0s autopkgtest [20:23:29]: starting date and time: 2024-11-15 20:23:29+0000 0s autopkgtest [20:23:29]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [20:23:29]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p92cch1k/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:scikit-learn --apt-upgrade python-pauvre --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-6build1 -- lxd -r lxd-armhf-10.145.243.158 lxd-armhf-10.145.243.158:autopkgtest/ubuntu/plucky/armhf 55s autopkgtest [20:24:24]: testbed dpkg architecture: armhf 57s autopkgtest [20:24:26]: testbed apt version: 2.9.8 57s autopkgtest [20:24:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 65s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1043 kB] 65s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 65s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 65s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [92.2 kB] 65s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [143 kB] 65s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [747 kB] 65s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4428 B] 65s Fetched 2126 kB in 1s (2445 kB/s) 65s Reading package lists... 82s tee: /proc/self/fd/2: Permission denied 103s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 103s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 103s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 105s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 106s The following NEW packages will be installed: 106s libassuan9 106s The following packages will be upgraded: 106s libgpgme11t64 libseccomp2 python3-cffi-backend python3-markupsafe 106s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 297 kB of archives. 106s After this operation, 224 kB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libseccomp2 armhf 2.5.5-1ubuntu5 [49.3 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2build1 [75.9 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libassuan9 armhf 3.0.1-2 [34.3 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.24.0-2ubuntu1 [125 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-markupsafe armhf 2.1.5-1build3 [12.5 kB] 107s Fetched 297 kB in 0s (633 kB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 107s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu5_armhf.deb ... 107s Unpacking libseccomp2:armhf (2.5.5-1ubuntu5) over (2.5.5-1ubuntu4) ... 107s Setting up libseccomp2:armhf (2.5.5-1ubuntu5) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 107s Preparing to unpack .../python3-cffi-backend_1.17.1-2build1_armhf.deb ... 107s Unpacking python3-cffi-backend:armhf (1.17.1-2build1) over (1.17.1-2) ... 107s Selecting previously unselected package libassuan9:armhf. 107s Preparing to unpack .../libassuan9_3.0.1-2_armhf.deb ... 107s Unpacking libassuan9:armhf (3.0.1-2) ... 107s Preparing to unpack .../libgpgme11t64_1.24.0-2ubuntu1_armhf.deb ... 107s Unpacking libgpgme11t64:armhf (1.24.0-2ubuntu1) over (1.23.2-5ubuntu4) ... 107s Preparing to unpack .../python3-markupsafe_2.1.5-1build3_armhf.deb ... 107s Unpacking python3-markupsafe (2.1.5-1build3) over (2.1.5-1build2) ... 107s Setting up python3-markupsafe (2.1.5-1build3) ... 107s Setting up libassuan9:armhf (3.0.1-2) ... 107s Setting up libgpgme11t64:armhf (1.24.0-2ubuntu1) ... 107s Setting up python3-cffi-backend:armhf (1.17.1-2build1) ... 107s Processing triggers for libc-bin (2.40-1ubuntu3) ... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s autopkgtest [20:25:20]: rebooting testbed after setup commands that affected boot 178s autopkgtest [20:26:27]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 204s autopkgtest [20:26:53]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pauvre 214s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (dsc) [2485 B] 214s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (tar) [61.9 kB] 214s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-pauvre 0.2.3-4 (diff) [8548 B] 214s gpgv: Signature made Thu Nov 7 22:55:52 2024 UTC 214s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 214s gpgv: issuer "emollier@debian.org" 214s gpgv: Can't check signature: No public key 214s dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-4.dsc: no acceptable signature found 214s autopkgtest [20:27:03]: testing package python-pauvre version 0.2.3-4 216s autopkgtest [20:27:05]: build not needed 218s autopkgtest [20:27:07]: test run-unit-test: preparing testbed 227s Reading package lists... 228s Building dependency tree... 228s Reading state information... 228s Starting pkgProblemResolver with broken count: 0 228s Starting 2 pkgProblemResolver with broken count: 0 228s Done 229s The following additional packages will be installed: 229s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 229s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 229s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 229s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 229s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 229s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 229s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 229s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 229s python3-brotli python3-cairo python3-contourpy python3-cycler 229s python3-dateutil python3-decorator python3-fonttools python3-freetype 229s python3-fs python3-joblib python3-kiwisolver python3-lxml python3-lz4 229s python3-matplotlib python3-mpmath python3-nanoget-examples python3-numpy 229s python3-packaging python3-pandas python3-pandas-lib python3-pauvre 229s python3-pil python3-pil.imagetk python3-reportlab python3-rlpycairo 229s python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-sympy 229s python3-threadpoolctl python3-tk python3-tz python3-ufolib2 229s python3-unicodedata2 python3.12-tk sgml-base tk8.6-blt2.5 unicode-data 229s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 229s Suggested packages: 229s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 229s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 229s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 229s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 229s t-coffee wise python-cycler-doc python-joblib-doc python-lxml-doc 229s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 229s inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi 229s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 229s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 229s gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc 229s python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools 229s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap 229s python-sklearn-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 229s python3.13-tk sgml-base-doc debhelper 229s Recommended packages: 229s javascript-common python-biopython-doc ncbi-blast+ python3-pytest 229s python3-simplejson python3-psutil python3-bs4 python3-cssselect 229s python3-html5lib python3-bottleneck python3-numexpr python3-odf 229s python3-openpyxl python3-tables python3-olefile fonts-dejavu-extra g++ 229s | c++-compiler isympy-common 229s The following NEW packages will be installed: 229s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 229s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 229s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 229s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 229s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 229s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 229s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 229s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 229s python3-brotli python3-cairo python3-contourpy python3-cycler 229s python3-dateutil python3-decorator python3-fonttools python3-freetype 229s python3-fs python3-joblib python3-kiwisolver python3-lxml python3-lz4 229s python3-matplotlib python3-mpmath python3-nanoget-examples python3-numpy 229s python3-packaging python3-pandas python3-pandas-lib python3-pauvre 229s python3-pil python3-pil.imagetk python3-reportlab python3-rlpycairo 229s python3-scipy python3-six python3-sklearn python3-sklearn-lib python3-sympy 229s python3-threadpoolctl python3-tk python3-tz python3-ufolib2 229s python3-unicodedata2 python3.12-tk sgml-base tk8.6-blt2.5 unicode-data 229s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 229s 0 upgraded, 91 newly installed, 0 to remove and 0 not upgraded. 229s Need to get 113 MB/113 MB of archives. 229s After this operation, 357 MB of additional disk space will be used. 229s Get:1 /tmp/autopkgtest.TtEKQC/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [724 B] 229s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB] 229s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [909 kB] 230s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 230s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 230s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 231s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 231s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 231s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 231s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 231s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 232s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 232s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 232s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 232s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 232s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 232s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.15-1 [685 kB] 233s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7build1 [525 kB] 233s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-7build1 [4840 B] 233s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.2.1-1 [171 kB] 233s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 233s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 233s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 233s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 233s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 233s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 233s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 233s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 