0s autopkgtest [15:41:48]: starting date and time: 2025-03-15 15:41:48+0000 0s autopkgtest [15:41:48]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:41:48]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.36tmvs9p/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade python-cutadapt --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.141 lxd-armhf-10.145.243.141:autopkgtest/ubuntu/plucky/armhf 22s autopkgtest [15:42:10]: testbed dpkg architecture: armhf 24s autopkgtest [15:42:12]: testbed apt version: 2.9.33 30s autopkgtest [15:42:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 32s autopkgtest [15:42:20]: testbed release detected to be: None 41s autopkgtest [15:42:29]: updating testbed package index (apt update) 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 44s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 44s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 45s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 45s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [114 kB] 46s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1832 B] 46s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 46s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [312 kB] 46s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [11.1 kB] 46s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 46s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 46s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 69s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1394 kB] 70s Get:17 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 71s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 72s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 72s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 72s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 94s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 96s Fetched 41.0 MB in 53s (781 kB/s) 98s Reading package lists... 103s autopkgtest [15:43:31]: upgrading testbed (apt dist-upgrade and autopurge) 105s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 107s Starting 2 pkgProblemResolver with broken count: 0 107s Done 108s Entering ResolveByKeep 108s 108s Calculating upgrade... 109s The following packages will be upgraded: 109s libc-bin libc6 locales pinentry-curses python3-jinja2 sos strace 109s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 8683 kB of archives. 109s After this operation, 23.6 kB of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 115s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 116s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 123s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 124s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 124s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 124s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 125s Preconfiguring packages ... 125s Fetched 8683 kB in 15s (564 kB/s) 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 126s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 126s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 126s Setting up libc6:armhf (2.41-1ubuntu2) ... 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 126s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 126s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 126s Setting up libc-bin (2.41-1ubuntu2) ... 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 127s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 127s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 127s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 127s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 128s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 128s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 128s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 128s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 128s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 128s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 128s Setting up sos (4.9.0-5) ... 130s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 130s Setting up locales (2.41-1ubuntu2) ... 131s Generating locales (this might take a while)... 136s en_US.UTF-8... done 136s Generation complete. 136s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 136s Setting up strace (6.13+ds-1ubuntu1) ... 136s Processing triggers for man-db (2.13.0-1) ... 138s Processing triggers for systemd (257.3-1ubuntu3) ... 140s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s Starting pkgProblemResolver with broken count: 0 142s Starting 2 pkgProblemResolver with broken count: 0 142s Done 143s Solving dependencies... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s autopkgtest [15:44:15]: rebooting testbed after setup commands that affected boot 187s autopkgtest [15:44:55]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 213s autopkgtest [15:45:21]: @@@@@@@@@@@@@@@@@@@@ apt-source python-cutadapt 227s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-cutadapt 4.7-2build2 (dsc) [2508 B] 227s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-cutadapt 4.7-2build2 (tar) [243 kB] 227s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-cutadapt 4.7-2build2 (diff) [8948 B] 227s gpgv: Signature made Tue Mar 4 16:10:11 2025 UTC 227s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 227s gpgv: Can't check signature: No public key 227s dpkg-source: warning: cannot verify inline signature for ./python-cutadapt_4.7-2build2.dsc: no acceptable signature found 227s autopkgtest [15:45:35]: testing package python-cutadapt version 4.7-2build2 229s autopkgtest [15:45:37]: build not needed 232s autopkgtest [15:45:40]: test pybuild-autopkgtest: preparing testbed 234s Reading package lists... 234s Building dependency tree... 234s Reading state information... 234s Starting pkgProblemResolver with broken count: 0 235s Starting 2 pkgProblemResolver with broken count: 0 235s Done 236s The following NEW packages will be installed: 236s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 236s cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cutadapt cython3 236s debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz g++ 236s g++-14 g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-14 236s gcc-14-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gettext intltool-debian 236s libarchive-zip-perl libasan8 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev 236s libdebhelper-perl libdw1t64 libexpat1-dev libfile-stripnondeterminism-perl 236s libgcc-14-dev libgomp1 libisl23 libjs-jquery libjs-sphinxdoc 236s libjs-underscore libmpc3 libpython3-all-dev libpython3-dev libpython3.13 236s libpython3.13-dev libstdc++-14-dev libtool libubsan1 linux-libc-dev m4 pigz 236s po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject python3-all 236s python3-all-dev python3-build python3-cutadapt python3-dev python3-dnaio 236s python3-iniconfig python3-installer python3-pluggy python3-pyproject-hooks 236s python3-pytest python3-pytest-mock python3-pytest-timeout 236s python3-setuptools-scm python3-toml python3-wheel python3-xopen 236s python3.13-dev rpcsvc-proto zlib1g-dev 236s 0 upgraded, 77 newly installed, 0 to remove and 0 not upgraded. 236s Need to get 66.6 MB of archives. 236s After this operation, 198 MB of additional disk space will be used. 236s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf pigz armhf 2.8-1 [59.8 kB] 236s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf m4 armhf 1.4.19-7 [238 kB] 236s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf autoconf all 2.72-3ubuntu1 [383 kB] 237s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf autotools-dev all 20220109.1 [44.9 kB] 237s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf automake all 1:1.17-3ubuntu1 [572 kB] 238s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf autopoint all 0.23.1-1 [619 kB] 238s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-dev-bin armhf 2.41-1ubuntu2 [23.0 kB] 238s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.14.0-10.10 [1683 kB] 240s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.38-1 [120 kB] 240s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 240s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6-dev armhf 2.41-1ubuntu2 [1396 kB] 242s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB] 242s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 242s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [9220 kB] 253s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-17ubuntu3 [1030 B] 253s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [5578 B] 253s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.2.0-1ubuntu1 [22.4 kB] 253s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 15-20250222-0ubuntu1 [38.9 kB] 253s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 253s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 15-20250222-0ubuntu1 [2955 kB] 256s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 15-20250222-0ubuntu1 [1191 kB] 258s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-17ubuntu3 [897 kB] 260s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [18.0 MB] 280s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14 armhf 14.2.0-17ubuntu3 [506 kB] 280s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [1218 B] 280s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf gcc armhf 4:14.2.0-1ubuntu1 [5004 B] 280s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-17ubuntu3 [2573 kB] 283s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [10.5 MB] 295s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14 armhf 14.2.0-17ubuntu3 [21.8 kB] 295s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf g++-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [966 B] 295s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf g++ armhf 4:14.2.0-1ubuntu1 [1084 B] 295s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf build-essential armhf 12.10ubuntu1 [4928 B] 295s