3-all. 250s Preparing to unpack .../37-python3-all_3.12.6-0ubuntu1_armhf.deb ... 250s Unpacking python3-all (3.12.6-0ubuntu1) ... 250s Selecting previously unselected package python3-numpy. 250s Preparing to unpack .../38-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 250s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 250s Selecting previously unselected package libopenjp2-7:armhf. 250s Preparing to unpack .../39-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ... 250s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 250s Selecting previously unselected package python3-pil:armhf. 250s Preparing to unpack .../40-python3-pil_10.4.0-1ubuntu1_armhf.deb ... 250s Unpacking python3-pil:armhf (10.4.0-1ubuntu1) ... 250s Selecting previously unselected package python3-cairo. 250s Preparing to unpack .../41-python3-cairo_1.26.1-2_armhf.deb ... 250s Unpacking python3-cairo (1.26.1-2) ... 250s Selecting previously unselected package python3-freetype. 250s Preparing to unpack .../42-python3-freetype_2.4.0-2_all.deb ... 250s Unpacking python3-freetype (2.4.0-2) ... 250s Selecting previously unselected package python3-rlpycairo. 250s Preparing to unpack .../43-python3-rlpycairo_0.3.0-3_all.deb ... 250s Unpacking python3-rlpycairo (0.3.0-3) ... 250s Selecting previously unselected package python3-reportlab. 250s Preparing to unpack .../44-python3-reportlab_4.2.2-1_all.deb ... 250s Unpacking python3-reportlab (4.2.2-1) ... 250s Selecting previously unselected package xml-core. 250s Preparing to unpack .../45-xml-core_0.19_all.deb ... 250s Unpacking xml-core (0.19) ... 251s Selecting previously unselected package w3c-sgml-lib. 251s Preparing to unpack .../46-w3c-sgml-lib_1.3-3_all.deb ... 251s Unpacking w3c-sgml-lib (1.3-3) ... 251s Selecting previously unselected package python3-biopython. 251s Preparing to unpack .../47-python3-biopython_1.83+dfsg1-3_armhf.deb ... 251s Unpacking python3-biopython (1.83+dfsg1-3) ... 251s Selecting previously unselected package python3-importlib-metadata. 251s Preparing to unpack .../48-python3-importlib-metadata_8.2.0-2_all.deb ... 251s Unpacking python3-importlib-metadata (8.2.0-2) ... 251s Selecting previously unselected package python3-iniconfig. 251s Preparing to unpack .../49-python3-iniconfig_1.1.1-2_all.deb ... 251s Unpacking python3-iniconfig (1.1.1-2) ... 251s Selecting previously unselected package python3-packaging. 251s Preparing to unpack .../50-python3-packaging_24.1-1_all.deb ... 251s Unpacking python3-packaging (24.1-1) ... 251s Selecting previously unselected package python3-pluggy. 251s Preparing to unpack .../51-python3-pluggy_1.5.0-1_all.deb ... 251s Unpacking python3-pluggy (1.5.0-1) ... 251s Selecting previously unselected package python3-pyfaidx. 251s Preparing to unpack .../52-python3-pyfaidx_0.8.1.2-1_all.deb ... 251s Unpacking python3-pyfaidx (0.8.1.2-1) ... 251s Selecting previously unselected package python3-pytest. 251s Preparing to unpack .../53-python3-pytest_8.3.2-1_all.deb ... 251s Unpacking python3-pytest (8.3.2-1) ... 251s Selecting previously unselected package tabix. 251s Preparing to unpack .../54-tabix_1.20+ds-2_armhf.deb ... 251s Unpacking tabix (1.20+ds-2) ... 251s Selecting previously unselected package autopkgtest-satdep. 251s Preparing to unpack .../55-1-autopkgtest-satdep.deb ... 251s Unpacking autopkgtest-satdep (0) ... 251s Setting up libhtscodecs2:armhf (1.6.0-1build1) ... 251s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 251s Setting up liblcms2-2:armhf (2.14-2build1) ... 251s Setting up python3-iniconfig (1.1.1-2) ... 251s Setting up libpixman-1-0:armhf (0.42.2-1build1) ... 251s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 251s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 251s Setting up python3-importlib-metadata (8.2.0-2) ... 252s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 252s Setting up python-pyfaidx-examples (0.8.1.2-1) ... 252s Setting up libxcb-render0:armhf (1.17.0-2) ... 252s Setting up x11-common (1:7.7+23ubuntu3) ... 252s Setting up libdeflate0:armhf (1.21-1) ... 252s Setting up python3-all (3.12.6-0ubuntu1) ... 252s Setting up libxcb-shm0:armhf (1.17.0-2) ... 252s Setting up libgomp1:armhf (14.2.0-7ubuntu1) ... 252s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 252s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 252s Setting up libblas3:armhf (3.12.0-3build2) ... 252s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 252s Setting up python3-packaging (24.1-1) ... 252s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 252s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 252s Setting up libimagequant0:armhf (2.18.0-1build1) ... 