0s autopkgtest [12:20:59]: starting date and time: 2025-01-09 12:20:59+0000 0s autopkgtest [12:20:59]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [12:20:59]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ncm58vqj/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:libpng1.6 --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libpng1.6/1.6.45-1 -- lxd -r lxd-armhf-10.145.243.184 lxd-armhf-10.145.243.184:autopkgtest/ubuntu/plucky/armhf 55s autopkgtest [12:21:54]: testbed dpkg architecture: armhf 57s autopkgtest [12:21:56]: testbed apt version: 2.9.14ubuntu1 62s autopkgtest [12:22:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s autopkgtest [12:22:04]: testbed release detected to be: None 74s autopkgtest [12:22:13]: updating testbed package index (apt update) 77s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 77s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [213 kB] 77s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 77s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 77s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 77s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [769 kB] 77s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.6 kB] 77s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [126 kB] 77s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [206 kB] 77s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [756 B] 77s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [871 kB] 77s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [5184 B] 77s Get:13 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [296 kB] 77s Get:14 http://ftpmaster.internal/ubuntu plucky/restricted Sources [15.2 kB] 77s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1387 kB] 77s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [20.8 MB] 78s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1357 kB] 78s Get:18 http://ftpmaster.internal/ubuntu plucky/restricted armhf Packages [2544 B] 78s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [14.6 MB] 79s Get:20 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [173 kB] 82s Fetched 41.0 MB in 6s (7279 kB/s) 84s Reading package lists... 90s autopkgtest [12:22:29]: upgrading testbed (apt dist-upgrade and autopurge) 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 94s Done 95s Entering ResolveByKeep 95s 96s The following package was automatically installed and is no longer required: 96s libassuan0 96s Use 'apt autoremove' to remove it. 96s The following NEW packages will be installed: 96s openssl-provider-legacy python3-bcrypt 96s The following packages will be upgraded: 96s apport apport-core-dump-handler appstream apt apt-utils base-passwd bash 96s bash-completion binutils binutils-arm-linux-gnueabihf binutils-common 96s bsdextrautils bsdutils curl dirmngr dracut-install eject ethtool fdisk fwupd 96s gcc-14-base gettext-base gir1.2-girepository-2.0 gir1.2-glib-2.0 gnupg 96s gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv 96s groff-base iputils-ping iputils-tracepath keyboxd libappstream5 96s libapt-pkg6.0t64 libatomic1 libbinutils libblkid1 libbpf1 libc-bin libc6 96s libcap-ng0 libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64 96s libdebconfclient0 libfdisk1 libfribidi0 libftdi1-2 libfwupd3 libgcc-s1 96s libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-bin libglib2.0-data 96s libgpg-error-l10n libgpg-error0 libgpgme11t64 libgstreamer1.0-0 96s libjson-glib-1.0-0 libjson-glib-1.0-common libmount1 libnewt0.52 libnpth0t64 96s libnss-systemd libnss3 libpam-systemd libpng16-16t64 libpython3-stdlib 96s libpython3.12-minimal libpython3.12-stdlib libqmi-glib5 libqmi-proxy 96s libreadline8t64 libsframe1 libsmartcols1 libssl3t64 libstdc++6 96s libsystemd-shared libsystemd0 libtraceevent1 libtraceevent1-plugin libudev1 96s libunistring5 libuuid1 libwrap0 libxkbcommon0 libxml2 libyaml-0-2 locales 96s make mount nano openssl pci.ids publicsuffix python-apt-common python3 96s python3-apport python3-apt python3-attr python3-cryptography python3-gdbm 96s python3-jinja2 python3-json-pointer python3-jsonpatch python3-minimal 96s python3-newt python3-oauthlib python3-openssl python3-pkg-resources 96s python3-problem-report python3-rich python3-setuptools 96s python3-software-properties python3-wadllib python3.12 python3.12-gdbm 96s python3.12-minimal python3.13-gdbm readline-common rsync 96s software-properties-common systemd systemd-cryptsetup systemd-resolved 96s systemd-sysv systemd-timesyncd tar tzdata ucf udev usb.ids util-linux 96s uuid-runtime whiptail xauth 96s 142 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 96s Need to get 58.8 MB of archives. 96s After this operation, 8980 kB of additional disk space will be used. 96s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf bash armhf 5.2.37-1ubuntu1 [677 kB] 97s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf bsdutils armhf 1:2.40.2-1ubuntu2 [108 kB] 97s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf tar armhf 1.35+dfsg-3.1 [240 kB] 97s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-12ubuntu1 [7892 B] 97s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-12ubuntu1 [52.6 kB] 97s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-12ubuntu1 [40.6 kB] 97s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-12ubuntu1 [711 kB] 97s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libc6 armhf 2.40-4ubuntu1 [2866 kB] 97s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf openssl-provider-legacy armhf 3.4.0-1ubuntu2 [29.4 kB] 97s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libssl3t64 armhf 3.4.0-1ubuntu2 [1756 kB] 97s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 257-2ubuntu1 [41.2 kB] 97s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 257-2ubuntu1 [307 kB] 97s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 257-2ubuntu1 [122 kB] 97s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf eject armhf 2.40.2-1ubuntu2 [62.3 kB] 97s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf bsdextrautils armhf 2.40.2-1ubuntu2 [99.4 kB] 97s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf fdisk armhf 2.40.2-1ubuntu2 [155 kB] 97s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libblkid1 armhf 2.40.2-1ubuntu2 [167 kB] 97s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libmount1 armhf 2.40.2-1ubuntu2 [189 kB] 97s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libsmartcols1 armhf 2.40.2-1ubuntu2 [135 kB] 97s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libuuid1 armhf 2.40.2-1ubuntu2 [39.5 kB] 97s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf util-linux armhf 2.40.2-1ubuntu2 [1195 kB] 97s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf uuid-runtime armhf 2.40.2-1ubuntu2 [62.7 kB] 97s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libfdisk1 armhf 2.40.2-1ubuntu2 [211 kB] 97s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf mount armhf 2.40.2-1ubuntu2 [156 kB] 97s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf readline-common all 8.2-6 [56.5 kB] 97s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libreadline8t64 armhf 8.2-6 [131 kB] 97s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 257-2ubuntu1 [160 kB] 97s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 257-2ubuntu1 [3489 kB] 97s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 257-2ubuntu1 [1974 kB] 97s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 257-2ubuntu1 [11.8 kB] 97s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 257-2ubuntu1 [233 kB] 97s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 257-2ubuntu1 [2156 kB] 98s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 257-2ubuntu1 [190 kB] 98s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 257-2ubuntu1 [483 kB] 98s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libdebconfclient0 armhf 0.274ubuntu1 [11.2 kB] 98s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.6 [53.4 kB] 98s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libc-bin armhf 2.40-4ubuntu1 [542 kB] 98s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libapt-pkg6.0t64 armhf 2.9.18 [1085 kB] 98s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf apt armhf 2.9.18 [1349 kB] 98s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf apt-utils armhf 2.9.18 [216 kB] 98s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libgpg-error-l10n all 1.51-3 [8800 B] 98s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libgpg-error0 armhf 1.51-3 [64.8 kB] 98s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libnpth0t64 armhf 1.8-2 [7572 B] 98s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf gpg-wks-client armhf 2.4.4-2ubuntu21 [88.9 kB] 98s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf dirmngr armhf 2.4.4-2ubuntu21 [351 kB] 98s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf gpgsm armhf 2.4.4-2ubuntu21 [246 kB] 98s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf gnupg-utils armhf 2.4.4-2ubuntu21 [160 kB] 98s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf gpg-agent armhf 2.4.4-2ubuntu21 [238 kB] 98s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf gpg armhf 2.4.4-2ubuntu21 [536 kB] 98s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf gpgconf armhf 2.4.4-2ubuntu21 [118 kB] 98s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf gnupg all 2.4.4-2ubuntu21 [359 kB] 98s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf keyboxd armhf 2.4.4-2ubuntu21 [113 kB] 98s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf gpgv armhf 2.4.4-2ubuntu21 [228 kB] 98s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf python3-minimal armhf 3.12.8-1 [27.5 kB] 98s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf python3 armhf 3.12.8-1 [23.9 kB] 98s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-4ubuntu1 [196 kB] 98s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.8-3 [667 kB] 98s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.8-3 [1939 kB] 98s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.8-3 [2029 kB] 98s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.8-3 [825 kB] 98s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3-stdlib armhf 3.12.8-1 [10.1 kB] 98s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf rsync armhf 3.3.0+ds1-2 [422 kB] 98s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf python-apt-common all 2.9.6build1 [21.0 kB] 98s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apt armhf 2.9.6build1 [174 kB] 98s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.31.0-0ubuntu2 [25.3 kB] 98s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.31.0-0ubuntu2 [93.1 kB] 98s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libglib2.0-data all 2.82.4-1 [52.2 kB] 