0s autopkgtest [21:22:07]: starting date and time: 2024-11-13 21:22:07+0000 0s autopkgtest [21:22:07]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [21:22:07]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g4g87fsu/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-bioframe --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.141 lxd-armhf-10.145.243.141:autopkgtest/ubuntu/plucky/armhf 53s autopkgtest [21:23:00]: testbed dpkg architecture: armhf 55s autopkgtest [21:23:02]: testbed apt version: 2.9.8 55s autopkgtest [21:23:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 63s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 63s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 63s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [970 kB] 63s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [104 kB] 63s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [662 kB] 63s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 64s Fetched 1951 kB in 1s (2013 kB/s) 64s Reading package lists... 82s tee: /proc/self/fd/2: Permission denied 103s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 103s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 104s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 105s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s Calculating upgrade... 106s The following packages were automatically installed and are no longer required: 106s libperl5.38t64 perl-modules-5.38 python3-netifaces 106s Use 'apt autoremove' to remove them. 106s The following NEW packages will be installed: 106s libperl5.40 perl-modules-5.40 python3.13-gdbm systemd-cryptsetup 106s The following packages will be upgraded: 106s apport apport-core-dump-handler base-files base-passwd bash-completion 106s dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info 106s install-info iproute2 libarchive13t64 libatomic1 libattr1 106s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 106s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 106s libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libdb5.3t64 106s libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 libevdev2 106s libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 libgnutls30t64 106s libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common 106s libkeyutils1 libldap-common libldap2 liblocale-gettext-perl libmaxminddb0 106s libmnl0 libnetfilter-conntrack3 libnetplan1 libnewt0.52 libnghttp2-14 106s libnspr4 libnss-systemd libnvme1t64 libpam-systemd libpipeline1 libplymouth5 106s libpng16-16t64 libpopt0 libpython3-stdlib libpython3.12-minimal 106s libpython3.12-stdlib libsgutils2-1.46-2 libssh2-1t64 libstdc++6 106s libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl 106s libtraceevent1 libtraceevent1-plugin libudev1 libudisks2-0 liburcu8t64 106s libutempter0 libuv1t64 libx11-6 libx11-data libxau6 libxmlb2 mawk 106s motd-news-config nano netplan-generator netplan.io openssh-client 106s openssh-server openssh-sftp-server pci.ids perl perl-base plymouth 106s plymouth-theme-ubuntu-text python3 python3-apport python3-certifi 106s python3-cffi-backend python3-configobj python3-gdbm python3-gi python3-idna 106s python3-jaraco.functools python3-json-pointer python3-jsonpatch 106s python3-lazr.restfulclient python3-lazr.uri python3-minimal 106s python3-more-itertools python3-netplan python3-newt python3-oauthlib 106s python3-problem-report python3-typeguard python3-urllib3 python3-wadllib 106s python3-zipp python3.12 python3.12-gdbm python3.12-minimal sg3-utils 106s sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv 106s systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny 106s whiptail xxd 106s 143 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 45.5 MB of archives. 106s After this operation, 43.2 MB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B] 106s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB] 107s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB] 107s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB] 107s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 107s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 107s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 107s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 107s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB] 107s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 107s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 107s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB] 107s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB] 107s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB] 107s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB] 107s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB] 107s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 107s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB] 107s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB] 107s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB] 107s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB] 108s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB] 108s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB] 108s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB] 108s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB] 108s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB] 108s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB] 108s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB] 108s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB] 108s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB] 108s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB] 108s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB] 108s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB] 108s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB] 108s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB] 108s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB] 108s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB] 108s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B] 108s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB] 108s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB] 108s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB] 108s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB] 108s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 108s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 108s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB] 108s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB] 108s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 108s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 108s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 108s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB] 108s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB] 108s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 108s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB] 108s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB] 108s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 108s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB] 108s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB] 