0s autopkgtest [21:05:07]: starting date and time: 2025-01-03 21:05:07+0000
  1s autopkgtest [21:05:08]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  1s autopkgtest [21:05:08]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8j1iop9l/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:pyqt5 --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pyqt5/5.15.11+dfsg-1build2 -- lxd -r lxd-armhf-10.145.243.201 lxd-armhf-10.145.243.201:autopkgtest/ubuntu/plucky/armhf
 23s autopkgtest [21:05:30]: testbed dpkg architecture: armhf
 26s autopkgtest [21:05:33]: testbed apt version: 2.9.18
 30s autopkgtest [21:05:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 32s autopkgtest [21:05:39]: testbed release detected to be: None
 41s autopkgtest [21:05:48]: updating testbed package index (apt update)
 43s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 43s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [213 kB]
 43s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 44s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 44s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [72.7 kB]
 44s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB]
 44s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B]
 44s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [776 kB]
 44s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [75.5 kB]
 44s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [756 B]
 44s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [734 kB]
 44s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [5440 B]
 44s Get:13 http://ftpmaster.internal/ubuntu plucky/universe Sources [20.9 MB]
 44s Get:14 http://ftpmaster.internal/ubuntu plucky/main Sources [1375 kB]
 44s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1356 kB]
 44s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [14.9 MB]
 48s Fetched 40.6 MB in 5s (7922 kB/s)
 49s Reading package lists...
 56s autopkgtest [21:06:03]: upgrading testbed (apt dist-upgrade and autopurge)
 58s Reading package lists...
 58s Building dependency tree...
 58s Reading state information...
 58s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 59s Starting 2 pkgProblemResolver with broken count: 0
 59s Done
 59s Entering ResolveByKeep
 60s 
 60s The following packages will be upgraded:
 60s   binutils binutils-arm-linux-gnueabihf binutils-common libbinutils
 60s   libctf-nobfd0 libctf0 libsframe1
 60s 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 60s Need to get 3752 kB of archives.
 60s After this operation, 262 kB disk space will be freed.
 60s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libctf0 armhf 2.43.50.20241230-1ubuntu1 [74.5 kB]
 60s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libctf-nobfd0 armhf 2.43.50.20241230-1ubuntu1 [77.3 kB]
 60s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf binutils-arm-linux-gnueabihf armhf 2.43.50.20241230-1ubuntu1 [2960 kB]
 61s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libbinutils armhf 2.43.50.20241230-1ubuntu1 [403 kB]
 61s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf binutils armhf 2.43.50.20241230-1ubuntu1 [3086 B]
 61s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf binutils-common armhf 2.43.50.20241230-1ubuntu1 [222 kB]
 61s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libsframe1 armhf 2.43.50.20241230-1ubuntu1 [12.1 kB]
 61s Fetched 3752 kB in 1s (5548 kB/s)
 61s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 59660 files and directories currently installed.)
 61s Preparing to unpack .../0-libctf0_2.43.50.20241230-1ubuntu1_armhf.deb ...
 61s Unpacking libctf0:armhf (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ...
 61s Preparing to unpack .../1-libctf-nobfd0_2.43.50.20241230-1ubuntu1_armhf.deb ...
 61s Unpacking libctf-nobfd0:armhf (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ...
 61s Preparing to unpack .../2-binutils-arm-linux-gnueabihf_2.43.50.20241230-1ubuntu1_armhf.deb ...
 61s Unpacking binutils-arm-linux-gnueabihf (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ...
 62s Preparing to unpack .../3-libbinutils_2.43.50.20241230-1ubuntu1_armhf.deb ...
 62s Unpacking libbinutils:armhf (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ...
 62s Preparing to unpack .../4-binutils_2.43.50.20241230-1ubuntu1_armhf.deb ...
 62s Unpacking binutils (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ...
 62s Preparing to unpack .../5-binutils-common_2.43.50.20241230-1ubuntu1_armhf.deb ...
 62s Unpacking binutils-common:armhf (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ...
 62s Preparing to unpack .../6-libsframe1_2.43.50.20241230-1ubuntu1_armhf.deb ...