Get:33 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-xopen all 1.7.0-3 [17.2 kB] 295s Get:34 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-dnaio armhf 1.2.3-1build1 [78.6 kB] 296s Get:35 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cutadapt armhf 4.7-2build2 [187 kB] 296s Get:36 http://ftpmaster.internal/ubuntu plucky/universe armhf cutadapt all 4.7-2build2 [6774 B] 296s Get:37 http://ftpmaster.internal/ubuntu plucky/universe armhf cython3 armhf 3.0.11+dfsg-2ubuntu2 [2469 kB] 299s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 299s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libtool all 2.5.4-4 [168 kB] 299s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf dh-autoreconf all 20 [16.1 kB] 299s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] 299s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 299s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf dh-strip-nondeterminism all 1.14.1-2 [5064 B] 299s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 299s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf debugedit armhf 1:5.1-2 [46.7 kB] 300s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf dwz armhf 0.15-1build6 [116 kB] 300s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf gettext armhf 0.23.1-1 [1053 kB] 301s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] 301s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf po-debconf all 1.0.21+nmu1 [233 kB] 301s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf debhelper all 13.24.1ubuntu2 [895 kB] 302s Get:51 http://ftpmaster.internal/ubuntu plucky/universe armhf dh-python all 6.20250308 [118 kB] 302s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libexpat1-dev armhf 2.6.4-1 [121 kB] 302s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 303s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 303s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-sphinxdoc all 8.1.3-4 [30.9 kB] 303s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13 armhf 3.13.2-2 [2079 kB] 306s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1ubuntu1 [880 kB] 306s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-dev armhf 3.13.2-2 [4265 kB] 311s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3-dev armhf 3.13.2-2 [10.7 kB] 311s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3-all-dev armhf 3.13.2-2 [910 B] 311s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf pybuild-plugin-autopkgtest all 6.20250308 [1744 B] 311s Get:62 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 311s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-toml all 0.10.2-1 [16.5 kB] 311s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-wheel all 0.45.1-1 [57.7 kB] 311s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-build all 1.2.2-1 [31.0 kB] 311s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 311s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf pybuild-plugin-pyproject all 6.20250308 [1726 B] 311s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.13.2-2 [886 B] 311s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-dev armhf 3.13.2-2 [509 kB] 312s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dev armhf 3.13.2-2 [26.7 kB] 312s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all-dev armhf 3.13.2-2 [912 B] 312s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 312s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 312s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.5-1 [252 kB] 312s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-mock all 3.14.0-2 [11.7 kB] 312s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-timeout all 2.3.1-1 [22.1 kB] 312s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-setuptools-scm all 8.2.0-1 [32.5 kB] 313s Fetched 66.6 MB in 1min 16s (871 kB/s) 313s Selecting previously unselected package pigz. 313s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 313s Preparing to unpack .../00-pigz_2.8-1_armhf.deb ... 313s Unpacking pigz (2.8-1) ... 313s Selecting previously unselected package m4. 313s Preparing to unpack .../01-m4_1.4.19-7_armhf.deb ... 313s Unpacking m4 (1.4.19-7) ... 313s Selecting previously unselected package autoconf. 313s Preparing to unpack .../02-autoconf_2.72-3ubuntu1_all.deb ... 313s Unpacking autoconf (2.72-3ubuntu1) ... 313s Selecting previously unselected package autotools-dev. 313s Preparing to unpack .../03-autotools-dev_20220109.1_all.deb ... 313s Unpacking autotools-dev (20220109.1) ... 313s Selecting previously unselected package automake. 313s Preparing to unpack .../04-automake_1%3a1.17-3ubuntu1_all.deb ... 313s Unpacking automake (1:1.17-3ubuntu1) ... 313s Selecting previously unselected package autopoint. 313s Preparing to unpack .../05-autopoint_0.23.1-1_all.deb ... 313s Unpacking autopoint (0.23.1-1) ... 313s Selecting previously unselected package libc-dev-bin. 313s Preparing to unpack .../06-libc-dev-bin_2.41-1ubuntu2_armhf.deb ... 313s Unpacking libc-dev-bin (2.41-1ubuntu2) ... 