0s autopkgtest [20:23:31]: starting date and time: 2024-11-15 20:23:31+0000 0s autopkgtest [20:23:31]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [20:23:31]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3sj023_n/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:scikit-learn --apt-upgrade python-pot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-6build1 -- lxd -r lxd-armhf-10.145.243.141 lxd-armhf-10.145.243.141:autopkgtest/ubuntu/plucky/armhf 52s autopkgtest [20:24:23]: testbed dpkg architecture: armhf 54s autopkgtest [20:24:25]: testbed apt version: 2.9.8 54s autopkgtest [20:24:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 62s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 62s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 62s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1043 kB] 62s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [92.2 kB] 62s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [143 kB] 62s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [747 kB] 62s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4428 B] 63s Fetched 2126 kB in 1s (2220 kB/s) 63s Reading package lists... 79s tee: /proc/self/fd/2: Permission denied 101s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 101s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 101s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 101s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 102s Reading package lists... 102s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade... 104s The following NEW packages will be installed: 104s libassuan9 104s The following packages will be upgraded: 104s libgpgme11t64 libseccomp2 python3-cffi-backend python3-markupsafe 104s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 297 kB of archives. 104s After this operation, 224 kB of additional disk space will be used. 104s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libseccomp2 armhf 2.5.5-1ubuntu5 [49.3 kB] 104s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2build1 [75.9 kB] 104s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libassuan9 armhf 3.0.1-2 [34.3 kB] 104s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.24.0-2ubuntu1 [125 kB] 104s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-markupsafe armhf 2.1.5-1build3 [12.5 kB] 105s Fetched 297 kB in 0s (630 kB/s) 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 105s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu5_armhf.deb ... 105s Unpacking libseccomp2:armhf (2.5.5-1ubuntu5) over (2.5.5-1ubuntu4) ... 105s Setting up libseccomp2:armhf (2.5.5-1ubuntu5) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 105s Preparing to unpack .../python3-cffi-backend_1.17.1-2build1_armhf.deb ... 105s Unpacking python3-cffi-backend:armhf (1.17.1-2build1) over (1.17.1-2) ... 105s Selecting previously unselected package libassuan9:armhf. 105s Preparing to unpack .../libassuan9_3.0.1-2_armhf.deb ... 105s Unpacking libassuan9:armhf (3.0.1-2) ... 105s Preparing to unpack .../libgpgme11t64_1.24.0-2ubuntu1_armhf.deb ... 105s Unpacking libgpgme11t64:armhf (1.24.0-2ubuntu1) over (1.23.2-5ubuntu4) ... 105s Preparing to unpack .../python3-markupsafe_2.1.5-1build3_armhf.deb ... 105s Unpacking python3-markupsafe (2.1.5-1build3) over (2.1.5-1build2) ... 105s Setting up python3-markupsafe (2.1.5-1build3) ... 105s Setting up libassuan9:armhf (3.0.1-2) ... 105s Setting up libgpgme11t64:armhf (1.24.0-2ubuntu1) ... 105s Setting up python3-cffi-backend:armhf (1.17.1-2build1) ... 105s Processing triggers for libc-bin (2.40-1ubuntu3) ... 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s autopkgtest [20:25:20]: rebooting testbed after setup commands that affected boot 175s autopkgtest [20:26:26]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 201s autopkgtest [20:26:52]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pot 211s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (dsc) [2114 B] 211s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (tar) [775 kB] 211s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pot 0.9.4+dfsg-1 (diff) [5972 B] 211s gpgv: Signature made Fri Jul 26 13:27:39 2024 UTC 211s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 211s gpgv: issuer "gspr@nonempty.org" 211s gpgv: Can't check signature: No public key 211s dpkg-source: warning: cannot verify inline signature for ./python-pot_0.9.4+dfsg-1.dsc: no acceptable signature found 211s autopkgtest [20:27:02]: testing package python-pot version 0.9.4+dfsg-1 213s autopkgtest [20:27:04]: build not needed 215s autopkgtest [20:27:06]: test upstream.sh: preparing testbed 226s Reading package lists... 226s Building dependency tree... 226s Reading state information... 