0s autopkgtest [15:34:19]: starting date and time: 2025-03-15 15:34:19+0000
0s autopkgtest [15:34:19]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
0s autopkgtest [15:34:19]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.j0rydk5s/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.115 lxd-armhf-10.145.243.115:autopkgtest/ubuntu/plucky/armhf
20s autopkgtest [15:34:39]: testbed dpkg architecture: armhf
22s autopkgtest [15:34:41]: testbed apt version: 2.9.33
26s autopkgtest [15:34:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup
28s autopkgtest [15:34:47]: testbed release detected to be: None
35s autopkgtest [15:34:54]: updating testbed package index (apt update)
37s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
37s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB]
38s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB]
38s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB]
38s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
38s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB]
39s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB]
39s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [81.0 kB]
39s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1944 B]
39s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B]
39s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [326 kB]
39s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [12.1 kB]
39s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B]
39s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [332 B]
39s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1400 kB]
41s Get:16 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB]
41s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB]
64s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB]
66s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB]
66s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B]
66s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB]
83s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB]
85s Fetched 41.0 MB in 47s (866 kB/s)
86s Reading package lists...
91s autopkgtest [15:35:50]: upgrading testbed (apt dist-upgrade and autopurge)
93s Reading package lists...
93s Building dependency tree...
93s Reading state information...
94s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
94s Starting 2 pkgProblemResolver with broken count: 0
94s Done
95s Entering ResolveByKeep
95s
95s Calculating upgrade...
96s The following packages will be upgraded:
96s libc-bin libc6 locales python3-jinja2 sos strace
96s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
96s Need to get 8642 kB of archives.
96s After this operation, 23.6 kB of additional disk space will be used.
96s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB]
99s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB]
100s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB]
105s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB]
106s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
106s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB]
106s Preconfiguring packages ...
107s Fetched 8642 kB in 11s (822 kB/s)
107s (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 64655 files and directories currently installed.)
107s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ...
107s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
107s Setting up libc6:armhf (2.41-1ubuntu2) ...
107s (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 64655 files and directories currently installed.)
107s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ...
107s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
107s Setting up libc-bin (2.41-1ubuntu2) ...
108s (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 64655 files and directories currently installed.)
108s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
108s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
108s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ...
108s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
108s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
108s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
108s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ...
108s Unpacking sos (4.9.0-5) over (4.9.0-4) ...
108s Setting up sos (4.9.0-5) ...
109s Setting up locales (2.41-1ubuntu2) ...
110s Generating locales (this might take a while)...
112s en_US.UTF-8... done
112s Generation complete.
112s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
112s Setting up strace (6.13+ds-1ubuntu1) ...
112s Processing triggers for man-db (2.13.0-1) ...
113s Processing triggers for systemd (257.3-1ubuntu3) ...
116s Reading package lists...
116s Building dependency tree...
116s Reading state information...
116s Starting pkgProblemResolver with broken count: 0
116s Starting 2 pkgProblemResolver with broken count: 0
116s Done
117s Solving dependencies...
117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
119s autopkgtest [15:36:18]: rebooting testbed after setup commands that affected boot
159s autopkgtest [15:36:58]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2
186s autopkgtest [15:37:25]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol
235s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (dsc) [2324 B]
235s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (tar) [22.0 MB]
235s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-3build2 (diff) [57.8 kB]
235s gpgv: Signature made Tue Mar 4 18:06:31 2025 UTC
235s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
235s gpgv: Can't check signature: No public key
235s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-3build2.dsc: no acceptable signature found
236s autopkgtest [15:38:15]: testing package pymol version 3.0.0+dfsg-3build2
238s autopkgtest [15:38:17]: build not needed
244s autopkgtest [15:38:23]: test command1: preparing testbed
245s Reading package lists...
246s Building dependency tree...
246s Reading state information...
246s Starting pkgProblemResolver with broken count: 0
246s Starting 2 pkgProblemResolver with broken count: 0
246s Done
247s The following NEW packages will be installed:
247s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0
247s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64
247s libdouble-conversion3 libegl-mesa0 libegl1 libfontconfig1 libfreetype6
247s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libgles2 libglew2.2 libglu1-mesa
247s libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b
247s libhdf5-310 libhdf5-hl-310 libice6 libinput-bin libinput10 libjpeg-turbo8
247s libjpeg8 liblapack3 libllvm19 libmd4c0 libmtdev1t64 libnetcdf22 libopengl0
247s libpcre2-16-0 libpython3.13 libqt5core5t64 libqt5dbus5t64 libqt5designer5
247s libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64
247s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64
247s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9
247s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri3-0 libxcb-glx0
247s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
247s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
247s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
247s libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium
247s pymol pymol-data python3-legacy-cgi python3-numpy python3-numpy-dev
247s python3-opengl python3-pymol python3-pyqt5 python3-pyqt5.qtopengl
247s python3-pyqt5.sip x11-common
247s 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded.
