0s autopkgtest [20:49:17]: starting date and time: 2024-11-13 20:49:17+0000 0s autopkgtest [20:49:17]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [20:49:17]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.22y_xjly/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-hdmedians --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.16 lxd-armhf-10.145.243.16:autopkgtest/ubuntu/plucky/armhf 53s autopkgtest [20:50:10]: testbed dpkg architecture: armhf 55s autopkgtest [20:50:12]: testbed apt version: 2.9.8 55s autopkgtest [20:50:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 63s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 63s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 63s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [970 kB] 63s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [104 kB] 63s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [662 kB] 63s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 64s Fetched 1951 kB in 1s (2087 kB/s) 64s Reading package lists... 81s tee: /proc/self/fd/2: Permission denied 103s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 103s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 103s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 104s Reading package lists... 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 106s The following NEW packages will be installed: 106s python3.13-gdbm 106s The following packages will be upgraded: 106s libgnutls30t64 libjson-glib-1.0-0 libjson-glib-1.0-common libnewt0.52 106s libpython3-stdlib libutempter0 python3 python3-gdbm python3-minimal 106s python3-newt whiptail 106s 11 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 1207 kB of archives. 106s After this operation, 124 kB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 106s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 106s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 106s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 106s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 106s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 106s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 106s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 107s Fetched 1207 kB in 1s (2144 kB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 107s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 107s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 107s Setting up python3-minimal (3.12.7-1) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 107s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 107s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 107s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 107s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 107s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_armhf.deb ... 107s Unpacking libgnutls30t64:armhf (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 107s Setting up libgnutls30t64:armhf (3.8.8-2ubuntu1) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 107s Preparing to unpack .../0-python3-newt_0.52.24-2ubuntu4_armhf.deb ... 107s Unpacking python3-newt:armhf (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 107s Preparing to unpack .../1-libnewt0.52_0.52.24-2ubuntu4_armhf.deb ... 107s Unpacking libnewt0.52:armhf (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 108s Preparing to unpack .../2-whiptail_0.52.24-2ubuntu4_armhf.deb ... 108s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 108s Selecting previously unselected package python3.13-gdbm. 108s Preparing to unpack .../3-python3.13-gdbm_3.13.0-2_armhf.deb ... 108s Unpacking python3.13-gdbm (3.13.0-2) ... 108s Preparing to unpack .../4-python3-gdbm_3.12.7-1_armhf.deb ... 108s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 108s Preparing to unpack .../5-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 108s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 108s Preparing to unpack .../6-libjson-glib-1.0-0_1.10.0+ds-3_armhf.deb ... 108s Unpacking libjson-glib-1.0-0:armhf (1.10.0+ds-3) over (1.10.0+ds-2) ... 108s Preparing to unpack .../7-libutempter0_1.2.1-4_armhf.deb ... 108s Unpacking libutempter0:armhf (1.2.1-4) over (1.2.1-3build1) ... 108s Setting up libnewt0.52:armhf (0.52.24-2ubuntu4) ... 108s Setting up libutempter0:armhf (1.2.1-4) ... 108s Setting up whiptail (0.52.24-2ubuntu4) ... 108s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 108s Setting up python3.13-gdbm (3.13.0-2) ... 108s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 108s Setting up python3 (3.12.7-1) ... 108s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 108s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 108s Setting up python3-gdbm:armhf (3.12.7-1) ... 108s Processing triggers for man-db (2.12.1-3) ... 109s Processing triggers for libc-bin (2.40-1ubuntu3) ... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s autopkgtest [20:51:09]: rebooting testbed after setup commands that affected boot 181s autopkgtest [20:52:18]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 209s autopkgtest [20:52:46]: @@@@@@@@@@@@@@@@@@@@ apt-source python-hdmedians 219s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-hdmedians 0.14.2-5.1build1 (dsc) [2251 B] 219s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-hdmedians 0.14.2-5.1build1 (tar) [109 kB] 219s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-hdmedians 0.14.2-5.1build1 (diff) [3660 B] 220s gpgv: Signature made Wed Apr 10 18:32:59 2024 UTC 220s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 220s gpgv: Can't check signature: No public key 220s dpkg-source: warning: cannot verify inline signature for ./python-hdmedians_0.14.2-5.1build1.dsc: no acceptable signature found 220s autopkgtest [20:52:57]: testing package python-hdmedians version 0.14.2-5.1build1 222s autopkgtest [20:52:59]: build not needed 224s autopkgtest [20:53:01]: test run-unit-test: preparing testbed 235s Reading package lists... 235s Building dependency tree... 235s Reading state information... 235s Starting pkgProblemResolver with broken count: 0 235s Starting 2 pkgProblemResolver with broken count: 0 235s Done 236s The following additional packages will be installed: 236s libblas3 libgfortran5 liblapack3 libpython3.13-minimal libpython3.13-stdlib 236s python3-all python3-hdmedians python3-iniconfig python3-numpy 236s python3-packaging python3-pluggy python3-pytest python3.13 236s python3.13-minimal 236s Suggested packages: 236s gcc gfortran python-numpy-doc python3-dev python3.13-venv python3.13-doc 236s binfmt-support 236s The following NEW packages will be installed: 236s autopkgtest-satdep libblas3 libgfortran5 liblapack3 libpython3.13-minimal 236s libpython3.13-stdlib python3-all python3-hdmedians python3-iniconfig 236s python3-numpy python3-packaging python3-pluggy python3-pytest python3.13 236s python3.13-minimal 236s 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. 236s Need to get 11.9 MB/11.9 MB of archives. 236s After this operation, 42.8 MB of additional disk space will be used. 236s Get:1 /tmp/autopkgtest.wa7X12/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B] 237s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 238s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 238s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 238s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 238s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 238s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 238s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 238s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 238s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 238s Get:11 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-hdmedians armhf 0.14.2-5.1build1 [113 kB] 238s Get:12 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 238s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 238s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 238s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB] 238s Fetched 11.9 MB in 1s (12.5 MB/s) 238s Selecting previously unselected package libpython3.13-minimal:armhf. 238s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59567 files and directories currently installed.) 238s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ... 238s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 238s Selecting previously unselected package python3.13-minimal. 238s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ... 238s Unpacking python3.13-minimal (3.13.0-2) ... 238s Selecting previously unselected package libblas3:armhf. 238s Preparing to unpack .../02-libblas3_3.12.0-3build2_armhf.deb ... 238s Unpacking libblas3:armhf (3.12.0-3build2) ... 238s Selecting previously unselected package libgfortran5:armhf. 238s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 238s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 238s Selecting previously unselected package liblapack3:armhf. 238s Preparing to unpack .../04-liblapack3_3.12.0-3build2_armhf.deb ... 238s Unpacking liblapack3:armhf (3.12.0-3build2) ... 238s Selecting previously unselected package libpython3.13-stdlib:armhf. 238s Preparing to unpack .../05-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 238s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 238s Selecting previously unselected package python3.13. 238s Preparing to unpack .../06-python3.13_3.13.0-2_armhf.deb ... 238s Unpacking python3.13 (3.13.0-2) ... 238s Selecting previously unselected package python3-all. 238s Preparing to unpack .../07-python3-all_3.12.7-1_armhf.deb ... 238s Unpacking python3-all (3.12.7-1) ... 238s Selecting previously unselected package python3-numpy. 238s Preparing to unpack .../08-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 238s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 239s Selecting previously unselected package python3-hdmedians. 239s Preparing to unpack .../09-python3-hdmedians_0.14.2-5.1build1_armhf.deb ... 239s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 239s Selecting previously unselected package python3-iniconfig. 239s Preparing to unpack .../10-python3-iniconfig_1.1.1-2_all.deb ... 239s Unpacking python3-iniconfig (1.1.1-2) ... 239s Selecting previously unselected package python3-packaging. 239s Preparing to unpack .../11-python3-packaging_24.1-1_all.deb ... 