252s Setting up fonts-dejavu-mono (2.37-8) ... 252s Setting up fonts-dejavu-core (2.37-8) ... 252s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 252s Setting up libgfortran5:armhf (14.2.0-7ubuntu1) ... 252s Setting up python3-pluggy (1.5.0-1) ... 252s Setting up libwebp7:armhf (1.4.0-0.1) ... 252s Setting up libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 252s Setting up libharfbuzz0b:armhf (9.0.0-1) ... 252s Setting up sgml-base (1.31) ... 252s Setting up libwebpmux3:armhf (1.4.0-0.1) ... 252s Setting up tabix (1.20+ds-2) ... 252s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 252s Setting up python3-pyfaidx (0.8.1.2-1) ... 252s Setting up liblapack3:armhf (3.12.0-3build2) ... 253s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 253s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 253s Setting up python3-pytest (8.3.2-1) ... 253s Setting up libwebpdemux2:armhf (1.4.0-0.1) ... 253s Setting up python3-freetype (2.4.0-2) ... 253s Setting up xfonts-utils (1:7.7+7) ... 253s Setting up libraqm0:armhf (0.10.1-1build1) ... 253s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 256s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 256s Setting up xml-core (0.19) ... 256s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 256s Setting up fonts-urw-base35 (20200910-8) ... 256s Setting up libcairo2:armhf (1.18.2-2) ... 256s Setting up python3-pil:armhf (10.4.0-1ubuntu1) ... 257s Setting up python3-cairo (1.26.1-2) ... 257s Setting up python3-rlpycairo (0.3.0-3) ... 257s Setting up python3-reportlab (4.2.2-1) ... 258s Processing triggers for libc-bin (2.40-1ubuntu3) ... 258s Processing triggers for man-db (2.12.1-3) ... 258s Processing triggers for sgml-base (1.31) ... 258s Setting up w3c-sgml-lib (1.3-3) ... 287s Setting up python3-biopython (1.83+dfsg1-3) ... 288s Setting up autopkgtest-satdep (0) ... 306s (Reading database ... 62982 files and directories currently installed.) 306s Removing autopkgtest-satdep (0) ... 312s autopkgtest [00:47:12]: test run-unit-test: [----------------------- 314s Testing with python3.12 in /tmp/autopkgtest.TJISpr/build.1Zr/src: 314s ============================= test session starts ============================== 314s platform linux -- Python 3.12.7, pytest-8.3.2, pluggy-1.5.0 -- /usr/bin/python3.12 314s cachedir: .pytest_cache 314s rootdir: /tmp/autopkgtest.TJISpr/build.1Zr/src 314s configfile: pyproject.toml 314s plugins: typeguard-4.3.0 314s collecting ... collected 136 items 314s 314s tests/test_FastaRecord.py::test_sequence_uppercase PASSED [ 0%] 314s tests/test_FastaRecord.py::test_long_names PASSED [ 1%] 314s tests/test_FastaRecord.py::test_issue_62 PASSED [ 2%] 314s tests/test_FastaRecord.py::test_unpadded_length PASSED [ 2%] 314s tests/test_FastaRecord.py::test_numpy_array PASSED [ 3%] 314s tests/test_FastaRecord_iter.py::test_fetch_whole_fasta PASSED [ 4%] 314s tests/test_FastaRecord_iter.py::test_line_len PASSED [ 5%] 314s tests/test_FastaRecord_iter.py::test_reverse_iter PASSED [ 5%] 314s tests/test_FastaVariant.py::test_fetch_variant SKIPPED (pysam not in...) [ 6%] 314s tests/test_FastaVariant.py::test_fetch_hom_variant SKIPPED (pysam no...) [ 7%] 314s tests/test_FastaVariant.py::test_fetch_het_variant SKIPPED (pysam no...) [ 8%] 314s tests/test_FastaVariant.py::test_fetch_chr_not_in_vcf SKIPPED (pysam...) [ 8%] 314s tests/test_FastaVariant.py::test_all_pos SKIPPED (pysam not installed.) [ 9%] 314s tests/test_FastaVariant.py::test_all_diff SKIPPED (pysam not installed.) [ 10%] 315s tests/test_Fasta_bgzip.py::test_build_issue_126 XFAIL [ 11%] 315s tests/test_Fasta_bgzip.py::test_integer_slice PASSED [ 11%] 315s tests/test_Fasta_bgzip.py::test_integer_index PASSED [ 12%] 315s tests/test_Fasta_bgzip.py::test_fetch_whole_fasta PASSED [ 13%] 315s tests/test_Fasta_bgzip.py::test_line_len PASSED [ 13%] 315s tests/test_Fasta_bgzip.py::test_mutable_bgzf PASSED [ 14%] 315s tests/test_Fasta_bgzip.py::test_long_names XFAIL [ 15%] 315s tests/test_Fasta_bgzip.py::test_fetch_whole_entry PASSED [ 16%] 315s tests/test_Fasta_bgzip.py::test_fetch_middle PASSED [ 16%] 315s tests/test_Fasta_bgzip.py::test_fetch_end PASSED [ 17%] 315s tests/test_Fasta_bgzip.py::test_fetch_border PASSED [ 18%] 315s tests/test_Fasta_bgzip.py::test_rev PASSED [ 19%] 315s tests/test_Fasta_bgzip.py::test_fetch_past_bounds PASSED [ 19%] 315s tests/test_Fasta_bgzip.py::test_fetch_negative PASSED [ 20%] 315s tests/test_Fasta_bgzip.py::test_fetch_reversed_coordinates PASSED [ 21%] 315s tests/test_Fasta_bgzip.py::test_fetch_keyerror PASSED [ 22%] 315s tests/test_Fasta_bgzip.py::test_blank_string PASSED [ 