0s autopkgtest [01:33:04]: starting date and time: 2025-03-16 01:33:04+0000 0s autopkgtest [01:33:04]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [01:33:04]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xc2l2yos/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:scikit-learn --apt-upgrade python-pauvre --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-8 -- lxd -r lxd-armhf-10.145.243.76 lxd-armhf-10.145.243.76:autopkgtest/ubuntu/plucky/armhf 22s autopkgtest [01:33:26]: testbed dpkg architecture: armhf 24s autopkgtest [01:33:28]: testbed apt version: 2.9.33 28s autopkgtest [01:33:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [01:33:34]: testbed release detected to be: None 38s autopkgtest [01:33:42]: updating testbed package index (apt update) 40s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 40s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 41s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 41s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 41s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 41s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 41s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 41s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [74.9 kB] 41s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1792 B] 41s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 41s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [290 kB] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [10.5 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4168 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 55s Get:16 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky/main Sources [1389 kB] 56s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 57s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.5 kB] 57s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 57s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.3 MB] 65s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 67s Fetched 41.1 MB in 26s (1568 kB/s) 68s Reading package lists... 74s autopkgtest [01:34:18]: upgrading testbed (apt dist-upgrade and autopurge) 76s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 77s Starting 2 pkgProblemResolver with broken count: 0 77s Done 78s Entering ResolveByKeep 78s 79s Calculating upgrade... 79s The following packages will be upgraded: 79s pinentry-curses python3-jinja2 sos strace 79s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s Need to get 960 kB of archives. 79s After this operation, 23.6 kB of additional disk space will be used. 79s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 80s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 80s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 80s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 81s Fetched 960 kB in 1s (784 kB/s) 81s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 81s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 81s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 81s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 81s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 81s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 81s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 81s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 82s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 82s Setting up sos (4.9.0-5) ... 83s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 83s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 83s Setting up strace (6.13+ds-1ubuntu1) ... 83s Processing triggers for man-db (2.13.0-1) ... 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Starting pkgProblemResolver with broken count: 0 87s Starting 2 pkgProblemResolver with broken count: 0 87s Done 87s Solving dependencies... 87s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s autopkgtest [01:34:34]: rebooting testbed after setup commands that affected boot 134s autopkgtest [01:35:18]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 165s autopkgtest [01:35:49]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pauvre 176s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (dsc) [2485 B] 176s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (tar) [61.9 kB] 176s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (diff) [8548 B] 176s gpgv: Signature made Thu Nov 7 22:55:52 2024 UTC 176s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 176s gpgv: issuer "emollier@debian.org" 176s gpgv: Can't check signature: No public key 176s dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-4.dsc: no acceptable signature found 176s autopkgtest [01:36:00]: testing package python-pauvre version 0.2.3-4 178s autopkgtest [01:36:02]: build not needed 180s autopkgtest [01:36:04]: test run-unit-test: preparing testbed 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 183s Starting pkgProblemResolver with broken count: 0 183s Starting 2 pkgProblemResolver with broken count: 0 183s Done 184s The following NEW packages will be installed: 184s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 184s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 184s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 184s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 184s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 184s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 184s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 184s libxslt1.1 libxss1 python-matplotlib-data python3-biopython python3-brotli 184s python3-cairo python3-contourpy python3-cycler python3-decorator 184s python3-fonttools python3-freetype python3-fs python3-joblib 184s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 184s python3-mpmath python3-nanoget-examples python3-numpy python3-numpy-dev 184s python3-pandas python3-pandas-lib python3-pauvre python3-pil 184s python3-pil.imagetk python3-platformdirs python3-pytz python3-reportlab 184s python3-rlpycairo python3-scipy python3-sklearn python3-sklearn-lib 184s python3-sympy python3-threadpoolctl python3-tk python3-tz python3-ufolib2 184s python3-unicodedata2 python3.12-tk python3.13-tk sgml-base tk8.6-blt2.5 184s unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 184s 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. 184s Need to get 125 MB of archives. 184s After this operation, 394 MB of additional disk space will be used. 184s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy-dev armhf 1:2.2.3+ds-5 [141 kB] 184s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB] 184s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB] 185s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 186s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:2.2.3+ds-5 [3725 kB] 188s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB] 188s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 189s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 189s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 189s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 190s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 190s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 190s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 190s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 190s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 196s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-2ubuntu1 [37.5 kB] 196s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-2ubuntu1 [114 kB] 196s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 196s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 196s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 196s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 197s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-8 [527 kB] 197s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-8 [4824 B] 197s Get:24 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.3-1 [171 kB] 197s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 197s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 197s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 197s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 197s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 197s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 197s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 197s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB] 198s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 198s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 198s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 198s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 198s Get:37 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 198s Get:38 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 198s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 198s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 198s Get:41 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 198s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.2-1 [12.4 kB] 198s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 198s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 198s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 198s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 198s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.5.0-0.1 [11.5 kB] 198s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.5.0-0.1 [22.4 kB] 198s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu2 [152 kB] 198s Get:50 http://ftpmaster.internal/ubuntu plucky/universe armhf python-matplotlib-data all 3.8.3-7build1 [2934 kB] 200s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.9-1 [113 kB] 200s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-tk armhf 3.13.2-2 [103 kB] 200s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tk armhf 3.13.1-1 [9770 B] 200s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 11.1.0-5build1 [9226 B] 200s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.3-2 [172 kB] 200s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 11.1.0-5build1 [435 kB] 200s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cairo armhf 1.26.1-2build2 [114 kB] 201s Get:58 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-freetype all 2.5.1-1 [92.3 kB] 201s Get:59 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 201s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-reportlab all 4.3.1-1 [1137 kB] 201s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB] 201s Get:62 http://ftpmaster.internal/ubuntu plucky/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 201s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-biopython armhf 1.85+dfsg-2build1 [1692 kB] 202s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build4 [322 kB] 202s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.1-1build1 [195 kB] 202s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B] 202s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 202s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf python3-platformdirs all 4.3.6-1 [16.8 kB] 202s Get:69 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-7 [90.8 kB] 202s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.1-1build1 [1282 kB] 203s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.4.0+dfsg-1build1 [25.3 kB] 203s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.14.1-4ubuntu2 [16.7 MB] 206s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 206s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-5 [4229 kB] 206s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 206s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-unicodedata2 armhf 15.1.0+ds-1build3 [357 kB] 206s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB] 206s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.55.3-2build1 [1462 kB] 206s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-joblib all 1.4.2-3 [205 kB] 206s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-3build1 [57.7 kB] 206s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib armhf 3.8.3-7build1 [17.3 MB] 207s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-nanoget-examples all 1.19.3-1 [26.2 MB] 209s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pytz all 2025.1-3 [162 kB] 209s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2025.1-3 [1866 B] 209s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-8build1 [4877 kB] 209s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 209s Get:87 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-threadpoolctl all 3.1.0-1 [21.3 kB] 209s Get:88 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-sklearn-lib armhf 1.4.2+dfsg-8 [4014 kB] 209s Get:89 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 210s Get:90 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pauvre all 0.2.3-4 [52.7 kB] 210s Fetched 125 MB in 26s (4865 kB/s) 210s Selecting previously unselected package python3-numpy-dev:armhf. 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 210s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_armhf.deb ... 210s Unpacking python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 210s Selecting previously unselected package libblas3:armhf. 210s Preparing to unpack .../01-libblas3_3.12.1-2_armhf.deb ... 210s Unpacking libblas3:armhf (3.12.1-2) ... 210s Selecting previously unselected package libgfortran5:armhf. 210s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_armhf.deb ... 210s Unpacking libgfortran5:armhf (15-20250222-0ubuntu1) ... 210s Selecting previously unselected package liblapack3:armhf. 210s Preparing to unpack .../03-liblapack3_3.12.1-2_armhf.deb ... 210s Unpacking liblapack3:armhf (3.12.1-2) ... 211s Selecting previously unselected package python3-numpy. 211s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_armhf.deb ... 211s Unpacking python3-numpy (1:2.2.3+ds-5) ... 211s Selecting previously unselected package sgml-base. 211s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 211s Unpacking sgml-base (1.31) ... 211s Selecting previously unselected package libtcl8.6:armhf. 211s Preparing to unpack .../06-libtcl8.6_8.6.16+dfsg-1_armhf.deb ... 211s Unpacking libtcl8.6:armhf (8.6.16+dfsg-1) ... 211s Selecting previously unselected package libfreetype6:armhf. 211s Preparing to unpack .../07-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 211s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 211s Selecting previously unselected package fonts-dejavu-mono. 211s Preparing to unpack .../08-fonts-dejavu-mono_2.37-8_all.deb ... 211s Unpacking fonts-dejavu-mono (2.37-8) ... 211s Selecting previously unselected package fonts-dejavu-core. 211s Preparing to unpack .../09-fonts-dejavu-core_2.37-8_all.deb ... 211s Unpacking fonts-dejavu-core (2.37-8) ... 211s Selecting previously unselected package libfontenc1:armhf. 211s Preparing to unpack .../10-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 211s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 211s Selecting previously unselected package x11-common. 211s Preparing to unpack .../11-x11-common_1%3a7.7+23ubuntu3_all.deb ... 211s Unpacking x11-common (1:7.7+23ubuntu3) ... 211s Selecting previously unselected package xfonts-encodings. 211s Preparing to unpack .../12-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 211s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 212s Selecting previously unselected package xfonts-utils. 212s Preparing to unpack .../13-xfonts-utils_1%3a7.7+7_armhf.deb ... 212s Unpacking xfonts-utils (1:7.7+7) ... 212s Selecting previously unselected package fonts-urw-base35. 212s Preparing to unpack .../14-fonts-urw-base35_20200910-8_all.deb ... 212s Unpacking fonts-urw-base35 (20200910-8) ... 212s Selecting previously unselected package fontconfig-config. 212s Preparing to unpack .../15-fontconfig-config_2.15.0-2ubuntu1_armhf.deb ... 212s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 212s Selecting previously unselected package libfontconfig1:armhf. 212s Preparing to unpack .../16-libfontconfig1_2.15.0-2ubuntu1_armhf.deb ... 212s Unpacking libfontconfig1:armhf (2.15.0-2ubuntu1) ... 212s Selecting previously unselected package libxrender1:armhf. 212s Preparing to unpack .../17-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 212s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 212s Selecting previously unselected package libxft2:armhf. 212s Preparing to unpack .../18-libxft2_2.3.6-1build1_armhf.deb ... 212s Unpacking libxft2:armhf (2.3.6-1build1) ... 212s Selecting previously unselected package libxss1:armhf. 212s Preparing to unpack .../19-libxss1_1%3a1.2.3-1build3_armhf.deb ... 212s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 212s Selecting previously unselected package libtk8.6:armhf. 213s Preparing to unpack .../20-libtk8.6_8.6.16-1_armhf.deb ... 213s Unpacking libtk8.6:armhf (8.6.16-1) ... 213s Selecting previously unselected package tk8.6-blt2.5. 213s Preparing to unpack .../21-tk8.6-blt2.5_2.5.3+dfsg-8_armhf.deb ... 213s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 213s Selecting previously unselected package blt. 213s Preparing to unpack .../22-blt_2.5.3+dfsg-8_armhf.deb ... 213s Unpacking blt (2.5.3+dfsg-8) ... 213s Selecting previously unselected package fonts-lyx. 213s Preparing to unpack .../23-fonts-lyx_2.4.3-1_all.deb ... 213s Unpacking fonts-lyx (2.4.3-1) ... 213s Selecting previously unselected package libpixman-1-0:armhf. 213s Preparing to unpack .../24-libpixman-1-0_0.44.0-3_armhf.deb ... 213s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 213s Selecting previously unselected package libxcb-render0:armhf. 213s Preparing to unpack .../25-libxcb-render0_1.17.0-2_armhf.deb ... 213s Unpacking libxcb-render0:armhf (1.17.0-2) ... 213s Selecting previously unselected package libxcb-shm0:armhf. 213s Preparing to unpack .../26-libxcb-shm0_1.17.0-2_armhf.deb ... 213s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 213s Selecting previously unselected package libcairo2:armhf. 213s Preparing to unpack .../27-libcairo2_1.18.2-2_armhf.deb ... 213s Unpacking libcairo2:armhf (1.18.2-2) ... 213s Selecting previously unselected package libdeflate0:armhf. 213s Preparing to unpack .../28-libdeflate0_1.23-1_armhf.deb ... 213s Unpacking libdeflate0:armhf (1.23-1) ... 213s Selecting previously unselected package libgomp1:armhf. 213s Preparing to unpack .../29-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 213s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 213s Selecting previously unselected package libgraphite2-3:armhf. 213s Preparing to unpack .../30-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 213s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 213s Selecting previously unselected package libharfbuzz0b:armhf. 213s Preparing to unpack .../31-libharfbuzz0b_10.2.0-1_armhf.deb ... 213s Unpacking libharfbuzz0b:armhf (10.2.0-1) ... 213s Selecting previously unselected package libimagequant0:armhf. 213s Preparing to unpack .../32-libimagequant0_2.18.0-1build1_armhf.deb ... 213s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 213s Selecting previously unselected package libjpeg-turbo8:armhf. 213s Preparing to unpack .../33-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 213s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 213s Selecting previously unselected package libjpeg8:armhf. 213s Preparing to unpack .../34-libjpeg8_8c-2ubuntu11_armhf.deb ... 213s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 213s Selecting previously unselected package libjs-jquery. 213s Preparing to unpack .../35-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 213s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 213s Selecting previously unselected package libjs-jquery-ui. 213s Preparing to unpack .../36-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 213s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 214s Selecting previously unselected package liblbfgsb0:armhf. 