226s Starting pkgProblemResolver with broken count: 0 226s Starting 2 pkgProblemResolver with broken count: 0 226s Done 227s The following additional packages will be installed: 227s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 python3-all 227s python3-decorator python3-iniconfig python3-joblib python3-numpy 227s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 227s python3-sklearn python3-sklearn-lib python3-threadpoolctl 227s Suggested packages: 227s python-joblib-doc gcc gfortran python-numpy-doc python3-dev python-scipy-doc 227s python3-dap python-sklearn-doc ipython3 227s Recommended packages: 227s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 227s python3-matplotlib 227s The following NEW packages will be installed: 227s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 227s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 227s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 227s python3-sklearn python3-sklearn-lib python3-threadpoolctl 227s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 227s Need to get 32.0 MB/32.0 MB of archives. 227s After this operation, 123 MB of additional disk space will be used. 227s Get:1 /tmp/autopkgtest.OuIdSh/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [724 B] 228s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 228s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 228s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 228s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 228s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 228s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.12.6-0ubuntu1 [886 B] 228s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 228s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 228s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-joblib all 1.3.2-5 [206 kB] 228s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 228s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 228s Get:13 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 228s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 229s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pot armhf 0.9.4+dfsg-1 [220 kB] 229s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB] 229s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-threadpoolctl all 3.1.0-1 [21.3 kB] 229s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-sklearn-lib armhf 1.4.2+dfsg-6build1 [6321 kB] 229s Get:19 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-sklearn all 1.4.2+dfsg-6build1 [2257 kB] 230s Fetched 32.0 MB in 2s (16.4 MB/s) 230s Selecting previously unselected package libblas3:armhf. 230s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59573 files and directories currently installed.) 230s Preparing to unpack .../00-libblas3_3.12.0-3build2_armhf.deb ... 230s Unpacking libblas3:armhf (3.12.0-3build2) ... 230s Selecting previously unselected package libgfortran5:armhf. 230s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 230s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 230s Selecting previously unselected package libgomp1:armhf. 230s Preparing to unpack .../02-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 230s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 230s Selecting previously unselected package liblapack3:armhf. 230s Preparing to unpack .../03-liblapack3_3.12.0-3build2_armhf.deb ... 230s Unpacking liblapack3:armhf (3.12.0-3build2) ... 230s Selecting previously unselected package liblbfgsb0:armhf. 230s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 230s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 230s Selecting previously unselected package python3-all. 230s Preparing to unpack .../05-python3-all_3.12.6-0ubuntu1_armhf.deb ... 230s Unpacking python3-all (3.12.6-0ubuntu1) ... 230s Selecting previously unselected package python3-decorator. 230s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 230s Unpacking python3-decorator (5.1.1-5) ... 230s Selecting previously unselected package python3-iniconfig. 230s Preparing to unpack .../07-python3-iniconfig_1.1.1-2_all.deb ... 230s Unpacking python3-iniconfig (1.1.1-2) ... 230s Selecting previously unselected package python3-joblib. 230s Preparing to unpack .../08-python3-joblib_1.3.2-5_all.deb ... 230s Unpacking python3-joblib (1.3.2-5) ... 230s Selecting previously unselected package python3-numpy. 230s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 230s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 230s Selecting previously unselected package python3-packaging. 230s Preparing to unpack .../10-python3-packaging_24.1-1_all.deb ... 230s Unpacking python3-packaging (24.1-1) ... 