247s Need to get 71.2 MB of archives.
247s After this operation, 261 MB of additional disk space will be used.
247s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy-dev armhf 1:2.2.3+ds-5 [141 kB]
248s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB]
248s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB]
248s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB]
252s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:2.2.3+ds-5 [3725 kB]
258s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB]
258s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
259s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
260s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-2ubuntu1 [37.5 kB]
260s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-2ubuntu1 [114 kB]
261s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-2ubuntu1 [190 kB]
261s Get:12 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB]
261s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common-data armhf 0.8-16ubuntu1 [30.9 kB]
261s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common3 armhf 0.8-16ubuntu1 [20.2 kB]
261s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-client3 armhf 0.8-16ubuntu1 [24.1 kB]
261s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libcups2t64 armhf 2.4.11-0ubuntu2 [243 kB]
261s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf libdouble-conversion3 armhf 3.3.1-1 [39.1 kB]
261s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-server0 armhf 1.23.1-3 [30.3 kB]
261s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libllvm19 armhf 1:19.1.7-1ubuntu2 [27.8 MB]
322s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B]
322s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B]
322s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B]
322s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB]
322s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B]
322s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB]
322s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libxshmfence1 armhf 1.3-1build5 [4464 B]
322s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf mesa-libgallium armhf 25.0.1-2ubuntu1 [8255 kB]
338s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libgbm1 armhf 25.0.1-2ubuntu1 [29.1 kB]
338s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-client0 armhf 1.23.1-3 [23.3 kB]
338s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B]
338s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libegl-mesa0 armhf 25.0.1-2ubuntu1 [100 kB]
338s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libvulkan1 armhf 1.4.304.0-1 [127 kB]
338s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1-mesa-dri armhf 25.0.1-2ubuntu1 [31.9 kB]
338s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB]
338s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB]
338s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B]
338s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libglx-mesa0 armhf 25.0.1-2ubuntu1 [120 kB]
339s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB]
339s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1 armhf 1.7.0-1build1 [105 kB]
339s Get:40 http://ftpmaster.internal/ubuntu plucky/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB]
339s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB]
339s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB]
340s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB]
340s Get:44 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B]
340s Get:45 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB]
343s Get:46 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [58.8 kB]
343s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB]
343s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB]
343s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libwacom-common all 2.14.0-1 [103 kB]
343s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libwacom9 armhf 2.14.0-1 [23.6 kB]
344s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libinput-bin armhf 1.27.1-1 [25.9 kB]
344s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libmtdev1t64 armhf 1.1.7-1 [13.0 kB]
344s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libinput10 armhf 1.27.1-1 [124 kB]
344s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB]
344s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
344s Get:56 http://ftpmaster.internal/ubuntu plucky/universe armhf libmd4c0 armhf 0.5.2-2 [38.2 kB]
344s Get:57 http://ftpmaster.internal/ubuntu plucky/universe armhf libnetcdf22 armhf 1:4.9.3-1 [459 kB]
345s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-16-0 armhf 10.45-1 [207 kB]
345s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13 armhf 3.13.2-2 [2079 kB]
349s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5core5t64 armhf 5.15.15+dfsg-4ubuntu1 [1768 kB]
351s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5dbus5t64 armhf 5.15.15+dfsg-4ubuntu1 [198 kB]
352s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libegl1 armhf 1.7.0-1build1 [29.8 kB]
352s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libgles2 armhf 1.7.0-1build1 [18.0 kB]
352s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5network5t64 armhf 5.15.15+dfsg-4ubuntu1 [653 kB]
353s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB]
353s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-icccm4 armhf 0.4.2-1 [9840 B]
353s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-util1 armhf 0.4.1-1 [9468 B]
353s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-image0 armhf 0.4.0-2build1 [9680 B]
353s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-keysyms1 armhf 0.4.1-1 [8076 B]
