0s autopkgtest [15:48:46]: starting date and time: 2025-03-15 15:48:46+0000 0s autopkgtest [15:48:46]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:48:46]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7callt47/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade python-pybedtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.21 lxd-armhf-10.145.243.21:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [15:49:07]: testbed dpkg architecture: armhf 23s autopkgtest [15:49:09]: testbed apt version: 2.9.33 27s autopkgtest [15:49:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 29s autopkgtest [15:49:15]: testbed release detected to be: None 36s autopkgtest [15:49:22]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 38s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 39s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 39s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 40s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 40s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 40s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 41s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 41s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 41s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 41s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 80s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 82s Get:17 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 83s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 84s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 84s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 85s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 103s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 105s Fetched 41.0 MB in 1min 7s (616 kB/s) 106s Reading package lists... 113s autopkgtest [15:50:38]: upgrading testbed (apt dist-upgrade and autopurge) 114s Reading package lists... 114s Building dependency tree... 115s Reading state information... 115s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 115s Starting 2 pkgProblemResolver with broken count: 0 115s Done 116s Entering ResolveByKeep 117s 117s Calculating upgrade... 118s The following packages will be upgraded: 118s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 118s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Need to get 8683 kB of archives. 118s After this operation, 23.6 kB of additional disk space will be used. 118s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 121s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 122s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 128s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 129s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 129s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 129s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 130s Preconfiguring packages ... 130s Fetched 8683 kB in 12s (722 kB/s) 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 131s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 131s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 131s Setting up libc6:armhf (2.41-1ubuntu2) ... 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 131s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 131s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 131s Setting up libc-bin (2.41-1ubuntu2) ... 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 132s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 132s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 132s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 132s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 132s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 132s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 132s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 132s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 133s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 133s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 133s Setting up sos (4.9.0-5) ... 134s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 134s Setting up locales (2.41-1ubuntu2) ... 135s Generating locales (this might take a while)... 137s en_US.UTF-8... done 137s Generation complete. 137s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 138s Setting up strace (6.13+ds-1ubuntu1) ... 138s Processing triggers for man-db (2.13.0-1) ... 139s Processing triggers for systemd (257.3-1ubuntu3) ... 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 143s Starting pkgProblemResolver with broken count: 0 143s Starting 2 pkgProblemResolver with broken count: 0 143s Done 143s Solving dependencies... 144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s autopkgtest [15:51:12]: rebooting testbed after setup commands that affected boot 197s autopkgtest [15:52:03]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 222s autopkgtest [15:52:28]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pybedtools 270s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pybedtools 0.10.0-4build1 (dsc) [2623 B] 270s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pybedtools 0.10.0-4build1 (tar) [12.0 MB] 270s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pybedtools 0.10.0-4build1 (diff) [33.5 kB] 270s gpgv: Signature made Tue Mar 4 16:16:18 2025 UTC 270s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 270s gpgv: Can't check signature: No public key 270s dpkg-source: warning: cannot verify inline signature for ./python-pybedtools_0.10.0-4build1.dsc: no acceptable signature found 271s autopkgtest [15:53:17]: testing package python-pybedtools version 0.10.0-4build1 273s autopkgtest [15:53:19]: build not needed 276s autopkgtest [15:53:22]: test pybuild-autopkgtest: preparing testbed 277s Reading package lists... 278s Building dependency tree... 278s Reading state information... 278s Starting pkgProblemResolver with broken count: 0 278s Starting 2 pkgProblemResolver with broken count: 0 279s Done 280s The following NEW packages will be installed: 280s autoconf automake autopoint autotools-dev bedtools blt build-essential cpp 280s cpp-14 cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cython3 debhelper 280s debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common 280s dwz fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 280s fonts-lyx g++ g++-14 g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc 280s gcc-14 gcc-14-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gettext 280s intltool-debian libarchive-zip-perl libasan8 libblas3 libc-dev-bin libc6-dev 280s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdebhelper-perl libdeflate0 280s libdw1t64 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 280s libfreetype6 libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 280s libharfbuzz0b libhts3t64 libhtscodecs2 libice6 libimagequant0 libisl23 280s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 280s libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0 280s liblcms2-2 liblerc4 libmpc3 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 280s libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libpython3-all-dev 280s libpython3-dev libpython3.13 libpython3.13-dev libqhull-r8.0 libraqm0 280s libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0 280s libtiff6 libtk8.6 libtool libubsan1 libwebp7 libwebpdemux2 libwebpmux3 280s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 libxt6t64 280s linux-libc-dev m4 po-debconf pybedtools-bin pybuild-plugin-autopkgtest 280s pybuild-plugin-pyproject python-matplotlib-data python-pybedtools-doc 280s python3-alabaster python3-all python3-all-dev python3-brotli python3-build 280s python3-contourpy python3-cycler python3-decorator python3-defusedxml 280s python3-dev python3-docutils python3-fonttools python3-fs python3-imagesize 280s python3-iniconfig python3-installer python3-kiwisolver python3-lxml 280s python3-lz4 python3-matplotlib python3-mpmath python3-numpy 280s python3-numpy-dev python3-numpydoc python3-pandas python3-pandas-lib 280s python3-pil python3-pil.imagetk python3-platformdirs python3-pluggy 280s python3-psutil python3-pybedtools python3-pyproject-hooks python3-pysam 280s python3-pytest python3-pytz python3-roman python3-scipy 280s python3-snowballstemmer python3-sphinx python3-sympy python3-tabulate 280s python3-tk python3-toml python3-tz python3-ufolib2 python3-wheel 280s python3.12-tk python3.13-dev python3.13-tk r-base-core rpcsvc-proto 280s sgml-base sphinx-common tk8.6-blt2.5 unicode-data unzip x11-common xdg-utils 280s xml-core zip zlib1g-dev 280s 0 upgraded, 176 newly installed, 0 to remove and 0 not upgraded. 280s Need to get 191 MB of archives. 