98s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf libglib2.0-bin armhf 2.82.4-1 [93.0 kB] 98s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf gir1.2-girepository-2.0 armhf 1.82.0-3 [25.3 kB] 98s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf gir1.2-glib-2.0 armhf 2.82.4-1 [182 kB] 98s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libglib2.0-0t64 armhf 2.82.4-1 [1421 kB] 98s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libgirepository-1.0-1 armhf 1.82.0-3 [108 kB] 98s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.31.0-0ubuntu2 [18.2 kB] 98s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.31.0-0ubuntu2 [82.9 kB] 98s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libcap-ng0 armhf 0.8.5-4 [13.8 kB] 98s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libunistring5 armhf 1.3-1 [583 kB] 98s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf iputils-ping armhf 3:20240905-1ubuntu1 [45.0 kB] 98s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-2 [158 kB] 98s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libfribidi0 armhf 1.0.16-1 [24.3 kB] 98s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-4ubuntu1 [20.1 kB] 98s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-4ubuntu1 [39.7 kB] 98s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2build1 [599 kB] 98s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libyaml-0-2 armhf 0.2.5-2 [45.3 kB] 98s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf locales all 2.40-4ubuntu1 [4224 kB] 99s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf openssl armhf 3.4.0-1ubuntu2 [1159 kB] 99s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf python3-rich all 13.9.4-1 [190 kB] 99s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf ucf all 3.0046 [41.9 kB] 99s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-4ubuntu1 [17.3 kB] 99s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.16.0-1 [214 kB] 99s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf ethtool armhf 1:6.11-1 [222 kB] 99s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf gettext-base armhf 0.22.5-3 [40.7 kB] 99s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf groff-base armhf 1.23.0-7 [949 kB] 99s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf iputils-tracepath armhf 3:20240905-1ubuntu1 [13.3 kB] 99s Get:94 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpng16-16t64 armhf 1.6.45-1 [168 kB] 99s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.4-2 [19.0 kB] 99s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.4-2 [53.8 kB] 99s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf libxkbcommon0 armhf 1.7.0-2 [113 kB] 99s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.3-1 [277 kB] 99s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.11.25-1 [282 kB] 99s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf publicsuffix all 20241206.1516-0.1 [135 kB] 99s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.1-2 [29.8 kB] 99s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.8-3 [28.9 kB] 99s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gdbm armhf 3.13.1-1 [8668 B] 99s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf usb.ids all 2024.12.04-1 [223 kB] 99s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf xauth armhf 1:1.1.2-1.1 [23.0 kB] 99s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libcurl3t64-gnutls armhf 8.11.1-1ubuntu1 [333 kB] 99s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf libappstream5 armhf 1.0.4-1 [211 kB] 99s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf appstream armhf 1.0.4-1 [67.3 kB] 99s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libctf0 armhf 2.43.50.20241230-1ubuntu1 [74.5 kB] 99s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libctf-nobfd0 armhf 2.43.50.20241230-1ubuntu1 [77.3 kB] 99s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf binutils-arm-linux-gnueabihf armhf 2.43.50.20241230-1ubuntu1 [2960 kB] 100s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libbinutils armhf 2.43.50.20241230-1ubuntu1 [403 kB] 100s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf binutils armhf 2.43.50.20241230-1ubuntu1 [3086 B] 100s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf binutils-common armhf 2.43.50.20241230-1ubuntu1 [222 kB] 100s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libsframe1 armhf 2.43.50.20241230-1ubuntu1 [12.1 kB] 100s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf curl armhf 8.11.1-1ubuntu1 [244 kB] 100s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libcurl4t64 armhf 8.11.1-1ubuntu1 [337 kB] 100s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf dracut-install armhf 105-2ubuntu5 [37.3 kB] 100s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.6+ds-1 [5636 B] 100s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.6+ds-1 [59.5 kB] 100s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 2.0.3-3 [5028 kB] 100s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd3 armhf 2.0.3-3 [121 kB] 100s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libqmi-proxy armhf 1.35.6-1 [5878 B] 100s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf libqmi-glib5 armhf 1.35.6-1 [928 kB] 100s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf gnupg-l10n all 2.4.4-2ubuntu21 [66.3 kB] 100s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-8 [26.3 kB] 100s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.24.1-2ubuntu1 [126 kB] 100s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf libgstreamer1.0-0 armhf 1.24.10-2 [1109 kB] 100s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf libnss3 armhf 2:3.106-1ubuntu1 [1321 kB] 100s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf libwrap0 armhf 7.6.q-34 [45.7 kB] 100s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf make armhf 4.4.1-1 [180 kB] 100s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-attr all 24.2.0-1 [50.2 kB] 100s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-bcrypt armhf 4.2.0-2.1 [239 kB] 100s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cryptography armhf 43.0.0-1 [925 kB] 100s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.3-1.1 [108 kB] 100s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-3 [8444 B] 100s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-5 [12.3 kB] 100s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-3 [89.9 kB] 100s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-openssl all 24.3.0-1 [45.8 kB] 100s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pkg-resources all 75.6.0-1 [144 kB] 100s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf python3-setuptools all 75.6.0-1 [645 kB] 100s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf software-properties-common all 0.108 [16.5 kB] 100s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf python3-software-properties all 0.108 [30.9 kB] 100s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-2 [36.2 kB] 101s Preconfiguring packages ... 101s Fetched 58.8 MB in 4s (13.5 MB/s) 102s (Reading database ... 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Unpacking software-properties-common (0.108) over (0.105) ... 120s Preparing to unpack .../66-python3-software-properties_0.108_all.deb ... 120s Unpacking python3-software-properties (0.108) over (0.105) ... 120s Preparing to unpack .../67-python3-wadllib_2.0.0-2_all.deb ... 120s Unpacking python3-wadllib (2.0.0-2) over (2.0.0-1) ... 120s Setting up systemd-sysv (257-2ubuntu1) ... 120s Setting up pci.ids (0.0~2024.11.25-1) ... 120s Setting up libnewt0.52:armhf (0.52.24-4ubuntu1) ... 120s Setting up apt-utils (2.9.18) ... 120s Setting up bsdextrautils (2.40.2-1ubuntu2) ... 120s Setting up libcurl4t64:armhf (8.11.1-1ubuntu1) ... 120s Setting up libyaml-0-2:armhf (0.2.5-2) ... 120s Setting up python3.12-gdbm (3.12.8-3) ... 120s Setting up libpython3.12-minimal:armhf (3.12.8-3) ... 120s Setting up binutils-common:armhf (2.43.50.20241230-1ubuntu1) ... 120s Setting up libcurl3t64-gnutls:armhf (8.11.1-1ubuntu1) ... 120s Setting up libctf-nobfd0:armhf (2.43.50.20241230-1ubuntu1) ... 120s Setting up gettext-base (0.22.5-3) ... 120s Setting up libnss-systemd:armhf (257-2ubuntu1) ... 120s Setting up libnss3:armhf (2:3.106-1ubuntu1) ... 120s Setting up locales (2.40-4ubuntu1) ... 121s Generating locales (this might take a while)... 123s en_US.UTF-8... done 123s Generation complete. 123s Setting up libsframe1:armhf (2.43.50.20241230-1ubuntu1) ... 123s Setting up tzdata (2024b-4ubuntu1) ... 124s 124s Current default time zone: 'Etc/UTC' 124s Local time is now: Thu Jan 9 12:23:03 UTC 2025. 124s Universal Time is now: Thu Jan 9 12:23:03 UTC 2025. 124s Run 'dpkg-reconfigure tzdata' if you wish to change it. 124s 124s Setting up eject (2.40.2-1ubuntu2) ... 124s Setting up libftdi1-2:armhf (1.5-8) ... 124s Setting up libglib2.0-data (2.82.4-1) ... 124s Setting up systemd-cryptsetup (257-2ubuntu1) ... 124s Setting up libwrap0:armhf (7.6.q-34) ... 124s Setting up make (4.4.1-1) ... 124s Setting up gnupg-l10n (2.4.4-2ubuntu21) ... 124s Setting up bash-completion (1:2.16.0-1) ... 124s Setting up libfribidi0:armhf (1.0.16-1) ... 124s Setting up libpng16-16t64:armhf (1.6.45-1) ... 124s Setting up systemd-timesyncd (257-2ubuntu1) ... 124s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 124s Setting up libatomic1:armhf (14.2.0-12ubuntu1) ... 124s Setting up udev (257-2ubuntu1) ... 126s Setting up usb.ids (2024.12.04-1) ... 126s Setting up ucf (3.0046) ... 126s Installing new version of config file /etc/ucf.conf ... 126s Setting up libfdisk1:armhf (2.40.2-1ubuntu2) ... 126s Setting up nano (8.3-1) ... 126s Installing new version of config file /etc/nanorc ... 126s Setting up whiptail (0.52.24-4ubuntu1) ... 126s Setting up python-apt-common (2.9.6build1) ... 126s Setting up dracut-install (105-2ubuntu5) ... 126s Setting up uuid-runtime (2.40.2-1ubuntu2) ... 127s uuidd.service is a disabled or a static unit not running, not starting it. 127s Setting up xauth (1:1.1.2-1.1) ... 127s Setting up groff-base (1.23.0-7) ... 127s Setting up libtraceevent1:armhf (1:1.8.4-2) ... 127s Setting up libpam-systemd:armhf (257-2ubuntu1) ... 127s Setting up libjson-glib-1.0-common (1.10.6+ds-1) ... 127s Setting up curl (8.11.1-1ubuntu1) ... 127s Setting up libbinutils:armhf (2.43.50.20241230-1ubuntu1) ... 127s Setting up openssl (3.4.0-1ubuntu2) ... 127s Installing new version of config file /etc/ssl/openssl.cnf ... 127s Setting up libgpg-error-l10n (1.51-3) ... 127s Setting up iputils-ping (3:20240905-1ubuntu1) ... 127s Setting up readline-common (8.2-6) ... 127s Setting up publicsuffix (20241206.1516-0.1) ... 127s Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2build1) ... 127s Setting up libbpf1:armhf (1:1.5.0-2) ... 