108s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB] 108s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB] 108s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB] 108s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 108s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 108s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB] 108s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 108s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 108s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 108s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 108s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB] 108s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 108s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B] 108s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB] 108s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 108s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB] 108s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB] 108s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB] 108s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 108s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB] 108s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB] 108s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 108s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 108s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB] 108s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB] 108s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB] 108s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB] 109s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 109s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 109s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB] 109s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B] 109s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB] 109s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB] 109s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 109s Get:95 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 109s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB] 109s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB] 109s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB] 109s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB] 109s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB] 109s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 109s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB] 109s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 109s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 109s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 109s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB] 109s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 109s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB] 109s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB] 109s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB] 109s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B] 109s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB] 109s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B] 109s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB] 109s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB] 109s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB] 109s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB] 109s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B] 110s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB] 110s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB] 110s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 110s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 110s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 110s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB] 110s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 110s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB] 110s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB] 110s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB] 110s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 110s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B] 110s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 110s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB] 110s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB] 110s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB] 110s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 110s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB] 110s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 110s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB] 110s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 110s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB] 110s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB] 110s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB] 110s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB] 110s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 110s Get:145 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 110s Get:146 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB] 110s Get:147 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB] 110s Preconfiguring packages ... 111s Fetched 45.5 MB in 4s (12.5 MB/s) 111s (Reading database ... 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(0.18+ds-1) ... 123s Setting up libevdev2:armhf (1.13.3+dfsg-1) ... 123s Setting up libldap2:armhf (2.6.8+dfsg-1~exp4ubuntu3) ... 123s Setting up info (7.1.1-1) ... 123s Setting up liblocale-gettext-perl (1.07-7build1) ... 123s Setting up libbpf1:armhf (1:1.5.0-1) ... 123s Setting up libudisks2-0:armhf (2.10.1-11ubuntu1) ... 123s Setting up python3.13-gdbm (3.13.0-2) ... 123s Setting up libpopt0:armhf (1.19+dfsg-2) ... 123s Setting up sg3-utils (1.46-3ubuntu5) ... 123s Setting up python3.12-minimal (3.12.7-3) ... 124s Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... 124s Setting up libblockdev-mdraid3:armhf (3.2.1-1) ... 124s Setting up libblockdev-crypto3:armhf (3.2.1-1) ... 124s Setting up libblockdev-swap3:armhf (3.2.1-1) ... 124s Setting up iproute2 (6.10.0-2ubuntu1) ... 124s Setting up openssh-client (1:9.7p1-7ubuntu5) ... 124s Setting up python3.12 (3.12.7-3) ... 125s Setting up libblockdev-loop3:armhf (3.2.1-1) ... 125s Setting up systemd (256.5-2ubuntu4) ... 126s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 126s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 126s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 126s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 126s Setting up libblockdev3:armhf (3.2.1-1) ... 126s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 126s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 126s Setting up libblockdev-part3:armhf (3.2.1-1) ... 126s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 126s update-initramfs: deferring update (trigger activated) 126s Setting up libperl5.40:armhf (5.40.0-7) ... 126s Setting up perl (5.40.0-7) ... 126s Setting up systemd-cryptsetup (256.5-2ubuntu4) ... 126s Setting up libnvme1t64 (1.11-1) ... 126s Setting up systemd-timesyncd (256.5-2ubuntu4) ... 