22%] 315s tests/test_Fasta_bgzip.py::test_slice_from_beginning PASSED [ 23%] 315s tests/test_Fasta_bgzip.py::test_slice_from_end PASSED [ 24%] 315s tests/test_Fasta_bgzip.py::test_issue_74_start PASSED [ 25%] 315s tests/test_Fasta_bgzip.py::test_issue_74_consistency PASSED [ 25%] 315s tests/test_Fasta_bgzip.py::test_issue_74_end_faidx PASSED [ 26%] 315s tests/test_Fasta_bgzip.py::test_issue_74_end_fasta PASSED [ 27%] 315s tests/test_Fasta_bgzip.py::test_issue_79_fix PASSED [ 27%] 315s tests/test_Fasta_bgzip.py::test_issue_79_fix_negate PASSED [ 28%] 315s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false PASSED [ 29%] 315s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false_negate PASSED [ 30%] 315s tests/test_Fasta_bgzip.py::test_fetch_border_padded PASSED [ 30%] 315s tests/test_Fasta_integer_index.py::test_integer_slice PASSED [ 31%] 315s tests/test_Fasta_integer_index.py::test_integer_index PASSED [ 32%] 315s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads PASSED [ 33%] 316s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads_and_writes PASSED [ 33%] 317s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_writes PASSED [ 34%] 317s tests/test_Path.py::test_Faidx PASSED [ 35%] 317s tests/test_Path.py::test_Fasta PASSED [ 36%] 317s tests/test_bio_seqio.py::test_fetch_whole_entry PASSED [ 36%] 317s tests/test_bio_seqio.py::test_slice_whole_entry PASSED [ 37%] 317s tests/test_bio_seqio.py::test_revcomp_whole_entry PASSED [ 38%] 317s tests/test_faidx.py::test_short_line_lengths PASSED [ 38%] 317s tests/test_faidx.py::test_fetch_whole_file PASSED [ 39%] 317s tests/test_faidx.py::test_split_entry PASSED [ 40%] 317s tests/test_faidx.py::test_fetch_error PASSED [ 41%] 317s tests/test_faidx.py::test_key_warning PASSED [ 41%] 317s tests/test_faidx.py::test_auto_strand PASSED [ 42%] 317s tests/test_faidx.py::test_regexp PASSED [ 43%] 317s tests/test_faidx.py::test_not_regexp PASSED [ 44%] 317s tests/test_faidx.py::test_not_regexp_multi PASSED [ 44%] 317s tests/test_feature_bounds_check.py::test_index_zero_length PASSED [ 45%] 317s tests/test_feature_bounds_check.py::test_fetch_zero_length PASSED [ 46%] 317s tests/test_feature_bounds_check.py::test_as_raw_zero_length_subsequence PASSED [ 47%] 317s tests/test_feature_bounds_check.py::test_zero_length_subsequence PASSED [ 47%] 317s tests/test_feature_bounds_check.py::test_fetch_whole_entry PASSED [ 48%] 317s tests/test_feature_bounds_check.py::test_fetch_middle PASSED [ 49%] 317s tests/test_feature_bounds_check.py::test_fetch_end PASSED [ 50%] 317s tests/test_feature_bounds_check.py::test_fetch_border PASSED [ 50%] 317s tests/test_feature_bounds_check.py::test_rev PASSED [ 51%] 317s tests/test_feature_bounds_check.py::test_fetch_past_bounds PASSED [ 52%] 317s tests/test_feature_bounds_check.py::test_fetch_negative PASSED [ 52%] 317s tests/test_feature_bounds_check.py::test_fetch_reversed_coordinates PASSED [ 53%] 317s tests/test_feature_bounds_check.py::test_fetch_keyerror PASSED [ 54%] 317s tests/test_feature_bounds_check.py::test_blank_string PASSED [ 55%] 317s tests/test_feature_bounds_check.py::test_slice_from_beginning PASSED [ 55%] 317s tests/test_feature_bounds_check.py::test_slice_from_end PASSED [ 56%] 317s tests/test_feature_bounds_check.py::test_issue_74_start PASSED [ 57%] 317s tests/test_feature_bounds_check.py::test_issue_74_consistency PASSED [ 58%] 317s tests/test_feature_bounds_check.py::test_issue_74_end_faidx PASSED [ 58%] 317s tests/test_feature_bounds_check.py::test_issue_74_end_fasta PASSED [ 59%] 317s tests/test_feature_bounds_check.py::test_issue_79_fix PASSED [ 60%] 317s tests/test_feature_bounds_check.py::test_issue_79_fix_negate PASSED [ 61%] 317s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false PASSED [ 61%] 317s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false_negate PASSED [ 62%] 317s tests/test_feature_default_seq.py::test_fetch_border_padded PASSED [ 63%] 317s tests/test_feature_indexing.py::test_version_issue_206 PASSED [ 63%] 317s tests/test_feature_indexing.py::test_build PASSED [ 64%] 317s tests/test_feature_indexing.py::test_build_issue_141 PASSED [ 65%] 317s tests/test_feature_indexing.py::test_build_issue_111 PASSED [ 66%] 317s tests/test_feature_indexing.py::test_order PASSED [ 66%] 323s tests/test_feature_indexing.py::test_valgrind_short_lines PASSED [ 67%] 328s tests/test_feature_indexing.py::test_valgrind_long_lines PASSED [ 68%] 334s tests/test_feature_indexing.py::test_valgrind_blank_lines PASSED [ 69%] 336s tests/test_feature_indexing.py::test_reindex_on_modification PASSED [ 69%] 336s tests/test_feature_indexing.py::test_build_issue_83 