230s Selecting previously unselected package python3-pluggy. 230s Preparing to unpack .../11-python3-pluggy_1.5.0-1_all.deb ... 230s Unpacking python3-pluggy (1.5.0-1) ... 230s Selecting previously unselected package python3-scipy. 231s Preparing to unpack .../12-python3-scipy_1.13.1-5_armhf.deb ... 231s Unpacking python3-scipy (1.13.1-5) ... 231s Selecting previously unselected package python3-pot. 231s Preparing to unpack .../13-python3-pot_0.9.4+dfsg-1_armhf.deb ... 231s Unpacking python3-pot (0.9.4+dfsg-1) ... 231s Selecting previously unselected package python3-pytest. 231s Preparing to unpack .../14-python3-pytest_8.3.3-1_all.deb ... 231s Unpacking python3-pytest (8.3.3-1) ... 231s Selecting previously unselected package python3-threadpoolctl. 231s Preparing to unpack .../15-python3-threadpoolctl_3.1.0-1_all.deb ... 231s Unpacking python3-threadpoolctl (3.1.0-1) ... 231s Selecting previously unselected package python3-sklearn-lib:armhf. 231s Preparing to unpack .../16-python3-sklearn-lib_1.4.2+dfsg-6build1_armhf.deb ... 231s Unpacking python3-sklearn-lib:armhf (1.4.2+dfsg-6build1) ... 231s Selecting previously unselected package python3-sklearn. 231s Preparing to unpack .../17-python3-sklearn_1.4.2+dfsg-6build1_all.deb ... 231s Unpacking python3-sklearn (1.4.2+dfsg-6build1) ... 231s Selecting previously unselected package autopkgtest-satdep. 232s Preparing to unpack .../18-1-autopkgtest-satdep.deb ... 232s Unpacking autopkgtest-satdep (0) ... 232s Setting up python3-iniconfig (1.1.1-2) ... 232s Setting up python3-joblib (1.3.2-5) ... 232s Setting up python3-threadpoolctl (3.1.0-1) ... 232s Setting up python3-all (3.12.6-0ubuntu1) ... 232s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 232s Setting up python3-decorator (5.1.1-5) ... 232s Setting up libblas3:armhf (3.12.0-3build2) ... 232s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 232s Setting up python3-packaging (24.1-1) ... 232s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 232s Setting up python3-pluggy (1.5.0-1) ... 233s Setting up liblapack3:armhf (3.12.0-3build2) ... 233s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 233s Setting up python3-pytest (8.3.3-1) ... 233s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 236s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 236s Setting up python3-scipy (1.13.1-5) ... 240s Setting up python3-pot (0.9.4+dfsg-1) ... 240s Setting up python3-sklearn-lib:armhf (1.4.2+dfsg-6build1) ... 240s Setting up python3-sklearn (1.4.2+dfsg-6build1) ... 243s Setting up autopkgtest-satdep (0) ... 243s Processing triggers for man-db (2.13.0-1) ... 243s Processing triggers for libc-bin (2.40-1ubuntu3) ... 254s (Reading database ... 63255 files and directories currently installed.) 254s Removing autopkgtest-satdep (0) ... 260s autopkgtest [20:27:51]: test upstream.sh: [----------------------- 262s Running tests with Python 3.12. 264s ============================= test session starts ============================== 264s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 264s rootdir: /tmp/autopkgtest.OuIdSh/autopkgtest_tmp 264s plugins: typeguard-4.4.1 264s collected 615 items 264s 271s test/gromov/test_bregman.py ..x..x............ [ 2%] 272s test/gromov/test_dictionary.py .... [ 3%] 273s test/gromov/test_estimators.py .. [ 3%] 273s test/gromov/test_gw.py ....s....x....... [ 6%] 274s test/gromov/test_lowrank.py .......... [ 8%] 274s test/gromov/test_quantized.py .... [ 8%] 275s test/gromov/test_semirelaxed.py .....x....... [ 11%] 275s test/test_1d_solver.py ...s..s...... [ 13%] 275s test/test_backend.py .......... [ 14%] 280s test/test_bregman.py ......................................sss.......... [ 23%] 287s .....................................ss....ss..ss..s....... [ 32%] 288s test/test_coot.py ......... [ 34%] 290s test/test_da.py .....................s... [ 38%] 290s test/test_dmmot.py .. [ 38%] 290s test/test_dr.py ssssss [ 39%] 291s test/test_factored.py .. [ 39%] 298s test/test_gaussian.py .................. [ 42%] 298s test/test_gnn.py ssss [ 43%] 302s test/test_lowrank.py ........... [ 45%] 302s test/test_mapping.py sss. [ 45%] 305s test/test_optim.py ...... [ 46%] 306s test/test_ot.py ....s..........s.. [ 49%] 308s test/test_partial.py ...... [ 50%] 308s test/test_plot.py ss [ 51%] 310s test/test_regpath.py .. [ 51%] 310s test/test_sliced.py ...........s..s............. [ 55%] 311s test/test_smooth.py ... [ 56%] 315s test/test_solvers.py .s................................................. [ 64%] 316s .........................ssssssss........ssssssss....................... [ 76%] 321s .ssssssss........ssssssss...ss............. [ 83%] 324s test/test_stochastic.py ......... [ 84%] 327s test/test_unbalanced.py ................................................ [ 92%] 345s ................ [ 95%] 345s test/test_utils.py ........................... [ 99%] 346s test/test_weak.py .. [100%] 346s 346s =============================== warnings summary =============================== 346s test/gromov/test_bregman.py: 12 warnings 346s test/gromov/test_estimators.py: 1 warning 346s test/test_bregman.py: 6 warnings 346s test/test_coot.py: 1 warning 346s test/test_da.py: 4 warnings 346s test/test_optim.py: 1 warning 346s test/test_partial.py: 1 warning 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:531: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 346s warnings.warn("Sinkhorn did not converge. You might want to " 346s 346s test/gromov/test_bregman.py::test_BAPG_gromov[numpy] 346s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:507: RuntimeWarning: divide by zero encountered in divide 346s column_scaling = q / nx.sum(T, 0) 346s 346s test/gromov/test_bregman.py::test_BAPG_gromov[numpy] 346s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:508: RuntimeWarning: invalid value encountered in multiply 346s T = nx.reshape(column_scaling, (1, -1)) * T 346s 346s test/gromov/test_bregman.py::test_BAPG_fgw[numpy] 346s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1357: RuntimeWarning: divide by zero encountered in divide 346s row_scaling = p / nx.sum(T, 1) 346s 346s test/gromov/test_bregman.py::test_BAPG_fgw[numpy] 346s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1358: RuntimeWarning: invalid value encountered in multiply 346s T = nx.reshape(row_scaling, (-1, 1)) * T 346s 346s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 346s /usr/lib/python3/dist-packages/ot/backend.py:1153: RuntimeWarning: divide by zero encountered in log 346s return np.log(a) 346s 346s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: divide by zero encountered in divide 346s v = b / KtransposeU 346s 346s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: overflow encountered in divide 346s v = b / KtransposeU 346s 346s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 346s test/gromov/test_bregman.py::test_gromov_entropic_barycenter[numpy] 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:506: UserWarning: Warning: numerical errors at iteration 0 346s warnings.warn('Warning: numerical errors at iteration %d' % ii) 346s 346s test/gromov/test_bregman.py::test_entropic_fgw_barycenter[numpy] 346s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1050: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 346s warnings.warn("Solver failed to produce a transport plan. You might " 346s 346s test/gromov/test_bregman.py::test_gromov_entropic_barycenter[numpy] 346s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:218: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 346s warnings.warn("Solver failed to produce a transport plan. You might " 346s 346s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 346s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 346s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 346s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 346s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:222: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 346s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 346s 346s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 346s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 346s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 346s test/gromov/test_estimators.py::test_pointwise_gromov[numpy] 346s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:223: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 346s index[1] = generator.choice(len_q, size=1, p=nx.to_numpy(q)) 346s 346s test/gromov/test_estimators.py: 400 warnings 346s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:228: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 346s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 346s 346s test/gromov/test_estimators.py: 400 warnings 346s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:230: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 346s index[1] = generator.choice( 346s 346s test/gromov/test_gw.py::test_gromov_integer_warnings[numpy] 346s /tmp/autopkgtest.OuIdSh/autopkgtest_tmp/test/gromov/test_gw.py:144: UserWarning: Input structure matrix consists of integers. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 346s G = ot.gromov.gromov_wasserstein( 346s 346s test/gromov/test_gw.py::test_gromov_integer_warnings[numpy] 346s /tmp/autopkgtest.OuIdSh/autopkgtest_tmp/test/gromov/test_gw.py:147: UserWarning: Input structure matrix consists of integers. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 346s Gb = nx.to_numpy(ot.gromov.gromov_wasserstein( 346s 346s test/gromov/test_gw.py::test_fgw_integer_warnings[numpy] 346s /tmp/autopkgtest.OuIdSh/autopkgtest_tmp/test/gromov/test_gw.py:641: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 346s G, log = ot.gromov.fused_gromov_wasserstein( 346s 346s test/gromov/test_gw.py::test_fgw_integer_warnings[numpy] 346s /tmp/autopkgtest.OuIdSh/autopkgtest_tmp/test/gromov/test_gw.py:644: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 346s Gb, logb = ot.gromov.fused_gromov_wasserstein( 346s 346s test/gromov/test_lowrank.py::test_lowrank_gromov_wasserstein_samples 346s test/gromov/test_lowrank.py::test_lowrank_wasserstein_samples_gamma_init[theory] 346s /usr/lib/python3/dist-packages/ot/gromov/_lowrank.py:270: UserWarning: Low Rank GW did not converge. You might want to increase the number of iterations `numItermax` 346s warnings.warn( 346s 346s test/gromov/test_quantized.py::test_quantized_gw[numpy] 346s test/gromov/test_quantized.py::test_quantized_gw[numpy] 346s /usr/lib/python3/dist-packages/ot/gromov/_quantized.py:699: UserWarning: Requested number of partitions higher than the number of nodeshence we enforce each node to be a partition. 346s part1 = get_graph_partition(C1_aux, npart1, part_method, F1, alpha, random_state, nx) 346s 346s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 346s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 346s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 346s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 346s test/gromov/test_quantized.py::test_quantized_fgw_samples[numpy] 346s /usr/lib/python3/dist-packages/ot/gromov/_quantized.py:1097: UserWarning: Requested number of partitions higher than the number of nodeshence we enforce each node to be a partition. 346s part1, rep_indices1 = get_partition_and_representants_samples( 346s 346s test/test_bregman.py::test_nan_warning[sinkhorn] 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: divide by zero encountered in divide 346s K = nx.exp(M / (-reg)) 346s 346s test/test_bregman.py::test_nan_warning[sinkhorn] 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: invalid value encountered in divide 346s K = nx.exp(M / (-reg)) 346s 346s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: divide by zero encountered in divide 346s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 346s 346s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: invalid value encountered in divide 346s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 346s 346s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 346s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: divide by zero encountered in divide 346s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 346s 346s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 346s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: invalid value encountered in divide 346s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 346s 346s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-True] 346s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-False] 346s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-True] 346s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-False] 346s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_stabilized] 346s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_epsilon_scaling] 346s test/test_bregman.py::test_sinkhorn_warmstart 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1145: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 346s warnings.warn("Sinkhorn did not converge. You might want to " 346s 346s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-True] 346s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-False] 346s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-True] 346s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-False] 346s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_log] 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:747: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 346s warnings.warn("Sinkhorn did not converge. You might want to " 346s 346s test/test_bregman.py::test_sinkhorn_empty 346s test/test_bregman.py::test_sinkhorn_variants[numpy] 346s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-greenkhorn] 346s test/test_bregman.py::test_sinkhorn_variants_log 346s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:919: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 346s warnings.warn("Sinkhorn did not converge. You might want to " 346s 346s test/test_coot.py::test_coot[numpy-False] 346s test/test_coot.py::test_coot[numpy-True] 346s test/test_coot.py::test_coot[numpy-1] 346s test/test_coot.py::test_coot[numpy-0] 346s test/test_coot.py::test_coot_warmstart[numpy] 346s test/test_coot.py::test_coot_log[numpy] 346s /usr/lib/python3/dist-packages/ot/lp/__init__.py:361: UserWarning: numItermax reached before optimality. Try to increase numItermax. 