233s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 233s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 233s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 233s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 233s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 233s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 233s Get:35 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 233s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 233s Get:37 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 233s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 233s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 233s Get:40 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 233s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB] 233s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 233s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 233s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 233s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 233s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 233s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 233s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu1 [150 kB] 233s Get:49 http://ftpmaster.internal/ubuntu plucky/universe armhf python-matplotlib-data all 3.8.3-3 [2928 kB] 233s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf python3-appdirs all 1.4.4-4 [10.9 kB] 233s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 233s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.7-3 [112 kB] 233s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tk armhf 3.12.6-1ubuntu1 [9806 B] 233s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 10.4.0-1ubuntu1 [8848 B] 233s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 233s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu1 [428 kB] 233s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cairo armhf 1.26.1-2 [114 kB] 233s Get:58 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-freetype all 2.5.1-1 [92.3 kB] 233s Get:59 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 233s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-reportlab all 4.2.5-1 [1107 kB] 233s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB] 234s Get:62 http://ftpmaster.internal/ubuntu plucky/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 234s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-biopython armhf 1.84+dfsg-4 [1666 kB] 234s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build2 [321 kB] 234s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.0-2build1 [238 kB] 234s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B] 234s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf python3-six all 1.16.0-7 [13.1 kB] 234s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dateutil all 2.9.0-2 [80.3 kB] 234s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 234s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 234s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 234s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 234s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB] 234s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2024.1-2 [31.4 kB] 234s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-4 [91.3 kB] 234s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.0-1 [1234 kB] 234s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.0.2+dfsg-1build4 [24.8 kB] 234s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-unicodedata2 armhf 15.1.0+ds-1build2 [357 kB] 234s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB] 235s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.46.0-1build2 [1402 kB] 235s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-joblib all 1.3.2-5 [206 kB] 235s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-2build1 [71.1 kB] 235s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 235s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib armhf 3.8.3-3 [4500 kB] 235s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-nanoget-examples all 1.19.3-1 [26.2 MB] 236s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-5 [4728 kB] 236s Get:87 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas all 2.2.3+dfsg-5 [3112 kB] 236s Get:88 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-threadpoolctl all 3.1.0-1 [21.3 kB] 236s Get:89 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-sklearn-lib armhf 1.4.2+dfsg-6build1 [6321 kB] 236s Get:90 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-sklearn all 1.4.2+dfsg-6build1 [2257 kB] 236s Get:91 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pauvre all 0.2.3-4 [52.7 kB] 237s Fetched 113 MB in 7s (16.1 MB/s) 237s Selecting previously unselected package sgml-base. 237s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59573 files and directories currently installed.) 237s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 237s Unpacking sgml-base (1.31) ... 237s Selecting previously unselected package libtcl8.6:armhf. 237s Preparing to unpack .../01-libtcl8.6_8.6.15+dfsg-2_armhf.deb ... 237s Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ... 237s Selecting previously unselected package libfreetype6:armhf. 237s Preparing to unpack .../02-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 237s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 237s Selecting previously unselected package fonts-dejavu-mono. 237s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 237s Unpacking fonts-dejavu-mono (2.37-8) ... 237s Selecting previously unselected package fonts-dejavu-core. 237s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 237s Unpacking fonts-dejavu-core (2.37-8) ... 237s Selecting previously unselected package libfontenc1:armhf. 237s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 237s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 237s Selecting previously unselected package x11-common. 237s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu3_all.deb ... 237s Unpacking x11-common (1:7.7+23ubuntu3) ... 237s Selecting previously unselected package xfonts-encodings. 237s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 237s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 237s Selecting previously unselected package xfonts-utils. 237s Preparing to unpack .../08-xfonts-utils_1%3a7.7+7_armhf.deb ... 237s Unpacking xfonts-utils (1:7.7+7) ... 237s Selecting previously unselected package fonts-urw-base35. 237s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 237s Unpacking fonts-urw-base35 (20200910-8) ... 237s Selecting previously unselected package fontconfig-config. 237s Preparing to unpack .../10-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 238s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 238s Selecting previously unselected package libfontconfig1:armhf. 238s Preparing to unpack .../11-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 238s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 238s Selecting previously unselected package libxrender1:armhf. 238s Preparing to unpack .../12-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 238s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 238s Selecting previously unselected package libxft2:armhf. 238s Preparing to unpack .../13-libxft2_2.3.6-1build1_armhf.deb ... 238s Unpacking libxft2:armhf (2.3.6-1build1) ... 238s Selecting previously unselected package libxss1:armhf. 238s Preparing to unpack .../14-libxss1_1%3a1.2.3-1build3_armhf.deb ... 238s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 238s Selecting previously unselected package libtk8.6:armhf. 238s Preparing to unpack .../15-libtk8.6_8.6.15-1_armhf.deb ... 238s Unpacking libtk8.6:armhf (8.6.15-1) ... 238s Selecting previously unselected package tk8.6-blt2.5. 238s Preparing to unpack .../16-tk8.6-blt2.5_2.5.3+dfsg-7build1_armhf.deb ... 238s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 238s Selecting previously unselected package blt. 238s Preparing to unpack .../17-blt_2.5.3+dfsg-7build1_armhf.deb ... 238s Unpacking blt (2.5.3+dfsg-7build1) ... 238s Selecting previously unselected package fonts-lyx. 238s Preparing to unpack .../18-fonts-lyx_2.4.2.1-1_all.deb ... 238s Unpacking fonts-lyx (2.4.2.1-1) ... 238s Selecting previously unselected package libblas3:armhf. 238s Preparing to unpack .../19-libblas3_3.12.0-3build2_armhf.deb ... 238s Unpacking libblas3:armhf (3.12.0-3build2) ... 238s Selecting previously unselected package libpixman-1-0:armhf. 238s Preparing to unpack .../20-libpixman-1-0_0.44.0-3_armhf.deb ... 238s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 238s Selecting previously unselected package libxcb-render0:armhf. 238s Preparing to unpack .../21-libxcb-render0_1.17.0-2_armhf.deb ... 238s Unpacking libxcb-render0:armhf (1.17.0-2) ... 238s Selecting previously unselected package libxcb-shm0:armhf. 238s Preparing to unpack .../22-libxcb-shm0_1.17.0-2_armhf.deb ... 238s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 238s Selecting previously unselected package libcairo2:armhf. 238s Preparing to unpack .../23-libcairo2_1.18.2-2_armhf.deb ... 238s Unpacking libcairo2:armhf (1.18.2-2) ... 238s Selecting previously unselected package libdeflate0:armhf. 238s Preparing to unpack .../24-libdeflate0_1.22-1_armhf.deb ... 238s Unpacking libdeflate0:armhf (1.22-1) ... 238s Selecting previously unselected package libgfortran5:armhf. 238s Preparing to unpack .../25-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 238s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 238s Selecting previously unselected package libgomp1:armhf. 238s Preparing to unpack .../26-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 238s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 238s Selecting previously unselected package libgraphite2-3:armhf. 238s Preparing to unpack .../27-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 238s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 238s Selecting previously unselected package libharfbuzz0b:armhf. 238s Preparing to unpack .../28-libharfbuzz0b_10.0.1-1_armhf.deb ... 238s Unpacking libharfbuzz0b:armhf (10.0.1-1) ... 238s Selecting previously unselected package libimagequant0:armhf. 238s Preparing to unpack .../29-libimagequant0_2.18.0-1build1_armhf.deb ... 