127s Setting up iputils-tracepath (3:20240905-1ubuntu1) ... 127s Setting up rsync (3.3.0+ds1-2) ... 128s rsync.service is a disabled or a static unit not running, not starting it. 128s Setting up python3.13-gdbm (3.13.1-2) ... 128s Setting up ethtool (1:6.11-1) ... 128s Setting up gnupg-utils (2.4.4-2ubuntu21) ... 128s Setting up systemd-resolved (257-2ubuntu1) ... 128s Setting up libxkbcommon0:armhf (1.7.0-2) ... 128s Setting up libctf0:armhf (2.43.50.20241230-1ubuntu1) ... 128s Setting up python3.12-minimal (3.12.8-3) ... 129s Setting up libglib2.0-0t64:armhf (2.82.4-1) ... 129s No schema files found: doing nothing. 129s Setting up gir1.2-glib-2.0:armhf (2.82.4-1) ... 129s Setting up libreadline8t64:armhf (8.2-6) ... 129s Setting up libtraceevent1-plugin:armhf (1:1.8.4-2) ... 129s Setting up gpgconf (2.4.4-2ubuntu21) ... 129s Setting up libgirepository-1.0-1:armhf (1.82.0-3) ... 129s Setting up binutils-arm-linux-gnueabihf (2.43.50.20241230-1ubuntu1) ... 129s Setting up gpg (2.4.4-2ubuntu21) ... 130s Setting up libgstreamer1.0-0:armhf (1.24.10-2) ... 130s Setcap worked! gst-ptp-helper is not suid! 130s Setting up gpg-agent (2.4.4-2ubuntu21) ... 130s Setting up libpython3.12-stdlib:armhf (3.12.8-3) ... 130s Setting up python3.12 (3.12.8-3) ... 132s Setting up gpgsm (2.4.4-2ubuntu21) ... 132s Setting up libglib2.0-bin (2.82.4-1) ... 132s Setting up libappstream5:armhf (1.0.4-1) ... 132s Setting up libqmi-glib5:armhf (1.35.6-1) ... 132s Setting up binutils (2.43.50.20241230-1ubuntu1) ... 132s Setting up fdisk (2.40.2-1ubuntu2) ... 132s Setting up libjson-glib-1.0-0:armhf (1.10.6+ds-1) ... 132s Setting up dirmngr (2.4.4-2ubuntu21) ... 132s Setting up appstream (1.0.4-1) ... 132s ✔ Metadata cache was updated successfully. 132s Setting up gir1.2-girepository-2.0:armhf (1.82.0-3) ... 132s Setting up keyboxd (2.4.4-2ubuntu21) ... 133s Setting up gnupg (2.4.4-2ubuntu21) ... 133s Setting up libgpgme11t64:armhf (1.24.1-2ubuntu1) ... 133s Setting up libpython3-stdlib:armhf (3.12.8-1) ... 133s Setting up gpg-wks-client (2.4.4-2ubuntu21) ... 133s Setting up libqmi-proxy (1.35.6-1) ... 133s Setting up libfwupd3:armhf (2.0.3-3) ... 133s Setting up python3 (3.12.8-1) ... 133s Setting up python3-newt:armhf (0.52.24-4ubuntu1) ... 133s Setting up python3-jinja2 (3.1.3-1.1) ... 133s Setting up python3-wadllib (2.0.0-2) ... 134s Setting up python3-json-pointer (2.4-3) ... 134s Setting up fwupd (2.0.3-3) ... 134s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 134s fwupd.service is a disabled or a static unit not running, not starting it. 134s Setting up python3-pkg-resources (75.6.0-1) ... 135s Setting up python3-attr (24.2.0-1) ... 135s Setting up python3-setuptools (75.6.0-1) ... 136s Setting up python3-rich (13.9.4-1) ... 136s Setting up python3-gdbm:armhf (3.13.1-1) ... 136s Setting up python3-problem-report (2.31.0-0ubuntu2) ... 136s Setting up python3-apt (2.9.6build1) ... 137s Setting up python3-jsonpatch (1.32-5) ... 137s Setting up python3-bcrypt (4.2.0-2.1) ... 137s Setting up python3-apport (2.31.0-0ubuntu2) ... 137s Setting up python3-software-properties (0.108) ... 137s Setting up python3-cryptography (43.0.0-1) ... 138s Setting up python3-openssl (24.3.0-1) ... 138s Setting up software-properties-common (0.108) ... 138s Setting up python3-oauthlib (3.2.2-3) ... 138s Setting up apport-core-dump-handler (2.31.0-0ubuntu2) ... 139s Setting up apport (2.31.0-0ubuntu2) ... 140s apport-autoreport.service is a disabled or a static unit not running, not starting it. 140s Processing triggers for dbus (1.14.10-4ubuntu5) ... 140s Processing triggers for shared-mime-info (2.4-5) ... 140s Warning: program compiled against libxml 212 using older 209 140s Processing triggers for debianutils (5.21) ... 141s Processing triggers for install-info (7.1.1-1) ... 141s Processing triggers for initramfs-tools (0.142ubuntu35) ... 141s Processing triggers for libc-bin (2.40-4ubuntu1) ... 141s Processing triggers for systemd (257-2ubuntu1) ... 141s Processing triggers for man-db (2.13.0-1) ... 146s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Starting pkgProblemResolver with broken count: 0 147s Starting 2 pkgProblemResolver with broken count: 0 147s Done 148s The following packages will be REMOVED: 148s libassuan0* 149s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded. 149s After this operation, 68.6 kB disk space will be freed. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 60003 files and directories currently installed.) 149s Removing libassuan0:armhf (2.5.6-1build1) ... 149s Processing triggers for libc-bin (2.40-4ubuntu1) ... 152s autopkgtest [12:23:31]: rebooting testbed after setup commands that affected boot 206s autopkgtest [12:24:25]: testbed running kernel: Linux 6.8.0-49-generic #49~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov 6 18:12:14 UTC 2 240s autopkgtest [12:24:59]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 264s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (dsc) [2304 B] 264s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (tar) [22.0 MB] 264s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (diff) [57.7 kB] 264s gpgv: Signature made Thu Nov 14 18:31:58 2024 UTC 264s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 264s gpgv: Can't check signature: No public key 264s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1build1.dsc: no acceptable signature found 265s autopkgtest [12:25:24]: testing package pymol version 3.0.0+dfsg-1build1 268s autopkgtest [12:25:27]: build not needed 286s autopkgtest [12:25:45]: test command1: preparing testbed 288s Reading package lists... 288s Building dependency tree... 288s Reading state information... 289s Starting pkgProblemResolver with broken count: 0 289s Starting 2 pkgProblemResolver with broken count: 0 289s Done 290s The following NEW packages will be installed: 290s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 290s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 290s libdouble-conversion3 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 290s libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa 290s libgles2 libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 290s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libice6 290s libinput-bin libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libllvm19 290s libmd4c0 libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0 290s libpython3.12t64 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 290s libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 290s libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 290s libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 290s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 290s libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 290s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 290s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 290s libxfixes3 libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 290s mesa-libgallium pymol pymol-data python3-numpy python3-opengl python3-pymol 290s python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 290s 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. 290s Need to get 71.1 MB of archives. 290s After this operation, 268 MB of additional disk space will be used. 290s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 290s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 290s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 290s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 290s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 290s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-1.1ubuntu2 [189 kB] 290s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 290s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common-data armhf 0.8-14ubuntu1 [30.5 kB] 290s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common3 armhf 0.8-14ubuntu1 [19.5 kB] 290s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-client3 armhf 0.8-14ubuntu1 [23.6 kB] 290s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-4 [126 kB] 290s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libcups2t64 armhf 2.4.11-0ubuntu2 [243 kB] 290s Get:13 http://ftpmaster.internal/ubuntu plucky/universe armhf libdouble-conversion3 armhf 3.3.0-1build1 [38.6 kB] 290s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-radeon1 armhf 2.4.123-1 [18.1 kB] 290s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-server0 armhf 1.23.0-1 [29.4 kB] 290s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 290s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libglapi-mesa armhf 24.2.8-1ubuntu1 [49.5 kB] 291s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libllvm19 armhf 1:19.1.6-1ubuntu1 [27.8 MB] 291s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B] 291s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-dri2-0 armhf 1.17.0-2 [6868 B] 291s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 291s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 291s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 291s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 291s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libxshmfence1 armhf 1.3-1build5 [4464 B] 291s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf mesa-libgallium armhf 24.2.8-1ubuntu1 [7907 kB] 292s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libgbm1 armhf 24.2.8-1ubuntu1 [28.2 kB] 292s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-client0 armhf 1.23.0-1 [22.7 kB] 292s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 292s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libegl-mesa0 armhf 24.2.8-1ubuntu1 [106 kB] 292s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-12ubuntu1 [311 kB] 292s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libvulkan1 armhf 1.3.296.0-1 [114 kB] 292s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1-mesa-dri armhf 24.2.8-1ubuntu1 [30.9 kB] 292s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 292s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 292s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libxfixes3 armhf 1:6.0.0-2build1 [9038 B] 292s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 292s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libglx-mesa0 armhf 24.2.8-1ubuntu1 [131 kB] 292s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 292s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 292s Get:41 http://ftpmaster.internal/ubuntu plucky/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 292s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-12ubuntu1 [125 kB] 292s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 292s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.1.0-1 [464 kB] 292s Get:45 