127s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 127s Setting up udev (256.5-2ubuntu4) ... 128s Setting up libdpkg-perl (1.22.11ubuntu3) ... 128s Setting up libblockdev-nvme3:armhf (3.2.1-1) ... 128s Setting up libdrm2:armhf (2.4.123-1) ... 128s Setting up whiptail (0.52.24-2ubuntu4) ... 128s Setting up libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) ... 128s Setting up libplymouth5:armhf (24.004.60-1ubuntu11) ... 128s Setting up netplan-generator (1.1.1-1) ... 128s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 128s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 128s Setting up systemd-resolved (256.5-2ubuntu4) ... 128s Setting up openssh-sftp-server (1:9.7p1-7ubuntu5) ... 128s Setting up udisks2 (2.10.1-11ubuntu1) ... 128s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 128s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 128s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 128s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 128s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 128s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 128s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 128s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 128s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 128s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 128s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 128s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 128s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied 129s Setting up systemd-sysv (256.5-2ubuntu4) ... 129s Setting up openssh-server (1:9.7p1-7ubuntu5) ... 130s Setting up plymouth (24.004.60-1ubuntu11) ... 130s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 130s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 130s Setting up libfwupd2:armhf (1.9.26-2) ... 130s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ... 130s Setting up python3 (3.12.7-1) ... 131s Setting up python3-zipp (3.21.0-1) ... 131s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 131s Setting up dpkg-dev (1.22.11ubuntu3) ... 131s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ... 131s update-initramfs: deferring update (trigger activated) 131s Setting up python3-oauthlib (3.2.2-2) ... 131s Setting up python3-configobj (5.0.9-1) ... 131s Setting up python3-certifi (2024.8.30+dfsg-1) ... 131s Setting up python3-gi (3.50.0-3) ... 132s Setting up python3-idna (3.8-2) ... 132s Setting up python3-urllib3 (2.0.7-2ubuntu0.1) ... 132s Setting up python3-json-pointer (2.4-2) ... 132s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ... 132s Setting up fwupd (1.9.26-2) ... 133s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 133s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 133s fwupd.service is a disabled or a static unit not running, not starting it. 133s Setting up python3-cffi-backend:armhf (1.17.1-2) ... 133s Setting up python3-more-itertools (10.5.0-1) ... 133s Setting up python3-jaraco.functools (4.1.0-1) ... 133s Setting up python3-gdbm:armhf (3.12.7-1) ... 133s Setting up python3-problem-report (2.30.0-0ubuntu5) ... 133s Setting up ssh-import-id (5.11-0ubuntu3) ... 133s Setting up python3-jsonpatch (1.32-4) ... 133s Setting up python3-typeguard (4.4.1-1) ... 134s Setting up ufw (0.36.2-8) ... 134s Setting up python3-lazr.uri (1.0.6-4) ... 135s Setting up python3-apport (2.30.0-0ubuntu5) ... 135s Setting up python3-wadllib (2.0.0-1) ... 135s Setting up python3-netplan (1.1.1-1) ... 135s Setting up python3-lazr.restfulclient (0.14.6-2) ... 135s Setting up netplan.io (1.1.1-1) ... 135s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ... 136s Setting up apport (2.30.0-0ubuntu5) ... 136s Installing new version of config file /etc/apport/crashdb.conf ... 137s apport-autoreport.service is a disabled or a static unit not running, not starting it. 137s Processing triggers for dbus (1.14.10-4ubuntu5) ... 137s Processing triggers for shared-mime-info (2.4-5) ... 137s Processing triggers for install-info (7.1.1-1) ... 138s Processing triggers for initramfs-tools (0.142ubuntu34) ... 138s Processing triggers for libc-bin (2.40-1ubuntu3) ... 138s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 138s Processing triggers for man-db (2.12.1-3) ... 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 141s The following packages will be REMOVED: 141s libperl5.38t64* perl-modules-5.38* python3-netifaces* 141s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 141s After this operation, 41.7 MB disk space will be freed. 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61507 files and directories currently installed.) 141s Removing libperl5.38t64:armhf (5.38.2-5) ... 141s Removing perl-modules-5.38 (5.38.2-5) ... 141s Removing python3-netifaces:armhf (0.11.0-2build3) ... 141s Processing triggers for man-db (2.12.1-3) ... 141s Processing triggers for libc-bin (2.40-1ubuntu3) ... 143s autopkgtest [21:24:30]: rebooting testbed after setup commands that affected boot 212s autopkgtest [21:25:39]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 240s autopkgtest [21:26:07]: @@@@@@@@@@@@@@@@@@@@ apt-source python-bioframe 251s Get:1 http://ftpmaster.internal/ubuntu plucky/universe python-bioframe 0.4.1-1 (dsc) [1611 B] 251s Get:2 http://ftpmaster.internal/ubuntu plucky/universe python-bioframe 0.4.1-1 (tar) [816 kB] 251s Get:3 http://ftpmaster.internal/ubuntu plucky/universe python-bioframe 0.4.1-1 (diff) [3464 B] 251s gpgv: Signature made Mon Jun 12 17:55:46 2023 UTC 251s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 251s gpgv: Can't check signature: No public key 251s dpkg-source: warning: cannot verify inline signature for ./python-bioframe_0.4.1-1.dsc: no acceptable signature found 251s autopkgtest [21:26:18]: testing package python-bioframe version 0.4.1-1 254s autopkgtest [21:26:21]: build not needed 256s autopkgtest [21:26:23]: test run-unit-test: preparing testbed 267s Reading package lists... 267s Building dependency tree... 267s Reading state information... 268s Starting pkgProblemResolver with broken count: 0 268s Starting 2 pkgProblemResolver with broken count: 0 268s Done 268s The following additional packages will be installed: 268s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 268s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 268s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 268s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 268s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 268s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 268s libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 268s python3-appdirs python3-bioframe python3-brotli python3-contourpy 268s python3-cycler python3-dateutil python3-decorator python3-fonttools 269s python3-fs python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 269s python3-matplotlib python3-mpmath python3-numpy python3-packaging 269s python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk 269s python3-pluggy python3-pytest python3-scipy python3-six python3-sympy 269s python3-tk python3-tz python3-ufolib2 python3-unicodedata2 python3.12-tk 269s python3.13 python3.13-minimal