353s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB]
353s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render-util0 armhf 0.3.10-1 [9444 B]
353s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shape0 armhf 1.17.0-2 [6030 B]
353s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xinerama0 armhf 1.17.0-2 [5212 B]
353s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xinput0 armhf 1.17.0-2 [29.5 kB]
353s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xkb1 armhf 1.17.0-2 [28.8 kB]
353s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libxkbcommon-x11-0 armhf 1.7.0-2 [13.6 kB]
353s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB]
353s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5gui5t64 armhf 5.15.15+dfsg-4ubuntu1 [2968 kB]
356s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5widgets5t64 armhf 5.15.15+dfsg-4ubuntu1 [2261 kB]
359s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5xml5t64 armhf 5.15.15+dfsg-4ubuntu1 [108 kB]
359s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5designer5 armhf 5.15.15-6build1 [2726 kB]
362s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5sql5t64 armhf 5.15.15+dfsg-4ubuntu1 [108 kB]
362s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5help5 armhf 5.15.15-6build1 [144 kB]
363s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5opengl5t64 armhf 5.15.15+dfsg-4ubuntu1 [126 kB]
363s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5printsupport5t64 armhf 5.15.15+dfsg-4ubuntu1 [192 kB]
363s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5test5t64 armhf 5.15.15+dfsg-4ubuntu1 [136 kB]
363s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf python3-legacy-cgi all 2.6.2-1 [16.6 kB]
363s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB]
363s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf libglu1-mesa armhf 9.0.2-1.1build1 [153 kB]
363s Get:90 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-opengl all 3.1.7+dfsg-1 [612 kB]
364s Get:91 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5.sip armhf 12.17.0-1build1 [55.1 kB]
364s Get:92 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5 armhf 5.15.11+dfsg-2 [2199 kB]
367s Get:93 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5.qtopengl armhf 5.15.11+dfsg-2 [47.4 kB]
367s Get:94 http://ftpmaster.internal/ubuntu plucky/universe armhf pymol-data all 3.0.0+dfsg-3build2 [1394 kB]
368s Get:95 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pymol armhf 3.0.0+dfsg-3build2 [3762 kB]
373s Get:96 http://ftpmaster.internal/ubuntu plucky/universe armhf pymol all 3.0.0+dfsg-3build2 [126 kB]
373s Fetched 71.2 MB in 2min 6s (566 kB/s)
373s Selecting previously unselected package python3-numpy-dev:armhf.
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374s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_armhf.deb ...
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374s Selecting previously unselected package libblas3:armhf.
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374s Selecting previously unselected package libgfortran5:armhf.
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374s Selecting previously unselected package python3-numpy.
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377s Selecting previously unselected package libice6:armhf.
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378s Selecting previously unselected package libwacom9:armhf.
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378s Selecting previously unselected package libpcre2-16-0:armhf.
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378s Selecting previously unselected package libpython3.13:armhf.
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378s Selecting previously unselected package libqt5core5t64:armhf.
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378s Selecting previously unselected package libqt5dbus5t64:armhf.
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378s Selecting previously unselected package libegl1:armhf.
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378s Selecting previously unselected package libgles2:armhf.
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378s Selecting previously unselected package libqt5network5t64:armhf.
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378s Selecting previously unselected package libsm6:armhf.
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380s Selecting previously unselected package libqt5printsupport5t64:armhf.
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380s Selecting previously unselected package libqt5test5t64:armhf.
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380s Unpacking libqt5test5t64:armhf (5.15.15+dfsg-4ubuntu1) ...
380s Selecting previously unselected package python3-legacy-cgi.
380s Preparing to unpack .../86-python3-legacy-cgi_2.6.2-1_all.deb ...
380s Unpacking python3-legacy-cgi (2.6.2-1) ...
380s Selecting previously unselected package libopengl0:armhf.
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380s Unpacking libopengl0:armhf (1.7.0-1build1) ...
380s Selecting previously unselected package libglu1-mesa:armhf.
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380s Selecting previously unselected package python3-opengl.
380s Preparing to unpack .../89-python3-opengl_3.1.7+dfsg-1_all.deb ...
380s Unpacking python3-opengl (3.1.7+dfsg-1) ...
380s Selecting previously unselected package python3-pyqt5.sip.
380s Preparing to unpack .../90-python3-pyqt5.sip_12.17.0-1build1_armhf.deb ...
380s Unpacking python3-pyqt5.sip (12.17.0-1build1) ...
380s Selecting previously unselected package python3-pyqt5.