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 292s Get:46 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-5ubuntu1 [1266 kB] 292s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-5ubuntu1 [56.2 kB] 292s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 292s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 292s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libwacom-common all 2.13.0-1 [98.6 kB] 292s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libwacom9 armhf 2.13.0-1 [22.3 kB] 292s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libinput-bin armhf 1.26.2-1 [25.2 kB] 292s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libmtdev1t64 armhf 1.1.6-1.2 [13.2 kB] 292s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libinput10 armhf 1.26.2-1 [119 kB] 292s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 292s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 292s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-4 [2086 kB] 292s Get:58 http://ftpmaster.internal/ubuntu plucky/universe armhf libmd4c0 armhf 0.5.2-2 [38.2 kB] 292s Get:59 http://ftpmaster.internal/ubuntu plucky/universe armhf libnetcdf19t64 armhf 1:4.9.2-6ubuntu1 [419 kB] 292s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-16-0 armhf 10.42-4ubuntu3 [186 kB] 292s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12t64 armhf 3.12.8-3 [2094 kB] 292s Get:62 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5core5t64 armhf 5.15.15+dfsg-1ubuntu1 [1765 kB] 292s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5dbus5t64 armhf 5.15.15+dfsg-1ubuntu1 [198 kB] 292s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libegl1 armhf 1.7.0-1build1 [29.8 kB] 292s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libgles2 armhf 1.7.0-1build1 [18.0 kB] 292s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5network5t64 armhf 5.15.15+dfsg-1ubuntu1 [654 kB] 292s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB] 292s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-icccm4 armhf 0.4.2-1 [9840 B] 292s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-util1 armhf 0.4.0-1build3 [9224 B] 292s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-image0 armhf 0.4.0-2build1 [9680 B] 292s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-keysyms1 armhf 0.4.0-1build4 [7260 B] 292s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 292s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render-util0 armhf 0.3.9-1build4 [8648 B] 292s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shape0 armhf 1.17.0-2 [6030 B] 292s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xinerama0 armhf 1.17.0-2 [5212 B] 292s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xinput0 armhf 1.17.0-2 [29.5 kB] 292s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xkb1 armhf 1.17.0-2 [28.8 kB] 292s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libxkbcommon-x11-0 armhf 1.7.0-2 [13.6 kB] 292s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 292s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5gui5t64 armhf 5.15.15+dfsg-1ubuntu1 [2971 kB] 292s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5widgets5t64 armhf 5.15.15+dfsg-1ubuntu1 [2261 kB] 292s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5xml5t64 armhf 5.15.15+dfsg-1ubuntu1 [108 kB] 292s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5designer5 armhf 5.15.15-4 [2729 kB] 292s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5sql5t64 armhf 5.15.15+dfsg-1ubuntu1 [108 kB] 292s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5help5 armhf 5.15.15-4 [145 kB] 293s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5opengl5t64 armhf 5.15.15+dfsg-1ubuntu1 [126 kB] 293s Get:87 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5printsupport5t64 armhf 5.15.15+dfsg-1ubuntu1 [192 kB] 293s Get:88 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5test5t64 armhf 5.15.15+dfsg-1ubuntu1 [135 kB] 293s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-12 [4001 kB] 293s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 293s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf libglu1-mesa armhf 9.0.2-1.1build1 [153 kB] 293s Get:92 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-opengl all 3.1.7+dfsg-1 [612 kB] 293s Get:93 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5.sip armhf 12.16.1-1 [59.3 kB] 293s Get:94 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5 armhf 5.15.11+dfsg-1build1 [2206 kB] 293s Get:95 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5.qtopengl armhf 5.15.11+dfsg-1build1 [46.9 kB] 293s Get:96 http://ftpmaster.internal/ubuntu plucky/universe armhf pymol-data all 3.0.0+dfsg-1build1 [1394 kB] 293s Get:97 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pymol armhf 3.0.0+dfsg-1build1 [4004 kB] 293s Get:98 http://ftpmaster.internal/ubuntu plucky/universe armhf pymol all 3.0.0+dfsg-1build1 [126 kB] 294s Fetched 71.1 MB in 3s (21.8 MB/s) 294s Selecting previously unselected package libfreetype6:armhf. 294s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59998 files and directories currently installed.) 294s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 294s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 294s Selecting previously unselected package fonts-dejavu-mono. 294s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 294s Unpacking fonts-dejavu-mono (2.37-8) ... 294s Selecting previously unselected package fonts-dejavu-core. 294s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 294s Unpacking fonts-dejavu-core (2.37-8) ... 294s Selecting previously unselected package fontconfig-config. 294s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 294s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 294s Selecting previously unselected package libfontconfig1:armhf. 294s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 294s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 294s Selecting previously unselected package fontconfig. 294s Preparing to unpack .../05-fontconfig_2.15.0-1.1ubuntu2_armhf.deb ... 294s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 294s Selecting previously unselected package libaec0:armhf. 294s Preparing to unpack .../06-libaec0_1.1.3-1_armhf.deb ... 294s Unpacking libaec0:armhf (1.1.3-1) ... 294s Selecting previously unselected package libavahi-common-data:armhf. 294s Preparing to unpack .../07-libavahi-common-data_0.8-14ubuntu1_armhf.deb ... 294s Unpacking libavahi-common-data:armhf (0.8-14ubuntu1) ... 294s Selecting previously unselected package libavahi-common3:armhf. 294s Preparing to unpack .../08-libavahi-common3_0.8-14ubuntu1_armhf.deb ... 294s Unpacking libavahi-common3:armhf (0.8-14ubuntu1) ... 294s Selecting previously unselected package libavahi-client3:armhf. 294s Preparing to unpack .../09-libavahi-client3_0.8-14ubuntu1_armhf.deb ... 294s Unpacking libavahi-client3:armhf (0.8-14ubuntu1) ... 294s Selecting previously unselected package libblas3:armhf. 294s Preparing to unpack .../10-libblas3_3.12.0-4_armhf.deb ... 294s Unpacking libblas3:armhf (3.12.0-4) ... 294s Selecting previously unselected package libcups2t64:armhf. 294s Preparing to unpack .../11-libcups2t64_2.4.11-0ubuntu2_armhf.deb ... 294s Unpacking libcups2t64:armhf (2.4.11-0ubuntu2) ... 294s Selecting previously unselected package libdouble-conversion3:armhf. 294s Preparing to unpack .../12-libdouble-conversion3_3.3.0-1build1_armhf.deb ... 294s Unpacking libdouble-conversion3:armhf (3.3.0-1build1) ... 294s Selecting previously unselected package libdrm-radeon1:armhf. 294s Preparing to unpack .../13-libdrm-radeon1_2.4.123-1_armhf.deb ... 294s Unpacking libdrm-radeon1:armhf (2.4.123-1) ... 294s Selecting previously unselected package libwayland-server0:armhf. 294s Preparing to unpack .../14-libwayland-server0_1.23.0-1_armhf.deb ... 294s Unpacking libwayland-server0:armhf (1.23.0-1) ... 294s Selecting previously unselected package libxcb-randr0:armhf. 294s Preparing to unpack .../15-libxcb-randr0_1.17.0-2_armhf.deb ... 294s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 294s Selecting previously unselected package libglapi-mesa:armhf. 295s Preparing to unpack .../16-libglapi-mesa_24.2.8-1ubuntu1_armhf.deb ... 295s Unpacking libglapi-mesa:armhf (24.2.8-1ubuntu1) ... 295s Selecting previously unselected package libllvm19:armhf. 295s Preparing to unpack .../17-libllvm19_1%3a19.1.6-1ubuntu1_armhf.deb ... 295s Unpacking libllvm19:armhf (1:19.1.6-1ubuntu1) ... 295s Selecting previously unselected package libx11-xcb1:armhf. 295s Preparing to unpack .../18-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... 295s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... 295s Selecting previously unselected package libxcb-dri2-0:armhf. 296s Preparing to unpack .../19-libxcb-dri2-0_1.17.0-2_armhf.deb ... 296s Unpacking libxcb-dri2-0:armhf (1.17.0-2) ... 296s Selecting previously unselected package libxcb-dri3-0:armhf. 296s Preparing to unpack .../20-libxcb-dri3-0_1.17.0-2_armhf.deb ... 296s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 296s Selecting previously unselected package libxcb-present0:armhf. 296s Preparing to unpack .../21-libxcb-present0_1.17.0-2_armhf.deb ... 296s Unpacking libxcb-present0:armhf (1.17.0-2) ... 296s Selecting previously unselected package libxcb-sync1:armhf. 296s Preparing to unpack .../22-libxcb-sync1_1.17.0-2_armhf.deb ... 296s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 296s Selecting previously unselected package libxcb-xfixes0:armhf. 296s Preparing to unpack .../23-libxcb-xfixes0_1.17.0-2_armhf.deb ... 296s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 296s Selecting previously unselected package libxshmfence1:armhf. 296s Preparing to unpack .../24-libxshmfence1_1.3-1build5_armhf.deb ... 296s Unpacking libxshmfence1:armhf (1.3-1build5) ... 296s Selecting previously unselected package mesa-libgallium:armhf. 296s Preparing to unpack .../25-mesa-libgallium_24.2.8-1ubuntu1_armhf.deb ... 296s Unpacking mesa-libgallium:armhf (24.2.8-1ubuntu1) ... 296s Selecting previously unselected package libgbm1:armhf. 296s Preparing to unpack .../26-libgbm1_24.2.8-1ubuntu1_armhf.deb ... 296s Unpacking libgbm1:armhf (24.2.8-1ubuntu1) ... 296s Selecting previously unselected package libwayland-client0:armhf. 296s Preparing to unpack .../27-libwayland-client0_1.23.0-1_armhf.deb ... 296s Unpacking libwayland-client0:armhf (1.23.0-1) ... 296s Selecting previously unselected package libxcb-shm0:armhf. 296s Preparing to unpack .../28-libxcb-shm0_1.17.0-2_armhf.deb ... 296s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 296s Selecting previously unselected package libegl-mesa0:armhf. 296s Preparing to unpack .../29-libegl-mesa0_24.2.8-1ubuntu1_armhf.deb ... 