238s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 238s Selecting previously unselected package libjpeg-turbo8:armhf. 238s Preparing to unpack .../30-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 238s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 238s Selecting previously unselected package libjpeg8:armhf. 238s Preparing to unpack .../31-libjpeg8_8c-2ubuntu11_armhf.deb ... 238s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 238s Selecting previously unselected package libjs-jquery. 238s Preparing to unpack .../32-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 238s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 238s Selecting previously unselected package libjs-jquery-ui. 239s Preparing to unpack .../33-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 239s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 239s Selecting previously unselected package liblapack3:armhf. 239s Preparing to unpack .../34-liblapack3_3.12.0-3build2_armhf.deb ... 239s Unpacking liblapack3:armhf (3.12.0-3build2) ... 239s Selecting previously unselected package liblbfgsb0:armhf. 239s Preparing to unpack .../35-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 239s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 239s Selecting previously unselected package liblcms2-2:armhf. 239s Preparing to unpack .../36-liblcms2-2_2.16-2_armhf.deb ... 239s Unpacking liblcms2-2:armhf (2.16-2) ... 239s Selecting previously unselected package liblerc4:armhf. 239s Preparing to unpack .../37-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 239s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 239s Selecting previously unselected package libqhull-r8.0:armhf. 239s Preparing to unpack .../38-libqhull-r8.0_2020.2-6build1_armhf.deb ... 239s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 239s Selecting previously unselected package libraqm0:armhf. 239s Preparing to unpack .../39-libraqm0_0.10.1-1build1_armhf.deb ... 239s Unpacking libraqm0:armhf (0.10.1-1build1) ... 239s Selecting previously unselected package libsharpyuv0:armhf. 239s Preparing to unpack .../40-libsharpyuv0_1.4.0-0.1_armhf.deb ... 239s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 239s Selecting previously unselected package libjbig0:armhf. 239s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 239s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 239s Selecting previously unselected package libwebp7:armhf. 239s Preparing to unpack .../42-libwebp7_1.4.0-0.1_armhf.deb ... 239s Unpacking libwebp7:armhf (1.4.0-0.1) ... 239s Selecting previously unselected package libtiff6:armhf. 239s Preparing to unpack .../43-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 239s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 239s Selecting previously unselected package libwebpdemux2:armhf. 239s Preparing to unpack .../44-libwebpdemux2_1.4.0-0.1_armhf.deb ... 239s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 239s Selecting previously unselected package libwebpmux3:armhf. 239s Preparing to unpack .../45-libwebpmux3_1.4.0-0.1_armhf.deb ... 239s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 239s Selecting previously unselected package libxslt1.1:armhf. 239s Preparing to unpack .../46-libxslt1.1_1.1.39-0exp1ubuntu1_armhf.deb ... 239s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 239s Selecting previously unselected package python-matplotlib-data. 239s Preparing to unpack .../47-python-matplotlib-data_3.8.3-3_all.deb ... 239s Unpacking python-matplotlib-data (3.8.3-3) ... 239s Selecting previously unselected package python3-appdirs. 239s Preparing to unpack .../48-python3-appdirs_1.4.4-4_all.deb ... 239s Unpacking python3-appdirs (1.4.4-4) ... 239s Selecting previously unselected package python3-numpy. 239s Preparing to unpack .../49-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 239s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 240s Selecting previously unselected package python3.12-tk. 240s Preparing to unpack .../50-python3.12-tk_3.12.7-3_armhf.deb ... 240s Unpacking python3.12-tk (3.12.7-3) ... 240s Selecting previously unselected package python3-tk:armhf. 240s Preparing to unpack .../51-python3-tk_3.12.6-1ubuntu1_armhf.deb ... 240s Unpacking python3-tk:armhf (3.12.6-1ubuntu1) ... 240s Selecting previously unselected package python3-pil.imagetk:armhf. 240s Preparing to unpack .../52-python3-pil.imagetk_10.4.0-1ubuntu1_armhf.deb ... 240s Unpacking python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 240s Selecting previously unselected package libopenjp2-7:armhf. 240s Preparing to unpack .../53-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ... 240s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 240s Selecting previously unselected package python3-pil:armhf. 240s Preparing to unpack .../54-python3-pil_10.4.0-1ubuntu1_armhf.deb ... 240s Unpacking python3-pil:armhf (10.4.0-1ubuntu1) ... 240s Selecting previously unselected package python3-cairo. 240s Preparing to unpack .../55-python3-cairo_1.26.1-2_armhf.deb ... 240s Unpacking python3-cairo (1.26.1-2) ... 240s Selecting previously unselected package python3-freetype. 240s Preparing to unpack .../56-python3-freetype_2.5.1-1_all.deb ... 240s Unpacking python3-freetype (2.5.1-1) ... 240s Selecting previously unselected package python3-rlpycairo. 240s Preparing to unpack .../57-python3-rlpycairo_0.3.0-3_all.deb ... 240s Unpacking python3-rlpycairo (0.3.0-3) ... 240s Selecting previously unselected package python3-reportlab. 240s Preparing to unpack .../58-python3-reportlab_4.2.5-1_all.deb ... 240s Unpacking python3-reportlab (4.2.5-1) ... 240s Selecting previously unselected package xml-core. 240s Preparing to unpack .../59-xml-core_0.19_all.deb ... 240s Unpacking xml-core (0.19) ... 240s Selecting previously unselected package w3c-sgml-lib. 240s Preparing to unpack .../60-w3c-sgml-lib_1.3-3_all.deb ... 240s Unpacking w3c-sgml-lib (1.3-3) ... 240s Selecting previously unselected package python3-biopython. 240s Preparing to unpack .../61-python3-biopython_1.84+dfsg-4_armhf.deb ... 240s Unpacking python3-biopython (1.84+dfsg-4) ... 240s Selecting previously unselected package python3-brotli. 240s Preparing to unpack .../62-python3-brotli_1.1.0-2build2_armhf.deb ... 240s Unpacking python3-brotli (1.1.0-2build2) ... 240s Selecting previously unselected package python3-contourpy. 240s Preparing to unpack .../63-python3-contourpy_1.3.0-2build1_armhf.deb ... 240s Unpacking python3-contourpy (1.3.0-2build1) ... 240s Selecting previously unselected package python3-cycler. 240s Preparing to unpack .../64-python3-cycler_0.12.1-1_all.deb ... 240s Unpacking python3-cycler (0.12.1-1) ... 240s Selecting previously unselected package python3-six. 240s Preparing to unpack .../65-python3-six_1.16.0-7_all.deb ... 240s Unpacking python3-six (1.16.0-7) ... 240s Selecting previously unselected package python3-dateutil. 240s Preparing to unpack .../66-python3-dateutil_2.9.0-2_all.deb ... 240s Unpacking python3-dateutil (2.9.0-2) ... 240s Selecting previously unselected package python3-decorator. 240s Preparing to unpack .../67-python3-decorator_5.1.1-5_all.deb ... 240s Unpacking python3-decorator (5.1.1-5) ... 240s Selecting previously unselected package python3-scipy. 240s Preparing to unpack .../68-python3-scipy_1.13.1-5_armhf.deb ... 240s Unpacking python3-scipy (1.13.1-5) ... 241s Selecting previously unselected package python3-ufolib2. 241s Preparing to unpack .../69-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 241s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 241s Selecting previously unselected package python3-mpmath. 241s Preparing to unpack .../70-python3-mpmath_1.3.0-1_all.deb ... 241s Unpacking python3-mpmath (1.3.0-1) ... 241s Selecting previously unselected package python3-sympy. 241s Preparing to unpack .../71-python3-sympy_1.13.3-1_all.deb ... 241s Unpacking python3-sympy (1.13.3-1) ... 242s Selecting previously unselected package python3-tz. 242s Preparing to unpack .../72-python3-tz_2024.1-2_all.deb ... 242s Unpacking python3-tz (2024.1-2) ... 242s Selecting previously unselected package python3-fs. 242s Preparing to unpack .../73-python3-fs_2.4.16-4_all.deb ... 242s Unpacking python3-fs (2.4.16-4) ... 242s Selecting previously unselected package python3-lxml:armhf. 242s Preparing to unpack .../74-python3-lxml_5.3.0-1_armhf.deb ... 242s Unpacking python3-lxml:armhf (5.3.0-1) ... 242s Selecting previously unselected package python3-lz4. 242s Preparing to unpack .../75-python3-lz4_4.0.2+dfsg-1build4_armhf.deb ... 242s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 242s Selecting previously unselected package python3-unicodedata2. 242s Preparing to unpack .../76-python3-unicodedata2_15.1.0+ds-1build2_armhf.deb ... 242s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ... 242s Selecting previously unselected package unicode-data. 242s Preparing to unpack .../77-unicode-data_15.1.0-1_all.deb ... 242s Unpacking unicode-data (15.1.0-1) ... 242s Selecting previously unselected package python3-fonttools. 242s Preparing to unpack .../78-python3-fonttools_4.46.0-1build2_armhf.deb ... 242s Unpacking python3-fonttools (4.46.0-1build2) ... 242s Selecting previously unselected package python3-joblib. 242s Preparing to unpack .../79-python3-joblib_1.3.2-5_all.deb ... 242s Unpacking python3-joblib (1.3.2-5) ... 242s Selecting previously unselected package python3-kiwisolver. 242s Preparing to unpack .../80-python3-kiwisolver_1.4.7-2build1_armhf.deb ... 242s Unpacking python3-kiwisolver (1.4.7-2build1) ... 242s Selecting previously unselected package python3-packaging. 242s Preparing to unpack .../81-python3-packaging_24.1-1_all.deb ... 242s Unpacking python3-packaging (24.1-1) ... 242s Selecting previously unselected package python3-matplotlib. 242s Preparing to unpack .../82-python3-matplotlib_3.8.3-3_armhf.deb ... 242s Unpacking python3-matplotlib (3.8.3-3) ... 242s Selecting previously unselected package python3-nanoget-examples. 242s Preparing to unpack .../83-python3-nanoget-examples_1.19.3-1_all.deb ... 242s Unpacking python3-nanoget-examples (1.19.3-1) ... 243s Selecting previously unselected package python3-pandas-lib:armhf. 