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380s Unpacking python3-pyqt5 (5.15.11+dfsg-2) ...
380s Selecting previously unselected package python3-pyqt5.qtopengl.
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380s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-2) ...
381s Selecting previously unselected package pymol-data.
381s Preparing to unpack .../93-pymol-data_3.0.0+dfsg-3build2_all.deb ...
381s Unpacking pymol-data (3.0.0+dfsg-3build2) ...
381s Selecting previously unselected package python3-pymol.
381s Preparing to unpack .../94-python3-pymol_3.0.0+dfsg-3build2_armhf.deb ...
381s Unpacking python3-pymol (3.0.0+dfsg-3build2) ...
381s Selecting previously unselected package pymol.
381s Preparing to unpack .../95-pymol_3.0.0+dfsg-3build2_all.deb ...
381s Unpacking pymol (3.0.0+dfsg-3build2) ...
381s Setting up libpython3.13:armhf (3.13.2-2) ...
381s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ...
381s Setting up libxcb-dri3-0:armhf (1.17.0-2) ...
381s Setting up libllvm19:armhf (1:19.1.7-1ubuntu2) ...
381s Setting up libwayland-server0:armhf (1.23.1-3) ...
381s Setting up libx11-xcb1:armhf (2:1.8.10-2) ...
381s Setting up libdouble-conversion3:armhf (3.3.1-1) ...
381s Setting up libxcb-xfixes0:armhf (1.17.0-2) ...
381s Setting up libxcb-xinput0:armhf (1.17.0-2) ...
381s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ...
381s Setting up libxcb-render0:armhf (1.17.0-2) ...
381s Setting up libglvnd0:armhf (1.7.0-1build1) ...
381s Setting up libxcb-glx0:armhf (1.17.0-2) ...
381s Setting up libxcb-keysyms1:armhf (0.4.1-1) ...
381s Setting up libxcb-shape0:armhf (1.17.0-2) ...
381s Setting up x11-common (1:7.7+23ubuntu3) ...
381s Setting up libxcb-render-util0:armhf (0.3.10-1) ...
381s Setting up libxcb-shm0:armhf (1.17.0-2) ...
381s Setting up libxcb-icccm4:armhf (0.4.2-1) ...
381s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ...
381s Setting up libpcre2-16-0:armhf (10.45-1) ...
381s Setting up libaec0:armhf (1.1.3-1) ...
381s Setting up libopengl0:armhf (1.7.0-1build1) ...
381s Setting up libxcb-util1:armhf (0.4.1-1) ...
381s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ...
381s Setting up libxcb-xkb1:armhf (1.17.0-2) ...
381s Setting up libxcb-image0:armhf (0.4.0-2build1) ...
381s Setting up libxcb-present0:armhf (1.17.0-2) ...
381s Setting up libqt5core5t64:armhf (5.15.15+dfsg-4ubuntu1) ...
381s Setting up libblas3:armhf (3.12.1-2) ...
381s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
381s Setting up libxcb-xinerama0:armhf (1.17.0-2) ...
381s Setting up libgles2:armhf (1.7.0-1build1) ...
381s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ...
381s Setting up libxcb-sync1:armhf (1.17.0-2) ...
381s Setting up libavahi-common-data:armhf (0.8-16ubuntu1) ...
381s Setting up pymol-data (3.0.0+dfsg-3build2) ...
381s Setting up libxkbcommon-x11-0:armhf (1.7.0-2) ...
381s Setting up fonts-dejavu-mono (2.37-8) ...
381s Setting up python3-numpy-dev:armhf (1:2.2.3+ds-5) ...
381s Setting up fonts-dejavu-core (2.37-8) ...
381s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ...
381s Setting up libgfortran5:armhf (15-20250222-0ubuntu1) ...
381s Setting up libvulkan1:armhf (1.4.304.0-1) ...
381s Setting up python3-legacy-cgi (2.6.2-1) ...
382s Setting up python3-pyqt5.sip (12.17.0-1build1) ...
382s Setting up libmtdev1t64:armhf (1.1.7-1) ...
382s Setting up libxshmfence1:armhf (1.3-1build5) ...
382s Setting up libxcb-randr0:armhf (1.17.0-2) ...
382s Setting up libqt5sql5t64:armhf (5.15.15+dfsg-4ubuntu1) ...
382s Setting up libmd4c0:armhf (0.5.2-2) ...
382s Setting up libharfbuzz0b:armhf (10.2.0-1) ...