313s Selecting previously unselected package linux-libc-dev:armhf. 313s Preparing to unpack .../07-linux-libc-dev_6.14.0-10.10_armhf.deb ... 313s Unpacking linux-libc-dev:armhf (6.14.0-10.10) ... 313s Selecting previously unselected package libcrypt-dev:armhf. 313s Preparing to unpack .../08-libcrypt-dev_1%3a4.4.38-1_armhf.deb ... 313s Unpacking libcrypt-dev:armhf (1:4.4.38-1) ... 313s Selecting previously unselected package rpcsvc-proto. 313s Preparing to unpack .../09-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 313s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 313s Selecting previously unselected package libc6-dev:armhf. 313s Preparing to unpack .../10-libc6-dev_2.41-1ubuntu2_armhf.deb ... 313s Unpacking libc6-dev:armhf (2.41-1ubuntu2) ... 314s Selecting previously unselected package libisl23:armhf. 314s Preparing to unpack .../11-libisl23_0.27-1_armhf.deb ... 314s Unpacking libisl23:armhf (0.27-1) ... 314s Selecting previously unselected package libmpc3:armhf. 314s Preparing to unpack .../12-libmpc3_1.3.1-1build2_armhf.deb ... 314s Unpacking libmpc3:armhf (1.3.1-1build2) ... 314s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 314s Preparing to unpack .../13-cpp-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 314s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 314s Selecting previously unselected package cpp-14. 314s Preparing to unpack .../14-cpp-14_14.2.0-17ubuntu3_armhf.deb ... 314s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 314s Selecting previously unselected package cpp-arm-linux-gnueabihf. 314s Preparing to unpack .../15-cpp-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 314s Unpacking cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 314s Selecting previously unselected package cpp. 314s Preparing to unpack .../16-cpp_4%3a14.2.0-1ubuntu1_armhf.deb ... 314s Unpacking cpp (4:14.2.0-1ubuntu1) ... 314s Selecting previously unselected package libcc1-0:armhf. 314s Preparing to unpack .../17-libcc1-0_15-20250222-0ubuntu1_armhf.deb ... 314s Unpacking libcc1-0:armhf (15-20250222-0ubuntu1) ... 314s Selecting previously unselected package libgomp1:armhf. 314s Preparing to unpack .../18-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 314s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 314s Selecting previously unselected package libasan8:armhf. 314s Preparing to unpack .../19-libasan8_15-20250222-0ubuntu1_armhf.deb ... 314s Unpacking libasan8:armhf (15-20250222-0ubuntu1) ... 314s Selecting previously unselected package libubsan1:armhf. 314s Preparing to unpack .../20-libubsan1_15-20250222-0ubuntu1_armhf.deb ... 314s Unpacking libubsan1:armhf (15-20250222-0ubuntu1) ... 314s Selecting previously unselected package libgcc-14-dev:armhf. 314s Preparing to unpack .../21-libgcc-14-dev_14.2.0-17ubuntu3_armhf.deb ... 314s Unpacking libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 314s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 314s Preparing to unpack .../22-gcc-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 314s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 315s Selecting previously unselected package gcc-14. 315s Preparing to unpack .../23-gcc-14_14.2.0-17ubuntu3_armhf.deb ... 315s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 315s Selecting previously unselected package gcc-arm-linux-gnueabihf. 315s Preparing to unpack .../24-gcc-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 315s Unpacking gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 315s Selecting previously unselected package gcc. 315s Preparing to unpack .../25-gcc_4%3a14.2.0-1ubuntu1_armhf.deb ... 315s Unpacking gcc (4:14.2.0-1ubuntu1) ... 315s Selecting previously unselected package libstdc++-14-dev:armhf. 315s Preparing to unpack .../26-libstdc++-14-dev_14.2.0-17ubuntu3_armhf.deb ... 315s Unpacking libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 315s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 315s Preparing to unpack .../27-g++-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 315s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 316s Selecting previously unselected package g++-14. 316s Preparing to unpack .../28-g++-14_14.2.0-17ubuntu3_armhf.deb ... 316s Unpacking g++-14 (14.2.0-17ubuntu3) ... 316s Selecting previously unselected package g++-arm-linux-gnueabihf. 316s Preparing to unpack .../29-g++-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 316s Unpacking g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 316s Selecting previously unselected package g++. 316s Preparing to unpack .../30-g++_4%3a14.2.0-1ubuntu1_armhf.deb ... 316s Unpacking g++ (4:14.2.0-1ubuntu1) ... 316s Selecting previously unselected package build-essential. 316s Preparing to unpack .../31-build-essential_12.10ubuntu1_armhf.deb ... 316s Unpacking build-essential (12.10ubuntu1) ... 316s Selecting previously unselected package python3-xopen. 316s Preparing to unpack .../32-python3-xopen_1.7.0-3_all.deb ... 