214s Preparing to unpack .../37-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 214s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 214s Selecting previously unselected package liblcms2-2:armhf. 214s Preparing to unpack .../38-liblcms2-2_2.16-2_armhf.deb ... 214s Unpacking liblcms2-2:armhf (2.16-2) ... 214s Selecting previously unselected package liblerc4:armhf. 214s Preparing to unpack .../39-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 214s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 214s Selecting previously unselected package libqhull-r8.0:armhf. 214s Preparing to unpack .../40-libqhull-r8.0_2020.2-6build1_armhf.deb ... 214s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 214s Selecting previously unselected package libraqm0:armhf. 214s Preparing to unpack .../41-libraqm0_0.10.2-1_armhf.deb ... 214s Unpacking libraqm0:armhf (0.10.2-1) ... 214s Selecting previously unselected package libsharpyuv0:armhf. 214s Preparing to unpack .../42-libsharpyuv0_1.5.0-0.1_armhf.deb ... 214s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 214s Selecting previously unselected package libjbig0:armhf. 214s Preparing to unpack .../43-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 214s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 214s Selecting previously unselected package libwebp7:armhf. 214s Preparing to unpack .../44-libwebp7_1.5.0-0.1_armhf.deb ... 214s Unpacking libwebp7:armhf (1.5.0-0.1) ... 214s Selecting previously unselected package libtiff6:armhf. 214s Preparing to unpack .../45-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 214s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 214s Selecting previously unselected package libwebpdemux2:armhf. 214s Preparing to unpack .../46-libwebpdemux2_1.5.0-0.1_armhf.deb ... 214s Unpacking libwebpdemux2:armhf (1.5.0-0.1) ... 214s Selecting previously unselected package libwebpmux3:armhf. 214s Preparing to unpack .../47-libwebpmux3_1.5.0-0.1_armhf.deb ... 214s Unpacking libwebpmux3:armhf (1.5.0-0.1) ... 214s Selecting previously unselected package libxslt1.1:armhf. 214s Preparing to unpack .../48-libxslt1.1_1.1.39-0exp1ubuntu2_armhf.deb ... 214s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu2) ... 214s Selecting previously unselected package python-matplotlib-data. 214s Preparing to unpack .../49-python-matplotlib-data_3.8.3-7build1_all.deb ... 214s Unpacking python-matplotlib-data (3.8.3-7build1) ... 215s Selecting previously unselected package python3.12-tk. 215s Preparing to unpack .../50-python3.12-tk_3.12.9-1_armhf.deb ... 215s Unpacking python3.12-tk (3.12.9-1) ... 215s Selecting previously unselected package python3.13-tk. 215s Preparing to unpack .../51-python3.13-tk_3.13.2-2_armhf.deb ... 215s Unpacking python3.13-tk (3.13.2-2) ... 215s Selecting previously unselected package python3-tk:armhf. 215s Preparing to unpack .../52-python3-tk_3.13.1-1_armhf.deb ... 215s Unpacking python3-tk:armhf (3.13.1-1) ... 215s Selecting previously unselected package python3-pil.imagetk:armhf. 215s Preparing to unpack .../53-python3-pil.imagetk_11.1.0-5build1_armhf.deb ... 215s Unpacking python3-pil.imagetk:armhf (11.1.0-5build1) ... 215s Selecting previously unselected package libopenjp2-7:armhf. 215s Preparing to unpack .../54-libopenjp2-7_2.5.3-2_armhf.deb ... 215s Unpacking libopenjp2-7:armhf (2.5.3-2) ... 215s Selecting previously unselected package python3-pil:armhf. 215s Preparing to unpack .../55-python3-pil_11.1.0-5build1_armhf.deb ... 215s Unpacking python3-pil:armhf (11.1.0-5build1) ... 215s Selecting previously unselected package python3-cairo. 215s Preparing to unpack .../56-python3-cairo_1.26.1-2build2_armhf.deb ... 215s Unpacking python3-cairo (1.26.1-2build2) ... 215s Selecting previously unselected package python3-freetype. 215s Preparing to unpack .../57-python3-freetype_2.5.1-1_all.deb ... 215s Unpacking python3-freetype (2.5.1-1) ... 215s Selecting previously unselected package python3-rlpycairo. 215s Preparing to unpack .../58-python3-rlpycairo_0.3.0-3_all.deb ... 215s Unpacking python3-rlpycairo (0.3.0-3) ... 215s Selecting previously unselected package python3-reportlab. 215s Preparing to unpack .../59-python3-reportlab_4.3.1-1_all.deb ... 215s Unpacking python3-reportlab (4.3.1-1) ... 215s Selecting previously unselected package xml-core. 215s Preparing to unpack .../60-xml-core_0.19_all.deb ... 215s Unpacking xml-core (0.19) ... 215s Selecting previously unselected package w3c-sgml-lib. 215s Preparing to unpack .../61-w3c-sgml-lib_1.3-3_all.deb ... 215s Unpacking w3c-sgml-lib (1.3-3) ... 216s Selecting previously unselected package python3-biopython. 216s Preparing to unpack .../62-python3-biopython_1.85+dfsg-2build1_armhf.deb ... 216s Unpacking python3-biopython (1.85+dfsg-2build1) ... 216s Selecting previously unselected package python3-brotli. 216s Preparing to unpack .../63-python3-brotli_1.1.0-2build4_armhf.deb ... 216s Unpacking python3-brotli (1.1.0-2build4) ... 216s Selecting previously unselected package python3-contourpy. 216s Preparing to unpack .../64-python3-contourpy_1.3.1-1build1_armhf.deb ... 216s Unpacking python3-contourpy (1.3.1-1build1) ... 216s Selecting previously unselected package python3-cycler. 216s Preparing to unpack .../65-python3-cycler_0.12.1-1_all.deb ... 216s Unpacking python3-cycler (0.12.1-1) ... 216s Selecting previously unselected package python3-decorator. 216s Preparing to unpack .../66-python3-decorator_5.1.1-5_all.deb ... 216s Unpacking python3-decorator (5.1.1-5) ... 216s Selecting previously unselected package python3-platformdirs. 216s Preparing to unpack .../67-python3-platformdirs_4.3.6-1_all.deb ... 216s Unpacking python3-platformdirs (4.3.6-1) ... 216s Selecting previously unselected package python3-fs. 216s Preparing to unpack .../68-python3-fs_2.4.16-7_all.deb ... 216s Unpacking python3-fs (2.4.16-7) ... 216s Selecting previously unselected package python3-lxml:armhf. 216s Preparing to unpack .../69-python3-lxml_5.3.1-1build1_armhf.deb ... 216s Unpacking python3-lxml:armhf (5.3.1-1build1) ... 216s Selecting previously unselected package python3-lz4. 216s Preparing to unpack .../70-python3-lz4_4.4.0+dfsg-1build1_armhf.deb ... 216s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ... 216s Selecting previously unselected package python3-scipy. 216s Preparing to unpack .../71-python3-scipy_1.14.1-4ubuntu2_armhf.deb ... 216s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 217s Selecting previously unselected package python3-mpmath. 217s Preparing to unpack .../72-python3-mpmath_1.3.0-1_all.deb ... 217s Unpacking python3-mpmath (1.3.0-1) ... 217s Selecting previously unselected package python3-sympy. 217s Preparing to unpack .../73-python3-sympy_1.13.3-5_all.deb ... 217s Unpacking python3-sympy (1.13.3-5) ... 218s Selecting previously unselected package python3-ufolib2. 218s Preparing to unpack .../74-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 218s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 218s Selecting previously unselected package python3-unicodedata2. 218s Preparing to unpack .../75-python3-unicodedata2_15.1.0+ds-1build3_armhf.deb ... 218s Unpacking python3-unicodedata2 (15.1.0+ds-1build3) ... 218s Selecting previously unselected package unicode-data. 218s Preparing to unpack .../76-unicode-data_15.1.0-1_all.deb ... 218s Unpacking unicode-data (15.1.0-1) ... 218s Selecting previously unselected package python3-fonttools. 218s Preparing to unpack .../77-python3-fonttools_4.55.3-2build1_armhf.deb ... 218s Unpacking python3-fonttools (4.55.3-2build1) ... 219s Selecting previously unselected package python3-joblib. 219s Preparing to unpack .../78-python3-joblib_1.4.2-3_all.deb ... 219s Unpacking python3-joblib (1.4.2-3) ... 219s Selecting previously unselected package python3-kiwisolver. 219s Preparing to unpack .../79-python3-kiwisolver_1.4.7-3build1_armhf.deb ... 219s Unpacking python3-kiwisolver (1.4.7-3build1) ... 219s Selecting previously unselected package python3-matplotlib. 219s Preparing to unpack .../80-python3-matplotlib_3.8.3-7build1_armhf.deb ... 219s Unpacking python3-matplotlib (3.8.3-7build1) ... 220s Selecting previously unselected package python3-nanoget-examples. 220s Preparing to unpack .../81-python3-nanoget-examples_1.19.3-1_all.deb ... 220s Unpacking python3-nanoget-examples (1.19.3-1) ... 220s Selecting previously unselected package python3-pytz. 220s Preparing to unpack .../82-python3-pytz_2025.1-3_all.deb ... 220s Unpacking python3-pytz (2025.1-3) ... 220s Selecting previously unselected package python3-tz. 220s Preparing to unpack .../83-python3-tz_2025.1-3_all.deb ... 220s Unpacking python3-tz (2025.1-3) ... 220s Selecting previously unselected package python3-pandas-lib:armhf. 220s Preparing to unpack .../84-python3-pandas-lib_2.2.3+dfsg-8build1_armhf.deb ... 220s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-8build1) ... 220s Selecting previously unselected package python3-pandas. 220s Preparing to unpack .../85-python3-pandas_2.2.3+dfsg-8build1_all.deb ... 220s Unpacking python3-pandas (2.2.3+dfsg-8build1) ... 221s Selecting previously unselected package python3-threadpoolctl. 221s Preparing to unpack .../86-python3-threadpoolctl_3.1.0-1_all.deb ... 221s Unpacking python3-threadpoolctl (3.1.0-1) ... 221s Selecting previously unselected package python3-sklearn-lib:armhf. 221s Preparing to unpack .../87-python3-sklearn-lib_1.4.2+dfsg-8_armhf.deb ... 221s Unpacking python3-sklearn-lib:armhf (1.4.2+dfsg-8) ... 221s Selecting previously unselected package python3-sklearn. 221s Preparing to unpack .../88-python3-sklearn_1.4.2+dfsg-8_all.deb ... 221s Unpacking python3-sklearn (1.4.2+dfsg-8) ... 221s Selecting previously unselected package python3-pauvre. 221s Preparing to unpack .../89-python3-pauvre_0.2.3-4_all.deb ... 221s Unpacking python3-pauvre (0.2.3-4) ... 221s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 221s Setting up liblcms2-2:armhf (2.16-2) ... 