280s After this operation, 612 MB of additional disk space will be used. 280s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy-dev armhf 1:2.2.3+ds-5 [141 kB] 280s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB] 281s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB] 281s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 285s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:2.2.3+ds-5 [3725 kB] 292s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB] 292s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf m4 armhf 1.4.19-7 [238 kB] 292s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf autoconf all 2.72-3ubuntu1 [383 kB] 293s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf autotools-dev all 20220109.1 [44.9 kB] 293s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf automake all 1:1.17-3ubuntu1 [572 kB] 294s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf autopoint all 0.23.1-1 [619 kB] 295s Get:12 http://ftpmaster.internal/ubuntu plucky/universe armhf bedtools armhf 2.31.1+dfsg-2 [739 kB] 297s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 298s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 299s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 300s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 301s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-2ubuntu1 [37.5 kB] 302s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-2ubuntu1 [114 kB] 302s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 302s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 302s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 302s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 302s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 303s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-8 [527 kB] 304s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-8 [4824 B] 304s Get:26 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-dev-bin armhf 2.41-1ubuntu2 [23.0 kB] 304s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.14.0-10.10 [1683 kB] 307s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.38-1 [120 kB] 308s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 308s Get:30 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6-dev armhf 2.41-1ubuntu2 [1396 kB] 311s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB] 312s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 312s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [9220 kB] 329s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-17ubuntu3 [1030 B] 329s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [5578 B] 329s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.2.0-1ubuntu1 [22.4 kB] 329s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 15-20250222-0ubuntu1 [38.9 kB] 329s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 329s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 15-20250222-0ubuntu1 [2955 kB] 335s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 15-20250222-0ubuntu1 [1191 kB] 337s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-17ubuntu3 [897 kB] 339s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [18.0 MB] 366s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14 armhf 14.2.0-17ubuntu3 [506 kB] 367s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [1218 B] 367s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf gcc armhf 4:14.2.0-1ubuntu1 [5004 B] 367s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-17ubuntu3 [2573 kB] 370s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [10.5 MB] 385s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14 armhf 14.2.0-17ubuntu3 [21.8 kB] 385s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf g++-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [966 B] 385s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf g++ armhf 4:14.2.0-1ubuntu1 [1084 B] 385s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf build-essential armhf 12.10ubuntu1 [4928 B] 385s Get:52 http://ftpmaster.internal/ubuntu plucky/universe armhf cython3 armhf 3.0.11+dfsg-2ubuntu2 [2469 kB] 389s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 389s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libtool all 2.5.4-4 [168 kB] 389s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf dh-autoreconf all 20 [16.1 kB] 389s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] 390s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 390s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf dh-strip-nondeterminism all 1.14.1-2 [5064 B] 390s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 390s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf debugedit armhf 1:5.1-2 [46.7 kB] 390s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf dwz armhf 0.15-1build6 [116 kB] 390s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf gettext armhf 0.23.1-1 [1053 kB] 392s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] 392s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf po-debconf all 1.0.21+nmu1 [233 kB] 393s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf debhelper all 13.24.1ubuntu2 [895 kB] 394s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf dh-python all 6.20250308 [118 kB] 394s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB] 394s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf docutils-common all 0.21.2+dfsg-2 [131 kB] 394s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-2ubuntu1 [190 kB] 395s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.3-1 [171 kB] 395s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 395s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 395s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 395s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 396s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB] 396s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 396s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libexpat1-dev armhf 2.6.4-1 [121 kB] 396s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 396s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB] 397s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf libhtscodecs2 armhf 1.6.1-2 [67.5 kB] 397s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf libhts3t64 armhf 1.21+ds-1 [399 kB] 398s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 398s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 398s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 398s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 398s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 398s Get:87 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 399s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 399s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-sphinxdoc all 8.1.3-4 [30.9 kB] 399s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-perl all 4.10000-1 [81.9 kB] 399s Get:91 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 399s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 399s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 400s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf libthai-data all 0.1.29-2build1 [158 kB] 400s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB] 400s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf libpango-1.0-0 armhf 1.56.2-1 [216 kB] 400s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf libpangoft2-1.0-0 armhf 1.56.2-1 [43.6 kB] 400s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf libpangocairo-1.0-0 armhf 1.56.2-1 [25.1 kB] 400s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper2 armhf 2.2.5-0.3 [16.3 kB] 400s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libpaper-utils armhf 2.2.5-0.3 [14.2 kB] 400s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13 armhf 3.13.2-2 [2079 kB] 404s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1ubuntu1 [880 kB] 405s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-dev armhf 3.13.2-2 [4265 kB] 410s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3-dev armhf 3.13.2-2 [10.7 kB] 410s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3-all-dev armhf 3.13.2-2 [910 B] 410s Get:106 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 410s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.2-1 [12.4 kB] 410s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 410s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB] 410s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 410s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 411s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 411s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.5.0-0.1 [11.5 kB] 411s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.5.0-0.1 [22.4 kB] 411s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu2 [152 kB] 411s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libxt6t64 armhf 1:1.2.1-1.2build1 [145 kB] 411s Get:117 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pysam armhf 0.23.0+ds-1build1 [3569 kB] 415s Get:118 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pybedtools armhf 0.10.0-4build1 [12.2 MB] 429s Get:119 http://ftpmaster.internal/ubuntu plucky/universe armhf pybedtools-bin all 0.10.0-4build1 [3226 B] 429s Get:120 http://ftpmaster.internal/ubuntu plucky/universe armhf pybuild-plugin-autopkgtest all 6.20250308 [1744 B] 429s Get:121 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 429s Get:122 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-toml all 0.10.2-1 [16.5 kB] 429s Get:123 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-wheel all 0.45.1-1 [57.7 kB] 429s Get:124 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-build all 1.2.2-1 [31.0 kB] 429s Get:125 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 429s Get:126 http://ftpmaster.internal/ubuntu plucky/universe armhf pybuild-plugin-pyproject all 6.20250308 [1726 B] 429s Get:127 http://ftpmaster.internal/ubuntu plucky/universe armhf python-matplotlib-data all 3.8.3-7build1 [2934 kB] 432s Get:128 