PASSED [ 70%] 336s tests/test_feature_indexing.py::test_build_issue_96_fail_build_faidx PASSED [ 71%] 336s tests/test_feature_indexing.py::test_build_issue_96_fail_read_malformed_index_duplicate_key PASSED [ 72%] 336s tests/test_feature_indexing.py::test_read_back_index PASSED [ 72%] 336s tests/test_feature_indexing.py::test_issue_134_no_build_index PASSED [ 73%] 336s tests/test_feature_indexing.py::test_issue_144_no_defline PASSED [ 74%] 336s tests/test_feature_key_function.py::test_keys PASSED [ 75%] 336s tests/test_feature_key_function.py::test_key_function_by_dictionary_get_key PASSED [ 75%] 336s tests/test_feature_key_function.py::test_key_function_by_fetch PASSED [ 76%] 336s tests/test_feature_key_function.py::test_duplicated_keys PASSED [ 77%] 336s tests/test_feature_key_function.py::test_duplicated_keys_shortest PASSED [ 77%] 336s tests/test_feature_key_function.py::test_duplicated_keys_longest PASSED [ 78%] 336s tests/test_feature_read_ahead_buffer.py::test_buffer_false PASSED [ 79%] 336s tests/test_feature_read_ahead_buffer.py::test_buffer_true PASSED [ 80%] 336s tests/test_feature_read_ahead_buffer.py::test_buffer_exceed PASSED [ 80%] 336s tests/test_feature_read_ahead_buffer.py::test_bounds_error PASSED [ 81%] 336s tests/test_feature_read_ahead_buffer.py::test_buffer_value PASSED [ 82%] 336s tests/test_feature_sequence_as_raw.py::test_as_raw_false PASSED [ 83%] 336s tests/test_feature_sequence_as_raw.py::test_as_raw_true PASSED [ 83%] 336s tests/test_feature_sequence_as_raw.py::test_as_raw_false_error PASSED [ 84%] 336s tests/test_feature_sequence_as_raw.py::test_as_raw_true_error PASSED [ 85%] 336s tests/test_feature_sequence_as_raw.py::test_as_raw_type_when_blen_lt_0 PASSED [ 86%] 336s tests/test_feature_spliced_seq.py::test_split_seq PASSED [ 86%] 336s tests/test_feature_spliced_seq.py::test_get_seq_rc PASSED [ 87%] 336s tests/test_feature_split_char.py::test_keys PASSED [ 88%] 336s tests/test_feature_split_char.py::test_key_function_by_dictionary_get_key PASSED [ 88%] 336s tests/test_feature_split_char.py::test_key_function_by_fetch PASSED [ 89%] 336s tests/test_feature_split_char.py::test_stop PASSED [ 90%] 336s tests/test_fsspec.py::test_fsspec_fetch_whole_file SKIPPED (uncondit...) [ 91%] 336s tests/test_fsspec.py::test_fsspec_default_index SKIPPED (uncondition...) [ 91%] 336s tests/test_fsspec.py::test_fsspec_local_index SKIPPED (unconditional...) [ 92%] 336s tests/test_fsspec.py::test_fsspec_remote_index SKIPPED (unconditiona...) [ 93%] 336s tests/test_sequence_class.py::test_negate PASSED [ 94%] 336s tests/test_sequence_class.py::test_negate_metadata PASSED [ 94%] 336s tests/test_sequence_class.py::test_seq_invalid PASSED [ 95%] 336s tests/test_sequence_class.py::test_integer_index PASSED [ 96%] 336s tests/test_sequence_class.py::test_slice_index PASSED [ 97%] 336s tests/test_sequence_class.py::test_comp_invalid PASSED [ 97%] 336s tests/test_sequence_class.py::test_check_coordinates PASSED [ 98%] 336s tests/test_sequence_class.py::test_comp_valid PASSED [ 99%] 336s tests/test_sequence_class.py::test_comp_empty PASSED [100%] 336s 336s ================= 124 passed, 10 skipped, 2 xfailed in 22.27s ================== 337s autopkgtest [00:47:37]: test run-unit-test: -----------------------] 341s autopkgtest [00:47:41]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 341s run-unit-test PASS 344s autopkgtest [00:47:44]: test autodep8-python3: preparing testbed 398s autopkgtest [00:48:38]: testbed dpkg architecture: armhf 399s autopkgtest [00:48:39]: testbed apt version: 2.9.8 399s autopkgtest [00:48:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 407s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 407s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [31.2 kB] 407s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB] 408s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2268 kB] 408s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 408s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [209 kB] 408s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [1640 kB] 408s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [23.9 kB] 408s Fetched 4430 kB in 1s (3541 kB/s) 408s Reading package lists... 423s tee: /proc/self/fd/2: Permission denied 446s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 446s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 446s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 446s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 447s Reading package lists... 447s Reading package lists... 448s Building dependency tree... 448s Reading state information... 448s Calculating upgrade... 