221s Setting up libpixman-1-0:armhf (0.44.0-3) ... 221s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 221s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 221s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 221s Setting up python3-joblib (1.4.2-3) ... 222s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 222s Setting up libxcb-render0:armhf (1.17.0-2) ... 222s Setting up python3-unicodedata2 (15.1.0+ds-1build3) ... 222s Setting up fonts-lyx (2.4.3-1) ... 222s Setting up python3-threadpoolctl (3.1.0-1) ... 222s Setting up x11-common (1:7.7+23ubuntu3) ... 223s Setting up libdeflate0:armhf (1.23-1) ... 223s Setting up libqhull-r8.0:armhf (2020.2-6build1) ... 223s Setting up python3-pytz (2025.1-3) ... 223s Setting up libxcb-shm0:armhf (1.17.0-2) ... 223s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 223s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 223s Setting up python3-platformdirs (4.3.6-1) ... 223s Setting up python3-tz (2025.1-3) ... 223s Setting up python3-fs (2.4.16-7) ... 224s Setting up unicode-data (15.1.0-1) ... 224s Setting up python3-decorator (5.1.1-5) ... 224s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 224s Setting up libblas3:armhf (3.12.1-2) ... 224s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 224s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 224s Setting up python3-brotli (1.1.0-2build4) ... 224s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 224s Setting up python3-cycler (0.12.1-1) ... 224s Setting up libimagequant0:armhf (2.18.0-1build1) ... 224s Setting up fonts-dejavu-mono (2.37-8) ... 224s Setting up python3-kiwisolver (1.4.7-3build1) ... 224s Setting up python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 224s Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... 224s Setting up fonts-dejavu-core (2.37-8) ... 224s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 224s Setting up libgfortran5:armhf (15-20250222-0ubuntu1) ... 224s Setting up libwebp7:armhf (1.5.0-0.1) ... 224s Setting up libxslt1.1:armhf (1.1.39-0exp1ubuntu2) ... 224s Setting up python3-nanoget-examples (1.19.3-1) ... 224s Setting up libopenjp2-7:armhf (2.5.3-2) ... 224s Setting up libharfbuzz0b:armhf (10.2.0-1) ... 224s Setting up sgml-base (1.31) ... 224s Setting up libxss1:armhf (1:1.2.3-1build3) ... 224s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 224s Setting up python3-mpmath (1.3.0-1) ... 225s Setting up python-matplotlib-data (3.8.3-7build1) ... 225s Setting up libwebpmux3:armhf (1.5.0-0.1) ... 225s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 225s Setting up python3-sympy (1.13.3-5) ... 232s Setting up liblapack3:armhf (3.12.1-2) ... 232s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 232s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 232s Setting up libwebpdemux2:armhf (1.5.0-0.1) ... 232s Setting up python3-freetype (2.5.1-1) ... 232s Setting up xfonts-utils (1:7.7+7) ... 232s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 232s Setting up libraqm0:armhf (0.10.2-1) ... 232s Setting up python3-numpy (1:2.2.3+ds-5) ... 235s Setting up python3-lxml:armhf (5.3.1-1build1) ... 235s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 235s Setting up xml-core (0.19) ... 235s Setting up python3-contourpy (1.3.1-1build1) ... 235s Setting up libfontconfig1:armhf (2.15.0-2ubuntu1) ... 235s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 235s Setting up libxft2:armhf (2.3.6-1build1) ... 235s Setting up python3-scipy (1.14.1-4ubuntu2) ... 239s Setting up libtk8.6:armhf (8.6.16-1) ... 239s Setting up python3-pandas-lib:armhf (2.2.3+dfsg-8build1) ... 239s Setting up python3.12-tk (3.12.9-1) ... 240s Setting up python3-sklearn-lib:armhf (1.4.2+dfsg-8) ... 240s Setting up fonts-urw-base35 (20200910-8) ... 240s Setting up libcairo2:armhf (1.18.2-2) ... 240s Setting up python3.13-tk (3.13.2-2) ... 240s Setting up python3-pil:armhf (11.1.0-5build1) ... 240s Setting up python3-pandas (2.2.3+dfsg-8build1) ... 246s Setting up python3-sklearn (1.4.2+dfsg-8) ... 248s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 248s Setting up python3-cairo (1.26.1-2build2) ... 248s Setting up blt (2.5.3+dfsg-8) ... 248s Setting up python3-tk:armhf (3.13.1-1) ... 248s Setting up python3-pil.imagetk:armhf (11.1.0-5build1) ... 248s Setting up python3-rlpycairo (0.3.0-3) ... 249s Setting up python3-reportlab (4.3.1-1) ... 250s Setting up python3-fonttools (4.55.3-2build1) ... 251s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 251s Setting up python3-matplotlib (3.8.3-7build1) ... 253s Processing triggers for libc-bin (2.41-1ubuntu1) ... 254s Processing triggers for man-db (2.13.0-1) ... 255s Processing triggers for sgml-base (1.31) ... 255s Setting up w3c-sgml-lib (1.3-3) ... 288s Setting up python3-biopython (1.85+dfsg-2build1) ... 289s Setting up python3-pauvre (0.2.3-4) ... 296s autopkgtest [01:38:00]: test run-unit-test: [----------------------- 298s 298s #git clone https://github.com/wdecoster/nanotest.git 298s 298s pauvre -h 298s usage: pauvre [-h] [-v] 298s {browser,custommargin,marginplot,redwood,stats,synplot} ... 298s 298s options: 298s -h, --help show this help message and exit 298s -v, --version Installed pauvre version 298s 298s [sub-commands]: 298s {browser,custommargin,marginplot,redwood,stats,synplot} 298s browser an adaptable genome browser with various track types 298s custommargin plot custom marginal histograms of tab-delimited files 298s marginplot plot a marginal histogram of a fastq file 298s redwood make a redwood plot from a bam file 298s stats outputs stats from a fastq file 298s synplot make a synteny plot from a gff file, protein 298s alignment, and partition file 298s 298s pauvre marginplot -h 298s usage: pauvre marginplot [-h] [-q] [--dpi dpi] [-f FASTQ] 298s [--fileform STRING [STRING ...]] 298s [--filt_maxlen FILT_MAXLEN] 298s [--filt_maxqual FILT_MAXQUAL] 298s [--filt_minlen FILT_MINLEN] 298s [--filt_minqual FILT_MINQUAL] [--kmerdf KMERDF] [-n] 298s [--no_timestamp] [-o BASENAME] 298s [--plot_maxlen PLOT_MAXLEN] 298s [--plot_maxqual PLOT_MAXQUAL] 298s [--plot_minlen PLOT_MINLEN] 298s [--plot_minqual PLOT_MINQUAL] [--lengthbin LENGTHBIN] 298s [--qualbin QUALBIN] [-t TITLE] [-y] 298s 298s options: 298s -h, --help show this help message and exit 298s -q, --quiet Do not output warnings to stderr 298s --dpi dpi Change the dpi from the default 600 if you need it 298s higher 298s -f, --fastq FASTQ The input FASTQ file. 298s --fileform STRING [STRING ...] 298s Which output format would you like? Def.=png 298s --filt_maxlen FILT_MAXLEN 298s This sets the max read length filter reads. 298s --filt_maxqual FILT_MAXQUAL 298s This sets the max mean read quality to filter reads. 298s --filt_minlen FILT_MINLEN 298s This sets the min read length to filter reads. 298s --filt_minqual FILT_MINQUAL 298s This sets the min mean read quality to filter reads. 298s --kmerdf KMERDF Pass the filename of a data matrix if you would like 298s to plot read length versus number of kmers in that 298s read. The data matrix is a tab-separated text file 298s with columns "id length numks and kmers", where: 298s = read id = the length of the read = 298s the number of canonical kmers in the read = a 298s list representation of kmers ie ['GAT', 'GTA'] 298s -n, --no_transparent Specify this option if you don't want a transparent 298s background. Default is on. 298s --no_timestamp Turn off time stamps in the filename output. 298s -o, --output_base_name BASENAME 298s Specify a base name for the output file(s). The input 298s file base name is the default. 298s --plot_maxlen PLOT_MAXLEN 298s Sets the maximum viewing area in the length dimension. 298s --plot_maxqual PLOT_MAXQUAL 298s Sets the maximum viewing area in the quality 298s dimension. 298s --plot_minlen PLOT_MINLEN 298s Sets the minimum viewing area in the length dimension. 298s --plot_minqual PLOT_MINQUAL 298s Sets the minimum viewing area in the quality 298s dimension. 298s --lengthbin LENGTHBIN 298s This sets the bin size to use for length. 298s --qualbin QUALBIN This sets the bin size to use for quality 298s -t, --title TITLE This sets the title for the whole plot. Use --title 298s "Crustacean's DNA read quality" if you need single 298s quote or apostrophe inside title. 298s -y, --add-yaxes Add Y-axes to both marginal histograms. 298s pauvre marginplot -f nanotest/reads.fastq.gz 301s Keeping reads that satisfy: length >= 0 and meanQual >= 0 302s # Fastq stats for reads.fastq.gz, reads >= 0bp 302s numReads: 371 302s %totalNumReads: 100.00 302s numBasepairs: 8611871 302s %totalBasepairs: 100.00 302s meanLen: 23212.590296495957 302s medianLen: 9390.0 302s minLen: 212 302s maxLen: 393431 302s N50: 60395 302s L50: 36 302s 302s # Fastq stats for reads.fastq.gz, reads >= 1000bp 302s numReads: 349 302s %totalNumReads: 94.07 302s numBasepairs: 8599196 302s %totalBasepairs: 99.85 302s meanLen: 24639.530085959886 302s medianLen: 10585.0 302s minLen: 1009 302s maxLen: 393431 302s N50: 60395 302s L50: 36 302s 302s # Fastq stats for reads.fastq.gz, reads >= 5000bp 302s numReads: 246 302s %totalNumReads: 66.31 302s numBasepairs: 8296771 302s %totalBasepairs: 96.34 302s meanLen: 33726.71138211382 302s medianLen: 17146.0 302s minLen: 5082 302s maxLen: 393431 302s N50: 61111 302s L50: 33 302s 302s # Fastq stats for reads.fastq.gz, reads >= 10000bp 302s numReads: 178 302s %totalNumReads: 47.98 302s numBasepairs: 7817574 302s %totalBasepairs: 90.78 302s meanLen: 43918.95505617977 302s medianLen: 25216.5 302s minLen: 10192 302s maxLen: 393431 302s N50: 67193 302s L50: 30 302s 302s 302s Basepairs >= bin by mean PHRED and length 302s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 302s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 302s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 302s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 302s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 