239s Unpacking python3-packaging (24.1-1) ... 239s Selecting previously unselected package python3-pluggy. 239s Preparing to unpack .../12-python3-pluggy_1.5.0-1_all.deb ... 239s Unpacking python3-pluggy (1.5.0-1) ... 239s Selecting previously unselected package python3-pytest. 239s Preparing to unpack .../13-python3-pytest_8.3.3-1_all.deb ... 239s Unpacking python3-pytest (8.3.3-1) ... 239s Selecting previously unselected package autopkgtest-satdep. 239s Preparing to unpack .../14-1-autopkgtest-satdep.deb ... 239s Unpacking autopkgtest-satdep (0) ... 239s Setting up python3-iniconfig (1.1.1-2) ... 239s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 239s Setting up libblas3:armhf (3.12.0-3build2) ... 239s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 239s Setting up python3-packaging (24.1-1) ... 239s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 239s Setting up python3-pluggy (1.5.0-1) ... 240s Setting up python3.13-minimal (3.13.0-2) ... 241s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... 241s Setting up liblapack3:armhf (3.12.0-3build2) ... 241s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 241s Setting up python3.13 (3.13.0-2) ... 243s Setting up python3-pytest (8.3.3-1) ... 243s Setting up python3-all (3.12.7-1) ... 243s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 248s Setting up python3-hdmedians (0.14.2-5.1build1) ... 248s Setting up autopkgtest-satdep (0) ... 248s Processing triggers for systemd (256.5-2ubuntu4) ... 248s Processing triggers for man-db (2.12.1-3) ... 248s Processing triggers for libc-bin (2.40-1ubuntu3) ... 260s (Reading database ... 61384 files and directories currently installed.) 260s Removing autopkgtest-satdep (0) ... 267s autopkgtest [20:53:44]: test run-unit-test: [----------------------- 269s Testing with python3.13 in /tmp/autopkgtest.wa7X12/autopkgtest_tmp: 269s ============================= test session starts ============================== 269s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 269s cachedir: .pytest_cache 269s rootdir: /tmp/autopkgtest.wa7X12/autopkgtest_tmp 269s plugins: typeguard-4.4.1 270s collecting ... collected 0 items / 2 errors 270s 270s ==================================== ERRORS ==================================== 270s ______________________ ERROR collecting test_geomedian.py ______________________ 270s ImportError while importing test module '/tmp/autopkgtest.wa7X12/autopkgtest_tmp/test_geomedian.py'. 270s Hint: make sure your test modules/packages have valid Python names. 270s Traceback: 270s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 270s from . import multiarray 270s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 270s from . import overrides 270s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 270s from numpy.core._multiarray_umath import ( 270s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 270s 270s During handling of the above exception, another exception occurred: 270s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 270s from numpy.__config__ import show as show_config 270s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 270s from numpy.core._multiarray_umath import ( 270s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 270s raise ImportError(msg) 270s E ImportError: 270s E 270s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 270s E 270s E Importing the numpy C-extensions failed. This error can happen for 270s E many reasons, often due to issues with your setup or how NumPy was 270s E installed. 270s E 270s E We have compiled some common reasons and troubleshooting tips at: 270s E 270s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 270s E 270s E Please note and check the following: 270s E 270s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 270s E * The NumPy version is: "1.26.4" 270s E 270s E and make sure that they are the versions you expect. 270s E Please carefully study the documentation linked above for further help. 270s E 270s E Original error was: No module named 'numpy.core._multiarray_umath' 270s 270s The above exception was the direct cause of the following exception: 270s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 270s return _bootstrap._gcd_import(name[level:], package, level) 270s test_geomedian.py:5: in 270s import numpy as np 270s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 270s raise ImportError(msg) from e 270s E ImportError: Error importing numpy: you should not try to import numpy from 270s E its source directory; please exit the numpy source tree, and relaunch 270s E your python interpreter from there. 270s _______________________ ERROR collecting test_medoid.py ________________________ 270s ImportError while importing test module '/tmp/autopkgtest.wa7X12/autopkgtest_tmp/test_medoid.py'. 270s Hint: make sure your test modules/packages have valid Python names. 270s Traceback: 270s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 270s from . import multiarray 270s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 270s from . import overrides 270s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 270s from numpy.core._multiarray_umath import ( 270s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 270s 270s During handling of the above exception, another exception occurred: 270s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 270s from numpy.