http://ftpmaster.internal/ubuntu plucky/universe armhf python-pybedtools-doc all 0.10.0-4build1 [269 kB] 432s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.13.2-2 [886 B] 432s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-dev armhf 3.13.2-2 [509 kB] 433s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dev armhf 3.13.2-2 [26.7 kB] 433s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all-dev armhf 3.13.2-2 [912 B] 433s Get:133 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build4 [322 kB] 433s Get:134 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.1-1build1 [195 kB] 433s Get:135 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B] 433s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 433s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-defusedxml all 0.7.1-3 [42.2 kB] 433s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-roman all 5.0-1 [10.3 kB] 433s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-docutils all 0.21.2+dfsg-2 [409 kB] 434s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-platformdirs all 4.3.6-1 [16.8 kB] 434s Get:141 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-7 [90.8 kB] 434s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.1-1build1 [1282 kB] 436s Get:143 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.4.0+dfsg-1build1 [25.3 kB] 436s Get:144 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.14.1-4ubuntu2 [16.7 MB] 454s Get:145 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 455s Get:146 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-5 [4229 kB] 460s Get:147 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 460s Get:148 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB] 469s Get:149 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.55.3-2build1 [1462 kB] 471s Get:150 http://ftpmaster.internal/ubuntu plucky/main armhf python3-imagesize all 1.4.1-1 [6844 B] 471s Get:151 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 471s Get:152 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-3build1 [57.7 kB] 471s Get:153 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.3-2 [172 kB] 471s Get:154 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 11.1.0-5build1 [435 kB] 471s Get:155 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.9-1 [113 kB] 471s Get:156 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-tk armhf 3.13.2-2 [103 kB] 471s Get:157 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tk armhf 3.13.1-1 [9770 B] 471s Get:158 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 11.1.0-5build1 [9226 B] 471s Get:159 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib armhf 3.8.3-7build1 [17.3 MB] 490s Get:160 http://ftpmaster.internal/ubuntu plucky/main armhf sphinx-common all 8.1.3-4 [663 kB] 491s Get:161 http://ftpmaster.internal/ubuntu plucky/main armhf python3-alabaster all 0.7.16-0.1 [18.5 kB] 491s Get:162 http://ftpmaster.internal/ubuntu plucky/main armhf python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 491s Get:163 http://ftpmaster.internal/ubuntu plucky/main armhf python3-sphinx all 8.1.3-4 [474 kB] 491s Get:164 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tabulate all 0.9.0-1 [45.3 kB] 491s Get:165 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-numpydoc all 1.8.0-1 [52.4 kB] 491s Get:166 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pytz all 2025.1-3 [162 kB] 492s Get:167 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2025.1-3 [1866 B] 492s Get:168 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-8build1 [4877 kB] 497s Get:169 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 500s Get:170 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 500s Get:171 http://ftpmaster.internal/ubuntu plucky/main armhf python3-psutil armhf 5.9.8-2build3 [194 kB] 501s Get:172 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.5-1 [252 kB] 501s Get:173 http://ftpmaster.internal/ubuntu plucky/main armhf zip armhf 3.0-14ubuntu2 [164 kB] 501s Get:174 http://ftpmaster.internal/ubuntu plucky/main armhf unzip armhf 6.0-28ubuntu6 [167 kB] 501s Get:175 http://ftpmaster.internal/ubuntu plucky/main armhf xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 501s Get:176 http://ftpmaster.internal/ubuntu plucky/universe armhf r-base-core armhf 4.4.3-1 [28.2 MB] 532s Preconfiguring packages ... 533s Fetched 191 MB in 4min 12s (759 kB/s) 533s Selecting previously unselected package python3-numpy-dev:armhf. 533s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 533s Preparing to unpack .../000-python3-numpy-dev_1%3a2.2.3+ds-5_armhf.deb ... 533s Unpacking python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 533s Selecting previously unselected package libblas3:armhf. 533s Preparing to unpack .../001-libblas3_3.12.1-2_armhf.deb ... 533s Unpacking libblas3:armhf (3.12.1-2) ... 533s Selecting previously unselected package libgfortran5:armhf. 533s Preparing to unpack .../002-libgfortran5_15-20250222-0ubuntu1_armhf.deb ... 533s Unpacking libgfortran5:armhf (15-20250222-0ubuntu1) ... 533s Selecting previously unselected package liblapack3:armhf. 533s Preparing to unpack .../003-liblapack3_3.12.1-2_armhf.deb ... 533s Unpacking liblapack3:armhf (3.12.1-2) ... 533s Selecting previously unselected package python3-numpy. 533s Preparing to unpack .../004-python3-numpy_1%3a2.2.3+ds-5_armhf.deb ... 533s Unpacking python3-numpy (1:2.2.3+ds-5) ... 533s Selecting previously unselected package sgml-base. 533s Preparing to unpack .../005-sgml-base_1.31_all.deb ... 533s Unpacking sgml-base (1.31) ... 533s Selecting previously unselected package m4. 533s Preparing to unpack .../006-m4_1.4.19-7_armhf.deb ... 533s Unpacking m4 (1.4.19-7) ... 533s Selecting previously unselected package autoconf. 533s Preparing to unpack .../007-autoconf_2.72-3ubuntu1_all.deb ... 533s Unpacking autoconf (2.72-3ubuntu1) ... 533s Selecting previously unselected package autotools-dev. 533s Preparing to unpack .../008-autotools-dev_20220109.1_all.deb ... 533s Unpacking autotools-dev (20220109.1) ... 533s Selecting previously unselected package automake. 533s Preparing to unpack .../009-automake_1%3a1.17-3ubuntu1_all.deb ... 533s Unpacking automake (1:1.17-3ubuntu1) ... 533s Selecting previously unselected package autopoint. 533s Preparing to unpack .../010-autopoint_0.23.1-1_all.deb ... 533s Unpacking autopoint (0.23.1-1) ... 533s Selecting previously unselected package bedtools. 533s Preparing to unpack .../011-bedtools_2.31.1+dfsg-2_armhf.deb ... 533s Unpacking bedtools (2.31.1+dfsg-2) ... 533s Selecting previously unselected package libtcl8.6:armhf. 533s Preparing to unpack .../012-libtcl8.6_8.6.16+dfsg-1_armhf.deb ... 533s Unpacking libtcl8.6:armhf (8.6.16+dfsg-1) ... 534s Selecting previously unselected package libfreetype6:armhf. 534s Preparing to unpack .../013-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 534s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 534s Selecting previously unselected package fonts-dejavu-mono. 534s Preparing to unpack .../014-fonts-dejavu-mono_2.37-8_all.deb ... 534s Unpacking fonts-dejavu-mono (2.37-8) ... 534s Selecting previously unselected package fonts-dejavu-core. 534s Preparing to unpack .../015-fonts-dejavu-core_2.37-8_all.deb ... 534s Unpacking fonts-dejavu-core (2.37-8) ... 534s Selecting previously unselected package fontconfig-config. 534s Preparing to unpack .../016-fontconfig-config_2.15.0-2ubuntu1_armhf.deb ... 534s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 534s Selecting previously unselected package libfontconfig1:armhf. 534s Preparing to unpack .../017-libfontconfig1_2.15.0-2ubuntu1_armhf.deb ... 534s Unpacking libfontconfig1:armhf (2.15.0-2ubuntu1) ... 534s Selecting previously unselected package libxrender1:armhf. 534s Preparing to unpack .../018-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 534s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 534s Selecting previously unselected package libxft2:armhf. 534s Preparing to unpack .../019-libxft2_2.3.6-1build1_armhf.deb ... 534s Unpacking libxft2:armhf (2.3.6-1build1) ... 534s Selecting previously unselected package x11-common. 534s Preparing to unpack .../020-x11-common_1%3a7.7+23ubuntu3_all.deb ... 534s Unpacking x11-common (1:7.7+23ubuntu3) ... 534s Selecting previously unselected package libxss1:armhf. 534s Preparing to unpack .../021-libxss1_1%3a1.2.3-1build3_armhf.deb ... 534s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 534s Selecting previously unselected package libtk8.6:armhf. 534s Preparing to unpack .../022-libtk8.6_8.6.16-1_armhf.deb ... 534s Unpacking libtk8.6:armhf (8.6.16-1) ... 534s Selecting previously unselected package tk8.6-blt2.5. 534s Preparing to unpack .../023-tk8.6-blt2.5_2.5.3+dfsg-8_armhf.deb ... 534s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 534s Selecting previously unselected package blt. 534s Preparing to unpack .../024-blt_2.5.3+dfsg-8_armhf.deb ... 534s Unpacking blt (2.5.3+dfsg-8) ... 534s Selecting previously unselected package libc-dev-bin. 534s Preparing to unpack .../025-libc-dev-bin_2.41-1ubuntu2_armhf.deb ... 534s Unpacking libc-dev-bin (2.41-1ubuntu2) ... 534s Selecting previously unselected package linux-libc-dev:armhf. 534s Preparing to unpack .../026-linux-libc-dev_6.14.0-10.10_armhf.deb ... 534s Unpacking linux-libc-dev:armhf (6.14.0-10.10) ... 