302s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 302s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 302s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 302s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 302s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 302s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 302s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 302s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 302s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 302s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 302s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 302s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 302s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 302s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 302s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 302s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 302s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 302s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 302s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 302s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 302s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 302s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 302s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 302s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 302s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 302s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 302s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 302s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 302s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 302s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 302s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 302s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 302s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 302s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 302s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 302s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 302s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 302s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 302s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 302s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 302s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 302s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 302s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 302s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 302s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 302s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 302s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 302s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 302s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 302s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 302s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 302s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 302s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 302s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 302s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 302s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 302s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 302s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 302s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 302s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 302s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 302s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 302s 140000 1699582 1699582 1378920 930176 341725 0 0 0 302s 160000 1699582 1699582 1378920 930176 341725 0 0 0 302s 180000 1699582 1699582 1378920 930176 341725 0 0 0 302s 200000 1504562 1504562 1183900 735156 341725 0 0 0 302s 220000 1504562 1504562 1183900 735156 341725 0 0 0 302s 240000 1055818 1055818 735156 735156 341725 0 0 0 302s 260000 1055818 1055818 735156 735156 341725 0 0 0 302s 280000 1055818 1055818 735156 735156 341725 0 0 0 302s 300000 1055818 1055818 735156 735156 341725 0 0 0 302s 320000 1055818 1055818 735156 735156 341725 0 0 0 302s 340000 735156 735156 735156 735156 341725 0 0 0 302s 360000 393431 393431 393431 393431 0 0 0 0 302s 380000 393431 393431 393431 393431 0 0 0 0 302s 400000 0 0 0 0 0 0 0 0 302s 302s Number of reads >= bin by mean Phred+Len 302s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 302s 0 371 321 277 207 114 49 2 0 302s 250 369 320 276 206 113 48 2 0 302s 500 363 315 273 203 112 47 2 0 302s 750 355 311 270 201 111 46 2 0 302s 1000 349 307 266 197 108 44 2 0 302s 1500 341 302 263 194 106 44 2 0 302s 2000 322 284 245 179 98 42 2 0 302s 2500 308 271 233 172 94 40 2 0 302s 3000 296 264 227 167 93 40 2 0 302s 3500 282 251 215 156 84 36 2 0 302s 4000 268 237 201 144 79 36 2 0 302s 4500 256 226 192 140 77 34 2 0 302s 5000 246 216 184 134 73 33 2 0 302s 5500 236 208 176 130 72 32 1 0 302s 6000 226 199 167 121 68 30 1 0 302s 6500 215 190 160 115 65 28 0 0 302s 7000 209 185 156 113 64 28 0 0 302s 7500 203 179 151 110 62 26 0 0 302s 8000 197 174 146 106 59 25 0 0 302s 8500 191 170 142 103 57 25 0 0 302s 9000 188 167 140 101 56 24 0 0 302s 9500 182 161 137 100 55 24 0 0 302s 10000 178 157 135 99 54 24 0 0 302s 11000 169 150 129 94 51 24 0 0 302s 12000 160 142 122 90 48 22 0 0 302s 13000 144 128 111 84 46 21 0 0 302s 14000 138 123 107 80 44 19 0 0 302s 15000 134 119 103 76 41 18 0 0 302s 16000 130 116 100 74 41 18 0 0 302s 17000 123 109 94 69 38 17 0 0 302s 18000 119 105 90 65 34 16 0 0 302s 19000 115 102 87 63 33 15 0 0 302s 20000 111 98 84 61 33 15 0 0 302s 21000 105 93 80 58 30 13 0 0 302s 22000 100 90 77 56 28 12 0 0 302s 23000 96 86 73 53 26 11 0 0 302s 24000 94 84 71 51 26 11 0 0 302s 25000 90 80 68 49 25 11 0 0 302s 26000 88 78 67 49 25 11 0 0 302s 27000 84 74 64 47 23 10 0 0 302s 28000 81 71 61 46 22 9 0 0 302s 29000 76 66 57 42 21 8 0 0 302s 30000 71 61 52 38 20 8 0 0 302s 31000 69 59 50 36 19 7 0 0 302s 32000 67 57 48 34 18 7 0 0 302s 33000 66 56 47 33 18 7 0 0 302s 34000 66 56 47 33 18 7 0 0 302s 35000 64 55 46 32 18 7 0 0 302s 36000 61 52 45 31 18 7 0 0 302s 37000 58 49 44 30 17 7 0 0 302s 38000 58 49 44 30 17 7 0 0 302s 39000 57 49 44 30 17 7 0 0 302s 40000 57 49 44 30 17 7 0 0 302s 45000 52 46 42 29 17 7 0 0 302s 50000 47 42 38 25 16 6 0 0 302s 55000 43 38 34 21 13 4 0 0 302s 60000 36 31 28 18 10 3 0 0 302s 65000 32 28 25 16 9 2 0 0 302s 70000 28 25 23 14 9 2 0 0 302s 75000 23 21 19 12 7 2 0 0 302s 80000 21 19 18 11 7 2 0 0 302s 85000 20 18 17 11 7 2 0 0 302s 90000 17 16 15 10 6 2 0 0 302s 95000 17 16 15 10 6 2 0 0 302s 100000 14 13 12 8 4 1 0 0 302s 120000 10 9 8 5 2 0 0 0 302s 140000 6 6 5 3 1 0 0 0 302s 160000 6 6 5 3 1 0 0 0 302s 180000 6 6 5 3 1 0 0 0 302s 200000 5 5 4 2 1 0 0 0 302s 220000 5 5 4 2 1 0 0 0 302s 240000 3 3 2 2 1 0 0 0 302s 260000 3 3 2 2 1 0 0 0 302s 280000 3 3 2 2 1 0 0 0 302s 300000 3 3 2 2 1 0 0 0 302s 320000 3 3 2 2 1 0 0 0 302s 340000 2 2 2 2 1 0 0 0 302s 360000 1 1 1 1 0 0 0 0 302s 380000 1 1 1 1 0 0 0 0 302s 400000 0 0 0 0 0 0 0 0 303s plotting in the following window: 303s 0 <= Q-score (x-axis) <= 14.0 303s 0 <= length (y-axis) <= 223383 304s 304s pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000 306s Keeping reads that satisfy: length >= 0 and meanQual >= 0 and length <= 30000 307s plotting in the following window: 307s 0 <= Q-score (x-axis) <= 14.0 307s 0 <= length (y-axis) <= 29294 308s # Fastq stats for reads.fastq.gz, reads >= 0bp 308s numReads: 300 308s %totalNumReads: 100.00 308s numBasepairs: 2729844 308s %totalBasepairs: 100.00 308s meanLen: 9099.48 308s medianLen: 6204.5 308s minLen: 212 308s maxLen: 29590 308s N50: 15222 308s L50: 61 308s 308s # Fastq stats for reads.fastq.gz, reads >= 1000bp 308s numReads: 278 308s %totalNumReads: 92.67 308s numBasepairs: 2717169 308s %totalBasepairs: 99.54 308s meanLen: 9773.989208633093 308s medianLen: 6910.0 308s minLen: 1009 308s maxLen: 29590 308s N50: 15222 308s L50: 61 308s 308s # Fastq stats for reads.fastq.gz, reads >= 5000bp 308s numReads: 175 308s %totalNumReads: 58.33 308s numBasepairs: 2414744 308s %totalBasepairs: 88.46 308s meanLen: 13798.537142857143 308s medianLen: 12063.0 308s minLen: 5082 308s maxLen: 29590 308s N50: 17307 308s L50: 52 308s 308s # Fastq stats for reads.fastq.gz, reads >= 10000bp 308s numReads: 107 308s %totalNumReads: 35.67 308s numBasepairs: 1935547 308s %totalBasepairs: 70.90 308s meanLen: 18089.22429906542 308s medianLen: 16881.0 308s minLen: 10192 308s maxLen: 29590 308s N50: 20295 308s L50: 39 308s 308s 308s Basepairs >= bin by mean PHRED and length 308s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 308s 0 2729844 2468957 2119643 1556484 858972 393665 11781 0 308s 250 2729407 2468745 2119431 1556272 858760 393453 11781 0 308s 500 2726928 2466658 2118130 1554971 858291 392984 11781 0 308s 750 2721984 2464209 2116192 1553563 857617 392310 11781 0 308s 1000 2717169 2460965 2112948 1550319 855138 390635 11781 0 308s 1500 2707362 2454822 2109268 1546639 852794 390635 11781 0 308s 2000 2672887 2422266 2076712 1519238 838240 387346 11781 0 308s 2500 2641814 2393384 2050243 1503478 829208 382949 11781 0 308s 3000 2609116 2374168 2033904 1489726 826376 382949 11781 0 308s 3500 2564269 2332442 1995335 1454265 797280 370584 11781 0 308s 4000 2512068 2280241 1943134 1409238 778266 370584 11781 0 308s 4500 2462190 2234445 1905756 1392691 769886 362204 11781 0 308s 5000 2414744 2186999 1867774 1364464 750909 357457 11781 0 308s 5500 2362072 2144943 1825718 1343414 745461 352009 6333 0 308s 6000 2305333 2093889 1774664 1292360 722519 340437 6333 0 308s 6500 2236325 2037511 1730586 1254474 703348 327653 0 0 308s 7000 2195737 2003551 1703356 1240708 696434 327653 0 0 308s 7500 2152591 1960405 1667528 1219336 682352 313571 0 0 308s 8000 2106380 1921709 1628832 1188281 658986 305742 0 0 308s 8500 2056889 1888763 1595886 1163795 642742 305742 0 0 308s 9000 2030952 1862826 1578483 1146392 