243s Preparing to unpack .../84-python3-pandas-lib_2.2.3+dfsg-5_armhf.deb ... 243s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-5) ... 243s Selecting previously unselected package python3-pandas. 243s Preparing to unpack .../85-python3-pandas_2.2.3+dfsg-5_all.deb ... 243s Unpacking python3-pandas (2.2.3+dfsg-5) ... 243s Selecting previously unselected package python3-threadpoolctl. 243s Preparing to unpack .../86-python3-threadpoolctl_3.1.0-1_all.deb ... 243s Unpacking python3-threadpoolctl (3.1.0-1) ... 243s Selecting previously unselected package python3-sklearn-lib:armhf. 243s Preparing to unpack .../87-python3-sklearn-lib_1.4.2+dfsg-6build1_armhf.deb ... 243s Unpacking python3-sklearn-lib:armhf (1.4.2+dfsg-6build1) ... 243s Selecting previously unselected package python3-sklearn. 243s Preparing to unpack .../88-python3-sklearn_1.4.2+dfsg-6build1_all.deb ... 243s Unpacking python3-sklearn (1.4.2+dfsg-6build1) ... 243s Selecting previously unselected package python3-pauvre. 244s Preparing to unpack .../89-python3-pauvre_0.2.3-4_all.deb ... 244s Unpacking python3-pauvre (0.2.3-4) ... 244s Selecting previously unselected package autopkgtest-satdep. 244s Preparing to unpack .../90-1-autopkgtest-satdep.deb ... 244s Unpacking autopkgtest-satdep (0) ... 244s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 244s Setting up liblcms2-2:armhf (2.16-2) ... 244s Setting up libpixman-1-0:armhf (0.44.0-3) ... 244s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 244s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 244s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 244s Setting up python3-joblib (1.3.2-5) ... 244s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 244s Setting up libxcb-render0:armhf (1.17.0-2) ... 244s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ... 244s Setting up fonts-lyx (2.4.2.1-1) ... 244s Setting up python3-threadpoolctl (3.1.0-1) ... 244s Setting up x11-common (1:7.7+23ubuntu3) ... 244s Setting up libdeflate0:armhf (1.22-1) ... 244s Setting up libqhull-r8.0:armhf (2020.2-6build1) ... 244s Setting up libxcb-shm0:armhf (1.17.0-2) ... 244s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 244s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 244s Setting up python3-tz (2024.1-2) ... 245s Setting up unicode-data (15.1.0-1) ... 245s Setting up python3-six (1.16.0-7) ... 245s Setting up python3-decorator (5.1.1-5) ... 245s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 245s Setting up libblas3:armhf (3.12.0-3build2) ... 245s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 245s Setting up python3-packaging (24.1-1) ... 245s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 245s Setting up python3-brotli (1.1.0-2build2) ... 245s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 245s Setting up python3-cycler (0.12.1-1) ... 245s Setting up libimagequant0:armhf (2.18.0-1build1) ... 245s Setting up fonts-dejavu-mono (2.37-8) ... 245s Setting up python3-kiwisolver (1.4.7-2build1) ... 245s Setting up libtcl8.6:armhf (8.6.15+dfsg-2) ... 245s Setting up fonts-dejavu-core (2.37-8) ... 245s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 245s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 245s Setting up libwebp7:armhf (1.4.0-0.1) ... 245s Setting up libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 245s Setting up python3-nanoget-examples (1.19.3-1) ... 245s Setting up libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 245s Setting up libharfbuzz0b:armhf (10.0.1-1) ... 245s Setting up python3-dateutil (2.9.0-2) ... 246s Setting up sgml-base (1.31) ... 246s Setting up libxss1:armhf (1:1.2.3-1build3) ... 246s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 246s Setting up python3-mpmath (1.3.0-1) ... 246s Setting up python-matplotlib-data (3.8.3-3) ... 246s Setting up libwebpmux3:armhf (1.4.0-0.1) ... 246s Setting up python3-appdirs (1.4.4-4) ... 246s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 246s Setting up python3-sympy (1.13.3-1) ... 254s Setting up liblapack3:armhf (3.12.0-3build2) ... 254s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 254s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 254s Setting up libwebpdemux2:armhf (1.4.0-0.1) ... 254s Setting up python3-freetype (2.5.1-1) ... 254s Setting up xfonts-utils (1:7.7+7) ... 254s Setting up python3-fs (2.4.16-4) ... 254s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 254s Setting up libraqm0:armhf (0.10.1-1build1) ... 254s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 257s Setting up python3-lxml:armhf (5.3.0-1) ... 257s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 257s Setting up xml-core (0.19) ... 257s Setting up python3-contourpy (1.3.0-2build1) ... 257s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 257s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 257s Setting up libxft2:armhf (2.3.6-1build1) ... 257s Setting up python3-scipy (1.13.1-5) ... 261s Setting up libtk8.6:armhf (8.6.15-1) ... 261s Setting up python3-pandas-lib:armhf (2.2.3+dfsg-5) ... 261s Setting up python3.12-tk (3.12.7-3) ... 261s Setting up python3-sklearn-lib:armhf (1.4.2+dfsg-6build1) ... 261s Setting up fonts-urw-base35 (20200910-8) ... 262s Setting up libcairo2:armhf (1.18.2-2) ... 262s Setting up python3-pil:armhf (10.4.0-1ubuntu1) ... 262s Setting up python3-pandas (2.2.3+dfsg-5) ... 268s Setting up python3-sklearn (1.4.2+dfsg-6build1) ... 270s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 270s Setting up python3-cairo (1.26.1-2) ... 270s Setting up blt (2.5.3+dfsg-7build1) ... 270s Setting up python3-tk:armhf (3.12.6-1ubuntu1) ... 270s Setting up python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 271s Setting up python3-rlpycairo (0.3.0-3) ... 271s Setting up python3-reportlab (4.2.5-1) ... 272s Setting up python3-fonttools (4.46.0-1build2) ... 273s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 273s Setting up python3-matplotlib (3.8.3-3) ... 275s Processing triggers for libc-bin (2.40-1ubuntu3) ... 275s Processing triggers for man-db (2.13.0-1) ... 276s Processing triggers for sgml-base (1.31) ... 276s Setting up w3c-sgml-lib (1.3-3) ... 305s Setting up python3-biopython (1.84+dfsg-4) ... 307s Setting up python3-pauvre (0.2.3-4) ... 307s Setting up autopkgtest-satdep (0) ... 325s (Reading database ... 71430 files and directories currently installed.) 325s Removing autopkgtest-satdep (0) ... 330s autopkgtest [20:28:59]: test run-unit-test: [----------------------- 332s 332s #git clone https://github.com/wdecoster/nanotest.git 332s 332s pauvre -h 332s usage: pauvre [-h] [-v] 332s {browser,custommargin,marginplot,redwood,stats,synplot} ... 332s 332s options: 332s -h, --help show this help message and exit 332s -v, --version Installed pauvre version 332s 332s [sub-commands]: 332s {browser,custommargin,marginplot,redwood,stats,synplot} 332s browser an adaptable genome browser with various track types 332s custommargin plot custom marginal histograms of tab-delimited files 332s marginplot plot a marginal histogram of a fastq file 332s redwood make a redwood plot from a bam file 332s stats outputs stats from a fastq file 332s synplot make a synteny plot from a gff file, protein 332s alignment, and partition file 332s 332s pauvre marginplot -h 332s usage: pauvre marginplot [-h] [-q] [--dpi dpi] [-f FASTQ] 332s [--fileform STRING [STRING ...]] 332s [--filt_maxlen FILT_MAXLEN] 332s [--filt_maxqual FILT_MAXQUAL] 332s [--filt_minlen FILT_MINLEN] 332s [--filt_minqual FILT_MINQUAL] [--kmerdf KMERDF] [-n] 332s [--no_timestamp] [-o BASENAME] 332s [--plot_maxlen PLOT_MAXLEN] 332s [--plot_maxqual PLOT_MAXQUAL] 332s [--plot_minlen PLOT_MINLEN] 332s [--plot_minqual PLOT_MINQUAL] [--lengthbin LENGTHBIN] 332s [--qualbin QUALBIN] [-t TITLE] [-y] 332s 332s options: 332s -h, --help show this help message and exit 332s -q, --quiet Do not output warnings to stderr 332s --dpi dpi Change the dpi from the default 600 if you need it 332s higher 332s -f FASTQ, --fastq FASTQ 332s The input FASTQ file. 332s --fileform STRING [STRING ...] 332s Which output format would you like? Def.=png 332s --filt_maxlen FILT_MAXLEN 332s This sets the max read length filter reads. 332s --filt_maxqual FILT_MAXQUAL 332s This sets the max mean read quality to filter reads. 332s --filt_minlen FILT_MINLEN 332s This sets the min read length to filter reads. 332s --filt_minqual FILT_MINQUAL 332s This sets the min mean read quality to filter reads. 332s --kmerdf KMERDF Pass the filename of a data matrix if you would like 332s to plot read length versus number of kmers in that 332s read. The data matrix is a tab-separated text file 332s with columns "id length numks and kmers", where: 332s = read id = the length of the read = 332s the number of canonical kmers in the read = a 332s list representation of kmers ie ['GAT', 'GTA'] 332s -n, --no_transparent Specify this option if you don't want a transparent 332s background. Default is on. 332s --no_timestamp Turn off time stamps in the filename output. 332s -o BASENAME, --output_base_name BASENAME 332s Specify a base name for the output file(s). The input 332s file base name is the default. 332s --plot_maxlen PLOT_MAXLEN 332s Sets the maximum viewing area in the length dimension. 332s --plot_maxqual PLOT_MAXQUAL 332s Sets the maximum viewing area in the quality 332s dimension. 332s --plot_minlen PLOT_MINLEN 332s Sets the minimum viewing area in the length dimension. 332s --plot_minqual PLOT_MINQUAL 332s Sets the minimum viewing area in the quality 332s dimension. 332s --lengthbin LENGTHBIN 332s This sets the bin size to use for length. 332s --qualbin QUALBIN This sets the bin size to use for quality 332s -t TITLE, --title TITLE 332s This sets the title for the whole plot. Use --title 332s "Crustacean's DNA read quality" if you need single 332s quote or apostrophe inside title. 332s -y, --add-yaxes Add Y-axes to both marginal histograms. 