python3.13-tk tk8.6-blt2.5 unicode-data 269s x11-common 269s Suggested packages: 269s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 269s python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript 269s gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc 269s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 269s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 269s python3-gmpy2 gcc gfortran python-numpy-doc python3-dev python-pandas-doc 269s python3-statsmodels python-pil-doc python-scipy-doc texlive-fonts-extra 269s python-sympy-doc tix python3-tk-dbg python3.13-venv python3.13-doc 269s binfmt-support 269s Recommended packages: 269s javascript-common python3-bs4 python3-cssselect python3-html5lib 269s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 269s python3-tables python3-olefile g++ | c++-compiler isympy-common 269s The following NEW packages will be installed: 269s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 269s fonts-lyx libblas3 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 269s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 269s libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 269s liblerc4 libopenjp2-7 libpython3.13-minimal libpython3.13-stdlib 269s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 269s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 269s python-matplotlib-data python3-all python3-appdirs python3-bioframe 269s python3-brotli python3-contourpy python3-cycler python3-dateutil 269s python3-decorator python3-fonttools python3-fs python3-iniconfig 269s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 269s python3-mpmath python3-numpy python3-packaging python3-pandas 269s python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy 269s python3-pytest python3-scipy python3-six python3-sympy python3-tk python3-tz 269s python3-ufolib2 python3-unicodedata2 python3.12-tk python3.13 269s python3.13-minimal python3.13-tk tk8.6-blt2.5 unicode-data x11-common 269s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. 269s Need to get 68.5 MB/68.5 MB of archives. 269s After this operation, 269 MB of additional disk space will be used. 269s Get:1 /tmp/autopkgtest.22cnP8/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [724 B] 269s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 269s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 269s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [909 kB] 269s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 269s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 269s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 269s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 269s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 269s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 269s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 269s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 269s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 269s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.15-1 [685 kB] 269s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7build1 [525 kB] 269s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-7build1 [4840 B] 270s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.2.1-1 [171 kB] 270s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 270s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 270s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 270s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 270s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 270s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 270s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 270s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 270s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 270s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 270s Get:28 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 270s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 270s Get:30 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 270s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 270s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 270s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 270s Get:34 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 270s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB] 270s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 270s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 270s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 270s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 270s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 270s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 270s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu1 [150 kB] 270s Get:43 http://ftpmaster.internal/ubuntu plucky/universe armhf python-matplotlib-data all 3.8.3-3 [2928 kB] 270s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 270s Get:45 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 270s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf python3-appdirs all 1.4.4-4 [10.9 kB] 270s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf python3-six all 1.16.0-7 [13.1 kB] 270s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dateutil all 2.9.0-2 [80.3 kB] 270s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 270s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu1 [428 kB] 270s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.7-3 [112 kB] 270s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-tk armhf 3.13.0-2 [103 kB] 270s Get:53 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-tk armhf 3.12.7-1 [9752 B] 270s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 10.4.0-1ubuntu1 [8848 B] 270s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 270s Get:56 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.0-2 [192 kB] 270s Get:57 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B] 270s Get:58 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build2 [321 kB] 270s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 270s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 271s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 271s Get:62 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 271s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB] 271s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2024.1-2 [31.4 kB] 271s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-4 [91.3 kB] 271s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.0-1 [1234 kB] 271s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.0.2+dfsg-1build4 [24.8 kB] 271s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-unicodedata2 armhf 15.1.0+ds-1build1 [361 kB] 271s Get:69 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB] 271s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.46.0-1build2 [1402 kB] 271s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-2 [57.0 kB] 271s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 271s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib armhf 3.8.3-3 [4500 kB] 271s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-5 [4728 kB] 271s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas all 2.2.3+dfsg-5 [3112 kB] 271s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-bioframe all 0.4.1-1 [76.1 kB] 271s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 271s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 271s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB] 272s Fetched 68.5 MB in 3s (26.6 MB/s) 272s Selecting previously unselected package libpython3.13-minimal:armhf. 