535s Selecting previously unselected package libcrypt-dev:armhf. 535s Preparing to unpack .../027-libcrypt-dev_1%3a4.4.38-1_armhf.deb ... 535s Unpacking libcrypt-dev:armhf (1:4.4.38-1) ... 535s Selecting previously unselected package rpcsvc-proto. 535s Preparing to unpack .../028-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 535s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 535s Selecting previously unselected package libc6-dev:armhf. 535s Preparing to unpack .../029-libc6-dev_2.41-1ubuntu2_armhf.deb ... 535s Unpacking libc6-dev:armhf (2.41-1ubuntu2) ... 535s Selecting previously unselected package libisl23:armhf. 535s Preparing to unpack .../030-libisl23_0.27-1_armhf.deb ... 535s Unpacking libisl23:armhf (0.27-1) ... 535s Selecting previously unselected package libmpc3:armhf. 535s Preparing to unpack .../031-libmpc3_1.3.1-1build2_armhf.deb ... 535s Unpacking libmpc3:armhf (1.3.1-1build2) ... 535s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 535s Preparing to unpack .../032-cpp-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 535s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 535s Selecting previously unselected package cpp-14. 535s Preparing to unpack .../033-cpp-14_14.2.0-17ubuntu3_armhf.deb ... 535s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 535s Selecting previously unselected package cpp-arm-linux-gnueabihf. 535s Preparing to unpack .../034-cpp-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 535s Unpacking cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 535s Selecting previously unselected package cpp. 535s Preparing to unpack .../035-cpp_4%3a14.2.0-1ubuntu1_armhf.deb ... 535s Unpacking cpp (4:14.2.0-1ubuntu1) ... 535s Selecting previously unselected package libcc1-0:armhf. 535s Preparing to unpack .../036-libcc1-0_15-20250222-0ubuntu1_armhf.deb ... 535s Unpacking libcc1-0:armhf (15-20250222-0ubuntu1) ... 535s Selecting previously unselected package libgomp1:armhf. 535s Preparing to unpack .../037-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 535s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 536s Selecting previously unselected package libasan8:armhf. 536s Preparing to unpack .../038-libasan8_15-20250222-0ubuntu1_armhf.deb ... 536s Unpacking libasan8:armhf (15-20250222-0ubuntu1) ... 536s Selecting previously unselected package libubsan1:armhf. 536s Preparing to unpack .../039-libubsan1_15-20250222-0ubuntu1_armhf.deb ... 536s Unpacking libubsan1:armhf (15-20250222-0ubuntu1) ... 536s Selecting previously unselected package libgcc-14-dev:armhf. 536s Preparing to unpack .../040-libgcc-14-dev_14.2.0-17ubuntu3_armhf.deb ... 536s Unpacking libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 536s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 536s Preparing to unpack .../041-gcc-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 536s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 536s Selecting previously unselected package gcc-14. 536s Preparing to unpack .../042-gcc-14_14.2.0-17ubuntu3_armhf.deb ... 536s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 536s Selecting previously unselected package gcc-arm-linux-gnueabihf. 536s Preparing to unpack .../043-gcc-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 536s Unpacking gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 536s Selecting previously unselected package gcc. 536s Preparing to unpack .../044-gcc_4%3a14.2.0-1ubuntu1_armhf.deb ... 536s Unpacking gcc (4:14.2.0-1ubuntu1) ... 536s Selecting previously unselected package libstdc++-14-dev:armhf. 536s Preparing to unpack .../045-libstdc++-14-dev_14.2.0-17ubuntu3_armhf.deb ... 536s Unpacking libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 537s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 537s Preparing to unpack .../046-g++-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 537s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 537s Selecting previously unselected package g++-14. 537s Preparing to unpack .../047-g++-14_14.2.0-17ubuntu3_armhf.deb ... 537s Unpacking g++-14 (14.2.0-17ubuntu3) ... 537s Selecting previously unselected package g++-arm-linux-gnueabihf. 537s Preparing to unpack .../048-g++-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 537s Unpacking g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 537s Selecting previously unselected package g++. 537s Preparing to unpack .../049-g++_4%3a14.2.0-1ubuntu1_armhf.deb ... 537s Unpacking g++ (4:14.2.0-1ubuntu1) ... 537s Selecting previously unselected package build-essential. 537s Preparing to unpack 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unselected package libfile-stripnondeterminism-perl. 537s Preparing to unpack .../056-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 537s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 538s Selecting previously unselected package dh-strip-nondeterminism. 538s Preparing to unpack .../057-dh-strip-nondeterminism_1.14.1-2_all.deb ... 538s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 538s Selecting previously unselected package libdw1t64:armhf. 538s Preparing to unpack .../058-libdw1t64_0.192-4_armhf.deb ... 538s Unpacking libdw1t64:armhf (0.192-4) ... 538s Selecting previously unselected package debugedit. 538s Preparing to unpack .../059-debugedit_1%3a5.1-2_armhf.deb ... 538s Unpacking debugedit (1:5.1-2) ... 538s Selecting previously unselected package dwz. 538s Preparing to unpack .../060-dwz_0.15-1build6_armhf.deb ... 538s Unpacking dwz (0.15-1build6) ... 538s Selecting previously unselected package gettext. 538s Preparing to unpack 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(1.17.0-2) ... 538s Selecting previously unselected package libcairo2:armhf. 538s Preparing to unpack .../073-libcairo2_1.18.2-2_armhf.deb ... 538s Unpacking libcairo2:armhf (1.18.2-2) ... 538s Selecting previously unselected package libdatrie1:armhf. 538s Preparing to unpack .../074-libdatrie1_0.2.13-3build1_armhf.deb ... 538s Unpacking libdatrie1:armhf (0.2.13-3build1) ... 539s Selecting previously unselected package libdeflate0:armhf. 539s Preparing to unpack .../075-libdeflate0_1.23-1_armhf.deb ... 539s Unpacking libdeflate0:armhf (1.23-1) ... 539s Selecting previously unselected package libexpat1-dev:armhf. 539s Preparing to unpack .../076-libexpat1-dev_2.6.4-1_armhf.deb ... 539s Unpacking libexpat1-dev:armhf (2.6.4-1) ... 539s Selecting previously unselected package libgraphite2-3:armhf. 539s Preparing to unpack .../077-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 539s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 539s Selecting previously unselected package libharfbuzz0b:armhf. 539s Preparing to unpack .../078-libharfbuzz0b_10.2.0-1_armhf.deb ... 539s Unpacking libharfbuzz0b:armhf (10.2.0-1) ... 539s Selecting previously unselected package libhtscodecs2:armhf. 539s Preparing to unpack .../079-libhtscodecs2_1.6.1-2_armhf.deb ... 539s Unpacking libhtscodecs2:armhf (1.6.1-2) ... 539s Selecting previously unselected package libhts3t64:armhf. 539s Preparing to unpack .../080-libhts3t64_1.21+ds-1_armhf.deb ... 539s Unpacking libhts3t64:armhf (1.21+ds-1) ... 539s Selecting previously unselected package libice6:armhf. 539s Preparing to unpack .../081-libice6_2%3a1.1.1-1_armhf.deb ... 539s Unpacking libice6:armhf (2:1.1.1-1) ... 539s Selecting previously unselected package libimagequant0:armhf. 539s Preparing to unpack .../082-libimagequant0_2.18.0-1build1_armhf.deb ... 539s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 539s Selecting previously unselected package libjpeg-turbo8:armhf. 539s Preparing to unpack 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.../088-libjs-sphinxdoc_8.1.3-4_all.deb ... 539s Unpacking libjs-sphinxdoc (8.1.3-4) ... 539s Selecting previously unselected package libjson-perl. 539s Preparing to unpack .../089-libjson-perl_4.10000-1_all.deb ... 539s Unpacking libjson-perl (4.10000-1) ... 539s Selecting previously unselected package liblbfgsb0:armhf. 539s Preparing to unpack .../090-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 539s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 539s Selecting previously unselected package liblcms2-2:armhf. 539s Preparing to unpack .../091-liblcms2-2_2.16-2_armhf.deb ... 539s Unpacking liblcms2-2:armhf (2.16-2) ... 539s Selecting previously unselected package liblerc4:armhf. 539s Preparing to unpack .../092-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 539s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 539s Selecting previously unselected package libthai-data. 539s Preparing to unpack .../093-libthai-data_0.1.29-2build1_all.deb ... 539s Unpacking libthai-data (0.1.29-2build1) ... 540s Selecting previously unselected package libthai0:armhf. 540s Preparing to unpack .../094-libthai0_0.1.29-2build1_armhf.deb ... 540s Unpacking libthai0:armhf (0.1.29-2build1) ... 540s Selecting previously unselected package libpango-1.0-0:armhf. 540s Preparing to unpack .../095-libpango-1.0-0_1.56.2-1_armhf.deb ... 540s Unpacking libpango-1.0-0:armhf (1.56.2-1) ... 540s Selecting previously unselected package libpangoft2-1.0-0:armhf. 540s Preparing to unpack .../096-libpangoft2-1.0-0_1.56.2-1_armhf.deb ... 540s Unpacking libpangoft2-1.0-0:armhf (1.56.2-1) ... 540s Selecting previously unselected package libpangocairo-1.0-0:armhf. 