332s pauvre marginplot -f nanotest/reads.fastq.gz 335s Keeping reads that satisfy: length >= 0 and meanQual >= 0 336s # Fastq stats for reads.fastq.gz, reads >= 0bp 336s numReads: 371 336s %totalNumReads: 100.00 336s numBasepairs: 8611871 336s %totalBasepairs: 100.00 336s meanLen: 23212.590296495957 336s medianLen: 9390.0 336s minLen: 212 336s maxLen: 393431 336s N50: 60395 336s L50: 36 336s 336s # Fastq stats for reads.fastq.gz, reads >= 1000bp 336s numReads: 349 336s %totalNumReads: 94.07 336s numBasepairs: 8599196 336s %totalBasepairs: 99.85 336s meanLen: 24639.530085959886 336s medianLen: 10585.0 336s minLen: 1009 336s maxLen: 393431 336s N50: 60395 336s L50: 36 336s 336s # Fastq stats for reads.fastq.gz, reads >= 5000bp 336s numReads: 246 336s %totalNumReads: 66.31 336s numBasepairs: 8296771 336s %totalBasepairs: 96.34 336s meanLen: 33726.71138211382 336s medianLen: 17146.0 336s minLen: 5082 336s maxLen: 393431 336s N50: 61111 336s L50: 33 336s 336s # Fastq stats for reads.fastq.gz, reads >= 10000bp 336s numReads: 178 336s %totalNumReads: 47.98 336s numBasepairs: 7817574 336s %totalBasepairs: 90.78 336s meanLen: 43918.95505617977 336s medianLen: 25216.5 336s minLen: 10192 336s maxLen: 393431 336s N50: 67193 336s L50: 30 336s 336s 336s Basepairs >= bin by mean PHRED and length 336s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 336s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 336s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 336s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 336s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 336s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 336s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 336s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 336s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 336s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 336s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 336s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 336s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 336s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 336s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 336s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 336s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 336s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 336s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 336s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 336s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 336s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 336s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 336s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 336s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 336s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 336s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 336s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 336s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 336s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 336s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 336s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 336s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 336s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 336s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 336s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 336s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 336s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 336s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 336s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 336s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 336s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 336s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 336s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 336s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 336s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 336s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 336s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 336s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 336s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 336s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 336s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 336s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 336s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 336s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 336s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 336s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 336s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 336s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 336s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 336s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 336s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 336s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 336s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 336s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 336s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 336s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 336s 140000 1699582 1699582 1378920 930176 341725 0 0 0 336s 160000 1699582 1699582 1378920 930176 341725 0 0 0 336s 180000 1699582 1699582 1378920 930176 341725 0 0 0 336s 200000 1504562 1504562 1183900 735156 341725 0 0 0 336s 220000 1504562 1504562 1183900 735156 341725 0 0 0 336s 240000 1055818 1055818 735156 735156 341725 0 0 0 336s 260000 1055818 1055818 735156 735156 341725 0 0 0 336s 280000 1055818 1055818 735156 735156 341725 0 0 0 336s 300000 1055818 1055818 735156 735156 341725 0 0 0 336s 320000 1055818 1055818 735156 735156 341725 0 0 0 336s 340000 735156 735156 735156 735156 341725 0 0 0 336s 360000 393431 393431 393431 393431 0 0 0 0 336s 380000 393431 393431 393431 393431 0 0 0 0 336s 400000 0 0 0 0 0 0 0 0 336s 336s Number of reads >= bin by mean Phred+Len 336s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 336s 0 371 321 277 207 114 49 2 0 336s 250 369 320 276 206 113 48 2 0 336s 500 363 315 273 203 112 47 2 0 336s 750 355 311 270 201 111 46 2 0 336s 1000 349 307 266 197 108 44 2 0 336s 1500 341 302 263 194 106 44 2 0 336s 2000 322 284 245 179 98 42 2 0 336s 2500 308 271 233 172 94 40 2 0 336s 3000 296 264 227 167 93 40 2 0 336s 3500 282 251 215 156 84 36 2 0 336s 4000 268 237 201 144 79 36 2 0 336s 4500 256 226 192 140 77 34 2 0 336s 5000 246 216 184 134 73 33 2 0 336s 5500 236 208 176 130 72 32 1 0 336s 6000 226 199 167 121 68 30 1 0 336s 6500 215 190 160 115 65 28 0 0 336s 7000 209 185 156 113 64 28 0 0 336s 7500 203 179 151 110 62 26 0 0 336s 8000 197 174 146 106 59 25 0 0 336s 8500 191 170 142 103 57 25 0 0 336s 9000 188 167 140 101 56 24 0 0 336s 9500 182 161 137 100 55 24 0 0 336s 10000 178 157 135 99 54 24 0 0 336s 11000 169 150 129 94 51 24 0 0 336s 12000 160 142 122 90 48 22 0 0 336s 13000 144 128 111 84 46 21 0 0 336s 14000 138 123 107 80 44 19 0 0 336s 15000 134 119 103 76 41 18 0 0 336s 16000 130 116 100 74 41 18 0 0 336s 17000 123 109 94 69 38 17 0 0 336s 18000 119 105 90 65 34 16 0 0 336s 19000 115 102 87 63 33 15 0 0 336s 20000 111 98 84 61 33 15 0 0 336s 21000 105 93 80 58 30 13 0 0 336s 22000 100 90 77 56 28 12 0 0 336s 23000 96 86 73 53 26 11 0 0 336s 24000 94 84 71 51 26 11 0 0 336s 25000 90 80 68 49 25 11 0 0 336s 26000 88 78 67 49 25 11 0 0 336s 27000 84 74 64 47 23 10 0 0 336s 28000 81 71 61 46 22 9 0 0 336s 29000 76 66 57 42 21 8 0 0 336s 30000 71 61 52 38 20 8 0 0 336s 31000 69 59 50 36 19 7 0 0 336s 32000 67 57 48 34 18 7 0 0 336s 33000 66 56 47 33 18 7 0 0 336s 34000 66 56 47 33 18 7 0 0 336s 35000 64 55 46 32 18 7 0 0 336s 36000 61 52 45 31 18 7 0 0 336s 37000 58 49 44 30 17 7 0 0 336s 38000 58 49 44 30 17 7 0 0 336s 39000 57 49 44 30 17 7 0 0 336s 40000 57 49 44 30 17 7 0 0 336s 45000 52 46 42 29 17 7 0 0 336s 50000 47 42 38 25 16 6 0 0 336s 55000 43 38 34 21 13 4 0 0 336s 60000 36 31 28 18 10 3 0 0 336s 65000 32 28 25 16 9 2 0 0 336s 70000 28 25 23 14 9 2 0 0 336s 75000 23 21 19 12 7 2 0 0 336s 80000 21 19 18 11 7 2 0 0 336s 85000 20 18 17 11 7 2 0 0 336s 90000 17 16 15 10 6 2 0 0 336s 95000 17 16 15 10 6 2 0 0 336s 100000 14 13 12 8 4 1 0 0 336s 120000 10 9 8 5 2 0 0 0 336s 140000 6 6 5 3 1 0 0 0 336s 160000 6 6 5 3 1 0 0 0 336s 180000 6 6 5 3 1 0 0 0 336s 200000 5 5 4 2 1 0 0 0 336s 220000 5 5 4 2 1 0 0 0 336s 240000 3 3 2 2 1 0 0 0 336s 260000 3 3 2 2 1 0 0 0 336s 280000 3 3 2 2 1 0 0 0 336s 300000 3 3 2 2 1 0 0 0 336s 320000 3 3 2 2 1 0 0 0 336s 340000 2 2 2 2 1 0 0 0 336s 360000 1 1 1 1 0 0 0 0 336s 380000 1 1 1 1 0 0 0 0 336s 400000 0 0 0 0 0 0 0 0 337s plotting in the following window: 337s 0 <= Q-score (x-axis) <= 14.0 337s 0 <= length (y-axis) <= 223383 338s 338s pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000 340s Keeping reads that satisfy: length >= 0 and meanQual >= 0 and length <= 30000 342s plotting in the following window: 342s 0 <= Q-score (x-axis) <= 14.0 342s 0 <= length (y-axis) <= 29294 342s # Fastq stats for reads.fastq.gz, reads >= 0bp 342s numReads: 300 342s %totalNumReads: 100.00 342s numBasepairs: 2729844 342s %totalBasepairs: 100.00 342s meanLen: 9099.48 342s medianLen: 6204.5 342s minLen: 212 342s maxLen: 29590 342s N50: 15222 342s L50: 61 342s 342s # Fastq stats for reads.fastq.gz, reads >= 1000bp 342s numReads: 278 342s %totalNumReads: 92.67 342s numBasepairs: 2717169 342s %totalBasepairs: 99.54 342s meanLen: 9773.989208633093 342s medianLen: 6910.0 342s minLen: 1009 342s maxLen: 29590 342s N50: 15222 342s L50: 61 342s 342s # Fastq stats for reads.fastq.gz, reads >= 5000bp 342s numReads: 175 342s %totalNumReads: 58.33 342s numBasepairs: 2414744 342s %totalBasepairs: 88.46 342s meanLen: 13798.537142857143 342s medianLen: 12063.0 342s minLen: 5082 342s maxLen: 29590 342s N50: 17307 342s L50: 52 342s 342s # Fastq stats for reads.fastq.gz, reads >= 10000bp 342s numReads: 107 342s %totalNumReads: 35.67 342s numBasepairs: 1935547 342s %totalBasepairs: 70.90 342s meanLen: 18089.22429906542 342s medianLen: 16881.0 342s minLen: 10192 342s maxLen: 29590 342s N50: 20295 342s L50: 39 342s 342s 342s Basepairs >= bin by mean PHRED and length 342s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 342s 0 2729844 2468957 2119643 1556484 858972 393665 11781 0 342s 250 2729407 2468745 2119431 1556272 858760 393453 11781 0 342s 500 2726928 2466658 2118130 1554971 858291 392984 11781 0 342s 750 2721984 2464209 2116192 1553563 857617 392310 11781 0 342s 1000 2717169 2460965 2112948 1550319 855138 390635 11781 0 342s 1500 2707362 2454822 2109268 1546639 852794 390635 11781 