__config__ import show as show_config 270s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 270s from numpy.core._multiarray_umath import ( 270s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 270s raise ImportError(msg) 270s E ImportError: 270s E 270s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 270s E 270s E Importing the numpy C-extensions failed. This error can happen for 270s E many reasons, often due to issues with your setup or how NumPy was 270s E installed. 270s E 270s E We have compiled some common reasons and troubleshooting tips at: 270s E 270s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 270s E 270s E Please note and check the following: 270s E 270s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 270s E * The NumPy version is: "1.26.4" 270s E 270s E and make sure that they are the versions you expect. 270s E Please carefully study the documentation linked above for further help. 270s E 270s E Original error was: No module named 'numpy.core._multiarray_umath' 270s 270s The above exception was the direct cause of the following exception: 270s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 270s return _bootstrap._gcd_import(name[level:], package, level) 270s test_medoid.py:5: in 270s import numpy as np 270s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 270s raise ImportError(msg) from e 270s E ImportError: Error importing numpy: you should not try to import numpy from 270s E its source directory; please exit the numpy source tree, and relaunch 270s E your python interpreter from there. 270s =========================== short test summary info ============================ 270s ERROR test_geomedian.py 270s ERROR test_medoid.py 270s !!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!! 270s ============================== 2 errors in 0.17s =============================== 270s autopkgtest [20:53:47]: test run-unit-test: -----------------------] 274s autopkgtest [20:53:51]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 274s run-unit-test FAIL non-zero exit status 2 278s autopkgtest [20:53:55]: test autodep8-python3: preparing testbed 333s autopkgtest [20:54:50]: testbed dpkg architecture: armhf 335s autopkgtest [20:54:52]: testbed apt version: 2.9.8 335s autopkgtest [20:54:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 343s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 343s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 343s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 343s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [970 kB] 343s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 343s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [104 kB] 343s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [662 kB] 343s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 344s Fetched 1951 kB in 1s (2116 kB/s) 344s Reading package lists... 360s tee: /proc/self/fd/2: Permission denied 384s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 384s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 384s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 384s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 386s Reading package lists... 386s Reading package lists... 386s Building dependency tree... 386s Reading state information... 387s Calculating upgrade... 387s The following NEW packages will be installed: 387s python3.13-gdbm 387s The following packages will be upgraded: 387s libgnutls30t64 libjson-glib-1.0-0 libjson-glib-1.0-common libnewt0.52 387s libpython3-stdlib libutempter0 python3 python3-gdbm python3-minimal 387s python3-newt whiptail 387s 11 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 387s Need to get 1207 kB of archives. 387s After this operation, 124 kB of additional disk space will be used. 387s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 388s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 388s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 388s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 388s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 388s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 388s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 388s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 388s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 388s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 388s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 388s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 388s Fetched 1207 kB in 1s (2117 kB/s) 388s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 388s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 388s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 388s Setting up python3-minimal (3.12.7-1) ... 