633884 296884 0 0 308s 9500 1974999 1806873 1550171 1136895 624387 296884 0 0 308s 10000 1935547 1767421 1530498 1126915 614407 296884 0 0 308s 11000 1840006 1693127 1467100 1074138 582873 296884 0 0 308s 12000 1736297 1600554 1386518 1027634 547567 273563 0 0 308s 13000 1534978 1424405 1249051 952931 523214 261500 0 0 308s 14000 1453681 1356704 1195131 899011 495787 234073 0 0 308s 15000 1395434 1298457 1136884 840764 451857 219542 0 0 308s 16000 1334255 1252372 1090799 809901 451857 219542 0 0 308s 17000 1217331 1135448 990860 726799 401685 202825 0 0 308s 18000 1146730 1064847 920259 656198 331084 185250 0 0 308s 19000 1072466 1008770 864182 618776 312433 166599 0 0 308s 20000 993686 929990 805391 579331 312433 166599 0 0 308s 21000 870897 827698 723394 518156 251258 126075 0 0 308s 22000 763379 763379 659075 475682 208784 104960 0 0 308s 23000 673728 673728 569424 408210 163731 82719 0 0 308s 24000 627024 627024 522720 361506 163731 82719 0 0 308s 25000 528646 528646 448453 312153 138944 82719 0 0 308s 26000 478213 478213 423121 312153 138944 82719 0 0 308s 27000 372570 372570 343949 259378 86169 56621 0 0 308s 28000 289458 289458 260837 231544 58335 28787 0 0 308s 29000 147115 147115 147115 117822 29548 0 0 0 308s 30000 0 0 0 0 0 0 0 0 308s 308s Number of reads >= bin by mean Phred+Len 308s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 308s 0 300 260 225 169 94 41 2 0 308s 250 298 259 224 168 93 40 2 0 308s 500 292 254 221 165 92 39 2 0 308s 750 284 250 218 163 91 38 2 0 308s 1000 278 246 214 159 88 36 2 0 308s 1500 270 241 211 156 86 36 2 0 308s 2000 251 223 193 141 78 34 2 0 308s 2500 237 210 181 134 74 32 2 0 308s 3000 225 203 175 129 73 32 2 0 308s 3500 211 190 163 118 64 28 2 0 308s 4000 197 176 149 106 59 28 2 0 308s 4500 185 165 140 102 57 26 2 0 308s 5000 175 155 132 96 53 25 2 0 308s 5500 165 147 124 92 52 24 1 0 308s 6000 155 138 115 83 48 22 1 0 308s 6500 144 129 108 77 45 20 0 0 308s 7000 138 124 104 75 44 20 0 0 308s 7500 132 118 99 72 42 18 0 0 308s 8000 126 113 94 68 39 17 0 0 308s 8500 120 109 90 65 37 17 0 0 308s 9000 117 106 88 63 36 16 0 0 308s 9500 111 100 85 62 35 16 0 0 308s 10000 107 96 83 61 34 16 0 0 308s 11000 98 89 77 56 31 16 0 0 308s 12000 89 81 70 52 28 14 0 0 308s 13000 73 67 59 46 26 13 0 0 308s 14000 67 62 55 42 24 11 0 0 308s 15000 63 58 51 38 21 10 0 0 308s 16000 59 55 48 36 21 10 0 0 308s 17000 52 48 42 31 18 9 0 0 308s 18000 48 44 38 27 14 8 0 0 308s 19000 44 41 35 25 13 7 0 0 308s 20000 40 37 32 23 13 7 0 0 308s 21000 34 32 28 20 10 5 0 0 308s 22000 29 29 25 18 8 4 0 0 308s 23000 25 25 21 15 6 3 0 0 308s 24000 23 23 19 13 6 3 0 0 308s 25000 19 19 16 11 5 3 0 0 308s 26000 17 17 15 11 5 3 0 0 308s 27000 13 13 12 9 3 2 0 0 308s 28000 10 10 9 8 2 1 0 0 308s 29000 5 5 5 4 1 0 0 0 308s 30000 0 0 0 0 0 0 0 0 308s 308s pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg 310s Keeping reads that satisfy: length >= 0 and meanQual >= 7.0 311s # Fastq stats for reads.fastq.gz, reads >= 0bp 311s numReads: 371 311s %totalNumReads: 100.00 311s numBasepairs: 8611871 311s %totalBasepairs: 100.00 311s meanLen: 23212.590296495957 311s medianLen: 9390.0 311s minLen: 212 311s maxLen: 393431 311s N50: 60395 311s L50: 36 311s 311s # Fastq stats for reads.fastq.gz, reads >= 1000bp 311s numReads: 349 311s %totalNumReads: 94.07 311s numBasepairs: 8599196 311s %totalBasepairs: 99.85 311s meanLen: 24639.530085959886 311s medianLen: 10585.0 311s minLen: 1009 311s maxLen: 393431 311s N50: 60395 311s L50: 36 311s 311s # Fastq stats for reads.fastq.gz, reads >= 5000bp 311s numReads: 246 311s %totalNumReads: 66.31 311s numBasepairs: 8296771 311s %totalBasepairs: 96.34 311s meanLen: 33726.71138211382 311s medianLen: 17146.0 311s minLen: 5082 311s maxLen: 393431 311s N50: 61111 311s L50: 33 311s 311s # Fastq stats for reads.fastq.gz, reads >= 10000bp 311s numReads: 178 311s %totalNumReads: 47.98 311s numBasepairs: 7817574 311s %totalBasepairs: 90.78 311s meanLen: 43918.95505617977 311s medianLen: 25216.5 311s minLen: 10192 311s maxLen: 393431 311s N50: 67193 311s L50: 30 311s 311s 311s Basepairs >= bin by mean PHRED and length 311s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 311s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 311s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 311s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 311s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 311s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 311s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 311s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 311s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 311s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 311s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 311s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 311s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 311s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 311s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 311s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 311s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 311s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 311s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 311s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 311s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 311s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 311s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 311s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 311s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 311s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 311s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 311s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 311s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 311s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 311s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 311s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 311s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 311s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 311s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 311s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 311s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 311s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 311s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 311s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 311s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 311s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 311s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 311s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 311s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 311s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 311s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 311s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 311s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 311s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 311s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 311s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 311s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 311s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 311s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 311s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 311s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 311s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 311s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 311s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 311s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 311s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 311s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 311s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 311s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 311s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 311s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 311s 140000 1699582 1699582 1378920 930176 341725 0 0 0 311s 160000 1699582 1699582 1378920 930176 341725 0 0 0 311s 180000 1699582 1699582 1378920 930176 341725 0 0 0 311s 200000 1504562 1504562 1183900 735156 341725 0 0 0 311s 220000 1504562 1504562 1183900 735156 341725 0 0 0 311s 240000 1055818 1055818 735156 735156 341725 0 0 0 311s 260000 1055818 1055818 735156 735156 341725 0 0 0 311s 280000 1055818 1055818 735156 735156 341725 0 0 0 311s 300000 1055818 1055818 735156 735156 341725 0 0 0 311s 320000 1055818 1055818 735156 735156 341725 0 0 0 311s 340000 735156 735156 735156 735156 341725 0 0 0 311s 360000 393431 393431 393431 393431 0 0 0 0 311s 380000 393431 393431 393431 393431 0 0 0 0 311s 400000 0 0 0 0 0 0 0 0 311s 311s Number of reads >= bin by mean Phred+Len 311s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 311s 0 371 321 277 207 114 49 2 0 311s 250 369 320 276 206 113 48 2 0 311s 500 363 315 273 203 112 47 2 0 311s 750 355 311 270 201 111 46 2 0 311s 1000 349 307 266 197 108 44 2 0 311s 1500 341 302 263 194 106 44 2 0 311s 2000 322 284 245 179 98 42 2 0 311s 2500 308 271 233 172 94 40 2 0 311s 3000 296 264 227 167 93 40 2 0 311s 3500 282 251 215 156 84 36 2 0 311s 4000 268 237 201 144 79 36 2 0 311s 4500 256 226 192 140 77 34 2 0 311s 5000 246 216 184 134 73 33 2 0 311s 5500 236 208 176 130 72 32 1 0 311s 6000 226 199 167 121 68 30 1 0 311s 6500 215 190 160 115 65 28 0 0 311s 7000 209 185 156 113 64 28 0 0 311s 7500 203 179 151 110 62 26 0 0 311s 8000 197 174 146 106 59 25 0 0 311s 8500 191 170 142 103 57 25 0 0 311s 9000 188 167 140 101 56 24 0 0 311s 9500 182 161 137 100 55 24 0 0 311s 10000 178 157 135 99 54 24 0 0 311s 11000 169 150 129 94 51 24 0 0 311s 12000 160 142 122 90 48 22 0 0 311s 13000 144 128 111 84 46 21 0 0 311s 14000 138 123 107 80 44 19 0 0 311s 15000 134 119 103 76 41 18 0 0 311s 16000 130 116 100 74 41 18 0 0 311s 17000 123 109 94 69 38 17 0 0 311s 18000 119 105 90 65 