296s Unpacking libegl-mesa0:armhf (24.2.8-1ubuntu1) ... 296s Selecting previously unselected package libgfortran5:armhf. 296s Preparing to unpack .../30-libgfortran5_14.2.0-12ubuntu1_armhf.deb ... 296s Unpacking libgfortran5:armhf (14.2.0-12ubuntu1) ... 296s Selecting previously unselected package libvulkan1:armhf. 296s Preparing to unpack .../31-libvulkan1_1.3.296.0-1_armhf.deb ... 296s Unpacking libvulkan1:armhf (1.3.296.0-1) ... 296s Selecting previously unselected package libgl1-mesa-dri:armhf. 296s Preparing to unpack .../32-libgl1-mesa-dri_24.2.8-1ubuntu1_armhf.deb ... 296s Unpacking libgl1-mesa-dri:armhf (24.2.8-1ubuntu1) ... 296s Selecting previously unselected package libglvnd0:armhf. 296s Preparing to unpack .../33-libglvnd0_1.7.0-1build1_armhf.deb ... 296s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 296s Selecting previously unselected package libxcb-glx0:armhf. 296s Preparing to unpack .../34-libxcb-glx0_1.17.0-2_armhf.deb ... 296s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 296s Selecting previously unselected package libxfixes3:armhf. 296s Preparing to unpack .../35-libxfixes3_1%3a6.0.0-2build1_armhf.deb ... 296s Unpacking libxfixes3:armhf (1:6.0.0-2build1) ... 296s Selecting previously unselected package libxxf86vm1:armhf. 296s Preparing to unpack .../36-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 296s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 297s Selecting previously unselected package libglx-mesa0:armhf. 297s Preparing to unpack .../37-libglx-mesa0_24.2.8-1ubuntu1_armhf.deb ... 297s Unpacking libglx-mesa0:armhf (24.2.8-1ubuntu1) ... 297s Selecting previously unselected package libglx0:armhf. 297s Preparing to unpack .../38-libglx0_1.7.0-1build1_armhf.deb ... 297s Unpacking libglx0:armhf (1.7.0-1build1) ... 297s Selecting previously unselected package libgl1:armhf. 297s Preparing to unpack .../39-libgl1_1.7.0-1build1_armhf.deb ... 297s Unpacking libgl1:armhf (1.7.0-1build1) ... 297s Selecting previously unselected package libglew2.2:armhf. 297s Preparing to unpack .../40-libglew2.2_2.2.0-4build1_armhf.deb ... 297s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 297s Selecting previously unselected package libgomp1:armhf. 297s Preparing to unpack .../41-libgomp1_14.2.0-12ubuntu1_armhf.deb ... 297s Unpacking libgomp1:armhf (14.2.0-12ubuntu1) ... 297s Selecting previously unselected package libgraphite2-3:armhf. 297s Preparing to unpack .../42-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 297s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 297s Selecting previously unselected package libharfbuzz0b:armhf. 297s Preparing to unpack .../43-libharfbuzz0b_10.1.0-1_armhf.deb ... 297s Unpacking libharfbuzz0b:armhf (10.1.0-1) ... 297s Selecting previously unselected package libsz2:armhf. 297s Preparing to unpack .../44-libsz2_1.1.3-1_armhf.deb ... 297s Unpacking libsz2:armhf (1.1.3-1) ... 297s Selecting previously unselected package libhdf5-103-1t64:armhf. 297s Preparing to unpack .../45-libhdf5-103-1t64_1.10.10+repack-5ubuntu1_armhf.deb ... 297s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-5ubuntu1) ... 297s Selecting previously unselected package libhdf5-hl-100t64:armhf. 297s Preparing to unpack .../46-libhdf5-hl-100t64_1.10.10+repack-5ubuntu1_armhf.deb ... 297s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-5ubuntu1) ... 297s Selecting previously unselected package x11-common. 297s Preparing to unpack .../47-x11-common_1%3a7.7+23ubuntu3_all.deb ... 297s Unpacking x11-common (1:7.7+23ubuntu3) ... 297s Selecting previously unselected package libice6:armhf. 297s Preparing to unpack .../48-libice6_2%3a1.1.1-1_armhf.deb ... 297s Unpacking libice6:armhf (2:1.1.1-1) ... 297s Selecting previously unselected package libwacom-common. 297s Preparing to unpack .../49-libwacom-common_2.13.0-1_all.deb ... 297s Unpacking libwacom-common (2.13.0-1) ... 297s Selecting previously unselected package libwacom9:armhf. 297s Preparing to unpack .../50-libwacom9_2.13.0-1_armhf.deb ... 297s Unpacking libwacom9:armhf (2.13.0-1) ... 297s Selecting previously unselected package libinput-bin. 297s Preparing to unpack .../51-libinput-bin_1.26.2-1_armhf.deb ... 297s Unpacking libinput-bin (1.26.2-1) ... 297s Selecting previously unselected package libmtdev1t64:armhf. 297s Preparing to unpack .../52-libmtdev1t64_1.1.6-1.2_armhf.deb ... 297s Unpacking libmtdev1t64:armhf (1.1.6-1.2) ... 297s Selecting previously unselected package libinput10:armhf. 297s Preparing to unpack .../53-libinput10_1.26.2-1_armhf.deb ... 297s Unpacking libinput10:armhf (1.26.2-1) ... 297s Selecting previously unselected package libjpeg-turbo8:armhf. 297s Preparing to unpack .../54-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 297s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 297s Selecting previously unselected package libjpeg8:armhf. 297s Preparing to unpack .../55-libjpeg8_8c-2ubuntu11_armhf.deb ... 297s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 297s Selecting previously unselected package liblapack3:armhf. 298s Preparing to unpack .../56-liblapack3_3.12.0-4_armhf.deb ... 298s Unpacking liblapack3:armhf (3.12.0-4) ... 298s Selecting previously unselected package libmd4c0:armhf. 298s Preparing to unpack .../57-libmd4c0_0.5.2-2_armhf.deb ... 298s Unpacking libmd4c0:armhf (0.5.2-2) ... 298s Selecting previously unselected package libnetcdf19t64:armhf. 298s Preparing to unpack .../58-libnetcdf19t64_1%3a4.9.2-6ubuntu1_armhf.deb ... 298s Unpacking libnetcdf19t64:armhf (1:4.9.2-6ubuntu1) ... 298s Selecting previously unselected package libpcre2-16-0:armhf. 298s Preparing to unpack .../59-libpcre2-16-0_10.42-4ubuntu3_armhf.deb ... 298s Unpacking libpcre2-16-0:armhf (10.42-4ubuntu3) ... 298s Selecting previously unselected package libpython3.12t64:armhf. 298s Preparing to unpack .../60-libpython3.12t64_3.12.8-3_armhf.deb ... 298s Unpacking libpython3.12t64:armhf (3.12.8-3) ... 298s Selecting previously unselected package libqt5core5t64:armhf. 298s Preparing to unpack .../61-libqt5core5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 298s Unpacking libqt5core5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 298s Selecting previously unselected package libqt5dbus5t64:armhf. 298s Preparing to unpack .../62-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 298s Unpacking libqt5dbus5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 298s Selecting previously unselected package libegl1:armhf. 298s Preparing to unpack .../63-libegl1_1.7.0-1build1_armhf.deb ... 298s Unpacking libegl1:armhf (1.7.0-1build1) ... 298s Selecting previously unselected package libgles2:armhf. 298s Preparing to unpack .../64-libgles2_1.7.0-1build1_armhf.deb ... 298s Unpacking libgles2:armhf (1.7.0-1build1) ... 298s Selecting previously unselected package libqt5network5t64:armhf. 298s Preparing to unpack .../65-libqt5network5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 298s Unpacking libqt5network5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 298s Selecting previously unselected package libsm6:armhf. 298s Preparing to unpack .../66-libsm6_2%3a1.2.4-1_armhf.deb ... 298s Unpacking libsm6:armhf (2:1.2.4-1) ... 298s Selecting previously unselected package libxcb-icccm4:armhf. 298s Preparing to unpack .../67-libxcb-icccm4_0.4.2-1_armhf.deb ... 298s Unpacking libxcb-icccm4:armhf (0.4.2-1) ... 298s Selecting previously unselected package libxcb-util1:armhf. 298s Preparing to unpack .../68-libxcb-util1_0.4.0-1build3_armhf.deb ... 298s Unpacking libxcb-util1:armhf (0.4.0-1build3) ... 298s Selecting previously unselected package libxcb-image0:armhf. 298s Preparing to unpack .../69-libxcb-image0_0.4.0-2build1_armhf.deb ... 298s Unpacking libxcb-image0:armhf (0.4.0-2build1) ... 298s Selecting previously unselected package libxcb-keysyms1:armhf. 298s Preparing to unpack .../70-libxcb-keysyms1_0.4.0-1build4_armhf.deb ... 298s Unpacking libxcb-keysyms1:armhf (0.4.0-1build4) ... 298s Selecting previously unselected package libxcb-render0:armhf. 298s Preparing to unpack .../71-libxcb-render0_1.17.0-2_armhf.deb ... 298s Unpacking libxcb-render0:armhf (1.17.0-2) ... 298s Selecting previously unselected package libxcb-render-util0:armhf. 298s Preparing to unpack .../72-libxcb-render-util0_0.3.9-1build4_armhf.deb ... 298s Unpacking libxcb-render-util0:armhf (0.3.9-1build4) ... 298s Selecting previously unselected package libxcb-shape0:armhf. 298s Preparing to unpack .../73-libxcb-shape0_1.17.0-2_armhf.deb ... 298s Unpacking libxcb-shape0:armhf (1.17.0-2) ... 298s Selecting previously unselected package libxcb-xinerama0:armhf. 298s Preparing to unpack .../74-libxcb-xinerama0_1.17.0-2_armhf.deb ... 298s Unpacking libxcb-xinerama0:armhf (1.17.0-2) ... 298s Selecting previously unselected package libxcb-xinput0:armhf. 298s Preparing to unpack .../75-libxcb-xinput0_1.17.0-2_armhf.deb ... 298s Unpacking libxcb-xinput0:armhf (1.17.0-2) ... 298s Selecting previously unselected package libxcb-xkb1:armhf. 298s Preparing to unpack .../76-libxcb-xkb1_1.17.0-2_armhf.deb ... 299s Unpacking libxcb-xkb1:armhf (1.17.0-2) ... 299s Selecting previously unselected package libxkbcommon-x11-0:armhf. 299s Preparing to unpack .../77-libxkbcommon-x11-0_1.7.0-2_armhf.deb ... 299s Unpacking libxkbcommon-x11-0:armhf (1.7.0-2) ... 299s Selecting previously unselected package libxrender1:armhf. 299s Preparing to unpack .../78-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 299s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 299s Selecting previously unselected package libqt5gui5t64:armhf. 299s Preparing to unpack .../79-libqt5gui5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 299s Unpacking libqt5gui5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 299s Selecting previously unselected package libqt5widgets5t64:armhf. 299s Preparing to unpack .../80-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 299s Unpacking libqt5widgets5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 299s Selecting previously unselected package libqt5xml5t64:armhf. 299s Preparing to unpack .../81-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 299s Unpacking libqt5xml5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 299s Selecting previously unselected package libqt5designer5:armhf. 299s Preparing to unpack .../82-libqt5designer5_5.15.15-4_armhf.deb ... 299s Unpacking libqt5designer5:armhf (5.15.15-4) ... 299s Selecting previously unselected package libqt5sql5t64:armhf. 299s Preparing to unpack .../83-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 299s Unpacking libqt5sql5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 299s Selecting previously unselected package libqt5help5:armhf. 299s Preparing to unpack .../84-libqt5help5_5.15.15-4_armhf.deb ... 