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59567 files and directories currently installed.) 272s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ... 272s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 272s Selecting previously unselected package python3.13-minimal. 272s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ... 272s Unpacking python3.13-minimal (3.13.0-2) ... 272s Selecting previously unselected package libtcl8.6:armhf. 272s Preparing to unpack .../02-libtcl8.6_8.6.15+dfsg-2_armhf.deb ... 272s Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ... 272s Selecting previously unselected package libfreetype6:armhf. 272s Preparing to unpack .../03-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 272s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 272s Selecting previously unselected package fonts-dejavu-mono. 272s Preparing to unpack .../04-fonts-dejavu-mono_2.37-8_all.deb ... 272s Unpacking fonts-dejavu-mono (2.37-8) ... 272s Selecting previously unselected package fonts-dejavu-core. 272s Preparing to unpack .../05-fonts-dejavu-core_2.37-8_all.deb ... 272s Unpacking fonts-dejavu-core (2.37-8) ... 272s Selecting previously unselected package fontconfig-config. 272s Preparing to unpack .../06-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 272s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 272s Selecting previously unselected package libfontconfig1:armhf. 272s Preparing to unpack .../07-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 272s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 273s Selecting previously unselected package libxrender1:armhf. 273s Preparing to unpack .../08-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 273s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 273s Selecting previously unselected package libxft2:armhf. 273s Preparing to unpack .../09-libxft2_2.3.6-1build1_armhf.deb ... 273s Unpacking libxft2:armhf (2.3.6-1build1) ... 273s Selecting previously unselected package x11-common. 273s Preparing to unpack .../10-x11-common_1%3a7.7+23ubuntu3_all.deb ... 273s Unpacking x11-common (1:7.7+23ubuntu3) ... 273s Selecting previously unselected package libxss1:armhf. 273s Preparing to unpack .../11-libxss1_1%3a1.2.3-1build3_armhf.deb ... 273s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 273s Selecting previously unselected package libtk8.6:armhf. 273s Preparing to unpack .../12-libtk8.6_8.6.15-1_armhf.deb ... 273s Unpacking libtk8.6:armhf (8.6.15-1) ... 273s Selecting previously unselected package tk8.6-blt2.5. 273s Preparing to unpack .../13-tk8.6-blt2.5_2.5.3+dfsg-7build1_armhf.deb ... 273s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 273s Selecting previously unselected package blt. 273s Preparing to unpack .../14-blt_2.5.3+dfsg-7build1_armhf.deb ... 273s Unpacking blt (2.5.3+dfsg-7build1) ... 273s Selecting previously unselected package fonts-lyx. 273s Preparing to unpack .../15-fonts-lyx_2.4.2.1-1_all.deb ... 273s Unpacking fonts-lyx (2.4.2.1-1) ... 273s Selecting previously unselected package libblas3:armhf. 273s Preparing to unpack .../16-libblas3_3.12.0-3build2_armhf.deb ... 273s Unpacking libblas3:armhf (3.12.0-3build2) ... 273s Selecting previously unselected package libdeflate0:armhf. 273s Preparing to unpack .../17-libdeflate0_1.22-1_armhf.deb ... 273s Unpacking libdeflate0:armhf (1.22-1) ... 273s Selecting previously unselected package libgfortran5:armhf. 273s Preparing to unpack .../18-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 273s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 273s Selecting previously unselected package libgomp1:armhf. 273s Preparing to unpack .../19-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 273s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 273s Selecting previously unselected package libgraphite2-3:armhf. 273s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 273s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 273s Selecting previously unselected package libharfbuzz0b:armhf. 273s Preparing to unpack .../21-libharfbuzz0b_10.0.1-1_armhf.deb ... 273s Unpacking libharfbuzz0b:armhf (10.0.1-1) ... 273s Selecting previously unselected package libimagequant0:armhf. 273s Preparing to unpack .../22-libimagequant0_2.18.0-1build1_armhf.deb ... 273s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 273s Selecting previously unselected package libjpeg-turbo8:armhf. 273s Preparing to unpack .../23-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 273s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 273s Selecting previously unselected package libjpeg8:armhf. 273s Preparing to unpack .../24-libjpeg8_8c-2ubuntu11_armhf.deb ... 273s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 273s Selecting previously unselected package libjs-jquery. 273s Preparing to unpack .../25-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 273s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 273s Selecting previously unselected package libjs-jquery-ui. 273s Preparing to unpack .../26-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 273s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 273s Selecting previously unselected package liblapack3:armhf. 273s Preparing to unpack .../27-liblapack3_3.12.0-3build2_armhf.deb ... 273s Unpacking liblapack3:armhf (3.12.0-3build2) ... 273s Selecting previously unselected package liblbfgsb0:armhf. 273s Preparing to unpack .../28-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 273s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 273s Selecting previously unselected package liblcms2-2:armhf. 273s Preparing to unpack .../29-liblcms2-2_2.16-2_armhf.deb ... 273s Unpacking liblcms2-2:armhf (2.16-2) ... 273s Selecting previously unselected package liblerc4:armhf. 273s Preparing to unpack .../30-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 273s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 273s Selecting previously unselected package libpython3.13-stdlib:armhf. 273s Preparing to unpack .../31-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 273s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 273s Selecting previously unselected package libqhull-r8.0:armhf. 273s Preparing to unpack .../32-libqhull-r8.0_2020.2-6build1_armhf.deb ... 273s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 273s Selecting previously unselected package libraqm0:armhf. 273s Preparing to unpack .../33-libraqm0_0.10.1-1build1_armhf.deb ... 273s Unpacking libraqm0:armhf (0.10.1-1build1) ... 273s Selecting previously unselected package libsharpyuv0:armhf. 273s Preparing to unpack .../34-libsharpyuv0_1.4.0-0.1_armhf.deb ... 