 62s Unpacking libsframe1:armhf (2.43.50.20241230-1ubuntu1) over (2.43.50.20241221-1ubuntu1) ...
 62s Setting up binutils-common:armhf (2.43.50.20241230-1ubuntu1) ...
 62s Setting up libctf-nobfd0:armhf (2.43.50.20241230-1ubuntu1) ...
 62s Setting up libsframe1:armhf (2.43.50.20241230-1ubuntu1) ...
 62s Setting up libbinutils:armhf (2.43.50.20241230-1ubuntu1) ...
 62s Setting up libctf0:armhf (2.43.50.20241230-1ubuntu1) ...
 62s Setting up binutils-arm-linux-gnueabihf (2.43.50.20241230-1ubuntu1) ...
 62s Setting up binutils (2.43.50.20241230-1ubuntu1) ...
 62s Processing triggers for libc-bin (2.40-4ubuntu1) ...
 62s Processing triggers for man-db (2.13.0-1) ...
 65s Reading package lists...
 65s Building dependency tree...
 65s Reading state information...
 66s Starting pkgProblemResolver with broken count: 0
 66s Starting 2 pkgProblemResolver with broken count: 0
 66s Done
 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 69s autopkgtest [21:06:16]: rebooting testbed after setup commands that affected boot
112s autopkgtest [21:06:59]: testbed running kernel: Linux 6.8.0-49-generic #49~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov  6 18:12:14 UTC 2
139s autopkgtest [21:07:26]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol
158s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (dsc) [2304 B]
158s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (tar) [22.0 MB]
158s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (diff) [57.7 kB]
159s gpgv: Signature made Thu Nov 14 18:31:58 2024 UTC
159s gpgv:                using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37
159s gpgv: Can't check signature: No public key
159s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1build1.dsc: no acceptable signature found
160s autopkgtest [21:07:47]: testing package pymol version 3.0.0+dfsg-1build1
162s autopkgtest [21:07:49]: build not needed
166s autopkgtest [21:07:53]: test command1: preparing testbed
169s Reading package lists...
169s Building dependency tree...
169s Reading state information...
169s Starting pkgProblemResolver with broken count: 0
169s Starting 2 pkgProblemResolver with broken count: 0
169s Done
170s The following NEW packages will be installed:
170s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0
170s   libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64
170s   libdouble-conversion3 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1
170s   libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa
170s   libgles2 libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1
170s   libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libice6
170s   libinput-bin libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libllvm19
170s   libmd4c0 libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0 libpython3.13
170s   libpython3.13-minimal libpython3.13-stdlib libqt5core5t64 libqt5dbus5t64
170s   libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64
170s   libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64
170s   libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9
170s   libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0
170s   libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1
170s   libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0
170s   libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0
170s   libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0
170s   libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data
170s   python3-numpy python3-opengl python3-pymol python3-pyqt5
170s   python3-pyqt5.qtopengl python3-pyqt5.sip x11-common
170s 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded.
170s Need to get 73.9 MB of archives.
170s After this operation, 281 MB of additional disk space will be used.