299s Unpacking libqt5help5:armhf (5.15.15-4) ... 299s Selecting previously unselected package libqt5opengl5t64:armhf. 299s Preparing to unpack .../85-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 299s Unpacking libqt5opengl5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 299s Selecting previously unselected package libqt5printsupport5t64:armhf. 299s Preparing to unpack .../86-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 299s Unpacking libqt5printsupport5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 299s Selecting previously unselected package libqt5test5t64:armhf. 299s Preparing to unpack .../87-libqt5test5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 299s Unpacking libqt5test5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 299s Selecting previously unselected package python3-numpy. 299s Preparing to unpack .../88-python3-numpy_1%3a1.26.4+ds-12_armhf.deb ... 299s Unpacking python3-numpy (1:1.26.4+ds-12) ... 299s Selecting previously unselected package libopengl0:armhf. 299s Preparing to unpack .../89-libopengl0_1.7.0-1build1_armhf.deb ... 299s Unpacking libopengl0:armhf (1.7.0-1build1) ... 299s Selecting previously unselected package libglu1-mesa:armhf. 299s Preparing to unpack .../90-libglu1-mesa_9.0.2-1.1build1_armhf.deb ... 299s Unpacking libglu1-mesa:armhf (9.0.2-1.1build1) ... 300s Selecting previously unselected package python3-opengl. 300s Preparing to unpack .../91-python3-opengl_3.1.7+dfsg-1_all.deb ... 300s Unpacking python3-opengl (3.1.7+dfsg-1) ... 300s Selecting previously unselected package python3-pyqt5.sip. 300s Preparing to unpack .../92-python3-pyqt5.sip_12.16.1-1_armhf.deb ... 300s Unpacking python3-pyqt5.sip (12.16.1-1) ... 300s Selecting previously unselected package python3-pyqt5. 300s Preparing to unpack .../93-python3-pyqt5_5.15.11+dfsg-1build1_armhf.deb ... 300s Unpacking python3-pyqt5 (5.15.11+dfsg-1build1) ... 300s Selecting previously unselected package python3-pyqt5.qtopengl. 300s Preparing to unpack .../94-python3-pyqt5.qtopengl_5.15.11+dfsg-1build1_armhf.deb ... 300s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 300s Selecting previously unselected package pymol-data. 300s Preparing to unpack .../95-pymol-data_3.0.0+dfsg-1build1_all.deb ... 300s Unpacking pymol-data (3.0.0+dfsg-1build1) ... 300s Selecting previously unselected package python3-pymol. 300s Preparing to unpack .../96-python3-pymol_3.0.0+dfsg-1build1_armhf.deb ... 300s Unpacking python3-pymol (3.0.0+dfsg-1build1) ... 300s Selecting previously unselected package pymol. 301s Preparing to unpack .../97-pymol_3.0.0+dfsg-1build1_all.deb ... 301s Unpacking pymol (3.0.0+dfsg-1build1) ... 301s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 301s Setting up libxcb-dri3-0:armhf (1.17.0-2) ... 301s Setting up libllvm19:armhf (1:19.1.6-1ubuntu1) ... 301s Setting up libwayland-server0:armhf (1.23.0-1) ... 301s Setting up libx11-xcb1:armhf (2:1.8.10-2) ... 301s Setting up libdouble-conversion3:armhf (3.3.0-1build1) ... 301s Setting up libxcb-xfixes0:armhf (1.17.0-2) ... 301s Setting up libxcb-xinput0:armhf (1.17.0-2) ... 301s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 301s Setting up libxcb-render0:armhf (1.17.0-2) ... 301s Setting up libdrm-radeon1:armhf (2.4.123-1) ... 301s Setting up libglvnd0:armhf (1.7.0-1build1) ... 301s Setting up libxcb-glx0:armhf (1.17.0-2) ... 301s Setting up libxcb-keysyms1:armhf (0.4.0-1build4) ... 301s Setting up libxcb-shape0:armhf (1.17.0-2) ... 301s Setting up x11-common (1:7.7+23ubuntu3) ... 301s Setting up libxcb-render-util0:armhf (0.3.9-1build4) ... 301s Setting up libxcb-shm0:armhf (1.17.0-2) ... 301s Setting up libxcb-icccm4:armhf (0.4.2-1) ... 301s Setting up libgomp1:armhf (14.2.0-12ubuntu1) ... 301s Setting up libpcre2-16-0:armhf (10.42-4ubuntu3) ... 301s Setting up libaec0:armhf (1.1.3-1) ... 301s Setting up libopengl0:armhf (1.7.0-1build1) ... 301s Setting up libxcb-util1:armhf (0.4.0-1build3) ... 301s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ... 301s Setting up libxcb-xkb1:armhf (1.17.0-2) ... 301s Setting up libxcb-image0:armhf (0.4.0-2build1) ... 301s Setting up libxcb-present0:armhf (1.17.0-2) ... 301s Setting up libpython3.12t64:armhf (3.12.8-3) ... 301s Setting up libqt5core5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 301s Setting up libblas3:armhf (3.12.0-4) ... 301s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 301s Setting up libxcb-xinerama0:armhf (1.17.0-2) ... 301s Setting up libgles2:armhf (1.7.0-1build1) ... 301s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 301s Setting up libxfixes3:armhf (1:6.0.0-2build1) ... 301s Setting up libxcb-sync1:armhf (1.17.0-2) ... 301s Setting up libavahi-common-data:armhf (0.8-14ubuntu1) ... 301s Setting up pymol-data (3.0.0+dfsg-1build1) ... 301s Setting up libxkbcommon-x11-0:armhf (1.7.0-2) ... 301s Setting up fonts-dejavu-mono (2.37-8) ... 301s Setting up fonts-dejavu-core (2.37-8) ... 301s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 301s Setting up libglapi-mesa:armhf (24.2.8-1ubuntu1) ... 301s Setting up libgfortran5:armhf (14.2.0-12ubuntu1) ... 301s Setting up libvulkan1:armhf (1.3.296.0-1) ... 301s Setting up libxcb-dri2-0:armhf (1.17.0-2) ... 301s Setting up python3-pyqt5.sip (12.16.1-1) ... 301s Setting up libmtdev1t64:armhf (1.1.6-1.2) ... 301s Setting up libxshmfence1:armhf (1.3-1build5) ... 301s Setting up libxcb-randr0:armhf (1.17.0-2) ... 301s Setting up libqt5sql5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 301s Setting up libmd4c0:armhf (0.5.2-2) ... 301s Setting up libharfbuzz0b:armhf (10.1.0-1) ... 301s Setting up libglu1-mesa:armhf (9.0.2-1.1build1) ... 301s Setting up libsz2:armhf (1.1.3-1) ... 301s Setting up libwacom-common (2.13.0-1) ... 301s Setting up libwayland-client0:armhf (1.23.0-1) ... 301s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 301s Setting up libice6:armhf (2:1.1.1-1) ... 301s Setting up mesa-libgallium:armhf (24.2.8-1ubuntu1) ... 301s Setting up liblapack3:armhf (3.12.0-4) ... 301s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 301s Setting up libqt5dbus5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 301s Setting up libgbm1:armhf (24.2.8-1ubuntu1) ... 301s Setting up libwacom9:armhf (2.13.0-1) ... 301s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 301s Setting up libgl1-mesa-dri:armhf (24.2.8-1ubuntu1) ... 301s Setting up libqt5network5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 301s Setting up libavahi-common3:armhf (0.8-14ubuntu1) ... 301s Setting up libqt5xml5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 301s Setting up libqt5test5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 301s Setting up libinput-bin (1.26.2-1) ... 301s Setting up libegl-mesa0:armhf (24.2.8-1ubuntu1) ... 301s Setting up python3-numpy (1:1.26.4+ds-12) ... 304s Setting up libegl1:armhf (1.7.0-1build1) ... 304s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-5ubuntu1) ... 304s Setting up libsm6:armhf (2:1.2.4-1) ... 304s Setting up libavahi-client3:armhf (0.8-14ubuntu1) ... 304s Setting up libinput10:armhf (1.26.2-1) ... 304s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-5ubuntu1) ... 304s Setting up libnetcdf19t64:armhf (1:4.9.2-6ubuntu1) ... 304s Setting up libglx-mesa0:armhf (24.2.8-1ubuntu1) ... 304s Setting up libglx0:armhf (1.7.0-1build1) ... 304s Setting up libgl1:armhf (1.7.0-1build1) ... 304s Setting up libglew2.2:armhf (2.2.0-4build1) ... 304s Setting up libcups2t64:armhf (2.4.11-0ubuntu2) ... 304s Setting up python3-opengl (3.1.7+dfsg-1) ... 304s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 304s '''OpenGL extension AMD.vertex_shader_tessellator 306s Processing triggers for udev (257-2ubuntu1) ... 306s Processing triggers for sgml-base (1.31) ... 306s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 306s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 308s Regenerating fonts cache... done. 308s Processing triggers for libc-bin (2.40-4ubuntu1) ... 308s Processing triggers for man-db (2.13.0-1) ... 309s Setting up libqt5gui5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 309s Setting up libqt5widgets5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 309s Setting up libqt5help5:armhf (5.15.15-4) ... 309s Setting up libqt5opengl5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 309s Setting up libqt5printsupport5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 309s Setting up libqt5designer5:armhf (5.15.15-4) ... 309s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 309s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 309s Setting up python3-pymol (3.0.0+dfsg-1build1) ... 310s Setting up pymol (3.0.0+dfsg-1build1) ... 310s Processing triggers for libc-bin (2.40-4ubuntu1) ... 322s autopkgtest [12:26:21]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 322s autopkgtest [12:26:21]: test command1: [----------------------- 325s Search pymol scripts in /tmp/autopkgtest.JbD8t0/build.yBU/src/examples... 325s Processing new directory /tmp/autopkgtest.JbD8t0/build.yBU/src/examples 325s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/chempy/generate_amber.py'... 325s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/chempy/generate_mmff.py'... 325s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/area_diff.pml'... 326s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/build_peptide.py'... 327s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/contact.pml 327s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/dali.py 327s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/density.pml 327s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/groel_es.pml 327s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/multiclip_ray.pml 327s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/packing.pml 327s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/packsurf.pml 327s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/ref_frame.pml 327s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/ribosome.pml 327s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/scenes2movie.pml 327s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/seq_match_sele.pml'... 329s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/ss_xfer.pml 329s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/symsph.py'... 330s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/brick01.py'... 330s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo01.py'... 330s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo02.py'... 334s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo03.py'... 337s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo04.py'... 337s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo05.py'... 