449s The following packages were automatically installed and are no longer required: 449s libperl5.38t64 perl-modules-5.38 449s Use 'apt autoremove' to remove them. 449s The following NEW packages will be installed: 449s libperl5.40 perl-modules-5.40 449s The following packages will be upgraded: 449s base-files distro-info-data fwupd gcc-14-base info install-info iproute2 449s libatomic1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 449s libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 449s libblockdev-utils3 libblockdev3 libdb5.3t64 libdw1t64 libelf1t64 libevdev2 449s libftdi1-2 libfwupd2 libgcc-s1 libinih1 libkeyutils1 liblocale-gettext-perl 449s libpipeline1 libsgutils2-1.46-2 libstdc++6 libtext-charwidth-perl 449s libtext-iconv-perl motd-news-config nano perl perl-base python3-configobj 449s python3-json-pointer python3-lazr.uri python3-zipp sg3-utils sg3-utils-udev 449s vim-common vim-tiny xxd 449s 45 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 449s Need to get 19.6 MB of archives. 449s After this operation, 42.8 MB of additional disk space will be used. 449s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu2 [5274 B] 449s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu2 [68.6 kB] 449s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-6 [3214 kB] 450s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-6 [4140 kB] 450s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-6 [262 kB] 450s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-6 [1674 kB] 450s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 450s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 450s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 450s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 450s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-7ubuntu1 [7842 B] 450s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-7ubuntu1 [51.2 kB] 450s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-7ubuntu1 [711 kB] 450s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-7ubuntu1 [40.8 kB] 450s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 450s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 450s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 450s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 450s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 450s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 450s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 450s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 450s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 450s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 450s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 450s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 450s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 450s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 450s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 450s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.0-2 [17.4 kB] 450s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.0-2 [22.3 kB] 450s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.0-2 [34.3 kB] 450s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.0-2 [6552 B] 450s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.0-2 [13.4 kB] 450s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.0-2 [17.6 kB] 450s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.0-2 [16.5 kB] 450s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.0-2 [8942 B] 450s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.0-2 [44.2 kB] 450s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 450s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 450s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 450s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 450s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 450s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 450s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.20.2-1 [10.1 kB] 450s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 450s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 451s Preconfiguring packages ... 451s Fetched 19.6 MB in 1s (13.3 MB/s) 451s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 451s Preparing to unpack .../motd-news-config_13.5ubuntu2_all.deb ... 451s Unpacking motd-news-config (13.5ubuntu2) over (13.3ubuntu6) ... 451s Preparing to unpack .../base-files_13.5ubuntu2_armhf.deb ... 451s Unpacking base-files (13.5ubuntu2) over (13.3ubuntu6) ... 451s Setting up base-files (13.5ubuntu2) ... 451s Installing new version of config file /etc/issue ... 