389s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 389s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 389s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 389s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 389s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 389s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_armhf.deb ... 389s Unpacking libgnutls30t64:armhf (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 389s Setting up libgnutls30t64:armhf (3.8.8-2ubuntu1) ... 389s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 389s Preparing to unpack .../0-python3-newt_0.52.24-2ubuntu4_armhf.deb ... 389s Unpacking python3-newt:armhf (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 389s Preparing to unpack .../1-libnewt0.52_0.52.24-2ubuntu4_armhf.deb ... 389s Unpacking libnewt0.52:armhf (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 389s Preparing to unpack .../2-whiptail_0.52.24-2ubuntu4_armhf.deb ... 389s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 389s Selecting previously unselected package python3.13-gdbm. 389s Preparing to unpack .../3-python3.13-gdbm_3.13.0-2_armhf.deb ... 389s Unpacking python3.13-gdbm (3.13.0-2) ... 389s Preparing to unpack .../4-python3-gdbm_3.12.7-1_armhf.deb ... 389s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 389s Preparing to unpack .../5-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 389s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 389s Preparing to unpack .../6-libjson-glib-1.0-0_1.10.0+ds-3_armhf.deb ... 389s Unpacking libjson-glib-1.0-0:armhf (1.10.0+ds-3) over (1.10.0+ds-2) ... 389s Preparing to unpack .../7-libutempter0_1.2.1-4_armhf.deb ... 389s Unpacking libutempter0:armhf (1.2.1-4) over (1.2.1-3build1) ... 389s Setting up libnewt0.52:armhf (0.52.24-2ubuntu4) ... 389s Setting up libutempter0:armhf (1.2.1-4) ... 389s Setting up whiptail (0.52.24-2ubuntu4) ... 389s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 389s Setting up python3.13-gdbm (3.13.0-2) ... 389s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 389s Setting up python3 (3.12.7-1) ... 390s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 390s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 390s Setting up python3-gdbm:armhf (3.12.7-1) ... 390s Processing triggers for man-db (2.12.1-3) ... 390s Processing triggers for libc-bin (2.40-1ubuntu3) ... 391s Reading package lists... 391s Building dependency tree... 391s Reading state information... 392s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 394s autopkgtest [20:55:51]: rebooting testbed after setup commands that affected boot 503s Reading package lists... 503s Building dependency tree... 503s Reading state information... 503s Starting pkgProblemResolver with broken count: 0 503s Starting 2 pkgProblemResolver with broken count: 0 503s Done 504s The following additional packages will be installed: 504s libblas3 libgfortran5 liblapack3 libpython3.13-minimal libpython3.13-stdlib 504s python3-all python3-hdmedians python3-numpy python3.13 python3.13-minimal 504s Suggested packages: 504s gcc gfortran python-numpy-doc python3-dev python3-pytest python3.13-venv 504s python3.13-doc binfmt-support 504s The following NEW packages will be installed: 504s autopkgtest-satdep libblas3 libgfortran5 liblapack3 libpython3.13-minimal 504s libpython3.13-stdlib python3-all python3-hdmedians python3-numpy python3.13 504s python3.13-minimal 504s 0 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. 504s Need to get 11.6 MB/11.6 MB of archives. 504s After this operation, 41.2 MB of additional disk space will be used. 504s Get:1 /tmp/autopkgtest.wa7X12/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B] 504s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 505s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 505s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 505s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 505s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 505s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 505s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 505s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 505s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 505s Get:11 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-hdmedians armhf 0.14.2-5.1build1 [113 kB] 506s Fetched 11.6 MB in 1s (10.4 MB/s) 506s Selecting previously unselected package libpython3.13-minimal:armhf. 506s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59567 files and directories currently installed.) 506s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ... 506s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 506s Selecting previously unselected package python3.13-minimal. 506s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ... 506s Unpacking python3.13-minimal (3.13.0-2) ... 506s Selecting previously unselected package libblas3:armhf. 506s Preparing to unpack .../02-libblas3_3.12.0-3build2_armhf.deb ... 506s Unpacking libblas3:armhf (3.12.0-3build2) ... 506s Selecting previously unselected package libgfortran5:armhf. 506s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 506s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 506s Selecting previously unselected package liblapack3:armhf. 506s Preparing to unpack .../04-liblapack3_3.12.0-3build2_armhf.deb ... 