316s Unpacking python3-xopen (1.7.0-3) ... 316s Selecting previously unselected package python3-dnaio. 316s Preparing to unpack .../33-python3-dnaio_1.2.3-1build1_armhf.deb ... 316s Unpacking python3-dnaio (1.2.3-1build1) ... 316s Selecting previously unselected package python3-cutadapt. 316s Preparing to unpack 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libarchive-zip-perl. 316s Preparing to unpack .../40-libarchive-zip-perl_1.68-1_all.deb ... 316s Unpacking libarchive-zip-perl (1.68-1) ... 316s Selecting previously unselected package libfile-stripnondeterminism-perl. 316s Preparing to unpack .../41-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 316s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 316s Selecting previously unselected package dh-strip-nondeterminism. 316s Preparing to unpack .../42-dh-strip-nondeterminism_1.14.1-2_all.deb ... 316s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 316s Selecting previously unselected package libdw1t64:armhf. 316s Preparing to unpack .../43-libdw1t64_0.192-4_armhf.deb ... 316s Unpacking libdw1t64:armhf (0.192-4) ... 316s Selecting previously unselected package debugedit. 316s Preparing to unpack .../44-debugedit_1%3a5.1-2_armhf.deb ... 316s Unpacking debugedit (1:5.1-2) ... 316s Selecting previously unselected package dwz. 316s Preparing to unpack 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Preparing to unpack .../51-libexpat1-dev_2.6.4-1_armhf.deb ... 317s Unpacking libexpat1-dev:armhf (2.6.4-1) ... 317s Selecting previously unselected package libjs-jquery. 317s Preparing to unpack .../52-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 317s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 317s Selecting previously unselected package libjs-underscore. 317s Preparing to unpack .../53-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 317s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 317s Selecting previously unselected package libjs-sphinxdoc. 317s Preparing to unpack .../54-libjs-sphinxdoc_8.1.3-4_all.deb ... 317s Unpacking libjs-sphinxdoc (8.1.3-4) ... 317s Selecting previously unselected package libpython3.13:armhf. 317s Preparing to unpack .../55-libpython3.13_3.13.2-2_armhf.deb ... 317s Unpacking libpython3.13:armhf (3.13.2-2) ... 317s Selecting previously unselected package zlib1g-dev:armhf. 317s Preparing to unpack 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previously unselected package python3-pluggy. 318s Preparing to unpack .../72-python3-pluggy_1.5.0-1_all.deb ... 318s Unpacking python3-pluggy (1.5.0-1) ... 318s Selecting previously unselected package python3-pytest. 318s Preparing to unpack .../73-python3-pytest_8.3.5-1_all.deb ... 318s Unpacking python3-pytest (8.3.5-1) ... 318s Selecting previously unselected package python3-pytest-mock. 318s Preparing to unpack .../74-python3-pytest-mock_3.14.0-2_all.deb ... 318s Unpacking python3-pytest-mock (3.14.0-2) ... 318s Selecting previously unselected package python3-pytest-timeout. 318s Preparing to unpack .../75-python3-pytest-timeout_2.3.1-1_all.deb ... 318s Unpacking python3-pytest-timeout (2.3.1-1) ... 318s Selecting previously unselected package python3-setuptools-scm. 318s Preparing to unpack .../76-python3-setuptools-scm_8.2.0-1_all.deb ... 318s Unpacking python3-setuptools-scm (8.2.0-1) ... 318s Setting up libpython3.13:armhf (3.13.2-2) ... 318s Setting up dh-python (6.20250308) ... 318s Setting up python3-iniconfig (1.1.1-2) ... 319s Setting up libarchive-zip-perl (1.68-1) ... 319s Setting up libdebhelper-perl (13.24.1ubuntu2) ... 319s Setting up linux-libc-dev:armhf (6.14.0-10.10) ... 319s Setting up m4 (1.4.19-7) ... 319s Setting up python3-all (3.13.2-2) ... 319s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 319s Setting up python3-wheel (0.45.1-1) ... 319s Setting up python3-setuptools-scm (8.2.0-1) ... 319s Setting up libdw1t64:armhf (0.192-4) ... 319s Setting up autotools-dev (20220109.1) ... 319s Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... 319s Setting up python3-pyproject-hooks (1.2.0-1) ... 319s Setting up libmpc3:armhf (1.3.1-1build2) ... 319s Setting up cython3 (3.0.11+dfsg-2ubuntu2) ... 320s Setting up autopoint (0.23.1-1) ... 320s Setting up python3-toml (0.10.2-1) ... 320s Setting up python3-installer (0.7.0+dfsg1-3) ... 321s Setting up autoconf (2.72-3ubuntu1) ... 321s Setting up python3-pluggy (1.5.0-1) ... 321s Setting up libubsan1:armhf (15-20250222-0ubuntu1) ... 321s Setting up dwz (0.15-1build6) ... 321s Setting up pigz (2.8-1) ... 321s Setting up libcrypt-dev:armhf (1:4.4.38-1) ... 321s Setting up libasan8:armhf (15-20250222-0ubuntu1) ... 321s Setting up debugedit (1:5.1-2) ... 321s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 321s Setting up libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 321s Setting up libisl23:armhf (0.27-1) ... 321s Setting up python3-build (1.2.2-1) ... 321s Setting up libc-dev-bin (2.41-1ubuntu2) ... 