273s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 273s Selecting previously unselected package libjbig0:armhf. 273s Preparing to unpack .../35-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 273s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 273s Selecting previously unselected package libwebp7:armhf. 273s Preparing to unpack .../36-libwebp7_1.4.0-0.1_armhf.deb ... 273s Unpacking libwebp7:armhf (1.4.0-0.1) ... 273s Selecting previously unselected package libtiff6:armhf. 273s Preparing to unpack .../37-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 273s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 273s Selecting previously unselected package libwebpdemux2:armhf. 274s Preparing to unpack .../38-libwebpdemux2_1.4.0-0.1_armhf.deb ... 274s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 274s Selecting previously unselected package libwebpmux3:armhf. 274s Preparing to unpack .../39-libwebpmux3_1.4.0-0.1_armhf.deb ... 274s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 274s Selecting previously unselected package libxslt1.1:armhf. 274s Preparing to unpack .../40-libxslt1.1_1.1.39-0exp1ubuntu1_armhf.deb ... 274s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 274s Selecting previously unselected package python-matplotlib-data. 274s Preparing to unpack .../41-python-matplotlib-data_3.8.3-3_all.deb ... 274s Unpacking python-matplotlib-data (3.8.3-3) ... 274s Selecting previously unselected package python3.13. 274s Preparing to unpack .../42-python3.13_3.13.0-2_armhf.deb ... 274s Unpacking python3.13 (3.13.0-2) ... 274s Selecting previously unselected package python3-all. 274s Preparing to unpack .../43-python3-all_3.12.7-1_armhf.deb ... 274s Unpacking python3-all (3.12.7-1) ... 274s Selecting previously unselected package python3-appdirs. 274s Preparing to unpack .../44-python3-appdirs_1.4.4-4_all.deb ... 274s Unpacking python3-appdirs (1.4.4-4) ... 274s Selecting previously unselected package python3-six. 274s Preparing to unpack .../45-python3-six_1.16.0-7_all.deb ... 274s Unpacking python3-six (1.16.0-7) ... 274s Selecting previously unselected package python3-dateutil. 274s Preparing to unpack .../46-python3-dateutil_2.9.0-2_all.deb ... 274s Unpacking python3-dateutil (2.9.0-2) ... 274s Selecting previously unselected package libopenjp2-7:armhf. 274s Preparing to unpack .../47-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ... 274s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 274s Selecting previously unselected package python3-pil:armhf. 274s Preparing to unpack .../48-python3-pil_10.4.0-1ubuntu1_armhf.deb ... 274s Unpacking python3-pil:armhf (10.4.0-1ubuntu1) ... 274s Selecting previously unselected package python3.12-tk. 274s Preparing to unpack .../49-python3.12-tk_3.12.7-3_armhf.deb ... 274s Unpacking python3.12-tk (3.12.7-3) ... 274s Selecting previously unselected package python3.13-tk. 274s Preparing to unpack .../50-python3.13-tk_3.13.0-2_armhf.deb ... 274s Unpacking python3.13-tk (3.13.0-2) ... 274s Selecting previously unselected package python3-tk:armhf. 274s Preparing to unpack .../51-python3-tk_3.12.7-1_armhf.deb ... 274s Unpacking python3-tk:armhf (3.12.7-1) ... 274s Selecting previously unselected package python3-pil.imagetk:armhf. 274s Preparing to unpack .../52-python3-pil.imagetk_10.4.0-1ubuntu1_armhf.deb ... 274s Unpacking python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 274s Selecting previously unselected package python3-numpy. 274s Preparing to unpack .../53-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 274s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 274s Selecting previously unselected package python3-contourpy. 274s Preparing to unpack .../54-python3-contourpy_1.3.0-2_armhf.deb ... 274s Unpacking python3-contourpy (1.3.0-2) ... 274s Selecting previously unselected package python3-cycler. 274s Preparing to unpack .../55-python3-cycler_0.12.1-1_all.deb ... 274s Unpacking python3-cycler (0.12.1-1) ... 274s Selecting previously unselected package python3-brotli. 274s Preparing to unpack .../56-python3-brotli_1.1.0-2build2_armhf.deb ... 274s Unpacking python3-brotli (1.1.0-2build2) ... 274s Selecting previously unselected package python3-decorator. 274s Preparing to unpack .../57-python3-decorator_5.1.1-5_all.deb ... 274s Unpacking python3-decorator (5.1.1-5) ... 274s Selecting previously unselected package python3-scipy. 274s Preparing to unpack .../58-python3-scipy_1.13.1-5_armhf.deb ... 274s Unpacking python3-scipy (1.13.1-5) ... 275s Selecting previously unselected package python3-ufolib2. 275s Preparing to unpack .../59-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 275s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 275s Selecting previously unselected package python3-mpmath. 275s Preparing to unpack .../60-python3-mpmath_1.3.0-1_all.deb ... 275s Unpacking python3-mpmath (1.3.0-1) ... 275s Selecting previously unselected package python3-sympy. 275s Preparing to unpack .../61-python3-sympy_1.13.3-1_all.deb ... 275s Unpacking python3-sympy (1.13.3-1) ... 275s Selecting previously unselected package python3-tz. 275s Preparing to unpack .../62-python3-tz_2024.1-2_all.deb ... 275s Unpacking python3-tz (2024.1-2) ... 275s Selecting previously unselected package python3-fs. 275s Preparing to unpack .../63-python3-fs_2.4.16-4_all.deb ... 275s Unpacking python3-fs (2.4.16-4) ... 275s Selecting previously unselected package python3-lxml:armhf. 275s Preparing to unpack .../64-python3-lxml_5.3.0-1_armhf.deb ... 275s Unpacking python3-lxml:armhf (5.3.0-1) ... 276s Selecting previously unselected package python3-lz4. 276s Preparing to unpack .../65-python3-lz4_4.0.2+dfsg-1build4_armhf.deb ... 276s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 276s Selecting previously unselected package python3-unicodedata2. 276s Preparing to unpack .../66-python3-unicodedata2_15.1.0+ds-1build1_armhf.deb ... 276s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 276s Selecting previously unselected package unicode-data. 276s Preparing to unpack .../67-unicode-data_15.1.0-1_all.deb ... 276s Unpacking unicode-data (15.1.0-1) ... 276s Selecting previously unselected package python3-fonttools. 276s Preparing to unpack .../68-python3-fonttools_4.46.0-1build2_armhf.deb ... 276s Unpacking python3-fonttools (4.46.0-1build2) ... 276s Selecting previously unselected package python3-kiwisolver. 276s Preparing to unpack .../69-python3-kiwisolver_1.4.7-2_armhf.deb ... 276s Unpacking python3-kiwisolver (1.4.7-2) ... 276s Selecting previously unselected package python3-packaging. 276s Preparing to unpack .../70-python3-packaging_24.1-1_all.deb ... 276s Unpacking python3-packaging (24.1-1) ... 276s Selecting previously unselected package python3-matplotlib. 276s Preparing to unpack .../71-python3-matplotlib_3.8.3-3_armhf.deb ... 276s Unpacking python3-matplotlib (3.8.3-3) ... 276s Selecting previously unselected package python3-pandas-lib:armhf. 276s Preparing to unpack .../72-python3-pandas-lib_2.2.3+dfsg-5_armhf.deb ... 276s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-5) ... 276s Selecting previously unselected package python3-pandas. 