0 342s 2000 2672887 2422266 2076712 1519238 838240 387346 11781 0 342s 2500 2641814 2393384 2050243 1503478 829208 382949 11781 0 342s 3000 2609116 2374168 2033904 1489726 826376 382949 11781 0 342s 3500 2564269 2332442 1995335 1454265 797280 370584 11781 0 342s 4000 2512068 2280241 1943134 1409238 778266 370584 11781 0 342s 4500 2462190 2234445 1905756 1392691 769886 362204 11781 0 342s 5000 2414744 2186999 1867774 1364464 750909 357457 11781 0 342s 5500 2362072 2144943 1825718 1343414 745461 352009 6333 0 342s 6000 2305333 2093889 1774664 1292360 722519 340437 6333 0 342s 6500 2236325 2037511 1730586 1254474 703348 327653 0 0 342s 7000 2195737 2003551 1703356 1240708 696434 327653 0 0 342s 7500 2152591 1960405 1667528 1219336 682352 313571 0 0 342s 8000 2106380 1921709 1628832 1188281 658986 305742 0 0 342s 8500 2056889 1888763 1595886 1163795 642742 305742 0 0 342s 9000 2030952 1862826 1578483 1146392 633884 296884 0 0 342s 9500 1974999 1806873 1550171 1136895 624387 296884 0 0 342s 10000 1935547 1767421 1530498 1126915 614407 296884 0 0 342s 11000 1840006 1693127 1467100 1074138 582873 296884 0 0 342s 12000 1736297 1600554 1386518 1027634 547567 273563 0 0 342s 13000 1534978 1424405 1249051 952931 523214 261500 0 0 342s 14000 1453681 1356704 1195131 899011 495787 234073 0 0 342s 15000 1395434 1298457 1136884 840764 451857 219542 0 0 342s 16000 1334255 1252372 1090799 809901 451857 219542 0 0 342s 17000 1217331 1135448 990860 726799 401685 202825 0 0 342s 18000 1146730 1064847 920259 656198 331084 185250 0 0 342s 19000 1072466 1008770 864182 618776 312433 166599 0 0 342s 20000 993686 929990 805391 579331 312433 166599 0 0 342s 21000 870897 827698 723394 518156 251258 126075 0 0 342s 22000 763379 763379 659075 475682 208784 104960 0 0 342s 23000 673728 673728 569424 408210 163731 82719 0 0 342s 24000 627024 627024 522720 361506 163731 82719 0 0 342s 25000 528646 528646 448453 312153 138944 82719 0 0 342s 26000 478213 478213 423121 312153 138944 82719 0 0 342s 27000 372570 372570 343949 259378 86169 56621 0 0 342s 28000 289458 289458 260837 231544 58335 28787 0 0 342s 29000 147115 147115 147115 117822 29548 0 0 0 342s 30000 0 0 0 0 0 0 0 0 342s 342s Number of reads >= bin by mean Phred+Len 342s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 342s 0 300 260 225 169 94 41 2 0 342s 250 298 259 224 168 93 40 2 0 342s 500 292 254 221 165 92 39 2 0 342s 750 284 250 218 163 91 38 2 0 342s 1000 278 246 214 159 88 36 2 0 342s 1500 270 241 211 156 86 36 2 0 342s 2000 251 223 193 141 78 34 2 0 342s 2500 237 210 181 134 74 32 2 0 342s 3000 225 203 175 129 73 32 2 0 342s 3500 211 190 163 118 64 28 2 0 342s 4000 197 176 149 106 59 28 2 0 342s 4500 185 165 140 102 57 26 2 0 342s 5000 175 155 132 96 53 25 2 0 342s 5500 165 147 124 92 52 24 1 0 342s 6000 155 138 115 83 48 22 1 0 342s 6500 144 129 108 77 45 20 0 0 342s 7000 138 124 104 75 44 20 0 0 342s 7500 132 118 99 72 42 18 0 0 342s 8000 126 113 94 68 39 17 0 0 342s 8500 120 109 90 65 37 17 0 0 342s 9000 117 106 88 63 36 16 0 0 342s 9500 111 100 85 62 35 16 0 0 342s 10000 107 96 83 61 34 16 0 0 342s 11000 98 89 77 56 31 16 0 0 342s 12000 89 81 70 52 28 14 0 0 342s 13000 73 67 59 46 26 13 0 0 342s 14000 67 62 55 42 24 11 0 0 342s 15000 63 58 51 38 21 10 0 0 342s 16000 59 55 48 36 21 10 0 0 342s 17000 52 48 42 31 18 9 0 0 342s 18000 48 44 38 27 14 8 0 0 342s 19000 44 41 35 25 13 7 0 0 342s 20000 40 37 32 23 13 7 0 0 342s 21000 34 32 28 20 10 5 0 0 342s 22000 29 29 25 18 8 4 0 0 342s 23000 25 25 21 15 6 3 0 0 342s 24000 23 23 19 13 6 3 0 0 342s 25000 19 19 16 11 5 3 0 0 342s 26000 17 17 15 11 5 3 0 0 342s 27000 13 13 12 9 3 2 0 0 342s 28000 10 10 9 8 2 1 0 0 342s 29000 5 5 5 4 1 0 0 0 342s 30000 0 0 0 0 0 0 0 0 342s 343s pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg 345s Keeping reads that satisfy: length >= 0 and meanQual >= 7.0 346s # Fastq stats for reads.fastq.gz, reads >= 0bp 346s numReads: 371 346s %totalNumReads: 100.00 346s numBasepairs: 8611871 346s %totalBasepairs: 100.00 346s meanLen: 23212.590296495957 346s medianLen: 9390.0 346s minLen: 212 346s maxLen: 393431 346s N50: 60395 346s L50: 36 346s 346s # Fastq stats for reads.fastq.gz, reads >= 1000bp 346s numReads: 349 346s %totalNumReads: 94.07 346s numBasepairs: 8599196 346s %totalBasepairs: 99.85 346s meanLen: 24639.530085959886 346s medianLen: 10585.0 346s minLen: 1009 346s maxLen: 393431 346s N50: 60395 346s L50: 36 346s 346s # Fastq stats for reads.fastq.gz, reads >= 5000bp 346s numReads: 246 346s %totalNumReads: 66.31 346s numBasepairs: 8296771 346s %totalBasepairs: 96.34 346s meanLen: 33726.71138211382 346s medianLen: 17146.0 346s minLen: 5082 346s maxLen: 393431 346s N50: 61111 346s L50: 33 346s 346s # Fastq stats for reads.fastq.gz, reads >= 10000bp 346s numReads: 178 346s %totalNumReads: 47.98 346s numBasepairs: 7817574 346s %totalBasepairs: 90.78 346s meanLen: 43918.95505617977 346s medianLen: 25216.5 346s minLen: 10192 346s maxLen: 393431 346s N50: 67193 346s L50: 30 346s 346s 346s Basepairs >= bin by mean PHRED and length 346s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 346s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 346s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 346s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 346s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 346s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 346s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 346s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 346s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 346s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 346s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 346s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 346s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 346s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 346s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 346s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 346s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 346s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 346s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 346s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 346s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 346s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 346s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 346s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 346s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 346s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 346s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 346s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 346s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 346s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 346s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 346s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 346s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 346s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 346s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 346s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 346s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 346s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 346s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 346s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 346s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 346s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 346s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 346s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 346s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 346s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 346s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 346s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 346s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 346s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 346s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 346s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 346s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 346s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 346s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 346s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 346s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 346s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 346s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 346s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 346s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 346s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 346s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 346s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 346s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 346s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 346s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 346s 140000 1699582 1699582 1378920 930176 341725 0 0 0 346s 160000 1699582 1699582 1378920 930176 341725 0 0 0 346s 180000 1699582 1699582 1378920 930176 341725 0 0 0 346s 200000 1504562 1504562 1183900 735156 341725 0 0 0 346s 220000 1504562 1504562 1183900 735156 341725 0 0 0 346s 240000 1055818 1055818 735156 735156 341725 0 0 0 346s 260000 1055818 1055818 735156 735156 341725 0 0 0 346s 280000 1055818 1055818 735156 735156 341725 0 0 0 346s 300000 1055818 1055818 735156 735156 341725 0 0 0 346s 320000 1055818 1055818 735156 735156 341725 0 0 0 346s 340000 735156 735156 735156 735156 341725 0 0 0 346s 360000 393431 393431 393431 393431 0 0 0 0 346s 380000 393431 393431 393431 393431 0 0 0 0 346s 400000 0 0 0 0 0 0 0 0 346s 346s Number of reads >= bin by mean Phred+Len 346s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 346s 0 371 321 277 207 114 49 2 0 346s 250 369 320 276 206 113 48 2 0 346s 500 363 315 273 203 112 47 2 0 346s 750 355 311 270 201 111 46 2 0 346s 1000 349 307 266 197 108 44 2 0 346s 1500 341 302 263 194 106 44 2 0 346s 2000 322 284 245 179 98 42 2 0 346s 2500 308 271 233 172 94 40 2 0 346s 3000 296 264 227 167 93 40 2 0 346s 3500 282 251 215 156 84 36 2 0 346s 4000 268 237 201 144 79 36 2 0 346s 4500 256 226 192 140 77 34 2 0 346s 5000 246 216 184 134 73 33 2 0 346s 5500 236 208 176 130 