540s Preparing to unpack .../097-libpangocairo-1.0-0_1.56.2-1_armhf.deb ... 540s Unpacking libpangocairo-1.0-0:armhf (1.56.2-1) ... 540s Selecting previously unselected package libpaper2:armhf. 540s Preparing to unpack .../098-libpaper2_2.2.5-0.3_armhf.deb ... 540s Unpacking libpaper2:armhf (2.2.5-0.3) ... 540s Selecting previously unselected package libpaper-utils. 540s Preparing to unpack .../099-libpaper-utils_2.2.5-0.3_armhf.deb ... 540s Unpacking libpaper-utils (2.2.5-0.3) ... 540s Selecting previously unselected package libpython3.13:armhf. 540s Preparing to unpack .../100-libpython3.13_3.13.2-2_armhf.deb ... 540s Unpacking libpython3.13:armhf (3.13.2-2) ... 540s Selecting previously unselected package zlib1g-dev:armhf. 540s Preparing to unpack .../101-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_armhf.deb ... 540s Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 540s Selecting previously unselected package libpython3.13-dev:armhf. 540s Preparing to unpack .../102-libpython3.13-dev_3.13.2-2_armhf.deb ... 540s Unpacking libpython3.13-dev:armhf (3.13.2-2) ... 540s Selecting previously unselected package libpython3-dev:armhf. 540s Preparing to unpack .../103-libpython3-dev_3.13.2-2_armhf.deb ... 540s Unpacking libpython3-dev:armhf (3.13.2-2) ... 540s Selecting previously unselected package libpython3-all-dev:armhf. 540s Preparing to unpack .../104-libpython3-all-dev_3.13.2-2_armhf.deb ... 540s Unpacking libpython3-all-dev:armhf (3.13.2-2) ... 540s Selecting previously unselected package libqhull-r8.0:armhf. 540s Preparing to unpack .../105-libqhull-r8.0_2020.2-6build1_armhf.deb ... 540s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 540s Selecting previously unselected package libraqm0:armhf. 541s Preparing to unpack .../106-libraqm0_0.10.2-1_armhf.deb ... 541s Unpacking libraqm0:armhf (0.10.2-1) ... 541s Selecting previously unselected package libsharpyuv0:armhf. 541s Preparing to unpack .../107-libsharpyuv0_1.5.0-0.1_armhf.deb ... 541s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 541s Selecting previously unselected package libsm6:armhf. 541s Preparing to unpack .../108-libsm6_2%3a1.2.4-1_armhf.deb ... 541s Unpacking libsm6:armhf (2:1.2.4-1) ... 541s Selecting previously unselected package libjbig0:armhf. 541s Preparing to unpack .../109-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 541s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 541s Selecting previously unselected package libwebp7:armhf. 541s Preparing to unpack .../110-libwebp7_1.5.0-0.1_armhf.deb ... 541s Unpacking libwebp7:armhf (1.5.0-0.1) ... 541s Selecting previously unselected package libtiff6:armhf. 541s Preparing to unpack .../111-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 541s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 541s Selecting previously unselected package libwebpdemux2:armhf. 541s Preparing to unpack .../112-libwebpdemux2_1.5.0-0.1_armhf.deb ... 541s Unpacking libwebpdemux2:armhf (1.5.0-0.1) ... 541s Selecting previously unselected package libwebpmux3:armhf. 541s Preparing to unpack .../113-libwebpmux3_1.5.0-0.1_armhf.deb ... 541s Unpacking libwebpmux3:armhf (1.5.0-0.1) ... 541s Selecting previously unselected package libxslt1.1:armhf. 541s Preparing to unpack .../114-libxslt1.1_1.1.39-0exp1ubuntu2_armhf.deb ... 541s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu2) ... 541s Selecting previously unselected package libxt6t64:armhf. 541s Preparing to unpack .../115-libxt6t64_1%3a1.2.1-1.2build1_armhf.deb ... 541s Unpacking libxt6t64:armhf (1:1.2.1-1.2build1) ... 541s Selecting previously unselected package python3-pysam. 541s Preparing to unpack .../116-python3-pysam_0.23.0+ds-1build1_armhf.deb ... 541s Unpacking python3-pysam (0.23.0+ds-1build1) ... 541s Selecting previously unselected package python3-pybedtools. 541s Preparing to unpack .../117-python3-pybedtools_0.10.0-4build1_armhf.deb ... 541s Unpacking python3-pybedtools (0.10.0-4build1) ... 541s Selecting previously unselected package pybedtools-bin. 541s Preparing to unpack .../118-pybedtools-bin_0.10.0-4build1_all.deb ... 541s Unpacking pybedtools-bin (0.10.0-4build1) ... 541s Selecting previously unselected package pybuild-plugin-autopkgtest. 541s Preparing to unpack .../119-pybuild-plugin-autopkgtest_6.20250308_all.deb ... 541s Unpacking pybuild-plugin-autopkgtest (6.20250308) ... 541s Selecting previously unselected package python3-pyproject-hooks. 541s Preparing to unpack .../120-python3-pyproject-hooks_1.2.0-1_all.deb ... 541s Unpacking python3-pyproject-hooks (1.2.0-1) ... 542s Selecting previously unselected package python3-toml. 542s Preparing to unpack .../121-python3-toml_0.10.2-1_all.deb ... 542s Unpacking python3-toml (0.10.2-1) ... 542s Selecting previously unselected package python3-wheel. 542s Preparing to unpack .../122-python3-wheel_0.45.1-1_all.deb ... 542s Unpacking python3-wheel (0.45.1-1) ... 542s Selecting previously unselected package python3-build. 542s Preparing to unpack .../123-python3-build_1.2.2-1_all.deb ... 542s Unpacking python3-build (1.2.2-1) ... 542s Selecting previously unselected package python3-installer. 542s Preparing to unpack .../124-python3-installer_0.7.0+dfsg1-3_all.deb ... 542s Unpacking python3-installer (0.7.0+dfsg1-3) ... 542s Selecting previously unselected package pybuild-plugin-pyproject. 542s Preparing to unpack .../125-pybuild-plugin-pyproject_6.20250308_all.deb ... 542s Unpacking pybuild-plugin-pyproject (6.20250308) ... 542s Selecting previously unselected package python-matplotlib-data. 542s Preparing to unpack .../126-python-matplotlib-data_3.8.3-7build1_all.deb ... 542s Unpacking python-matplotlib-data (3.8.3-7build1) ... 542s Selecting previously unselected package python-pybedtools-doc. 542s Preparing to unpack .../127-python-pybedtools-doc_0.10.0-4build1_all.deb ... 542s Unpacking python-pybedtools-doc (0.10.0-4build1) ... 542s Selecting previously unselected package python3-all. 542s Preparing to unpack .../128-python3-all_3.13.2-2_armhf.deb ... 542s Unpacking python3-all (3.13.2-2) ... 542s Selecting previously unselected package python3.13-dev. 542s Preparing to unpack .../129-python3.13-dev_3.13.2-2_armhf.deb ... 542s Unpacking python3.13-dev (3.13.2-2) ... 542s Selecting previously unselected package python3-dev. 542s Preparing to unpack .../130-python3-dev_3.13.2-2_armhf.deb ... 542s Unpacking python3-dev (3.13.2-2) ... 542s Selecting previously unselected package python3-all-dev. 542s Preparing to unpack .../131-python3-all-dev_3.13.2-2_armhf.deb ... 542s Unpacking python3-all-dev (3.13.2-2) ... 542s Selecting previously unselected package python3-brotli. 542s Preparing to unpack .../132-python3-brotli_1.1.0-2build4_armhf.deb ... 542s Unpacking python3-brotli (1.1.0-2build4) ... 542s Selecting previously unselected package python3-contourpy. 542s Preparing to unpack .../133-python3-contourpy_1.3.1-1build1_armhf.deb ... 542s Unpacking python3-contourpy (1.3.1-1build1) ... 542s Selecting previously unselected package python3-cycler. 542s Preparing to unpack .../134-python3-cycler_0.12.1-1_all.deb ... 542s Unpacking python3-cycler (0.12.1-1) ... 542s Selecting previously unselected package python3-decorator. 542s Preparing to unpack .../135-python3-decorator_5.1.1-5_all.deb ... 542s Unpacking python3-decorator (5.1.1-5) ... 542s Selecting previously unselected package python3-defusedxml. 543s Preparing to unpack .../136-python3-defusedxml_0.7.1-3_all.deb ... 543s Unpacking python3-defusedxml (0.7.1-3) ... 543s Selecting previously unselected package python3-roman. 543s Preparing to unpack .../137-python3-roman_5.0-1_all.deb ... 543s Unpacking python3-roman (5.0-1) ... 543s Selecting previously unselected package python3-docutils. 543s Preparing to unpack .../138-python3-docutils_0.21.2+dfsg-2_all.deb ... 543s Unpacking python3-docutils (0.21.2+dfsg-2) ... 543s Selecting previously unselected package python3-platformdirs. 543s Preparing to unpack .../139-python3-platformdirs_4.3.6-1_all.deb ... 543s Unpacking python3-platformdirs (4.3.6-1) ... 543s Selecting previously unselected package python3-fs. 543s Preparing to unpack .../140-python3-fs_2.4.16-7_all.deb ... 543s Unpacking python3-fs (2.4.16-7) ... 543s Selecting previously unselected package python3-lxml:armhf. 543s Preparing to unpack .../141-python3-lxml_5.3.1-1build1_armhf.deb ... 543s Unpacking python3-lxml:armhf (5.3.1-1build1) ... 543s Selecting previously unselected package python3-lz4. 543s Preparing to unpack .../142-python3-lz4_4.4.0+dfsg-1build1_armhf.deb ... 543s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ... 543s Selecting previously unselected package python3-scipy. 543s Preparing to unpack .../143-python3-scipy_1.14.1-4ubuntu2_armhf.deb ... 543s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 544s Selecting previously unselected package python3-mpmath. 544s Preparing to unpack .../144-python3-mpmath_1.3.0-1_all.deb ... 544s Unpacking python3-mpmath (1.3.0-1) ... 544s Selecting previously unselected package python3-sympy. 544s Preparing to unpack .../145-python3-sympy_1.13.3-5_all.deb ... 544s Unpacking python3-sympy (1.13.3-5) ... 544s Selecting previously unselected package python3-ufolib2. 