451s Installing new version of config file /etc/issue.net ... 451s Installing new version of config file /etc/lsb-release ... 452s motd-news.service is a disabled or a static unit not running, not starting it. 452s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 452s Preparing to unpack .../perl_5.40.0-6_armhf.deb ... 452s Unpacking perl (5.40.0-6) over (5.38.2-5) ... 452s Selecting previously unselected package perl-modules-5.40. 452s Preparing to unpack .../perl-modules-5.40_5.40.0-6_all.deb ... 452s Unpacking perl-modules-5.40 (5.40.0-6) ... 452s Selecting previously unselected package libperl5.40:armhf. 452s Preparing to unpack .../libperl5.40_5.40.0-6_armhf.deb ... 452s Unpacking libperl5.40:armhf (5.40.0-6) ... 452s Preparing to unpack .../perl-base_5.40.0-6_armhf.deb ... 452s Unpacking perl-base (5.40.0-6) over (5.38.2-5) ... 453s Setting up perl-base (5.40.0-6) ... 453s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 453s Preparing to unpack .../liblocale-gettext-perl_1.07-7build1_armhf.deb ... 453s Unpacking liblocale-gettext-perl (1.07-7build1) over (1.07-7) ... 453s Preparing to unpack .../libtext-iconv-perl_1.7-8build4_armhf.deb ... 453s Unpacking libtext-iconv-perl:armhf (1.7-8build4) over (1.7-8build3) ... 453s Preparing to unpack .../libtext-charwidth-perl_0.04-11build4_armhf.deb ... 453s Unpacking libtext-charwidth-perl:armhf (0.04-11build4) over (0.04-11build3) ... 453s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_armhf.deb ... 453s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-9) over (5.3.28+dfsg2-7) ... 453s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-9) ... 453s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 453s Preparing to unpack .../libatomic1_14.2.0-7ubuntu1_armhf.deb ... 453s Unpacking libatomic1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 453s Preparing to unpack .../gcc-14-base_14.2.0-7ubuntu1_armhf.deb ... 453s Unpacking gcc-14-base:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 453s Setting up gcc-14-base:armhf (14.2.0-7ubuntu1) ... 453s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 453s Preparing to unpack .../libstdc++6_14.2.0-7ubuntu1_armhf.deb ... 453s Unpacking libstdc++6:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 453s Setting up libstdc++6:armhf (14.2.0-7ubuntu1) ... 453s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 453s Preparing to unpack .../libgcc-s1_14.2.0-7ubuntu1_armhf.deb ... 453s Unpacking libgcc-s1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ... 453s Setting up libgcc-s1:armhf (14.2.0-7ubuntu1) ... 453s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 453s Preparing to unpack .../install-info_7.1.1-1_armhf.deb ... 453s Unpacking install-info (7.1.1-1) over (7.1-3build2) ... 453s Setting up install-info (7.1.1-1) ... 453s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 453s Preparing to unpack .../00-distro-info-data_0.63_all.deb ... 453s Unpacking distro-info-data (0.63) over (0.62) ... 453s Preparing to unpack .../01-libdw1t64_0.192-4_armhf.deb ... 453s Unpacking libdw1t64:armhf (0.192-4) over (0.191-2) ... 453s Preparing to unpack .../02-libelf1t64_0.192-4_armhf.deb ... 453s Unpacking libelf1t64:armhf (0.192-4) over (0.191-2) ... 453s Preparing to unpack .../03-iproute2_6.10.0-2ubuntu1_armhf.deb ... 454s Unpacking iproute2 (6.10.0-2ubuntu1) over (6.10.0-2) ... 454s Preparing to unpack .../04-libkeyutils1_1.6.3-4ubuntu2_armhf.deb ... 454s Unpacking libkeyutils1:armhf (1.6.3-4ubuntu2) over (1.6.3-3build1) ... 454s Preparing to unpack .../05-vim-tiny_2%3a9.1.0777-1ubuntu1_armhf.deb ... 454s Unpacking vim-tiny (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 454s Preparing to unpack .../06-vim-common_2%3a9.1.0777-1ubuntu1_all.deb ... 454s Unpacking vim-common (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 454s Preparing to unpack .../07-xxd_2%3a9.1.0777-1ubuntu1_armhf.deb ... 454s Unpacking xxd (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ... 454s Preparing to unpack .../08-info_7.1.1-1_armhf.deb ... 454s Unpacking info (7.1.1-1) over (7.1-3build2) ... 454s Preparing to unpack .../09-libevdev2_1.13.3+dfsg-1_armhf.deb ... 454s Unpacking libevdev2:armhf (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ... 454s Preparing to unpack .../10-libpipeline1_1.5.8-1_armhf.deb ... 454s Unpacking libpipeline1:armhf (1.5.8-1) over (1.5.7-2) ... 454s Preparing to unpack .../11-nano_8.2-1_armhf.deb ... 454s Unpacking nano (8.2-1) over (8.1-1) ... 454s Preparing to unpack .../12-libfwupd2_1.9.26-2_armhf.deb ... 454s Unpacking libfwupd2:armhf (1.9.26-2) over (1.9.24-1) ... 454s Preparing to unpack .../13-fwupd_1.9.26-2_armhf.deb ... 