506s Unpacking liblapack3:armhf (3.12.0-3build2) ... 506s Selecting previously unselected package libpython3.13-stdlib:armhf. 506s Preparing to unpack .../05-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 506s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 506s Selecting previously unselected package python3.13. 506s Preparing to unpack .../06-python3.13_3.13.0-2_armhf.deb ... 506s Unpacking python3.13 (3.13.0-2) ... 506s Selecting previously unselected package python3-all. 506s Preparing to unpack .../07-python3-all_3.12.7-1_armhf.deb ... 506s Unpacking python3-all (3.12.7-1) ... 506s Selecting previously unselected package python3-numpy. 506s Preparing to unpack .../08-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 506s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 507s Selecting previously unselected package python3-hdmedians. 507s Preparing to unpack .../09-python3-hdmedians_0.14.2-5.1build1_armhf.deb ... 507s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 507s Selecting previously unselected package autopkgtest-satdep. 507s Preparing to unpack .../10-2-autopkgtest-satdep.deb ... 507s Unpacking autopkgtest-satdep (0) ... 507s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 507s Setting up libblas3:armhf (3.12.0-3build2) ... 507s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 507s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 507s Setting up python3.13-minimal (3.13.0-2) ... 508s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... 508s Setting up liblapack3:armhf (3.12.0-3build2) ... 508s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 508s Setting up python3.13 (3.13.0-2) ... 509s Setting up python3-all (3.12.7-1) ... 509s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 513s Setting up python3-hdmedians (0.14.2-5.1build1) ... 513s Setting up autopkgtest-satdep (0) ... 513s Processing triggers for systemd (256.5-2ubuntu4) ... 513s Processing triggers for man-db (2.12.1-3) ... 513s Processing triggers for libc-bin (2.40-1ubuntu3) ... 525s (Reading database ... 61220 files and directories currently installed.) 525s Removing autopkgtest-satdep (0) ... 538s autopkgtest [20:58:15]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import hdmedians; print(hdmedians)" ; done 538s autopkgtest [20:58:15]: test autodep8-python3: [----------------------- 540s Testing with python3.13: 540s Traceback (most recent call last): 540s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 540s from . import multiarray 540s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 540s from . import overrides 540s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 540s from numpy.core._multiarray_umath import ( 540s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 540s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 540s 540s During handling of the above exception, another exception occurred: 540s 540s Traceback (most recent call last): 540s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 540s from numpy.__config__ import show as show_config 540s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 540s from numpy.core._multiarray_umath import ( 540s ...<3 lines>... 540s ) 540s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 540s raise ImportError(msg) 540s ImportError: 540s 540s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 540s 540s Importing the numpy C-extensions failed. This error can happen for 540s many reasons, often due to issues with your setup or how NumPy was 540s installed. 540s 540s We have compiled some common reasons and troubleshooting tips at: 540s 540s https://numpy.org/devdocs/user/troubleshooting-importerror.html 540s 540s Please note and check the following: 540s 540s * The Python version is: Python3.13 from "/usr/bin/python3.13" 540s * The NumPy version is: "1.26.4" 540s 540s and make sure that they are the versions you expect. 540s Please carefully study the documentation linked above for further help. 540s 540s Original error was: No module named 'numpy.core._multiarray_umath' 540s 540s 540s The above exception was the direct cause of the following exception: 540s 540s Traceback (most recent call last): 540s File "", line 1, in 540s import hdmedians; print(hdmedians) 540s ^^^^^^^^^^^^^^^^ 540s File "/usr/lib/python3/dist-packages/hdmedians/__init__.py", line 5, in 540s from .medoid import medoid, nanmedoid 540s File "/usr/lib/python3/dist-packages/hdmedians/medoid.py", line 6, in 540s import numpy as np 540s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 540s raise ImportError(msg) from e 540s ImportError: Error importing numpy: you should not try to import numpy from 540s its source directory; please exit the numpy source tree, and relaunch 540s your python interpreter from there. 541s autopkgtest [20:58:18]: test autodep8-python3: -----------------------] 545s autodep8-python3 FAIL non-zero exit status 1 545s autopkgtest [20:58:22]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 549s autopkgtest [20:58:26]: @@@@@@@@@@@@@@@@@@@@ summary 549s run-unit-test FAIL non-zero exit status 2 549s autodep8-python3 FAIL non-zero exit status 1