544s Preparing to unpack .../146-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 544s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 544s Selecting previously unselected package unicode-data. 544s Preparing to unpack .../147-unicode-data_15.1.0-1_all.deb ... 544s Unpacking unicode-data (15.1.0-1) ... 544s Selecting previously unselected package python3-fonttools. 545s Preparing to unpack .../148-python3-fonttools_4.55.3-2build1_armhf.deb ... 545s Unpacking python3-fonttools (4.55.3-2build1) ... 545s Selecting previously unselected package python3-imagesize. 545s Preparing to unpack .../149-python3-imagesize_1.4.1-1_all.deb ... 545s Unpacking python3-imagesize (1.4.1-1) ... 545s Selecting previously unselected package python3-iniconfig. 545s Preparing to unpack .../150-python3-iniconfig_1.1.1-2_all.deb ... 545s Unpacking python3-iniconfig (1.1.1-2) ... 545s Selecting previously unselected package python3-kiwisolver. 545s Preparing to unpack .../151-python3-kiwisolver_1.4.7-3build1_armhf.deb ... 545s Unpacking python3-kiwisolver (1.4.7-3build1) ... 545s Selecting previously unselected package libopenjp2-7:armhf. 545s Preparing to unpack .../152-libopenjp2-7_2.5.3-2_armhf.deb ... 545s Unpacking libopenjp2-7:armhf (2.5.3-2) ... 545s Selecting previously unselected package python3-pil:armhf. 545s Preparing to unpack .../153-python3-pil_11.1.0-5build1_armhf.deb ... 545s Unpacking python3-pil:armhf (11.1.0-5build1) ... 545s Selecting previously unselected package python3.12-tk. 545s Preparing to unpack .../154-python3.12-tk_3.12.9-1_armhf.deb ... 545s Unpacking python3.12-tk (3.12.9-1) ... 545s Selecting previously unselected package python3.13-tk. 545s Preparing to unpack .../155-python3.13-tk_3.13.2-2_armhf.deb ... 545s Unpacking python3.13-tk (3.13.2-2) ... 545s Selecting previously unselected package python3-tk:armhf. 545s Preparing to unpack .../156-python3-tk_3.13.1-1_armhf.deb ... 545s Unpacking python3-tk:armhf (3.13.1-1) ... 545s Selecting previously unselected package python3-pil.imagetk:armhf. 545s Preparing to unpack .../157-python3-pil.imagetk_11.1.0-5build1_armhf.deb ... 545s Unpacking python3-pil.imagetk:armhf (11.1.0-5build1) ... 545s Selecting previously unselected package python3-matplotlib. 545s Preparing to unpack .../158-python3-matplotlib_3.8.3-7build1_armhf.deb ... 545s Unpacking python3-matplotlib (3.8.3-7build1) ... 546s Selecting previously unselected package sphinx-common. 546s Preparing to unpack .../159-sphinx-common_8.1.3-4_all.deb ... 546s Unpacking sphinx-common (8.1.3-4) ... 546s Selecting previously unselected package python3-alabaster. 546s Preparing to unpack .../160-python3-alabaster_0.7.16-0.1_all.deb ... 546s Unpacking python3-alabaster (0.7.16-0.1) ... 546s Selecting previously unselected package python3-snowballstemmer. 546s Preparing to unpack .../161-python3-snowballstemmer_2.2.0-4build1_all.deb ... 546s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 546s Selecting previously unselected package python3-sphinx. 546s Preparing to unpack .../162-python3-sphinx_8.1.3-4_all.deb ... 546s Unpacking python3-sphinx (8.1.3-4) ... 546s Selecting previously unselected package python3-tabulate. 546s Preparing to unpack .../163-python3-tabulate_0.9.0-1_all.deb ... 546s Unpacking python3-tabulate (0.9.0-1) ... 546s Selecting previously unselected package python3-numpydoc. 546s Preparing to unpack .../164-python3-numpydoc_1.8.0-1_all.deb ... 546s Unpacking python3-numpydoc (1.8.0-1) ... 546s Selecting previously unselected package python3-pytz. 546s Preparing to unpack .../165-python3-pytz_2025.1-3_all.deb ... 546s Unpacking python3-pytz (2025.1-3) ... 547s Selecting previously unselected package python3-tz. 547s Preparing to unpack .../166-python3-tz_2025.1-3_all.deb ... 547s Unpacking python3-tz (2025.1-3) ... 547s Selecting previously unselected package python3-pandas-lib:armhf. 547s Preparing to unpack .../167-python3-pandas-lib_2.2.3+dfsg-8build1_armhf.deb ... 547s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-8build1) ... 547s Selecting previously unselected package python3-pandas. 547s Preparing to unpack .../168-python3-pandas_2.2.3+dfsg-8build1_all.deb ... 547s Unpacking python3-pandas (2.2.3+dfsg-8build1) ... 547s Selecting previously unselected package python3-pluggy. 547s Preparing to unpack .../169-python3-pluggy_1.5.0-1_all.deb ... 547s Unpacking python3-pluggy (1.5.0-1) ... 547s Selecting previously unselected package python3-psutil. 547s Preparing to unpack .../170-python3-psutil_5.9.8-2build3_armhf.deb ... 547s Unpacking python3-psutil (5.9.8-2build3) ... 547s Selecting previously unselected package python3-pytest. 547s Preparing to unpack .../171-python3-pytest_8.3.5-1_all.deb ... 547s Unpacking python3-pytest (8.3.5-1) ... 547s Selecting previously unselected package zip. 547s Preparing to unpack .../172-zip_3.0-14ubuntu2_armhf.deb ... 547s Unpacking zip (3.0-14ubuntu2) ... 547s Selecting previously unselected package unzip. 547s Preparing to unpack .../173-unzip_6.0-28ubuntu6_armhf.deb ... 547s Unpacking unzip (6.0-28ubuntu6) ... 547s Selecting previously unselected package xdg-utils. 547s Preparing to unpack .../174-xdg-utils_1.2.1-2ubuntu1_all.deb ... 547s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 547s Selecting previously unselected package r-base-core. 548s Preparing to unpack .../175-r-base-core_4.4.3-1_armhf.deb ... 548s Unpacking r-base-core (4.4.3-1) ... 548s Setting up libpython3.13:armhf (3.13.2-2) ... 548s Setting up libhtscodecs2:armhf (1.6.1-2) ... 548s Setting up dh-python (6.20250308) ... 548s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 548s Setting up liblcms2-2:armhf (2.16-2) ... 548s Setting up python3-iniconfig (1.1.1-2) ... 548s Setting up libpixman-1-0:armhf (0.44.0-3) ... 548s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 548s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 548s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 548s Setting up libdatrie1:armhf (0.2.13-3build1) ... 548s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 548s Setting up libxcb-render0:armhf (1.17.0-2) ... 548s Setting up python3-defusedxml (0.7.1-3) ... 549s Setting up libarchive-zip-perl (1.68-1) ... 549s Setting up python3-alabaster (0.7.16-0.1) ... 549s Setting up fonts-lyx (2.4.3-1) ... 549s Setting up unzip (6.0-28ubuntu6) ... 549s Setting up libdebhelper-perl (13.24.1ubuntu2) ... 549s Setting up x11-common (1:7.7+23ubuntu3) ... 549s Setting up libdeflate0:armhf (1.23-1) ... 549s Setting up linux-libc-dev:armhf (6.14.0-10.10) ... 549s Setting up python3-tabulate (0.9.0-1) ... 549s Setting up m4 (1.4.19-7) ... 549s Setting up libqhull-r8.0:armhf (2020.2-6build1) ... 549s Setting up python3-all (3.13.2-2) ... 549s Setting up python3-pytz (2025.1-3) ... 550s Setting up libxcb-shm0:armhf (1.17.0-2) ... 550s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 550s Setting up python3-wheel (0.45.1-1) ... 550s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 550s Setting up python3-platformdirs (4.3.6-1) ... 550s Setting up python3-psutil (5.9.8-2build3) ... 550s Setting up python3-tz (2025.1-3) ... 550s Setting up libdw1t64:armhf (0.192-4) ... 550s Setting up python3-fs (2.4.16-7) ... 551s Setting up unicode-data (15.1.0-1) ... 551s Setting up python3-roman (5.0-1) ... 551s Setting up python3-decorator (5.1.1-5) ... 551s Setting up zip (3.0-14ubuntu2) ... 551s Setting up autotools-dev (20220109.1) ... 551s Setting up libblas3:armhf (3.12.1-2) ... 551s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 551s Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... 551s Setting up python3-pyproject-hooks (1.2.0-1) ... 551s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 551s Setting up python3-snowballstemmer (2.2.0-4build1) ... 552s Setting up python3-brotli (1.1.0-2build4) ... 552s Setting up python3-cycler (0.12.1-1) ... 552s Setting up libimagequant0:armhf (2.18.0-1build1) ... 552s Setting up fonts-dejavu-mono (2.37-8) ... 552s Setting up python3-kiwisolver (1.4.7-3build1) ... 552s Setting up libmpc3:armhf (1.3.1-1build2) ... 552s Setting up python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 552s Setting up cython3 (3.0.11+dfsg-2ubuntu2) ... 553s Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... 553s Setting up autopoint (0.23.1-1) ... 553s Setting up fonts-dejavu-core (2.37-8) ... 553s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 553s Setting up python3-toml (0.10.2-1) ... 553s Setting up python3-installer (0.7.0+dfsg1-3) ... 553s Setting up libgfortran5:armhf (15-20250222-0ubuntu1) ... 553s Setting up autoconf (2.72-3ubuntu1) ... 553s Setting up python3-pluggy (1.5.0-1) ... 553s Setting up libwebp7:armhf (1.5.0-0.1) ... 553s Setting up libubsan1:armhf (15-20250222-0ubuntu1) ... 553s Setting up dwz (0.15-1build6) ... 553s Setting up libcrypt-dev:armhf (1:4.4.38-1) ... 553s Setting up libasan8:armhf (15-20250222-0ubuntu1) ... 553s Setting up libjson-perl (4.10000-1) ... 553s Setting up libxslt1.1:armhf (1.1.39-0exp1ubuntu2) ... 553s Setting up debugedit (1:5.1-2) ... 553s Setting up libhts3t64:armhf (1.21+ds-1) ... 553s Setting up libopenjp2-7:armhf (2.5.3-2) ... 553s Setting up libharfbuzz0b:armhf (10.2.0-1) ... 553s Setting up libthai-data (0.1.29-2build1) ... 553s Setting up sgml-base (1.31) ... 554s Setting up libxss1:armhf (1:1.2.3-1build3) ... 554s Setting up libpaper2:armhf (2.2.5-0.3) ... 