337s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo06.py'... 339s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo07.py'... 340s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo08.py'... 340s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo_3Dtext01.py'... 340s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo_axes.py'... 340s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo_label_hack.py'... 343s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo_plane.py'... 344s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/chempy_model01.py'... 344s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/chempy_model02.py'... 344s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/chempy_model03.py'... 348s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/click_ordered_list.py'... 348s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/count_molecules.py'... 348s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/extend_demo01.py'... 348s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/gl01.py'... 349s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/gl02.py'... 349s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/gl03.py'... 353s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/importing.py 353s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/link_demo.py'... 353s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/membrane.py'... 354s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/mutate01.pml'... 354s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/mutate02.py'... 356s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/my_ext_gui.py'... 356s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/particle01.py'... 356s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/particle02.py'... 357s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/pick_wiz.py'... 357s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/povray01.py 357s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/scenes_to_movie01.pml'... 357s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/sd_annotate.pml 357s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/sele_wiz.py'... 358s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/start_pymol.py 358s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/syncmol.py'... 358s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/tkwindow.py 358s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/webgui01.py'... 358s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/webgui02.py'... 358s /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 358s mo = re.search("molid\=([A-Z0-9]+)",self.path) 358s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/xmlrpc01.py 358s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/xmlrpc02.py'... 358s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/launching/launch_demo.py'... 359s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/launching/launch_viewer1.py'... 359s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/launching/launch_viewer2.py'... 359s Processing new directory /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/chempy 359s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/chempy/generate_amber.py'... 359s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/chempy/generate_mmff.py'... 360s Processing new directory /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook 360s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/area_diff.pml'... 360s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/build_peptide.py'... 361s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/contact.pml 361s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/dali.py 361s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/density.pml 361s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/groel_es.pml 361s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/multiclip_ray.pml 361s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/packing.pml 361s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/packsurf.pml 361s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/ref_frame.pml 361s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/ribosome.pml 361s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/scenes2movie.pml 361s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/seq_match_sele.pml'... 363s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/ss_xfer.pml 363s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/cookbook/symsph.py'... 363s Processing new directory /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel 363s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/brick01.py'... 364s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo01.py'... 364s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo02.py'... 367s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo03.py'... 371s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo04.py'... 371s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo05.py'... 371s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo06.py'... 373s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo07.py'... 373s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo08.py'... 374s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo_3Dtext01.py'... 374s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo_axes.py'... 374s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo_label_hack.py'... 377s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/cgo_plane.py'... 377s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/chempy_model01.py'... 378s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/chempy_model02.py'... 378s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/chempy_model03.py'... 381s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/click_ordered_list.py'... 382s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/count_molecules.py'... 382s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/extend_demo01.py'... 382s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/gl01.py'... 383s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/gl02.py'... 383s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/gl03.py'... 387s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/importing.py 387s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/link_demo.py'... 387s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/membrane.py'... 388s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/mutate01.pml'... 388s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/mutate02.py'... 390s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/my_ext_gui.py'... 390s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/particle01.py'... 390s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/particle02.py'... 391s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/pick_wiz.py'... 391s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/povray01.py 391s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/scenes_to_movie01.pml'... 391s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/sd_annotate.pml 391s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/sele_wiz.py'... 391s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/start_pymol.py 391s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/syncmol.py'... 392s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/tkwindow.py 392s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/webgui01.py'... 392s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/webgui02.py'... 392s /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 392s mo = re.search("molid\=([A-Z0-9]+)",self.path) 392s Skip /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/xmlrpc01.py 392s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/devel/xmlrpc02.py'... 392s Processing new directory /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/launching 392s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/launching/launch_demo.py'... 392s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/launching/launch_viewer1.py'... 393s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/examples/launching/launch_viewer2.py'... 393s autopkgtest [12:27:32]: test command1: -----------------------] 398s autopkgtest [12:27:37]: test command1: - - - - - - - - - - results - - - - - - - - - - 398s command1 PASS (superficial) 402s autopkgtest [12:27:41]: test command2: preparing testbed 404s Reading package lists... 405s Building dependency tree... 405s Reading state information... 405s Starting pkgProblemResolver with broken count: 0 405s Starting 2 pkgProblemResolver with broken count: 0 405s Done 406s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 415s autopkgtest [12:27:54]: test command2: sh debian/tests/call-pymol-scripts data/demo 415s autopkgtest [12:27:54]: test command2: [----------------------- 417s Search pymol scripts in /tmp/autopkgtest.JbD8t0/build.yBU/src/data/demo... 417s Processing new directory /tmp/autopkgtest.JbD8t0/build.yBU/src/data/demo 417s Run 'pymol -c /tmp/autopkgtest.JbD8t0/build.yBU/src/data/demo/cgo03.py'... 421s autopkgtest [12:28:00]: test command2: -----------------------] 426s command2 PASS (superficial) 426s autopkgtest [12:28:05]: test command2: - - - - - - - - - - results - - - - - - - - - - 430s autopkgtest [12:28:09]: test command3: preparing testbed 432s Reading package lists... 433s Building dependency tree... 433s Reading state information... 433s Starting pkgProblemResolver with broken count: 0 433s Starting 2 pkgProblemResolver with broken count: 0 433s Done 434s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 443s autopkgtest [12:28:22]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 443s autopkgtest [12:28:22]: test command3: [----------------------- 446s Search pymol scripts in /usr/share/pymol/examples... 