382s Setting up libglu1-mesa:armhf (9.0.2-1.1build1) ...
382s Setting up libsz2:armhf (1.1.3-1) ...
382s Setting up libwacom-common (2.14.0-1) ...
382s Setting up libwayland-client0:armhf (1.23.1-3) ...
382s Setting up libjpeg8:armhf (8c-2ubuntu11) ...
382s Setting up libice6:armhf (2:1.1.1-1) ...
382s Setting up mesa-libgallium:armhf (25.0.1-2ubuntu1) ...
382s Setting up liblapack3:armhf (3.12.1-2) ...
382s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
382s Setting up libqt5dbus5t64:armhf (5.15.15+dfsg-4ubuntu1) ...
382s Setting up libgbm1:armhf (25.0.1-2ubuntu1) ...
382s Setting up libwacom9:armhf (2.14.0-1) ...
382s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
382s Setting up libgl1-mesa-dri:armhf (25.0.1-2ubuntu1) ...
382s Setting up libqt5network5t64:armhf (5.15.15+dfsg-4ubuntu1) ...
382s Setting up libavahi-common3:armhf (0.8-16ubuntu1) ...
382s Setting up libqt5xml5t64:armhf (5.15.15+dfsg-4ubuntu1) ...
382s Setting up libqt5test5t64:armhf (5.15.15+dfsg-4ubuntu1) ...
382s Setting up libinput-bin (1.27.1-1) ...
382s Setting up libegl-mesa0:armhf (25.0.1-2ubuntu1) ...
382s Setting up python3-numpy (1:2.2.3+ds-5) ...
385s Setting up libhdf5-310:armhf (1.14.5+repack-3) ...
385s Setting up libegl1:armhf (1.7.0-1build1) ...
385s Setting up libfontconfig1:armhf (2.15.0-2ubuntu1) ...
385s Setting up libsm6:armhf (2:1.2.4-1) ...
385s Setting up libavahi-client3:armhf (0.8-16ubuntu1) ...
385s Setting up libinput10:armhf (1.27.1-1) ...
385s Setting up libhdf5-hl-310:armhf (1.14.5+repack-3) ...
385s Setting up fontconfig (2.15.0-2ubuntu1) ...
387s Regenerating fonts cache... done.
387s Setting up libglx-mesa0:armhf (25.0.1-2ubuntu1) ...
387s Setting up libglx0:armhf (1.7.0-1build1) ...
387s Setting up libnetcdf22:armhf (1:4.9.3-1) ...
387s Setting up libqt5gui5t64:armhf (5.15.15+dfsg-4ubuntu1) ...
387s Setting up libgl1:armhf (1.7.0-1build1) ...
387s Setting up libglew2.2:armhf (2.2.0-4build1) ...
387s Setting up libcups2t64:armhf (2.4.11-0ubuntu2) ...
387s Setting up libqt5widgets5t64:armhf (5.15.15+dfsg-4ubuntu1) ...
387s Setting up python3-opengl (3.1.7+dfsg-1) ...
388s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:30: SyntaxWarning: invalid escape sequence '\ '
388s |\ |\
389s Setting up libqt5help5:armhf (5.15.15-6build1) ...
389s Setting up libqt5opengl5t64:armhf (5.15.15+dfsg-4ubuntu1) ...
389s Setting up libqt5printsupport5t64:armhf (5.15.15+dfsg-4ubuntu1) ...
389s Setting up libqt5designer5:armhf (5.15.15-6build1) ...
389s Setting up python3-pyqt5 (5.15.11+dfsg-2) ...
390s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ...
390s Setting up python3-pymol (3.0.0+dfsg-3build2) ...
390s Setting up pymol (3.0.0+dfsg-3build2) ...
390s Processing triggers for libc-bin (2.41-1ubuntu2) ...
390s Processing triggers for man-db (2.13.0-1) ...
391s Processing triggers for udev (257.3-1ubuntu3) ...
399s autopkgtest [15:40:58]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)"
399s autopkgtest [15:40:58]: test command1: [-----------------------
401s Search pymol scripts in /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples...
401s Processing new directory /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples
401s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/chempy/generate_amber.py'...
401s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/chempy/generate_mmff.py'...
402s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/area_diff.pml'...
402s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/build_peptide.py'...
403s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/contact.pml
403s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/dali.py
403s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/density.pml
403s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/groel_es.pml
403s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/multiclip_ray.pml
403s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/packing.pml
403s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/packsurf.pml
403s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/ref_frame.pml
403s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/ribosome.pml
403s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/scenes2movie.pml
403s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/seq_match_sele.pml'...