276s Preparing to unpack .../73-python3-pandas_2.2.3+dfsg-5_all.deb ... 276s Unpacking python3-pandas (2.2.3+dfsg-5) ... 277s Selecting previously unselected package python3-bioframe. 277s Preparing to unpack .../74-python3-bioframe_0.4.1-1_all.deb ... 277s Unpacking python3-bioframe (0.4.1-1) ... 277s Selecting previously unselected package python3-iniconfig. 277s Preparing to unpack .../75-python3-iniconfig_1.1.1-2_all.deb ... 277s Unpacking python3-iniconfig (1.1.1-2) ... 277s Selecting previously unselected package python3-pluggy. 277s Preparing to unpack .../76-python3-pluggy_1.5.0-1_all.deb ... 277s Unpacking python3-pluggy (1.5.0-1) ... 277s Selecting previously unselected package python3-pytest. 277s Preparing to unpack .../77-python3-pytest_8.3.3-1_all.deb ... 277s Unpacking python3-pytest (8.3.3-1) ... 277s Selecting previously unselected package autopkgtest-satdep. 277s Preparing to unpack .../78-1-autopkgtest-satdep.deb ... 277s Unpacking autopkgtest-satdep (0) ... 277s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 277s Setting up liblcms2-2:armhf (2.16-2) ... 277s Setting up python3-iniconfig (1.1.1-2) ... 277s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 277s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 277s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 277s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 277s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 277s Setting up fonts-lyx (2.4.2.1-1) ... 277s Setting up x11-common (1:7.7+23ubuntu3) ... 278s Setting up libdeflate0:armhf (1.22-1) ... 278s Setting up libqhull-r8.0:armhf (2020.2-6build1) ... 278s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 278s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 278s Setting up python3-tz (2024.1-2) ... 278s Setting up unicode-data (15.1.0-1) ... 278s Setting up python3-six (1.16.0-7) ... 278s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 278s Setting up python3-decorator (5.1.1-5) ... 278s Setting up libblas3:armhf (3.12.0-3build2) ... 278s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 278s Setting up python3-packaging (24.1-1) ... 278s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 278s Setting up python3-brotli (1.1.0-2build2) ... 279s Setting up python3-cycler (0.12.1-1) ... 279s Setting up libimagequant0:armhf (2.18.0-1build1) ... 279s Setting up fonts-dejavu-mono (2.37-8) ... 279s Setting up python3-kiwisolver (1.4.7-2) ... 279s Setting up libtcl8.6:armhf (8.6.15+dfsg-2) ... 279s Setting up fonts-dejavu-core (2.37-8) ... 279s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 279s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 279s Setting up python3-pluggy (1.5.0-1) ... 279s Setting up libwebp7:armhf (1.4.0-0.1) ... 279s Setting up libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 279s Setting up libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 279s Setting up python3.13-minimal (3.13.0-2) ... 280s Setting up libharfbuzz0b:armhf (10.0.1-1) ... 280s Setting up python3-dateutil (2.9.0-2) ... 280s Setting up libxss1:armhf (1:1.2.3-1build3) ... 280s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 280s Setting up python3-mpmath (1.3.0-1) ... 281s Setting up python-matplotlib-data (3.8.3-3) ... 281s Setting up libwebpmux3:armhf (1.4.0-0.1) ... 281s Setting up python3-appdirs (1.4.4-4) ... 282s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... 282s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 282s Setting up python3-sympy (1.13.3-1) ... 296s Setting up liblapack3:armhf (3.12.0-3build2) ... 296s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 296s Setting up python3.13 (3.13.0-2) ... 297s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 297s Setting up python3-pytest (8.3.3-1) ... 298s Setting up libwebpdemux2:armhf (1.4.0-0.1) ... 298s Setting up python3-all (3.12.7-1) ... 298s Setting up python3-fs (2.4.16-4) ... 298s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 298s Setting up libraqm0:armhf (0.10.1-1build1) ... 298s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 302s Setting up python3-lxml:armhf (5.3.0-1) ... 303s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 303s Setting up python3-contourpy (1.3.0-2) ... 303s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 303s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 303s Setting up libxft2:armhf (2.3.6-1build1) ... 303s Setting up python3-scipy (1.13.1-5) ... 311s Setting up libtk8.6:armhf (8.6.15-1) ... 311s Setting up python3-pandas-lib:armhf (2.2.3+dfsg-5) ... 311s Setting up python3.12-tk (3.12.7-3) ... 311s Setting up python3.13-tk (3.13.0-2) ... 311s Setting up python3-pil:armhf (10.4.0-1ubuntu1) ... 311s Setting up python3-pandas (2.2.3+dfsg-5) ... 323s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 323s Setting up blt (2.5.3+dfsg-7build1) ... 323s Setting up python3-tk:armhf (3.12.7-1) ... 323s Setting up python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 323s Setting up python3-fonttools (4.46.0-1build2) ... 325s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 325s Setting up python3-matplotlib (3.8.3-3) ... 329s Setting up python3-bioframe (0.4.1-1) ... 329s Setting up autopkgtest-satdep (0) ... 329s Processing triggers for libc-bin (2.40-1ubuntu3) ... 329s Processing triggers for systemd (256.5-2ubuntu4) ... 329s Processing triggers for man-db (2.12.1-3) ... 346s (Reading database ... 69239 files and directories currently installed.) 346s Removing autopkgtest-satdep (0) ... 352s autopkgtest [21:27:59]: test run-unit-test: [----------------------- 354s ============================= test session starts ============================== 354s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 354s cachedir: .pytest_cache 354s rootdir: /tmp/autopkgtest.22cnP8/autopkgtest_tmp 354s plugins: typeguard-4.4.1 354s collecting ... collected 0 items / 8 errors 354s 354s ==================================== ERRORS ==================================== 354s __________________ ERROR collecting tests/test_core_checks.py __________________ 354s ImportError while importing test module '/tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_core_checks.py'. 354s Hint: make sure your test modules/packages have valid Python names. 354s Traceback: 354s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 354s return _bootstrap._gcd_import(name[level:], package, level) 354s tests/test_core_checks.py:3: in 354s import pandas as pd 354s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 354s raise ImportError( 354s E ImportError: Unable to import required dependencies: 354s E numpy: Error importing numpy: you should not try to import numpy from 354s E its source directory; please exit the numpy source tree, and relaunch 354s E your python interpreter from there. 354s _______________ ERROR collecting tests/test_core_construction.py _______________ 354s ImportError while importing test module '/tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_core_construction.py'. 354s Hint: make sure your test modules/packages have valid Python names. 