454s Unpacking fwupd (1.9.26-2) over (1.9.24-1) ... 454s Preparing to unpack .../14-libblockdev-utils3_3.2.0-2_armhf.deb ... 454s Unpacking libblockdev-utils3:armhf (3.2.0-2) over (3.1.1-2) ... 454s Preparing to unpack .../15-libblockdev-crypto3_3.2.0-2_armhf.deb ... 454s Unpacking libblockdev-crypto3:armhf (3.2.0-2) over (3.1.1-2) ... 454s Preparing to unpack .../16-libblockdev-fs3_3.2.0-2_armhf.deb ... 454s Unpacking libblockdev-fs3:armhf (3.2.0-2) over (3.1.1-2) ... 454s Preparing to unpack .../17-libblockdev-loop3_3.2.0-2_armhf.deb ... 454s Unpacking libblockdev-loop3:armhf (3.2.0-2) over (3.1.1-2) ... 454s Preparing to unpack .../18-libblockdev-mdraid3_3.2.0-2_armhf.deb ... 454s Unpacking libblockdev-mdraid3:armhf (3.2.0-2) over (3.1.1-2) ... 454s Preparing to unpack .../19-libblockdev-nvme3_3.2.0-2_armhf.deb ... 454s Unpacking libblockdev-nvme3:armhf (3.2.0-2) over (3.1.1-2) ... 454s Preparing to unpack .../20-libblockdev-part3_3.2.0-2_armhf.deb ... 454s Unpacking libblockdev-part3:armhf (3.2.0-2) over (3.1.1-2) ... 455s Preparing to unpack .../21-libblockdev-swap3_3.2.0-2_armhf.deb ... 455s Unpacking libblockdev-swap3:armhf (3.2.0-2) over (3.1.1-2) ... 455s Preparing to unpack .../22-libblockdev3_3.2.0-2_armhf.deb ... 455s Unpacking libblockdev3:armhf (3.2.0-2) over (3.1.1-2) ... 455s Preparing to unpack .../23-libftdi1-2_1.5-7_armhf.deb ... 455s Unpacking libftdi1-2:armhf (1.5-7) over (1.5-6build5) ... 455s Preparing to unpack .../24-libinih1_58-1ubuntu1_armhf.deb ... 455s Unpacking libinih1:armhf (58-1ubuntu1) over (55-1ubuntu2) ... 455s Preparing to unpack .../25-libsgutils2-1.46-2_1.46-3ubuntu5_armhf.deb ... 455s Unpacking libsgutils2-1.46-2:armhf (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 455s Preparing to unpack .../26-python3-configobj_5.0.9-1_all.deb ... 455s Unpacking python3-configobj (5.0.9-1) over (5.0.8-3) ... 455s Preparing to unpack .../27-python3-json-pointer_2.4-2_all.deb ... 455s Unpacking python3-json-pointer (2.4-2) over (2.0-0ubuntu1) ... 455s Preparing to unpack .../28-python3-lazr.uri_1.0.6-4_all.deb ... 455s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ... 455s Preparing to unpack .../29-python3-zipp_3.20.2-1_all.deb ... 455s Unpacking python3-zipp (3.20.2-1) over (3.20.0-1) ... 455s Preparing to unpack .../30-sg3-utils_1.46-3ubuntu5_armhf.deb ... 455s Unpacking sg3-utils (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 455s Preparing to unpack .../31-sg3-utils-udev_1.46-3ubuntu5_all.deb ... 455s Unpacking sg3-utils-udev (1.46-3ubuntu5) over (1.46-3ubuntu4) ... 455s Setting up libpipeline1:armhf (1.5.8-1) ... 455s Setting up motd-news-config (13.5ubuntu2) ... 455s Setting up libtext-iconv-perl:armhf (1.7-8build4) ... 455s Setting up libtext-charwidth-perl:armhf (0.04-11build4) ... 455s Setting up libkeyutils1:armhf (1.6.3-4ubuntu2) ... 455s Setting up distro-info-data (0.63) ... 455s Setting up libinih1:armhf (58-1ubuntu1) ... 455s Setting up libfwupd2:armhf (1.9.26-2) ... 455s Setting up libsgutils2-1.46-2:armhf (1.46-3ubuntu5) ... 455s Setting up python3-lazr.uri (1.0.6-4) ... 455s Setting up python3-zipp (3.20.2-1) ... 455s Setting up xxd (2:9.1.0777-1ubuntu1) ... 455s Setting up libelf1t64:armhf (0.192-4) ... 455s Setting up libdw1t64:armhf (0.192-4) ... 455s Setting up libftdi1-2:armhf (1.5-7) ... 455s Setting up python3-configobj (5.0.9-1) ... 456s Setting up vim-common (2:9.1.0777-1ubuntu1) ... 456s Installing new version of config file /etc/vim/vimrc ... 456s Setting up libblockdev-utils3:armhf (3.2.0-2) ... 456s Setting up libatomic1:armhf (14.2.0-7ubuntu1) ... 456s Setting up libblockdev-nvme3:armhf (3.2.0-2) ... 456s Setting up nano (8.2-1) ... 456s Setting up libblockdev-fs3:armhf (3.2.0-2) ... 456s Setting up perl-modules-5.40 (5.40.0-6) ... 456s Setting up python3-json-pointer (2.4-2) ... 456s Setting up libevdev2:armhf (1.13.3+dfsg-1) ... 456s Setting up fwupd (1.9.26-2) ... 456s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 456s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 456s fwupd.service is a disabled or a static unit not running, not starting it. 456s Setting up info (7.1.1-1) ... 456s Setting up liblocale-gettext-perl (1.07-7build1) ... 456s Setting up sg3-utils (1.46-3ubuntu5) ... 456s Setting up libblockdev-mdraid3:armhf (3.2.0-2) ... 456s Setting up libblockdev-crypto3:armhf (3.2.0-2) ... 456s Setting up libblockdev-swap3:armhf (3.2.0-2) ... 456s Setting up iproute2 (6.10.0-2ubuntu1) ... 457s Setting up libblockdev-loop3:armhf (3.2.0-2) ... 457s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 457s Setting up libblockdev3:armhf (3.2.0-2) ... 