346s result_code_string = check_result(result_code) 346s 346s test/test_da.py::test_sinkhorn_transport_class[numpy] 346s /usr/lib/python3/dist-packages/ot/da.py:1159: UserWarning: The method has been set to 'sinkhorn_log' as it is the only method available for out_of_sample_map='continuous' 346s warnings.warn("The method has been set to 'sinkhorn_log' as it is the only method available for out_of_sample_map='continuous'") 346s 346s test/test_mapping.py::test_joint_OT_mapping 346s /usr/lib/python3/dist-packages/ot/mapping.py:557: RuntimeWarning: invalid value encountered in scalar divide 346s if abs(vloss[-1] - vloss[-2]) / abs(vloss[-2]) < stopThr: 346s 346s test/test_mapping.py::test_joint_OT_mapping 346s /usr/lib/python3/dist-packages/ot/mapping.py:565: RuntimeWarning: invalid value encountered in scalar divide 346s it, vloss[-1], (vloss[-1] - vloss[-2]) / abs(vloss[-2]))) 346s 346s test/test_regpath.py: 232 warnings 346s /usr/lib/python3/dist-packages/ot/regpath.py:488: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 346s M[-1, -1] = 1 / s 346s 346s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 346s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:737: RuntimeWarning: divide by zero encountered in divide 346s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 346s 346s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 346s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:737: RuntimeWarning: invalid value encountered in divide 346s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 346s 346s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 346s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 346s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 346s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 346s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-1] 346s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 346s test/test_unbalanced.py::test_unbalanced_multiple_inputs[numpy-sinkhorn_reg_scaling] 346s /usr/lib/python3/dist-packages/ot/unbalanced.py:158: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 346s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 346s 346s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 346s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 346s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 346s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 346s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-True] 346s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-False] 346s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-True] 346s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-False] 346s /usr/lib/python3/dist-packages/ot/unbalanced.py:295: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 346s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 346s 346s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 346s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 346s /usr/lib/python3/dist-packages/ot/unbalanced.py:487: RuntimeWarning: overflow encountered in divide 346s v = (b / Ktu) ** fi_2 346s 346s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 346s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 346s /usr/lib/python3/dist-packages/ot/unbalanced.py:494: UserWarning: Numerical errors at iteration 180 346s warnings.warn('Numerical errors at iteration %s' % i) 346s 346s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_stabilized-inf] 346s /usr/lib/python3/dist-packages/ot/unbalanced.py:748: UserWarning: Stabilized Unbalanced Sinkhorn did not converge.Try a larger entropy `reg` or a lower mass `reg_m`.Or a larger absorption threshold `tau`. 346s warnings.warn("Stabilized Unbalanced Sinkhorn did not converge." + 346s 346s test/test_unbalanced.py::test_mm_wrong_divergence[numpy] 346s /usr/lib/python3/dist-packages/ot/unbalanced.py:1263: UserWarning: The div parameter should be either equal to 'kl' or 'l2': it has been set to 'kl'. 346s warnings.warn("The div parameter should be either equal to 'kl' or \ 346s 346s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 346s ===== 543 passed, 68 skipped, 4 xfailed, 1146 warnings in 82.55s (0:01:22) ===== 346s ********** 346s autopkgtest [20:29:17]: test upstream.sh: -----------------------] 350s autopkgtest [20:29:21]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 350s upstream.sh PASS 354s autopkgtest [20:29:25]: @@@@@@@@@@@@@@@@@@@@ summary 354s upstream.sh PASS