354s Traceback: 354s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 354s return _bootstrap._gcd_import(name[level:], package, level) 354s tests/test_core_construction.py:3: in 354s import pandas as pd 354s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 354s raise ImportError( 354s E ImportError: Unable to import required dependencies: 354s E numpy: Error importing numpy: you should not try to import numpy from 354s E its source directory; please exit the numpy source tree, and relaunch 354s E your python interpreter from there. 354s __________________ ERROR collecting tests/test_core_specs.py ___________________ 354s ImportError while importing test module '/tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_core_specs.py'. 354s Hint: make sure your test modules/packages have valid Python names. 354s Traceback: 354s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 354s return _bootstrap._gcd_import(name[level:], package, level) 354s tests/test_core_specs.py:3: in 354s import pandas as pd 354s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 354s raise ImportError( 354s E ImportError: Unable to import required dependencies: 354s E numpy: Error importing numpy: you should not try to import numpy from 354s E its source directory; please exit the numpy source tree, and relaunch 354s E your python interpreter from there. 354s ________________ ERROR collecting tests/test_core_stringops.py _________________ 354s ImportError while importing test module '/tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_core_stringops.py'. 354s Hint: make sure your test modules/packages have valid Python names. 354s Traceback: 354s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 354s return _bootstrap._gcd_import(name[level:], package, level) 354s tests/test_core_stringops.py:1: in 354s import pandas as pd 354s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 354s raise ImportError( 354s E ImportError: Unable to import required dependencies: 354s E numpy: Error importing numpy: you should not try to import numpy from 354s E its source directory; please exit the numpy source tree, and relaunch 354s E your python interpreter from there. 354s ____________________ ERROR collecting tests/test_extras.py _____________________ 354s ImportError while importing test module '/tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_extras.py'. 354s Hint: make sure your test modules/packages have valid Python names. 354s Traceback: 354s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 354s return _bootstrap._gcd_import(name[level:], package, level) 354s tests/test_extras.py:4: in 354s import pandas as pd 354s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 354s raise ImportError( 354s E ImportError: Unable to import required dependencies: 354s E numpy: Error importing numpy: you should not try to import numpy from 354s E its source directory; please exit the numpy source tree, and relaunch 354s E your python interpreter from there. 354s ______________________ ERROR collecting tests/test_io.py _______________________ 354s ImportError while importing test module '/tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_io.py'. 354s Hint: make sure your test modules/packages have valid Python names. 354s Traceback: 354s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 354s return _bootstrap._gcd_import(name[level:], package, level) 354s tests/test_io.py:3: in 354s import pandas as pd 354s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 354s raise ImportError( 354s E ImportError: Unable to import required dependencies: 354s E numpy: Error importing numpy: you should not try to import numpy from 354s E its source directory; please exit the numpy source tree, and relaunch 354s E your python interpreter from there. 354s ______________________ ERROR collecting tests/test_ops.py ______________________ 354s ImportError while importing test module '/tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_ops.py'. 354s Hint: make sure your test modules/packages have valid Python names. 354s Traceback: 354s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 354s return _bootstrap._gcd_import(name[level:], package, level) 354s tests/test_ops.py:3: in 354s import pandas as pd 354s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 354s raise ImportError( 354s E ImportError: Unable to import required dependencies: 354s E numpy: Error importing numpy: you should not try to import numpy from 354s E its source directory; please exit the numpy source tree, and relaunch 354s E your python interpreter from there. 354s __________________ ERROR collecting tests/test_ops_select.py ___________________ 354s ImportError while importing test module '/tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_ops_select.py'. 354s Hint: make sure your test modules/packages have valid Python names. 354s Traceback: 354s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 354s return _bootstrap._gcd_import(name[level:], package, level) 354s tests/test_ops_select.py:1: in 354s import pandas as pd 354s /usr/lib/python3/dist-packages/pandas/__init__.py:19: in 354s raise ImportError( 354s E ImportError: Unable to import required dependencies: 354s E numpy: Error importing numpy: you should not try to import numpy from 354s E its source directory; please exit the numpy source tree, and relaunch 354s E your python interpreter from there. 354s =============================== warnings summary =============================== 354s tests/test_io.py:23 354s /tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_io.py:23: SyntaxWarning: invalid escape sequence '\s' 354s assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3) 354s 354s tests/test_io.py:24 354s /tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_io.py:24: SyntaxWarning: invalid escape sequence '\s' 354s assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6) 354s 354s tests/test_io.py:25 354s /tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_io.py:25: SyntaxWarning: invalid escape sequence '\s' 354s assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12) 354s 354s tests/test_io.py:33 354s /tmp/autopkgtest.22cnP8/autopkgtest_tmp/tests/test_io.py:33: SyntaxWarning: invalid escape sequence '\s' 354s StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True 354s 354s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 354s =========================== short test summary info ============================ 354s ERROR tests/test_core_checks.py 354s ERROR tests/test_core_construction.py 354s ERROR tests/test_core_specs.py 354s ERROR tests/test_core_stringops.py 354s ERROR tests/test_extras.py 354s ERROR tests/test_io.py 354s ERROR tests/test_ops.py 354s ERROR tests/test_ops_select.py 354s !!!!!!!!!!!!!!!!!!! Interrupted: 8 errors during collection !!!!!!!!!!!!!!!!!!!! 354s ======================== 4 warnings, 8 errors in 0.47s ========================= 355s autopkgtest [21:28:02]: test run-unit-test: -----------------------] 359s run-unit-test FAIL non-zero exit status 2 359s autopkgtest [21:28:06]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 363s autopkgtest [21:28:10]: @@@@@@@@@@@@@@@@@@@@ summary 363s run-unit-test FAIL non-zero exit status 2