554s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 554s Setting up libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 554s Setting up python3-mpmath (1.3.0-1) ... 554s Setting up libisl23:armhf (0.27-1) ... 554s Setting up python3-build (1.2.2-1) ... 554s Setting up libc-dev-bin (2.41-1ubuntu2) ... 554s Setting up python-matplotlib-data (3.8.3-7build1) ... 554s Setting up libwebpmux3:armhf (1.5.0-0.1) ... 554s Setting up xdg-utils (1.2.1-2ubuntu1) ... 554s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 554s Setting up bedtools (2.31.1+dfsg-2) ... 554s Setting up libcc1-0:armhf (15-20250222-0ubuntu1) ... 554s Setting up cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 554s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 554s Setting up python3-imagesize (1.4.1-1) ... 555s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 555s Setting up automake (1:1.17-3ubuntu1) ... 555s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 555s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 555s Setting up python3-sympy (1.13.3-5) ... 562s Setting up libice6:armhf (2:1.1.1-1) ... 562s Setting up liblapack3:armhf (3.12.1-2) ... 562s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 562s Setting up gettext (0.23.1-1) ... 562s Setting up python3-pysam (0.23.0+ds-1build1) ... 562s Setting up pybuild-plugin-pyproject (6.20250308) ... 562s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 562s Setting up python3-pytest (8.3.5-1) ... 563s Setting up libwebpdemux2:armhf (1.5.0-0.1) ... 563s Setting up gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 563s Setting up libpaper-utils (2.2.5-0.3) ... 563s Setting up intltool-debian (0.35.0+20060710.6) ... 563s Setting up libthai0:armhf (0.1.29-2build1) ... 563s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 563s Setting up libraqm0:armhf (0.10.2-1) ... 563s Setting up python3-numpy (1:2.2.3+ds-5) ... 565s Setting up libjs-sphinxdoc (8.1.3-4) ... 565s Setting up cpp-14 (14.2.0-17ubuntu3) ... 565s Setting up dh-strip-nondeterminism (1.14.1-2) ... 565s Setting up python3-lxml:armhf (5.3.1-1build1) ... 565s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 565s Setting up xml-core (0.19) ... 566s Setting up libc6-dev:armhf (2.41-1ubuntu2) ... 566s Setting up python3-contourpy (1.3.1-1build1) ... 566s Setting up libfontconfig1:armhf (2.15.0-2ubuntu1) ... 566s Setting up libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 566s Setting up libsm6:armhf (2:1.2.4-1) ... 566s Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 566s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 566s Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 566s Setting up g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 566s Setting up fontconfig (2.15.0-2ubuntu1) ... 568s Regenerating fonts cache... done. 568s Setting up python3-pybedtools (0.10.0-4build1) ... 568s Setting up libxft2:armhf (2.3.6-1build1) ... 568s Setting up python3-scipy (1.14.1-4ubuntu2) ... 572s Setting up python-pybedtools-doc (0.10.0-4build1) ... 572s Setting up po-debconf (1.0.21+nmu1) ... 572s Setting up libtk8.6:armhf (8.6.16-1) ... 572s Setting up python3-pandas-lib:armhf (2.2.3+dfsg-8build1) ... 572s Setting up libpango-1.0-0:armhf (1.56.2-1) ... 572s Setting up python3.12-tk (3.12.9-1) ... 572s Setting up pybedtools-bin (0.10.0-4build1) ... 572s Setting up libcairo2:armhf (1.18.2-2) ... 572s Setting up python3.13-tk (3.13.2-2) ... 573s Setting up gcc-14 (14.2.0-17ubuntu3) ... 573s Setting up python3-pil:armhf (11.1.0-5build1) ... 573s Setting up libexpat1-dev:armhf (2.6.4-1) ... 573s Setting up python3-pandas (2.2.3+dfsg-8build1) ... 579s Setting up sphinx-common (8.1.3-4) ... 579s Setting up libxt6t64:armhf (1:1.2.1-1.2build1) ... 579s Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 579s Setting up cpp (4:14.2.0-1ubuntu1) ... 579s Setting up g++-14 (14.2.0-17ubuntu3) ... 579s Setting up libpangoft2-1.0-0:armhf (1.56.2-1) ... 579s Setting up libpangocairo-1.0-0:armhf (1.56.2-1) ... 579s Setting up g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 579s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 579s Setting up libtool (2.5.4-4) ... 579s Setting up blt (2.5.3+dfsg-8) ... 579s Setting up python3-tk:armhf (3.13.1-1) ... 579s Setting up gcc (4:14.2.0-1ubuntu1) ... 579s Setting up dh-autoreconf (20) ... 579s Setting up python3-pil.imagetk:armhf (11.1.0-5build1) ... 579s Setting up libpython3.13-dev:armhf (3.13.2-2) ... 579s Setting up r-base-core (4.4.3-1) ... 579s Creating config file /etc/R/Renviron with new version 579s Setting up g++ (4:14.2.0-1ubuntu1) ... 579s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 579s Setting up build-essential (12.10ubuntu1) ... 579s Setting up libpython3-dev:armhf (3.13.2-2) ... 579s Setting up python3.13-dev (3.13.2-2) ... 579s Setting up debhelper (13.24.1ubuntu2) ... 579s Setting up libpython3-all-dev:armhf (3.13.2-2) ... 579s Setting up python3-dev (3.13.2-2) ... 579s Setting up python3-all-dev (3.13.2-2) ... 579s Setting up pybuild-plugin-autopkgtest (6.20250308) ... 579s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 580s Setting up python3-fonttools (4.55.3-2build1) ... 581s Setting up python3-matplotlib (3.8.3-7build1) ... 583s Processing triggers for libc-bin (2.41-1ubuntu2) ... 583s Processing triggers for man-db (2.13.0-1) ... 585s Processing triggers for install-info (7.1.1-1) ... 585s Processing triggers for sgml-base (1.31) ... 585s Setting up docutils-common (0.21.2+dfsg-2) ... 585s Processing triggers for sgml-base (1.31) ... 585s Setting up python3-docutils (0.21.2+dfsg-2) ... 585s Setting up python3-sphinx (8.1.3-4) ... 586s Setting up python3-numpydoc (1.8.0-1) ... 598s autopkgtest [15:58:44]: test pybuild-autopkgtest: pybuild-autopkgtest 598s autopkgtest [15:58:44]: test pybuild-autopkgtest: [----------------------- 600s pybuild-autopkgtest 601s I: pybuild base:311: cd /tmp/autopkgtest.RGmrAZ/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_chromsizes" --pyargs pybedtools 602s ============================= test session starts ============================== 602s platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 602s rootdir: /tmp/autopkgtest.RGmrAZ/autopkgtest_tmp/build 602s configfile: pyproject.toml 602s plugins: typeguard-4.4.2 602s collected 511 items / 2 deselected / 509 selected 602s 608s test/test_1.py ......................................................... [ 11%] 609s ............x..x.x...... [ 15%] 609s test/test_cbedtools.py ....................................... [ 23%] 610s test/test_contrib.py .. [ 23%] 610s test/test_gzip_support.py ........ [ 25%] 610s test/test_helpers.py ...... [ 26%] 613s test/test_issues.py ........................................... [ 35%] 613s test/test_iter.py ...................................................... [ 45%] 614s ........................................................................ [ 59%] 619s ........................................................................ [ 74%] 619s ........................................................................ [ 88%] 620s ......................................................... [ 99%] 620s test/test_pathlib.py ... [100%] 620s 620s ================ 506 passed, 2 deselected, 3 xfailed in 18.40s ================= 620s I: pybuild pybuild:334: cd /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs ; PYTHONPATH=/tmp/autopkgtest.RGmrAZ/autopkgtest_tmp/build python3.13 -m sphinx -b doctest -d build/doctrees source build/doctest 620s Running Sphinx v8.1.3 620s loading translations [en]... done 621s making output directory... done 621s Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. 621s [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, autodocs/pybedtools.contrib.plotting.Track.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst 623s [autosummary] generating autosummary for: /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.helpers.set_tempdir.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/autodocs/pybedtools.parallel.parallel_apply.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/pybedtools.featurefuncs.add_color.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/pybedtools.featurefuncs.extend_fields.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/pybedtools.featurefuncs.five_prime.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/pybedtools.featurefuncs.greater_than.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/pybedtools.featurefuncs.less_than.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/pybedtools.featurefuncs.three_prime.rst 623s building [mo]: targets for 0 po files that are out of date 623s writing output... 623s building [doctest]: targets for 49 source files that are out of date 623s updating environment: [new config] 157 added, 0 changed, 0 removed 623s reading sources... [ 1%] 3-brief-examples 623s reading sources... [ 1%] FAQs 623s reading sources... [ 2%] autodoc_source 624s /usr/lib/python3/dist-packages/numpydoc/docscrape.py:421: UserWarning: Unknown section Example in the docstring of decorated in /usr/lib/python3/dist-packages/pybedtools/bedtool.py. 624s self[section] = content 624s /usr/lib/python3/dist-packages/numpydoc/docscrape.py:421: UserWarning: Unknown section Example in the docstring of tag_bedpe in /usr/lib/python3/dist-packages/pybedtools/contrib/long_range_interaction.py. 624s self[section] = content 624s reading sources... [ 3%] autodocs/pybedtools.bedtool.BedTool 625s /usr/lib/python3/dist-packages/numpydoc/docscrape.py:421: UserWarning: Unknown section Example in the docstring of decorated in /usr/lib/python3/dist-packages/pybedtools/bedtool.py. 625s self[section] = content 626s reading sources... [ 3%] autodocs/pybedtools.bedtool.BedTool.absolute_distance 626s reading sources... 