72 32 1 0 346s 6000 226 199 167 121 68 30 1 0 346s 6500 215 190 160 115 65 28 0 0 346s 7000 209 185 156 113 64 28 0 0 346s 7500 203 179 151 110 62 26 0 0 346s 8000 197 174 146 106 59 25 0 0 346s 8500 191 170 142 103 57 25 0 0 346s 9000 188 167 140 101 56 24 0 0 346s 9500 182 161 137 100 55 24 0 0 346s 10000 178 157 135 99 54 24 0 0 346s 11000 169 150 129 94 51 24 0 0 346s 12000 160 142 122 90 48 22 0 0 346s 13000 144 128 111 84 46 21 0 0 346s 14000 138 123 107 80 44 19 0 0 346s 15000 134 119 103 76 41 18 0 0 346s 16000 130 116 100 74 41 18 0 0 346s 17000 123 109 94 69 38 17 0 0 346s 18000 119 105 90 65 34 16 0 0 346s 19000 115 102 87 63 33 15 0 0 346s 20000 111 98 84 61 33 15 0 0 346s 21000 105 93 80 58 30 13 0 0 346s 22000 100 90 77 56 28 12 0 0 346s 23000 96 86 73 53 26 11 0 0 346s 24000 94 84 71 51 26 11 0 0 346s 25000 90 80 68 49 25 11 0 0 346s 26000 88 78 67 49 25 11 0 0 346s 27000 84 74 64 47 23 10 0 0 346s 28000 81 71 61 46 22 9 0 0 346s 29000 76 66 57 42 21 8 0 0 346s 30000 71 61 52 38 20 8 0 0 346s 31000 69 59 50 36 19 7 0 0 346s 32000 67 57 48 34 18 7 0 0 346s 33000 66 56 47 33 18 7 0 0 346s 34000 66 56 47 33 18 7 0 0 346s 35000 64 55 46 32 18 7 0 0 346s 36000 61 52 45 31 18 7 0 0 346s 37000 58 49 44 30 17 7 0 0 346s 38000 58 49 44 30 17 7 0 0 346s 39000 57 49 44 30 17 7 0 0 346s 40000 57 49 44 30 17 7 0 0 346s 45000 52 46 42 29 17 7 0 0 346s 50000 47 42 38 25 16 6 0 0 346s 55000 43 38 34 21 13 4 0 0 346s 60000 36 31 28 18 10 3 0 0 346s 65000 32 28 25 16 9 2 0 0 346s 70000 28 25 23 14 9 2 0 0 346s 75000 23 21 19 12 7 2 0 0 346s 80000 21 19 18 11 7 2 0 0 346s 85000 20 18 17 11 7 2 0 0 346s 90000 17 16 15 10 6 2 0 0 346s 95000 17 16 15 10 6 2 0 0 346s 100000 14 13 12 8 4 1 0 0 346s 120000 10 9 8 5 2 0 0 0 346s 140000 6 6 5 3 1 0 0 0 346s 160000 6 6 5 3 1 0 0 0 346s 180000 6 6 5 3 1 0 0 0 346s 200000 5 5 4 2 1 0 0 0 346s 220000 5 5 4 2 1 0 0 0 346s 240000 3 3 2 2 1 0 0 0 346s 260000 3 3 2 2 1 0 0 0 346s 280000 3 3 2 2 1 0 0 0 346s 300000 3 3 2 2 1 0 0 0 346s 320000 3 3 2 2 1 0 0 0 346s 340000 2 2 2 2 1 0 0 0 346s 360000 1 1 1 1 0 0 0 0 346s 380000 1 1 1 1 0 0 0 0 346s 400000 0 0 0 0 0 0 0 0 346s plotting in the following window: 346s 0 <= Q-score (x-axis) <= 14.0 346s 0 <= length (y-axis) <= 223383 347s 347s 347s pauvre stats -h 347s usage: pauvre stats [-h] [-q] [-f FASTQ] [-H] [--filt_maxlen FILT_MAXLEN] 347s [--filt_maxqual FILT_MAXQUAL] [--filt_minlen FILT_MINLEN] 347s [--filt_minqual FILT_MINQUAL] 347s 347s options: 347s -h, --help show this help message and exit 347s -q, --quiet Do not output warnings to stderr 347s -f FASTQ, --fastq FASTQ 347s The input FASTQ file. 347s -H, --histogram Make a histogram of the read lengths and saves it to a 347s new file 347s --filt_maxlen FILT_MAXLEN 347s This sets the max read length filter reads. 347s --filt_maxqual FILT_MAXQUAL 347s This sets the max mean read quality to filter reads. 347s --filt_minlen FILT_MINLEN 347s This sets the min read length to filter reads. 347s --filt_minqual FILT_MINQUAL 347s This sets the min mean read quality to filter reads. 347s pauvre stats -f nanotest/reads.fastq.gz 350s # Fastq stats for reads.fastq.gz, reads >= 0bp 350s numReads: 371 350s %totalNumReads: 100.00 350s numBasepairs: 8611871 350s %totalBasepairs: 100.00 350s meanLen: 23212.590296495957 350s medianLen: 9390.0 350s minLen: 212 350s maxLen: 393431 350s N50: 60395 350s L50: 36 350s 350s # Fastq stats for reads.fastq.gz, reads >= 1000bp 350s numReads: 349 350s %totalNumReads: 94.07 350s numBasepairs: 8599196 350s %totalBasepairs: 99.85 350s meanLen: 24639.530085959886 350s medianLen: 10585.0 350s minLen: 1009 350s maxLen: 393431 350s N50: 60395 350s L50: 36 350s 350s # Fastq stats for reads.fastq.gz, reads >= 5000bp 350s numReads: 246 350s %totalNumReads: 66.31 350s numBasepairs: 8296771 350s %totalBasepairs: 96.34 350s meanLen: 33726.71138211382 350s medianLen: 17146.0 350s minLen: 5082 350s maxLen: 393431 350s N50: 61111 350s L50: 33 350s 350s # Fastq stats for reads.fastq.gz, reads >= 10000bp 350s numReads: 178 350s %totalNumReads: 47.98 350s numBasepairs: 7817574 350s %totalBasepairs: 90.78 350s meanLen: 43918.95505617977 350s medianLen: 25216.5 350s minLen: 10192 350s maxLen: 393431 350s N50: 67193 350s L50: 30 350s 350s 350s Basepairs >= bin by mean PHRED and length 350s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 350s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 350s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 350s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 350s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 350s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 350s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 350s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 350s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 350s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 350s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 350s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 350s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 350s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 350s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 350s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 350s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 350s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 350s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 350s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 350s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 350s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 350s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 350s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 350s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 350s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 350s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 350s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 350s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 350s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 350s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 350s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 350s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 350s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 350s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 350s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 350s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 350s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 350s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 350s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 350s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 350s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 350s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 350s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 350s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 350s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 350s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 350s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 350s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 350s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 350s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 350s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 350s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 350s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 350s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 350s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 350s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 350s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 350s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 350s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 350s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 350s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 350s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 350s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 350s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 350s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 350s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 350s 140000 1699582 1699582 1378920 930176 341725 0 0 0 350s 160000 1699582 1699582 1378920 930176 341725 0 0 0 350s 180000 1699582 1699582 1378920 930176 341725 0 0 0 350s 200000 1504562 1504562 1183900 735156 341725 0 0 0 350s 220000 1504562 1504562 1183900 735156 341725 0 0 0 350s 240000 1055818 1055818 735156 735156 341725 0 0 0 350s 260000 1055818 1055818 735156 735156 341725 0 0 0 350s 280000 1055818 1055818 735156 735156 341725 0 0 0 350s 300000 1055818 1055818 735156 735156 341725 0 0 0 350s 320000 1055818 1055818 735156 735156 341725 0 0 0 350s 340000 735156 735156 735156 735156 341725 0 0 0 350s 360000 393431 393431 393431 393431 0 0 0 0 350s 380000 393431 393431 393431 393431 0 0 0 0 350s 400000 0 0 0 0 0 0 0 0 350s 350s Number of reads >= bin by mean Phred+Len 350s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 350s 0 371 321 277 207 114 49 2 0 350s 250 369 320 276 206 113 48 2 0 350s 500 363 315 273 203 112 47 2 0 350s 750 355 311 270 201 111 46 2 0 350s 1000 349 307 266 197 108 44 2 0 350s 1500 341 302 263 194 106 44 2 0 350s 2000 322 284 245 179 98 42 2 0 350s 2500 308 271 233 172 94 40 2 0 350s 3000 296 264 227 167 93 40 2 0 350s 3500 282 251 215 156 84 36 2 0 350s 4000 268 237 201 144 79 36 2 0 350s 4500 256 226 192 140 77 34 2 0 350s 5000 246 216 184 134 73 33 2 0 350s 5500 236 208 176 130 72 32 1 0 350s 6000 226 199 167 121 68 30 1 0 350s 6500 215 190 160 115 65 28 0 0 350s 7000 209 185 156 113 64 28 0 0 350s 7500 203 179 151 110 62 26 0 0 350s 8000 197 174 146 106 59 25 0 0 350s 8500 191 170 142 103 57 25 0 0 350s 9000 188 167 140 101 56 24 0 0 350s 9500 182 161 137 100 55 24 0 0 350s 10000 178 157 135 99 54 24 0 0 350s 11000 169 150 129 94 51 24 0 0 350s 12000 160 142 122 90 48 22 0 0 350s 13000 144 128 111 84 46 21 0 0 350s 14000 138 123 107 80 44 19 0 0 350s 15000 134 119 103 76 41 18 0 0 350s 16000 130 116 100 74 41 18 0 0 350s 17000 123 109 94 69 38 17 0 0 350s 18000 119 105 90 65 34 16 0 0 350s 19000 115 102 87 63 33 15 0 0 350s 20000 111 98 84 61 33 15 0 0 350s 21000 105 93 80 58 30 13 0 0 350s 22000 100 90 77 56 