446s Processing new directory /usr/share/pymol/examples 446s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 446s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 446s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 446s Skip /usr/share/pymol/examples/cookbook/contact.pml 446s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 446s Skip /usr/share/pymol/examples/cookbook/packing.pml 446s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 446s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 446s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 446s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 446s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 446s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 447s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 447s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 450s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 453s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 454s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 454s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 456s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 456s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 456s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 456s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 457s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 460s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 460s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 460s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 460s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 464s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 464s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 464s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 465s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 465s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 465s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 469s Skip /usr/share/pymol/examples/devel/importing.py 469s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 469s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 469s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 470s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 472s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 472s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 472s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 473s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 473s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 473s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 473s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 473s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 474s Skip /usr/share/pymol/examples/devel/tkwindow.py 474s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 474s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 474s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 474s mo = re.search("molid\=([A-Z0-9]+)",self.path) 474s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 474s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 474s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 474s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 475s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 475s Processing new directory /usr/share/pymol/examples/chempy 475s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 475s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 475s Processing new directory /usr/share/pymol/examples/cookbook 475s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 475s Skip /usr/share/pymol/examples/cookbook/contact.pml 475s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 475s Skip /usr/share/pymol/examples/cookbook/packing.pml 475s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 475s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 475s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 475s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 475s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 475s Processing new directory /usr/share/pymol/examples/devel 475s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 476s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 476s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 479s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 482s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 483s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 483s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 485s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 485s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 485s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 485s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 486s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 489s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 489s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 489s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 490s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 493s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 493s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 494s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 494s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 494s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 495s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 499s Skip /usr/share/pymol/examples/devel/importing.py 499s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 499s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 500s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 500s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 502s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 502s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 503s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 503s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 503s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 503s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 503s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 504s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 504s Skip /usr/share/pymol/examples/devel/tkwindow.py 504s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 504s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 504s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 504s mo = re.search("molid\=([A-Z0-9]+)",self.path) 504s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 504s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 505s Processing new directory /usr/share/pymol/examples/launching 505s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 505s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 505s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 506s autopkgtest [12:29:25]: test command3: -----------------------] 510s command3 PASS (superficial) 510s autopkgtest [12:29:29]: test command3: - - - - - - - - - - results - - - - - - - - - - 515s autopkgtest [12:29:34]: test command4: preparing testbed 518s Reading package lists... 518s Building dependency tree... 518s Reading state information... 518s Starting pkgProblemResolver with broken count: 0 518s Starting 2 pkgProblemResolver with broken count: 0 518s Done 519s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 529s autopkgtest [12:29:48]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 529s autopkgtest [12:29:48]: test command4: [----------------------- 531s Search pymol scripts in /usr/share/pymol/examples/cookbook... 531s Processing new directory /usr/share/pymol/examples/cookbook 531s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 532s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 534s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 534s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 535s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 553s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 556s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 557s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 559s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 561s autopkgtest [12:30:20]: test command4: -----------------------] 566s autopkgtest [12:30:25]: test command4: - - - - - - - - - - results - - - - - - - - - - 566s command4 PASS (superficial) 571s autopkgtest [12:30:30]: test command5: preparing testbed 573s Reading package lists... 573s Building dependency tree... 573s Reading state information... 574s Starting pkgProblemResolver with broken count: 0 574s Starting 2 pkgProblemResolver with broken count: 0 574s Done 575s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 586s autopkgtest [12:30:45]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 586s autopkgtest [12:30:45]: test command5: [----------------------- 589s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 589s Copyright (c) Schrodinger, LLC. 589s All Rights Reserved. 589s 589s Created by Warren L. DeLano, Ph.D. 589s 589s PyMOL is user-supported open-source software. Although some versions 589s are freely available, PyMOL is not in the public domain. 589s 589s If PyMOL is helpful in your work or study, then please volunteer 589s support for our ongoing efforts to create open and affordable scientific 589s software by purchasing a PyMOL Maintenance and/or Support subscription. 589s 589s More information can be found at "http://www.pymol.org". 589s 589s Enter "help" for a list of commands. 589s Enter "help " for information on a specific command. 589s 589s Hit ESC anytime to toggle between text and graphics. 589s 589s Setting: wizard_prompt_mode set to 3. 589s Detected 8 CPU cores. Enabled multithreaded rendering. 589s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 589s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 589s PyMOL>wizard annotation 589s PyMOL>set wizard_prompt_mode,3 589s PyMOL>load_annotated_sdf demo.sdf 589s HBA ['[1, 25, 26, 34]\n'] 589s HBD ['[20]\n'] 589s ACD_NUMBER ['MFCD02681585\n'] 589s SCORE ['-222.044\n'] 589s MOLID ['MFCD02681585\n'] 589s HBA ['[1, 21]\n'] 589s HBD ['[]\n'] 589s ACD_NUMBER ['MFCD01567969\n'] 589s SCORE ['-219.984\n'] 589s MOLID ['MFCD01567969\n'] 589s HBA ['[1, 24]\n'] 589s HBD ['[10, 22]\n'] 589s ACD_NUMBER ['MFCD00023789\n'] 589s SCORE ['-219.911\n'] 589s MOLID ['MFCD00023789\n'] 589s HBA ['[1, 11]\n'] 589s HBD ['[3]\n'] 589s ACD_NUMBER ['MFCD02579443\n'] 589s SCORE ['-219.769\n'] 589s MOLID ['MFCD02579443\n'] 589s HBA ['[1, 11]\n'] 589s HBD ['[9]\n'] 589s ACD_NUMBER ['MFCD02579410\n'] 589s SCORE ['-214.809\n'] 589s MOLID ['MFCD02579410\n'] 589s HBA ['[1, 20, 22, 27, 32]\n'] 589s HBD ['[10, 20]\n'] 589s ACD_NUMBER ['MFCD02579135\n'] 589s SCORE ['-213.630\n'] 589s MOLID ['MFCD02579135\n'] 589s HBA ['[1, 11, 14, 21]\n'] 589s HBD ['[]\n'] 589s ACD_NUMBER ['MFCD02681468\n'] 589s SCORE ['-213.462\n'] 589s MOLID ['MFCD02681468\n'] 589s HBA ['[1, 13, 14, 29]\n'] 589s HBD ['[]\n'] 589s ACD_NUMBER ['MFCD00141070\n'] 589s SCORE ['-213.240\n'] 589s MOLID ['MFCD00141070\n'] 589s HBA ['[1, 8]\n'] 589s HBD ['[]\n'] 589s ACD_NUMBER ['MFCD02983625\n'] 589s SCORE ['-211.422\n'] 589s MOLID ['MFCD02983625\n'] 589s HBA ['[1, 11]\n'] 589s HBD ['[3, 12]\n'] 589s ACD_NUMBER ['MFCD00115818\n'] 589s SCORE ['-210.482\n'] 589s MOLID ['MFCD00115818\n'] 590s autopkgtest [12:30:49]: test command5: -----------------------] 595s autopkgtest [12:30:54]: test command5: - - - - - - - - - - results - - - - - - - - - - 595s command5 PASS (superficial) 601s autopkgtest [12:31:00]: @@@@@@@@@@@@@@@@@@@@ summary 601s command1 PASS (superficial) 601s command2 PASS (superficial) 601s command3 PASS (superficial) 601s command4 PASS (superficial) 601s command5 PASS (superficial)