170s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB]
171s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
171s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
171s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB]
171s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB]
171s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-1.1ubuntu2 [189 kB]
171s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB]
171s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common-data armhf 0.8-14ubuntu1 [30.5 kB]
171s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common3 armhf 0.8-14ubuntu1 [19.5 kB]
171s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-client3 armhf 0.8-14ubuntu1 [23.6 kB]
171s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-4 [126 kB]
171s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libcups2t64 armhf 2.4.11-0ubuntu2 [243 kB]
171s Get:13 http://ftpmaster.internal/ubuntu plucky/universe armhf libdouble-conversion3 armhf 3.3.0-1build1 [38.6 kB]
171s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-radeon1 armhf 2.4.123-1 [18.1 kB]
171s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-server0 armhf 1.23.0-1 [29.4 kB]
171s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB]
171s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libglapi-mesa armhf 24.2.8-1ubuntu1 [49.5 kB]
171s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libllvm19 armhf 1:19.1.6-1ubuntu1 [27.8 MB]
172s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B]
172s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-dri2-0 armhf 1.17.0-2 [6868 B]
172s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B]
172s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B]
172s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B]
172s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB]
172s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libxshmfence1 armhf 1.3-1build5 [4464 B]
172s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf mesa-libgallium armhf 24.2.8-1ubuntu1 [7907 kB]
172s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libgbm1 armhf 24.2.8-1ubuntu1 [28.2 kB]
172s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-client0 armhf 1.23.0-1 [22.7 kB]
172s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B]
172s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libegl-mesa0 armhf 24.2.8-1ubuntu1 [106 kB]
172s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-12ubuntu1 [311 kB]
172s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libvulkan1 armhf 1.3.296.0-1 [114 kB]
172s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1-mesa-dri armhf 24.2.8-1ubuntu1 [30.9 kB]
172s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB]
172s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB]
172s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libxfixes3 armhf 1:6.0.0-2build1 [9038 B]
172s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B]
172s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libglx-mesa0 armhf 24.2.8-1ubuntu1 [131 kB]
172s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB]
172s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1 armhf 1.7.0-1build1 [105 kB]
172s Get:41 http://ftpmaster.internal/ubuntu plucky/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB]
172s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-12ubuntu1 [125 kB]
172s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB]
172s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.1.0-1 [464 kB]
172s Get:45 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B]
172s Get:46 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-5ubuntu1 [1266 kB]
172s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-5ubuntu1 [56.2 kB]
172s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB]
172s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB]
172s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libwacom-common all 2.13.0-1 [98.6 kB]
172s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libwacom9 armhf 2.13.0-1 [22.3 kB]
172s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libinput-bin armhf 1.26.2-1 [25.2 kB]
172s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libmtdev1t64 armhf 1.1.6-1.2 [13.2 kB]
172s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libinput10 armhf 1.26.2-1 [119 kB]
172s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB]
172s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
172s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-4 [2086 kB]
172s Get:58 http://ftpmaster.internal/ubuntu plucky/universe armhf libmd4c0 armhf 0.5.2-2 [38.2 kB]
172s Get:59 http://ftpmaster.internal/ubuntu plucky/universe armhf libnetcdf19t64 armhf 1:4.9.2-6ubuntu1 [419 kB]
172s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-16-0 armhf 10.42-4ubuntu3 [186 kB]
172s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.1-2 [868 kB]
172s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.1-2 [1970 kB]
172s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13 armhf 3.13.1-2 [2095 kB]
172s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5core5t64 armhf 5.15.15+dfsg-1ubuntu1 [1765 kB]
172s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5dbus5t64 armhf 5.15.15+dfsg-1ubuntu1 [198 kB]
172s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libegl1 armhf 1.7.0-1build1 [29.8 kB]
172s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libgles2 armhf 1.7.0-1build1 [18.0 kB]
172s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5network5t64 armhf 5.15.15+dfsg-1ubuntu1 [654 kB]
172s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB]
172s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-icccm4 armhf 0.4.2-1 [9840 B]
172s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-util1 armhf 0.4.0-1build3 [9224 B]
172s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-image0 armhf 0.4.0-2build1 [9680 B]
173s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-keysyms1 armhf 0.4.0-1build4 [7260 B]
173s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB]