28 12 0 0 350s 23000 96 86 73 53 26 11 0 0 350s 24000 94 84 71 51 26 11 0 0 350s 25000 90 80 68 49 25 11 0 0 350s 26000 88 78 67 49 25 11 0 0 350s 27000 84 74 64 47 23 10 0 0 350s 28000 81 71 61 46 22 9 0 0 350s 29000 76 66 57 42 21 8 0 0 350s 30000 71 61 52 38 20 8 0 0 350s 31000 69 59 50 36 19 7 0 0 350s 32000 67 57 48 34 18 7 0 0 350s 33000 66 56 47 33 18 7 0 0 350s 34000 66 56 47 33 18 7 0 0 350s 35000 64 55 46 32 18 7 0 0 350s 36000 61 52 45 31 18 7 0 0 350s 37000 58 49 44 30 17 7 0 0 350s 38000 58 49 44 30 17 7 0 0 350s 39000 57 49 44 30 17 7 0 0 350s 40000 57 49 44 30 17 7 0 0 350s 45000 52 46 42 29 17 7 0 0 350s 50000 47 42 38 25 16 6 0 0 350s 55000 43 38 34 21 13 4 0 0 350s 60000 36 31 28 18 10 3 0 0 350s 65000 32 28 25 16 9 2 0 0 350s 70000 28 25 23 14 9 2 0 0 350s 75000 23 21 19 12 7 2 0 0 350s 80000 21 19 18 11 7 2 0 0 350s 85000 20 18 17 11 7 2 0 0 350s 90000 17 16 15 10 6 2 0 0 350s 95000 17 16 15 10 6 2 0 0 350s 100000 14 13 12 8 4 1 0 0 350s 120000 10 9 8 5 2 0 0 0 350s 140000 6 6 5 3 1 0 0 0 350s 160000 6 6 5 3 1 0 0 0 350s 180000 6 6 5 3 1 0 0 0 350s 200000 5 5 4 2 1 0 0 0 350s 220000 5 5 4 2 1 0 0 0 350s 240000 3 3 2 2 1 0 0 0 350s 260000 3 3 2 2 1 0 0 0 350s 280000 3 3 2 2 1 0 0 0 350s 300000 3 3 2 2 1 0 0 0 350s 320000 3 3 2 2 1 0 0 0 350s 340000 2 2 2 2 1 0 0 0 350s 360000 1 1 1 1 0 0 0 0 350s 380000 1 1 1 1 0 0 0 0 350s 400000 0 0 0 0 0 0 0 0 350s 351s pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12 354s # Fastq stats for reads.fastq.gz, reads >= 0bp 354s numReads: 371 354s %totalNumReads: 100.00 354s numBasepairs: 8611871 354s %totalBasepairs: 100.00 354s meanLen: 23212.590296495957 354s medianLen: 9390.0 354s minLen: 212 354s maxLen: 393431 354s N50: 60395 354s L50: 36 354s 354s # Fastq stats for reads.fastq.gz, reads >= 1000bp 354s numReads: 349 354s %totalNumReads: 94.07 354s numBasepairs: 8599196 354s %totalBasepairs: 99.85 354s meanLen: 24639.530085959886 354s medianLen: 10585.0 354s minLen: 1009 354s maxLen: 393431 354s N50: 60395 354s L50: 36 354s 354s # Fastq stats for reads.fastq.gz, reads >= 5000bp 354s numReads: 246 354s %totalNumReads: 66.31 354s numBasepairs: 8296771 354s %totalBasepairs: 96.34 354s meanLen: 33726.71138211382 354s medianLen: 17146.0 354s minLen: 5082 354s maxLen: 393431 354s N50: 61111 354s L50: 33 354s 354s # Fastq stats for reads.fastq.gz, reads >= 10000bp 354s numReads: 178 354s %totalNumReads: 47.98 354s numBasepairs: 7817574 354s %totalBasepairs: 90.78 354s meanLen: 43918.95505617977 354s medianLen: 25216.5 354s minLen: 10192 354s maxLen: 393431 354s N50: 67193 354s L50: 30 354s 354s 354s Basepairs >= bin by mean PHRED and length 354s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 354s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 354s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 354s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 354s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 354s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 354s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 354s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 354s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 354s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 354s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 354s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 354s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 354s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 354s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 354s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 354s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 354s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 354s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 354s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 354s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 354s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 354s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 354s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 354s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 354s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 354s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 354s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 354s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 354s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 354s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 354s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 354s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 354s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 354s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 354s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 354s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 354s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 354s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 354s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 354s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 354s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 354s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 354s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 354s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 354s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 354s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 354s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 354s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 354s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 354s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 354s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 354s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 354s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 354s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 354s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 354s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 354s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 354s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 354s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 354s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 354s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 354s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 354s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 354s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 354s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 354s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 354s 140000 1699582 1699582 1378920 930176 341725 0 0 0 354s 160000 1699582 1699582 1378920 930176 341725 0 0 0 354s 180000 1699582 1699582 1378920 930176 341725 0 0 0 354s 200000 1504562 1504562 1183900 735156 341725 0 0 0 354s 220000 1504562 1504562 1183900 735156 341725 0 0 0 354s 240000 1055818 1055818 735156 735156 341725 0 0 0 354s 260000 1055818 1055818 735156 735156 341725 0 0 0 354s 280000 1055818 1055818 735156 735156 341725 0 0 0 354s 300000 1055818 1055818 735156 735156 341725 0 0 0 354s 320000 1055818 1055818 735156 735156 341725 0 0 0 354s 340000 735156 735156 735156 735156 341725 0 0 0 354s 360000 393431 393431 393431 393431 0 0 0 0 354s 380000 393431 393431 393431 393431 0 0 0 0 354s 400000 0 0 0 0 0 0 0 0 354s 354s Number of reads >= bin by mean Phred+Len 354s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 354s 0 371 321 277 207 114 49 2 0 354s 250 369 320 276 206 113 48 2 0 354s 500 363 315 273 203 112 47 2 0 354s 750 355 311 270 201 111 46 2 0 354s 1000 349 307 266 197 108 44 2 0 354s 1500 341 302 263 194 106 44 2 0 354s 2000 322 284 245 179 98 42 2 0 354s 2500 308 271 233 172 94 40 2 0 354s 3000 296 264 227 167 93 40 2 0 354s 3500 282 251 215 156 84 36 2 0 354s 4000 268 237 201 144 79 36 2 0 354s 4500 256 226 192 140 77 34 2 0 354s 5000 246 216 184 134 73 33 2 0 354s 5500 236 208 176 130 72 32 1 0 354s 6000 226 199 167 121 68 30 1 0 354s 6500 215 190 160 115 65 28 0 0 354s 7000 209 185 156 113 64 28 0 0 354s 7500 203 179 151 110 62 26 0 0 354s 8000 197 174 146 106 59 25 0 0 354s 8500 191 170 142 103 57 25 0 0 354s 9000 188 167 140 101 56 24 0 0 354s 9500 182 161 137 100 55 24 0 0 354s 10000 178 157 135 99 54 24 0 0 354s 11000 169 150 129 94 51 24 0 0 354s 12000 160 142 122 90 48 22 0 0 354s 13000 144 128 111 84 46 21 0 0 354s 14000 138 123 107 80 44 19 0 0 354s 15000 134 119 103 76 41 18 0 0 354s 16000 130 116 100 74 41 18 0 0 354s 17000 123 109 94 69 38 17 0 0 354s 18000 119 105 90 65 34 16 0 0 354s 19000 115 102 87 63 33 15 0 0 354s 20000 111 98 84 61 33 15 0 0 354s 21000 105 93 80 58 30 13 0 0 354s 22000 100 90 77 56 28 12 0 0 354s 23000 96 86 73 53 26 11 0 0 354s 24000 94 84 71 51 26 11 0 0 354s 25000 90 80 68 49 25 11 0 0 354s 26000 88 78 67 49 25 11 0 0 354s 27000 84 74 64 47 23 10 0 0 354s 28000 81 71 61 46 22 9 0 0 354s 29000 76 66 57 42 21 8 0 0 354s 30000 71 61 52 38 20 8 0 0 354s 31000 69 59 50 36 19 7 0 0 354s 32000 67 57 48 34 18 7 0 0 354s 33000 66 56 47 33 18 7 0 0 354s 34000 66 56 47 33 18 7 0 0 354s 35000 64 55 46 32 18 7 0 0 354s 36000 61 52 45 31 18 7 0 0 354s 37000 58 49 44 30 17 7 0 0 354s 38000 58 49 44 30 17 7 0 0 354s 39000 57 49 44 30 17 7 0 0 354s 40000 57 49 44 30 17 7 0 0 354s 45000 52 46 42 29 17 7 0 0 354s 50000 47 42 38 25 16 6 0 0 354s 55000 43 38 34 21 13 4 0 0 354s 60000 36 31 28 18 10 3 0 0 354s 65000 32 28 25 16 9 2 0 0 354s 70000 28 25 23 14 9 2 0 0 354s 75000 23 21 19 12 7 2 0 0 354s 80000 21 19 18 11 7 2 0 0 354s 85000 20 18 17 11 7 2 0 0 354s 90000 17 16 15 10 6 2 0 0 354s 95000 17 16 15 10 6 2 0 0 354s 100000 14 13 12 8 4 1 0 0 354s 120000 10 9 8 5 2 0 0 0 354s 140000 6 6 5 3 1 0 0 0 354s 160000 6 6 5 3 1 0 0 0 354s 180000 6 6 5 3 1 0 0 0 354s 200000 5 5 4 2 1 0 0 0 354s 220000 5 5 4 2 1 0 0 0 354s 240000 3 3 2 2 1 0 0 0 354s 260000 3 3 2 2 1 0 0 0 354s 280000 3 3 2 2 1 0 0 0 354s 300000 3 3 2 2 1 0 0 0 354s 320000 3 3 2 2 1 0 0 0 354s 340000 2 2 2 2 1 0 0 0 354s 360000 1 1 1 1 0 0 0 0 354s 380000 1 1 1 1 0 0 0 0 354s 400000 0 0 0 0 0 0 0 0 354s 354s autopkgtest [20:29:23]: test run-unit-test: -----------------------] 358s autopkgtest [20:29:27]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 358s run-unit-test PASS 362s autopkgtest [20:29:31]: @@@@@@@@@@@@@@@@@@@@ summary 362s run-unit-test PASS