321s Setting up libcc1-0:armhf (15-20250222-0ubuntu1) ... 321s Setting up cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 321s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 321s Setting up automake (1:1.17-3ubuntu1) ... 321s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 321s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 321s Setting up gettext (0.23.1-1) ... 321s Setting up pybuild-plugin-pyproject (6.20250308) ... 321s Setting up python3-pytest (8.3.5-1) ... 322s Setting up gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 322s Setting up intltool-debian (0.35.0+20060710.6) ... 322s Setting up python3-xopen (1.7.0-3) ... 322s Setting up libjs-sphinxdoc (8.1.3-4) ... 322s Setting up cpp-14 (14.2.0-17ubuntu3) ... 322s Setting up dh-strip-nondeterminism (1.14.1-2) ... 322s Setting up python3-pytest-mock (3.14.0-2) ... 322s Setting up libc6-dev:armhf (2.41-1ubuntu2) ... 322s Setting up libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 322s Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 322s Setting up python3-dnaio (1.2.3-1build1) ... 322s Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 322s Setting up g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 322s Setting up python3-pytest-timeout (2.3.1-1) ... 322s Setting up po-debconf (1.0.21+nmu1) ... 322s Setting up gcc-14 (14.2.0-17ubuntu3) ... 322s Setting up libexpat1-dev:armhf (2.6.4-1) ... 322s Setting up python3-cutadapt (4.7-2build2) ... 323s Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 323s Setting up cpp (4:14.2.0-1ubuntu1) ... 323s Setting up g++-14 (14.2.0-17ubuntu3) ... 323s Setting up g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 323s Setting up libtool (2.5.4-4) ... 323s Setting up cutadapt (4.7-2build2) ... 323s Setting up gcc (4:14.2.0-1ubuntu1) ... 323s Setting up dh-autoreconf (20) ... 323s Setting up libpython3.13-dev:armhf (3.13.2-2) ... 323s Setting up g++ (4:14.2.0-1ubuntu1) ... 323s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 323s Setting up build-essential (12.10ubuntu1) ... 323s Setting up libpython3-dev:armhf (3.13.2-2) ... 323s Setting up python3.13-dev (3.13.2-2) ... 323s Setting up debhelper (13.24.1ubuntu2) ... 323s Setting up libpython3-all-dev:armhf (3.13.2-2) ... 323s Setting up python3-dev (3.13.2-2) ... 323s Setting up python3-all-dev (3.13.2-2) ... 323s Setting up pybuild-plugin-autopkgtest (6.20250308) ... 323s Processing triggers for install-info (7.1.1-1) ... 323s Processing triggers for libc-bin (2.41-1ubuntu2) ... 323s Processing triggers for man-db (2.13.0-1) ... 340s autopkgtest [15:47:28]: test pybuild-autopkgtest: pybuild-autopkgtest 340s autopkgtest [15:47:28]: test pybuild-autopkgtest: [----------------------- 347s pybuild-autopkgtest 347s I: pybuild base:311: cd /tmp/autopkgtest.OPPiMd/autopkgtest_tmp/build; python3.13 -m pytest tests 348s ============================= test session starts ============================== 348s platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0 348s rootdir: /tmp/autopkgtest.OPPiMd/autopkgtest_tmp/build 348s configfile: pyproject.toml 348s plugins: typeguard-4.4.2, mock-3.14.0, timeout-2.3.1 348s collected 669 items 348s 348s tests/test_adapters.py ......................................... [ 6%] 349s tests/test_align.py .................................................... [ 13%] 349s ... [ 14%] 350s tests/test_api.py ...... [ 15%] 353s tests/test_command.py ............ [ 17%] 355s tests/test_commandline.py .............................................. [ 23%] 359s ........................................................................ [ 34%] 362s .............................................................. [ 43%] 362s tests/test_files.py ......... [ 45%] 363s tests/test_kmer_finder.py .................... [ 48%] 363s tests/test_kmer_heuristic.py ............... [ 50%] 363s tests/test_main.py .... [ 51%] 363s tests/test_modifiers.py ....................................... [ 56%] 369s tests/test_paired.py ................................................... [ 64%] 372s ........................................................................ [ 75%] 375s ....................................................... [ 83%] 376s tests/test_parser.py ................................................. [ 90%] 376s tests/test_predicates.py ................. [ 93%] 376s tests/test_qualtrim.py ............................ [ 97%] 376s tests/test_report.py .. [ 97%] 376s tests/test_stats.py ... [ 98%] 376s tests/test_testutils.py .. [ 98%] 376s tests/test_tokenizer.py .. [ 98%] 376s tests/test_trim.py ... [ 99%] 376s tests/test_utils.py .... [100%] 376s 376s ============================= 669 passed in 28.55s ============================= 377s autopkgtest [15:48:05]: test pybuild-autopkgtest: -----------------------] 381s pybuild-autopkgtest PASS 381s autopkgtest [15:48:09]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 386s autopkgtest [15:48:13]: @@@@@@@@@@@@@@@@@@@@ summary 386s pybuild-autopkgtest PASS