34 16 0 0 311s 19000 115 102 87 63 33 15 0 0 311s 20000 111 98 84 61 33 15 0 0 311s 21000 105 93 80 58 30 13 0 0 311s 22000 100 90 77 56 28 12 0 0 311s 23000 96 86 73 53 26 11 0 0 311s 24000 94 84 71 51 26 11 0 0 311s 25000 90 80 68 49 25 11 0 0 311s 26000 88 78 67 49 25 11 0 0 311s 27000 84 74 64 47 23 10 0 0 311s 28000 81 71 61 46 22 9 0 0 311s 29000 76 66 57 42 21 8 0 0 311s 30000 71 61 52 38 20 8 0 0 311s 31000 69 59 50 36 19 7 0 0 311s 32000 67 57 48 34 18 7 0 0 311s 33000 66 56 47 33 18 7 0 0 311s 34000 66 56 47 33 18 7 0 0 311s 35000 64 55 46 32 18 7 0 0 311s 36000 61 52 45 31 18 7 0 0 311s 37000 58 49 44 30 17 7 0 0 311s 38000 58 49 44 30 17 7 0 0 311s 39000 57 49 44 30 17 7 0 0 311s 40000 57 49 44 30 17 7 0 0 311s 45000 52 46 42 29 17 7 0 0 311s 50000 47 42 38 25 16 6 0 0 311s 55000 43 38 34 21 13 4 0 0 311s 60000 36 31 28 18 10 3 0 0 311s 65000 32 28 25 16 9 2 0 0 311s 70000 28 25 23 14 9 2 0 0 311s 75000 23 21 19 12 7 2 0 0 311s 80000 21 19 18 11 7 2 0 0 311s 85000 20 18 17 11 7 2 0 0 311s 90000 17 16 15 10 6 2 0 0 311s 95000 17 16 15 10 6 2 0 0 311s 100000 14 13 12 8 4 1 0 0 311s 120000 10 9 8 5 2 0 0 0 311s 140000 6 6 5 3 1 0 0 0 311s 160000 6 6 5 3 1 0 0 0 311s 180000 6 6 5 3 1 0 0 0 311s 200000 5 5 4 2 1 0 0 0 311s 220000 5 5 4 2 1 0 0 0 311s 240000 3 3 2 2 1 0 0 0 311s 260000 3 3 2 2 1 0 0 0 311s 280000 3 3 2 2 1 0 0 0 311s 300000 3 3 2 2 1 0 0 0 311s 320000 3 3 2 2 1 0 0 0 311s 340000 2 2 2 2 1 0 0 0 311s 360000 1 1 1 1 0 0 0 0 311s 380000 1 1 1 1 0 0 0 0 311s 400000 0 0 0 0 0 0 0 0 312s plotting in the following window: 312s 0 <= Q-score (x-axis) <= 14.0 312s 0 <= length (y-axis) <= 223383 312s 313s 313s pauvre stats -h 313s usage: pauvre stats [-h] [-q] [-f FASTQ] [-H] [--filt_maxlen FILT_MAXLEN] 313s [--filt_maxqual FILT_MAXQUAL] [--filt_minlen FILT_MINLEN] 313s [--filt_minqual FILT_MINQUAL] 313s 313s options: 313s -h, --help show this help message and exit 313s -q, --quiet Do not output warnings to stderr 313s -f, --fastq FASTQ The input FASTQ file. 313s -H, --histogram Make a histogram of the read lengths and saves it to a 313s new file 313s --filt_maxlen FILT_MAXLEN 313s This sets the max read length filter reads. 313s --filt_maxqual FILT_MAXQUAL 313s This sets the max mean read quality to filter reads. 313s --filt_minlen FILT_MINLEN 313s This sets the min read length to filter reads. 313s --filt_minqual FILT_MINQUAL 313s This sets the min mean read quality to filter reads. 313s pauvre stats -f nanotest/reads.fastq.gz 316s # Fastq stats for reads.fastq.gz, reads >= 0bp 316s numReads: 371 316s %totalNumReads: 100.00 316s numBasepairs: 8611871 316s %totalBasepairs: 100.00 316s meanLen: 23212.590296495957 316s medianLen: 9390.0 316s minLen: 212 316s maxLen: 393431 316s N50: 60395 316s L50: 36 316s 316s # Fastq stats for reads.fastq.gz, reads >= 1000bp 316s numReads: 349 316s %totalNumReads: 94.07 316s numBasepairs: 8599196 316s %totalBasepairs: 99.85 316s meanLen: 24639.530085959886 316s medianLen: 10585.0 316s minLen: 1009 316s maxLen: 393431 316s N50: 60395 316s L50: 36 316s 316s # Fastq stats for reads.fastq.gz, reads >= 5000bp 316s numReads: 246 316s %totalNumReads: 66.31 316s numBasepairs: 8296771 316s %totalBasepairs: 96.34 316s meanLen: 33726.71138211382 316s medianLen: 17146.0 316s minLen: 5082 316s maxLen: 393431 316s N50: 61111 316s L50: 33 316s 316s # Fastq stats for reads.fastq.gz, reads >= 10000bp 316s numReads: 178 316s %totalNumReads: 47.98 316s numBasepairs: 7817574 316s %totalBasepairs: 90.78 316s meanLen: 43918.95505617977 316s medianLen: 25216.5 316s minLen: 10192 316s maxLen: 393431 316s N50: 67193 316s L50: 30 316s 316s 316s Basepairs >= bin by mean PHRED and length 316s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 316s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 316s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 316s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 316s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 316s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 316s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 316s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 316s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 316s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 316s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 316s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 316s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 316s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 316s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 316s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 316s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 316s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 316s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 316s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 316s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 316s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 316s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 316s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 316s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 316s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 316s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 316s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 316s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 316s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 316s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 316s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 316s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 316s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 316s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 316s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 316s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 316s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 316s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 316s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 316s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 316s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 316s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 316s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 316s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 316s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 316s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 316s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 316s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 316s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 316s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 316s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 316s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 316s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 316s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 316s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 316s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 316s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 316s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 316s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 316s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 316s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 316s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 316s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 316s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 316s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 316s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 316s 140000 1699582 1699582 1378920 930176 341725 0 0 0 316s 160000 1699582 1699582 1378920 930176 341725 0 0 0 316s 180000 1699582 1699582 1378920 930176 341725 0 0 0 316s 200000 1504562 1504562 1183900 735156 341725 0 0 0 316s 220000 1504562 1504562 1183900 735156 341725 0 0 0 316s 240000 1055818 1055818 735156 735156 341725 0 0 0 316s 260000 1055818 1055818 735156 735156 341725 0 0 0 316s 280000 1055818 1055818 735156 735156 341725 0 0 0 316s 300000 1055818 1055818 735156 735156 341725 0 0 0 316s 320000 1055818 1055818 735156 735156 341725 0 0 0 316s 340000 735156 735156 735156 735156 341725 0 0 0 316s 360000 393431 393431 393431 393431 0 0 0 0 316s 380000 393431 393431 393431 393431 0 0 0 0 316s 400000 0 0 0 0 0 0 0 0 316s 316s Number of reads >= bin by mean Phred+Len 316s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 316s 0 371 321 277 207 114 49 2 0 316s 250 369 320 276 206 113 48 2 0 316s 500 363 315 273 203 112 47 2 0 316s 750 355 311 270 201 111 46 2 0 316s 1000 349 307 266 197 108 44 2 0 316s 1500 341 302 263 194 106 44 2 0 316s 2000 322 284 245 179 98 42 2 0 316s 2500 308 271 233 172 94 40 2 0 316s 3000 296 264 227 167 93 40 2 0 316s 3500 282 251 215 156 84 36 2 0 316s 4000 268 237 201 144 79 36 2 0 316s 4500 256 226 192 140 77 34 2 0 316s 5000 246 216 184 134 73 33 2 0 316s 5500 236 208 176 130 72 32 1 0 316s 6000 226 199 167 121 68 30 1 0 316s 6500 215 190 160 115 65 28 0 0 316s 7000 209 185 156 113 64 28 0 0 316s 7500 203 179 151 110 62 26 0 0 316s 8000 197 174 146 106 59 25 0 0 316s 8500 191 170 142 103 57 25 0 0 316s 9000 188 167 140 101 56 24 0 0 316s 9500 182 161 137 100 55 24 0 0 316s 10000 178 157 135 99 54 24 0 0 316s 11000 169 150 129 94 51 24 0 0 316s 12000 160 142 122 90 48 22 0 0 316s 13000 144 128 111 84 46 21 0 0 316s 14000 138 123 107 80 44 19 0 0 316s 15000 134 119 103 76 41 18 0 0 316s 16000 130 116 100 74 41 18 0 0 316s 17000 123 109 94 69 38 17 0 0 316s 18000 119 105 90 65 34 16 0 0 316s 19000 115 102 87 63 33 15 0 0 316s 20000 111 98 84 61 33 15 0 0 316s 21000 105 93 80 58 30 13 0 0 316s 22000 100 90 77 56 28 12 0 0 316s 23000 96 86 73 53 26 11 0 0 316s 24000 94 84 71 51 26 11 0 0 316s 25000 90 80 68 49 25 11 0 0 316s 26000 88 78 67 49 25 11 0 0 316s 27000 84 74 64 47 23 10 0 0 316s 28000 81 71 61 46 22 9 0 0 316s 29000 76 66 57 42 21 8 0 0 316s 30000 71 61 52 38 20 8 0 0 316s 31000 69 59 50 36 19 7 0 0 316s 32000 