404s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/ss_xfer.pml
404s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/symsph.py'...
404s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/brick01.py'...
405s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo01.py'...
405s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo02.py'...
408s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo03.py'...
412s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo04.py'...
412s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo05.py'...
412s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo06.py'...
413s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo07.py'...
414s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo08.py'...
414s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo_3Dtext01.py'...
414s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo_axes.py'...
414s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo_label_hack.py'...
418s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo_plane.py'...
418s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/chempy_model01.py'...
418s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/chempy_model02.py'...
418s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/chempy_model03.py'...
422s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/click_ordered_list.py'...
422s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/count_molecules.py'...
422s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/extend_demo01.py'...
422s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/gl01.py'...
423s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/gl02.py'...
423s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/gl03.py'...
427s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/importing.py
427s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/link_demo.py'...
428s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/membrane.py'...
428s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/mutate01.pml'...
428s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/mutate02.py'...
429s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/my_ext_gui.py'...
430s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/particle01.py'...
430s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/particle02.py'...
430s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/pick_wiz.py'...
431s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/povray01.py
431s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/scenes_to_movie01.pml'...
431s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/sd_annotate.pml
431s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/sele_wiz.py'...
431s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/start_pymol.py
431s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/syncmol.py'...
431s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/tkwindow.py
431s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/webgui01.py'...
431s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/webgui02.py'...
432s /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
432s mo = re.search("molid\=([A-Z0-9]+)",self.path)
432s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/xmlrpc01.py
432s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/xmlrpc02.py'...
432s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/launching/launch_demo.py'...
432s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/launching/launch_viewer1.py'...
432s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/launching/launch_viewer2.py'...
433s Processing new directory /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/chempy
433s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/chempy/generate_amber.py'...
433s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/chempy/generate_mmff.py'...
433s Processing new directory /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook
433s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/area_diff.pml'...
434s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/build_peptide.py'...
434s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/contact.pml
434s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/dali.py
434s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/density.pml
434s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/groel_es.pml
434s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/multiclip_ray.pml
434s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/packing.pml
434s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/packsurf.pml
434s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/ref_frame.pml
434s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/ribosome.pml
434s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/scenes2movie.pml
434s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/seq_match_sele.pml'...
435s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/ss_xfer.pml
435s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/cookbook/symsph.py'...
436s Processing new directory /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel
436s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/brick01.py'...
436s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo01.py'...
436s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo02.py'...
439s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo03.py'...
443s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo04.py'...
443s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo05.py'...
443s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo06.py'...
444s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo07.py'...
444s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo08.py'...
445s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo_3Dtext01.py'...
445s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo_axes.py'...
445s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo_label_hack.py'...
448s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/cgo_plane.py'...
448s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/chempy_model01.py'...
449s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/chempy_model02.py'...
449s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/chempy_model03.py'...
452s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/click_ordered_list.py'...
452s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/count_molecules.py'...
453s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/extend_demo01.py'...
453s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/gl01.py'...
453s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/gl02.py'...
454s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/gl03.py'...
457s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/importing.py
457s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/link_demo.py'...
458s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/membrane.py'...
458s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/mutate01.pml'...
458s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/mutate02.py'...
460s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/my_ext_gui.py'...
460s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/particle01.py'...
461s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/particle02.py'...
461s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/pick_wiz.py'...
461s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/povray01.py
461s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/scenes_to_movie01.pml'...
462s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/sd_annotate.pml
462s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/sele_wiz.py'...
462s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/start_pymol.py
462s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/syncmol.py'...
462s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/tkwindow.py
462s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/webgui01.py'...
462s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/webgui02.py'...
462s /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
462s mo = re.search("molid\=([A-Z0-9]+)",self.path)
463s Skip /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/xmlrpc01.py
463s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/devel/xmlrpc02.py'...
463s Processing new directory /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/launching
463s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/launching/launch_demo.py'...
463s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/launching/launch_viewer1.py'...
463s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/examples/launching/launch_viewer2.py'...
464s autopkgtest [15:42:03]: test command1: -----------------------]
468s autopkgtest [15:42:07]: test command1: - - - - - - - - - - results - - - - - - - - - -
468s command1 PASS (superficial)
472s autopkgtest [15:42:11]: test command2: preparing testbed
476s Reading package lists...
476s Building dependency tree...