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[ 93%] topical-bam-semantics 631s reading sources... [ 94%] topical-comparisons 631s reading sources... [ 94%] topical-create-a-bedtool 631s reading sources... [ 95%] topical-design-principles 631s reading sources... [ 96%] topical-documentation-contents 631s reading sources... [ 96%] topical-genome 631s reading sources... [ 97%] topical-iterators 631s reading sources... [ 97%] topical-low-level-ops 631s reading sources... [ 98%] topical-random 631s reading sources... [ 99%] topical-saving 631s reading sources... [ 99%] topical-wrapping 631s reading sources... [100%] tutorial-contents 631s 631s looking for now-outdated files... none found 631s pickling environment... WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool' with 'bedtool.BedTool'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.intersect' with 'bedtool.BedTool.intersect'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.window' with 'bedtool.BedTool.window'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.closest' with 'bedtool.BedTool.closest'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.coverage' with 'bedtool.BedTool.coverage'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.map' with 'bedtool.BedTool.map'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.genome_coverage' with 'bedtool.BedTool.genome_coverage'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. 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[autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.sort' with 'bedtool.BedTool.sort'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.random' with 'bedtool.BedTool.random'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.shuffle' with 'bedtool.BedTool.shuffle'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.annotate' with 'bedtool.BedTool.annotate'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.multi_intersect' with 'bedtool.BedTool.multi_intersect'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. 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[autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.bed6' with 'bedtool.BedTool.bed6'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.bam_to_fastq' with 'bedtool.BedTool.bam_to_fastq'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.sequence' with 'bedtool.BedTool.sequence'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.mask_fasta' with 'bedtool.BedTool.mask_fasta'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.nucleotide_content' with 'bedtool.BedTool.nucleotide_content'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.multi_bam_coverage' with 'bedtool.BedTool.multi_bam_coverage'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.tag_bam' with 'bedtool.BedTool.tag_bam'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.jaccard' with 'bedtool.BedTool.jaccard'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.reldist' with 'bedtool.BedTool.reldist'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. Replace 'pybedtools.bedtool.BedTool.overlap' with 'bedtool.BedTool.overlap'. [autosummary.import_cycle] 631s WARNING: Summarised items should not include the current module. 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[autosummary.import_cycle] 631s done 631s checking consistency... /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/pybedtools.featurefuncs.normalized_to_length.rst: document is referenced in multiple toctrees: ['autodoc_source', 'autodoc_source'], selecting: autodoc_source <- pybedtools.featurefuncs.normalized_to_length 631s /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/pybedtools.featurefuncs.rename.rst: document is referenced in multiple toctrees: ['autodoc_source', 'autodoc_source'], selecting: autodoc_source <- pybedtools.featurefuncs.rename 631s done 631s preparing documents... done 631s copying assets... 631s copying assets: done 631s running tests... 631s 631s Document: autodocs/pybedtools.bedtool.BedTool.annotate 631s ------------------------------------------------------ 631s 1 item passed all tests: 631s 3 tests in default 631s 3 tests in 1 item. 631s 3 passed. 631s Test passed. 631s 631s Document: autodocs/pybedtools.bedtool.BedTool.cat 631s ------------------------------------------------- 631s WARNING: Summarised items should not include the current module. 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[autosummary.import_cycle] 631s /tmp/autopkgtest.RGmrAZ/build.6rH/src/docs/source/topical-genome.rst:55: ERROR: Unknown target name: "genomepy". 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autodocs/pybedtools.contrib.plotting.Track 636s ---------------------------------------------------- 636s 1 item passed all tests: 636s 7 tests in default 636s 7 tests in 1 item. 636s 7 passed. 636s Test passed. 636s 636s Document: autodocs/pybedtools.filenames.list_example_files 636s ---------------------------------------------------------- 636s 1 item passed all tests: 636s 5 tests in default 636s 5 tests in 1 item. 636s 5 passed. 636s Test passed. 636s 636s Document: autodocs/pybedtools.helpers.chromsizes 636s ------------------------------------------------ 636s 1 item passed all tests: 636s 2 tests in default 636s 2 tests in 1 item. 636s 2 passed. 636s Test passed. 636s 636s Document: autodocs/pybedtools.parallel.parallel_apply 636s ----------------------------------------------------- 636s 1 item passed all tests: 636s 13 tests in default 636s 13 tests in 1 item. 636s 13 passed. 636s Test passed. 636s 636s Document: default-arguments 636s --------------------------- 636s 1 item passed all tests: 636s 13 tests in default 636s 13 tests in 1 item. 636s 13 passed. 636s Test passed. 636s 636s Document: each 636s -------------- 636s 1 item passed all tests: 636s 6 tests in default 636s 6 tests in 1 item. 636s 6 passed. 636s Test passed. 636s 636s Document: filtering 636s ------------------- 636s 1 item passed all tests: 636s 8 tests in default 636s 8 tests in 1 item. 636s 8 passed. 636s Test passed. 636s 636s Document: history 636s ----------------- 636s 1 item passed all tests: 636s 10 tests in default 636s 10 tests in 1 item. 636s 10 passed. 636s Test passed. 636s 636s Document: intersections 636s ----------------------- 636s 1 item passed all tests: 636s 8 tests in default 636s 8 tests in 1 item. 636s 8 passed. 636s Test passed. 636s 636s Document: intervals 636s ------------------- 636s 1 item passed all tests: 636s 50 tests in default 636s 50 tests in 1 item. 636s 50 passed. 636s Test passed. 636s 636s Document: piping 636s ---------------- 636s 1 item passed all tests: 636s 17 tests in default 636s 17 tests in 1 item. 636s 17 passed. 636s Test passed. 636s 636s Document: save-results 636s ---------------------- 636s 1 item passed all tests: 636s 8 tests in default 636s 8 tests in 1 item. 636s 8 passed. 636s Test passed. 636s 636s Document: topical-bam 636s --------------------- 638s 1 item passed all tests: 638s 15 tests in default 638s 15 tests in 1 item. 638s 15 passed. 638s Test passed. 638s 638s Document: topical-create-a-bedtool 638s ---------------------------------- 638s 1 item passed all tests: 638s 10 tests in default 638s 10 tests in 1 item. 638s 10 passed. 638s Test passed. 638s 638s Document: topical-design-principles 638s ----------------------------------- 638s 1 item passed all tests: 638s 15 tests in default 638s 15 tests in 1 item. 638s 15 passed. 638s Test passed. 638s 638s Document: topical-genome 638s ------------------------ 638s 1 item passed all tests: 638s 13 tests in default 638s 13 tests in 1 item. 638s 13 passed. 638s Test passed. 638s 638s Document: topical-iterators 638s --------------------------- 638s 1 item passed all tests: 638s 20 tests in default 638s 20 tests in 1 item. 638s 20 passed. 638s Test passed. 638s 638s Document: topical-low-level-ops 638s ------------------------------- 638s 1 item passed all tests: 638s 6 tests in default 638s 6 tests in 1 item. 638s 6 passed. 638s Test passed. 638s 638s Document: topical-random 638s ------------------------ 640s 1 item passed all tests: 640s 10 tests in default 640s 10 tests in 1 item. 640s 10 passed. 640s Test passed. 640s 640s Document: topical-saving 640s ------------------------ 640s 1 item passed all tests: 640s 14 tests in default 640s 14 tests in 1 item. 640s 14 passed. 640s Test passed. 640s 640s Doctest summary 640s =============== 640s 387 tests 640s 0 failures in tests 640s 0 failures in setup code 640s 0 failures in cleanup code 640s build succeeded, 126 warnings. 640s 640s Testing of doctests in the sources finished, look at the results in build/doctest/output.txt. 641s autopkgtest [15:59:27]: test pybuild-autopkgtest: -----------------------] 645s pybuild-autopkgtest PASS 645s autopkgtest [15:59:31]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 649s autopkgtest [15:59:35]: @@@@@@@@@@@@@@@@@@@@ summary 649s pybuild-autopkgtest PASS