457s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 457s Setting up libblockdev-part3:armhf (3.2.0-2) ... 457s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 457s update-initramfs: deferring update (trigger activated) 457s Setting up libperl5.40:armhf (5.40.0-6) ... 457s Setting up perl (5.40.0-6) ... 457s Processing triggers for dbus (1.14.10-4ubuntu5) ... 457s Processing triggers for install-info (7.1.1-1) ... 457s Processing triggers for initramfs-tools (0.142ubuntu34) ... 457s Processing triggers for libc-bin (2.40-1ubuntu3) ... 457s Processing triggers for man-db (2.12.1-3) ... 458s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-1ubuntu10) ... 458s update-initramfs: deferring update (trigger activated) 458s Processing triggers for initramfs-tools (0.142ubuntu34) ... 458s Reading package lists... 459s Building dependency tree... 459s Reading state information... 460s The following packages will be REMOVED: 460s libperl5.38t64* perl-modules-5.38* 460s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. 460s After this operation, 41.6 MB disk space will be freed. 460s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61462 files and directories currently installed.) 460s Removing libperl5.38t64:armhf (5.38.2-5) ... 460s Removing perl-modules-5.38 (5.38.2-5) ... 460s Processing triggers for man-db (2.12.1-3) ... 460s Processing triggers for libc-bin (2.40-1ubuntu3) ... 463s autopkgtest [00:49:43]: rebooting testbed after setup commands that affected boot 563s Reading package lists... 564s Building dependency tree... 564s Reading state information... 564s Starting pkgProblemResolver with broken count: 0 564s Starting 2 pkgProblemResolver with broken count: 0 564s Done 565s The following additional packages will be installed: 565s python3-all python3-importlib-metadata python3-packaging python3-pyfaidx 565s Recommended packages: 565s python3-biopython 565s The following NEW packages will be installed: 565s autopkgtest-satdep python3-all python3-importlib-metadata python3-packaging 565s python3-pyfaidx 565s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 565s Need to get 92.1 kB/92.8 kB of archives. 565s After this operation, 410 kB of additional disk space will be used. 565s Get:1 /tmp/autopkgtest.TJISpr/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B] 565s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.12.6-0ubuntu1 [886 B] 565s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3-importlib-metadata all 8.2.0-2 [20.3 kB] 565s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 566s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyfaidx all 0.8.1.2-1 [29.6 kB] 566s Fetched 92.1 kB in 0s (232 kB/s) 566s Selecting previously unselected package python3-all. 566s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59532 files and directories currently installed.) 566s Preparing to unpack .../python3-all_3.12.6-0ubuntu1_armhf.deb ... 566s Unpacking python3-all (3.12.6-0ubuntu1) ... 566s Selecting previously unselected package python3-importlib-metadata. 566s Preparing to unpack .../python3-importlib-metadata_8.2.0-2_all.deb ... 566s Unpacking python3-importlib-metadata (8.2.0-2) ... 566s Selecting previously unselected package python3-packaging. 566s Preparing to unpack .../python3-packaging_24.1-1_all.deb ... 566s Unpacking python3-packaging (24.1-1) ... 566s Selecting previously unselected package python3-pyfaidx. 566s Preparing to unpack .../python3-pyfaidx_0.8.1.2-1_all.deb ... 566s Unpacking python3-pyfaidx (0.8.1.2-1) ... 566s Selecting previously unselected package autopkgtest-satdep. 566s Preparing to unpack .../2-autopkgtest-satdep.deb ... 566s Unpacking autopkgtest-satdep (0) ... 566s Setting up python3-importlib-metadata (8.2.0-2) ... 566s Setting up python3-all (3.12.6-0ubuntu1) ... 566s Setting up python3-packaging (24.1-1) ... 566s Setting up python3-pyfaidx (0.8.1.2-1) ... 567s Setting up autopkgtest-satdep (0) ... 567s Processing triggers for man-db (2.12.1-3) ... 579s (Reading database ... 59593 files and directories currently installed.) 579s Removing autopkgtest-satdep (0) ... 590s autopkgtest [00:51:50]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyfaidx; print(pyfaidx)" ; done 590s autopkgtest [00:51:50]: test autodep8-python3: [----------------------- 592s Testing with python3.12: 592s 592s autopkgtest [00:51:52]: test autodep8-python3: -----------------------] 596s autopkgtest [00:51:56]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 596s autodep8-python3 PASS (superficial) 600s autopkgtest [00:52:00]: @@@@@@@@@@@@@@@@@@@@ summary 600s run-unit-test PASS 600s autodep8-python3 PASS (superficial)