476s Reading state information...
476s Starting pkgProblemResolver with broken count: 0
477s Starting 2 pkgProblemResolver with broken count: 0
477s Done
477s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
487s autopkgtest [15:42:26]: test command2: sh debian/tests/call-pymol-scripts data/demo
487s autopkgtest [15:42:26]: test command2: [-----------------------
489s Search pymol scripts in /tmp/autopkgtest.OSnm2W/build.8Rp/src/data/demo...
489s Processing new directory /tmp/autopkgtest.OSnm2W/build.8Rp/src/data/demo
489s Run 'pymol -c /tmp/autopkgtest.OSnm2W/build.8Rp/src/data/demo/cgo03.py'...
492s autopkgtest [15:42:31]: test command2: -----------------------]
497s autopkgtest [15:42:36]: test command2: - - - - - - - - - - results - - - - - - - - - -
498s command2 PASS (superficial)
504s autopkgtest [15:42:43]: test command3: preparing testbed
507s Reading package lists...
507s Building dependency tree...
507s Reading state information...
507s Starting pkgProblemResolver with broken count: 0
507s Starting 2 pkgProblemResolver with broken count: 0
507s Done
508s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
516s autopkgtest [15:42:55]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)"
516s autopkgtest [15:42:55]: test command3: [-----------------------
518s Search pymol scripts in /usr/share/pymol/examples...
518s Processing new directory /usr/share/pymol/examples
518s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
518s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
518s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
518s Skip /usr/share/pymol/examples/cookbook/contact.pml
518s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
518s Skip /usr/share/pymol/examples/cookbook/packing.pml
518s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
518s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
518s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
518s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
518s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
518s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
519s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
519s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
522s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
525s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
525s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
526s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
527s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
527s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
527s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
527s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
528s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
531s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
531s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
531s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
531s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
535s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
535s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
535s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
535s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
536s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
537s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
541s Skip /usr/share/pymol/examples/devel/importing.py
541s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
541s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
542s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
542s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
544s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
544s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
544s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
545s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
545s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
545s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
545s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
545s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
545s Skip /usr/share/pymol/examples/devel/tkwindow.py
545s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
546s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
546s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
546s mo = re.search("molid\=([A-Z0-9]+)",self.path)
546s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
546s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
546s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
546s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
547s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
547s Processing new directory /usr/share/pymol/examples/chempy
547s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
547s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
547s Processing new directory /usr/share/pymol/examples/cookbook
547s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
547s Skip /usr/share/pymol/examples/cookbook/contact.pml
547s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
547s Skip /usr/share/pymol/examples/cookbook/packing.pml
547s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
547s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
547s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
547s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
547s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
547s Processing new directory /usr/share/pymol/examples/devel
547s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
548s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
548s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
551s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
554s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
554s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
555s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
556s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
556s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
556s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
556s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
556s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
560s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
560s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
560s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
560s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
564s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
564s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
564s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
564s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
565s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
565s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
569s Skip /usr/share/pymol/examples/devel/importing.py
569s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
569s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
569s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
570s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
572s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
572s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
572s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
573s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
573s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
573s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
573s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
573s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
573s Skip /usr/share/pymol/examples/devel/tkwindow.py
573s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
574s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
574s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
574s mo = re.search("molid\=([A-Z0-9]+)",self.path)
574s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
574s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
574s Processing new directory /usr/share/pymol/examples/launching
574s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
574s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
574s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
575s autopkgtest [15:43:54]: test command3: -----------------------]
579s autopkgtest [15:43:58]: test command3: - - - - - - - - - - results - - - - - - - - - -
579s command3 PASS (superficial)
583s autopkgtest [15:44:02]: test command4: preparing testbed
585s Reading package lists...
585s Building dependency tree...
585s Reading state information...
585s Starting pkgProblemResolver with broken count: 0
585s Starting 2 pkgProblemResolver with broken count: 0
585s Done
586s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
594s autopkgtest [15:44:13]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray
594s autopkgtest [15:44:13]: test command4: [-----------------------
596s Search pymol scripts in /usr/share/pymol/examples/cookbook...
596s Processing new directory /usr/share/pymol/examples/cookbook
596s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'...
596s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'...
597s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
597s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'...
599s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'...
615s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'...
617s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'...
617s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'...
618s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'...
619s autopkgtest [15:44:38]: test command4: -----------------------]
623s autopkgtest [15:44:42]: test command4: - - - - - - - - - - results - - - - - - - - - -
623s command4 PASS (superficial)
627s autopkgtest [15:44:46]: test command5: preparing testbed
629s Reading package lists...