67 57 48 34 18 7 0 0 316s 33000 66 56 47 33 18 7 0 0 316s 34000 66 56 47 33 18 7 0 0 316s 35000 64 55 46 32 18 7 0 0 316s 36000 61 52 45 31 18 7 0 0 316s 37000 58 49 44 30 17 7 0 0 316s 38000 58 49 44 30 17 7 0 0 316s 39000 57 49 44 30 17 7 0 0 316s 40000 57 49 44 30 17 7 0 0 316s 45000 52 46 42 29 17 7 0 0 316s 50000 47 42 38 25 16 6 0 0 316s 55000 43 38 34 21 13 4 0 0 316s 60000 36 31 28 18 10 3 0 0 316s 65000 32 28 25 16 9 2 0 0 316s 70000 28 25 23 14 9 2 0 0 316s 75000 23 21 19 12 7 2 0 0 316s 80000 21 19 18 11 7 2 0 0 316s 85000 20 18 17 11 7 2 0 0 316s 90000 17 16 15 10 6 2 0 0 316s 95000 17 16 15 10 6 2 0 0 316s 100000 14 13 12 8 4 1 0 0 316s 120000 10 9 8 5 2 0 0 0 316s 140000 6 6 5 3 1 0 0 0 316s 160000 6 6 5 3 1 0 0 0 316s 180000 6 6 5 3 1 0 0 0 316s 200000 5 5 4 2 1 0 0 0 316s 220000 5 5 4 2 1 0 0 0 316s 240000 3 3 2 2 1 0 0 0 316s 260000 3 3 2 2 1 0 0 0 316s 280000 3 3 2 2 1 0 0 0 316s 300000 3 3 2 2 1 0 0 0 316s 320000 3 3 2 2 1 0 0 0 316s 340000 2 2 2 2 1 0 0 0 316s 360000 1 1 1 1 0 0 0 0 316s 380000 1 1 1 1 0 0 0 0 316s 400000 0 0 0 0 0 0 0 0 316s 316s pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12 319s # Fastq stats for reads.fastq.gz, reads >= 0bp 319s numReads: 371 319s %totalNumReads: 100.00 319s numBasepairs: 8611871 319s %totalBasepairs: 100.00 319s meanLen: 23212.590296495957 319s medianLen: 9390.0 319s minLen: 212 319s maxLen: 393431 319s N50: 60395 319s L50: 36 319s 319s # Fastq stats for reads.fastq.gz, reads >= 1000bp 319s numReads: 349 319s %totalNumReads: 94.07 319s numBasepairs: 8599196 319s %totalBasepairs: 99.85 319s meanLen: 24639.530085959886 319s medianLen: 10585.0 319s minLen: 1009 319s maxLen: 393431 319s N50: 60395 319s L50: 36 319s 319s # Fastq stats for reads.fastq.gz, reads >= 5000bp 319s numReads: 246 319s %totalNumReads: 66.31 319s numBasepairs: 8296771 319s %totalBasepairs: 96.34 319s meanLen: 33726.71138211382 319s medianLen: 17146.0 319s minLen: 5082 319s maxLen: 393431 319s N50: 61111 319s L50: 33 319s 319s # Fastq stats for reads.fastq.gz, reads >= 10000bp 319s numReads: 178 319s %totalNumReads: 47.98 319s numBasepairs: 7817574 319s %totalBasepairs: 90.78 319s meanLen: 43918.95505617977 319s medianLen: 25216.5 319s minLen: 10192 319s maxLen: 393431 319s N50: 67193 319s L50: 30 319s 319s 319s Basepairs >= bin by mean PHRED and length 319s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 319s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 319s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 319s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 319s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 319s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 319s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 319s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 319s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 319s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 319s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 319s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 319s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 319s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 319s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 319s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 319s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 319s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 319s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 319s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 319s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 319s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 319s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 319s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 319s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 319s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 319s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 319s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 319s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 319s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 319s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 319s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 319s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 319s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 319s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 319s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 319s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 319s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 319s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 319s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 319s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 319s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 319s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 319s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 319s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 319s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 319s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 319s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 319s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 319s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 319s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 319s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 319s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 319s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 319s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 319s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 319s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 319s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 319s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 319s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 319s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 319s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 319s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 319s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 319s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 319s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 319s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 319s 140000 1699582 1699582 1378920 930176 341725 0 0 0 319s 160000 1699582 1699582 1378920 930176 341725 0 0 0 319s 180000 1699582 1699582 1378920 930176 341725 0 0 0 319s 200000 1504562 1504562 1183900 735156 341725 0 0 0 319s 220000 1504562 1504562 1183900 735156 341725 0 0 0 319s 240000 1055818 1055818 735156 735156 341725 0 0 0 319s 260000 1055818 1055818 735156 735156 341725 0 0 0 319s 280000 1055818 1055818 735156 735156 341725 0 0 0 319s 300000 1055818 1055818 735156 735156 341725 0 0 0 319s 320000 1055818 1055818 735156 735156 341725 0 0 0 319s 340000 735156 735156 735156 735156 341725 0 0 0 319s 360000 393431 393431 393431 393431 0 0 0 0 319s 380000 393431 393431 393431 393431 0 0 0 0 319s 400000 0 0 0 0 0 0 0 0 319s 319s Number of reads >= bin by mean Phred+Len 319s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 319s 0 371 321 277 207 114 49 2 0 319s 250 369 320 276 206 113 48 2 0 319s 500 363 315 273 203 112 47 2 0 319s 750 355 311 270 201 111 46 2 0 319s 1000 349 307 266 197 108 44 2 0 319s 1500 341 302 263 194 106 44 2 0 319s 2000 322 284 245 179 98 42 2 0 319s 2500 308 271 233 172 94 40 2 0 319s 3000 296 264 227 167 93 40 2 0 319s 3500 282 251 215 156 84 36 2 0 319s 4000 268 237 201 144 79 36 2 0 319s 4500 256 226 192 140 77 34 2 0 319s 5000 246 216 184 134 73 33 2 0 319s 5500 236 208 176 130 72 32 1 0 319s 6000 226 199 167 121 68 30 1 0 319s 6500 215 190 160 115 65 28 0 0 319s 7000 209 185 156 113 64 28 0 0 319s 7500 203 179 151 110 62 26 0 0 319s 8000 197 174 146 106 59 25 0 0 319s 8500 191 170 142 103 57 25 0 0 319s 9000 188 167 140 101 56 24 0 0 319s 9500 182 161 137 100 55 24 0 0 319s 10000 178 157 135 99 54 24 0 0 319s 11000 169 150 129 94 51 24 0 0 319s 12000 160 142 122 90 48 22 0 0 319s 13000 144 128 111 84 46 21 0 0 319s 14000 138 123 107 80 44 19 0 0 319s 15000 134 119 103 76 41 18 0 0 319s 16000 130 116 100 74 41 18 0 0 319s 17000 123 109 94 69 38 17 0 0 319s 18000 119 105 90 65 34 16 0 0 319s 19000 115 102 87 63 33 15 0 0 319s 20000 111 98 84 61 33 15 0 0 319s 21000 105 93 80 58 30 13 0 0 319s 22000 100 90 77 56 28 12 0 0 319s 23000 96 86 73 53 26 11 0 0 319s 24000 94 84 71 51 26 11 0 0 319s 25000 90 80 68 49 25 11 0 0 319s 26000 88 78 67 49 25 11 0 0 319s 27000 84 74 64 47 23 10 0 0 319s 28000 81 71 61 46 22 9 0 0 319s 29000 76 66 57 42 21 8 0 0 319s 30000 71 61 52 38 20 8 0 0 319s 31000 69 59 50 36 19 7 0 0 319s 32000 67 57 48 34 18 7 0 0 319s 33000 66 56 47 33 18 7 0 0 319s 34000 66 56 47 33 18 7 0 0 319s 35000 64 55 46 32 18 7 0 0 319s 36000 61 52 45 31 18 7 0 0 319s 37000 58 49 44 30 17 7 0 0 319s 38000 58 49 44 30 17 7 0 0 319s 39000 57 49 44 30 17 7 0 0 319s 40000 57 49 44 30 17 7 0 0 319s 45000 52 46 42 29 17 7 0 0 319s 50000 47 42 38 25 16 6 0 0 319s 55000 43 38 34 21 13 4 0 0 319s 60000 36 31 28 18 10 3 0 0 319s 65000 32 28 25 16 9 2 0 0 319s 70000 28 25 23 14 9 2 0 0 319s 75000 23 21 19 12 7 2 0 0 319s 80000 21 19 18 11 7 2 0 0 319s 85000 20 18 17 11 7 2 0 0 319s 90000 17 16 15 10 6 2 0 0 319s 95000 17 16 15 10 6 2 0 0 319s 100000 14 13 12 8 4 1 0 0 319s 120000 10 9 8 5 2 0 0 0 319s 140000 6 6 5 3 1 0 0 0 319s 160000 6 6 5 3 1 0 0 0 319s 180000 6 6 5 3 1 0 0 0 319s 200000 5 5 4 2 1 0 0 0 319s 220000 5 5 4 2 1 0 0 0 319s 240000 3 3 2 2 1 0 0 0 319s 260000 3 3 2 2 1 0 0 0 319s 280000 3 3 2 2 1 0 0 0 319s 300000 3 3 2 2 1 0 0 0 319s 320000 3 3 2 2 1 0 0 0 319s 340000 2 2 2 2 1 0 0 0 319s 360000 1 1 1 1 0 0 0 0 319s 380000 1 1 1 1 0 0 0 0 319s 400000 0 0 0 0 0 0 0 0 319s 319s autopkgtest [01:38:23]: test run-unit-test: -----------------------] 323s autopkgtest [01:38:27]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 323s run-unit-test PASS 328s autopkgtest [01:38:32]: @@@@@@@@@@@@@@@@@@@@ summary 328s run-unit-test PASS