629s Building dependency tree...
629s Reading state information...
629s Starting pkgProblemResolver with broken count: 0
630s Starting 2 pkgProblemResolver with broken count: 0
630s Done
630s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
638s autopkgtest [15:44:57]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml)
638s autopkgtest [15:44:57]: test command5: [-----------------------
640s PyMOL(TM) Molecular Graphics System, Version 3.0.0.
640s Copyright (c) Schrodinger, LLC.
640s All Rights Reserved.
640s
640s Created by Warren L. DeLano, Ph.D.
640s
640s PyMOL is user-supported open-source software. Although some versions
640s are freely available, PyMOL is not in the public domain.
640s
640s If PyMOL is helpful in your work or study, then please volunteer
640s support for our ongoing efforts to create open and affordable scientific
640s software by purchasing a PyMOL Maintenance and/or Support subscription.
640s
640s More information can be found at "http://www.pymol.org".
640s
640s Enter "help" for a list of commands.
640s Enter "help <command-name>" for information on a specific command.
640s
640s Hit ESC anytime to toggle between text and graphics.
640s
640s Setting: wizard_prompt_mode set to 3.
640s Detected 8 CPU cores. Enabled multithreaded rendering.
640s PyMOL>from pymol.wizard.annotation import load_annotated_sdf
640s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf)
640s PyMOL>wizard annotation
640s PyMOL>set wizard_prompt_mode,3
640s PyMOL>load_annotated_sdf demo.sdf
640s HBA ['[1, 25, 26, 34]\n']
640s HBD ['[20]\n']
640s ACD_NUMBER ['MFCD02681585\n']
640s SCORE ['-222.044\n']
640s MOLID ['MFCD02681585\n']
640s HBA ['[1, 21]\n']
640s HBD ['[]\n']
640s ACD_NUMBER ['MFCD01567969\n']
640s SCORE ['-219.984\n']
640s MOLID ['MFCD01567969\n']
640s HBA ['[1, 24]\n']
640s HBD ['[10, 22]\n']
640s ACD_NUMBER ['MFCD00023789\n']
640s SCORE ['-219.911\n']
640s MOLID ['MFCD00023789\n']
640s HBA ['[1, 11]\n']
640s HBD ['[3]\n']
640s ACD_NUMBER ['MFCD02579443\n']
640s SCORE ['-219.769\n']
640s MOLID ['MFCD02579443\n']
640s HBA ['[1, 11]\n']
640s HBD ['[9]\n']
640s ACD_NUMBER ['MFCD02579410\n']
640s SCORE ['-214.809\n']
640s MOLID ['MFCD02579410\n']
640s HBA ['[1, 20, 22, 27, 32]\n']
640s HBD ['[10, 20]\n']
640s ACD_NUMBER ['MFCD02579135\n']
640s SCORE ['-213.630\n']
640s MOLID ['MFCD02579135\n']
640s HBA ['[1, 11, 14, 21]\n']
640s HBD ['[]\n']
640s ACD_NUMBER ['MFCD02681468\n']
640s SCORE ['-213.462\n']
640s MOLID ['MFCD02681468\n']
640s HBA ['[1, 13, 14, 29]\n']
640s HBD ['[]\n']
640s ACD_NUMBER ['MFCD00141070\n']
640s SCORE ['-213.240\n']
640s MOLID ['MFCD00141070\n']
640s HBA ['[1, 8]\n']
640s HBD ['[]\n']
640s ACD_NUMBER ['MFCD02983625\n']
640s SCORE ['-211.422\n']
640s MOLID ['MFCD02983625\n']
640s HBA ['[1, 11]\n']
640s HBD ['[3, 12]\n']
640s ACD_NUMBER ['MFCD00115818\n']
640s SCORE ['-210.482\n']
640s MOLID ['MFCD00115818\n']
640s autopkgtest [15:44:59]: test command5: -----------------------]
644s autopkgtest [15:45:03]: test command5: - - - - - - - - - - results - - - - - - - - - -
644s command5 PASS (superficial)
648s autopkgtest [15:45:07]: @@@@@@@@@@@@@@@@@@@@ summary
648s command1 PASS (superficial)
648s command2 PASS (superficial)
648s command3 PASS (superficial)
648s command4 PASS (superficial)
648s command5 PASS (superficial)