173s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render-util0 armhf 0.3.9-1build4 [8648 B]
173s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shape0 armhf 1.17.0-2 [6030 B]
173s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xinerama0 armhf 1.17.0-2 [5212 B]
173s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xinput0 armhf 1.17.0-2 [29.5 kB]
173s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xkb1 armhf 1.17.0-2 [28.8 kB]
173s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libxkbcommon-x11-0 armhf 1.7.0-2 [13.6 kB]
173s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB]
173s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5gui5t64 armhf 5.15.15+dfsg-1ubuntu1 [2971 kB]
173s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5widgets5t64 armhf 5.15.15+dfsg-1ubuntu1 [2261 kB]
173s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5xml5t64 armhf 5.15.15+dfsg-1ubuntu1 [108 kB]
173s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5designer5 armhf 5.15.15-4 [2729 kB]
173s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5sql5t64 armhf 5.15.15+dfsg-1ubuntu1 [108 kB]
173s Get:87 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5help5 armhf 5.15.15-4 [145 kB]
173s Get:88 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5opengl5t64 armhf 5.15.15+dfsg-1ubuntu1 [126 kB]
173s Get:89 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5printsupport5t64 armhf 5.15.15+dfsg-1ubuntu1 [192 kB]
173s Get:90 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5test5t64 armhf 5.15.15+dfsg-1ubuntu1 [135 kB]
173s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-12 [4001 kB]
173s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB]
173s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf libglu1-mesa armhf 9.0.2-1.1build1 [153 kB]
173s Get:94 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-opengl all 3.1.7+dfsg-1 [612 kB]
173s Get:95 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5.sip armhf 12.16.1-1 [59.3 kB]
173s Get:96 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-pyqt5 armhf 5.15.11+dfsg-1build2 [2199 kB]
173s Get:97 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-pyqt5.qtopengl armhf 5.15.11+dfsg-1build2 [47.5 kB]
173s Get:98 http://ftpmaster.internal/ubuntu plucky/universe armhf pymol-data all 3.0.0+dfsg-1build1 [1394 kB]
173s Get:99 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pymol armhf 3.0.0+dfsg-1build1 [4004 kB]
173s Get:100 http://ftpmaster.internal/ubuntu plucky/universe armhf pymol all 3.0.0+dfsg-1build1 [126 kB]
174s Fetched 73.9 MB in 3s (24.9 MB/s)
174s Selecting previously unselected package libfreetype6:armhf.
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174s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_armhf.deb ...
174s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ...
174s Selecting previously unselected package fonts-dejavu-mono.
174s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
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174s Selecting previously unselected package fonts-dejavu-core.
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174s Unpacking fonts-dejavu-core (2.37-8) ...
174s Selecting previously unselected package fontconfig-config.
174s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ...
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174s Selecting previously unselected package libfontconfig1:armhf.
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174s Selecting previously unselected package libaec0:armhf.
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174s Selecting previously unselected package libavahi-common-data:armhf.
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174s Selecting previously unselected package libavahi-client3:armhf.
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174s Selecting previously unselected package libdrm-radeon1:armhf.
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174s Selecting previously unselected package libwayland-server0:armhf.
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176s Selecting previously unselected package mesa-libgallium:armhf.
176s Preparing to unpack .../25-mesa-libgallium_24.2.8-1ubuntu1_armhf.deb ...
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176s Selecting previously unselected package libgbm1:armhf.
176s Preparing to unpack .../26-libgbm1_24.2.8-1ubuntu1_armhf.deb ...
176s Unpacking libgbm1:armhf (24.2.8-1ubuntu1) ...
176s Selecting previously unselected package libwayland-client0:armhf.
176s Preparing to unpack .../27-libwayland-client0_1.23.0-1_armhf.deb ...
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176s Selecting previously unselected package libxcb-shm0:armhf.
176s Preparing to unpack .../28-libxcb-shm0_1.17.0-2_armhf.deb ...
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176s Selecting previously unselected package libegl-mesa0:armhf.
176s Preparing to unpack .../29-libegl-mesa0_24.2.8-1ubuntu1_armhf.deb ...
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176s Selecting previously unselected package libgfortran5:armhf.
176s Preparing to unpack .../30-libgfortran5_14.2.0-12ubuntu1_armhf.deb ...
176s Unpacking libgfortran5:armhf (14.2.0-12ubuntu1) ...
176s Selecting previously unselected package libvulkan1:armhf.
176s Preparing to unpack .../31-libvulkan1_1.3.296.0-1_armhf.deb ...
176s Unpacking libvulkan1:armhf (1.3.296.0-1) ...
176s Selecting previously unselected package libgl1-mesa-dri:armhf.
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176s Selecting previously unselected package libglvnd0:armhf.
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176s Selecting previously unselected package libxcb-glx0:armhf.
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176s Selecting previously unselected package libxfixes3:armhf.
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176s Selecting previously unselected package libglx-mesa0:armhf.
176s Preparing to unpack .../37-libglx-mesa0_24.2.8-1ubuntu1_armhf.deb ...
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176s Selecting previously unselected package libglx0:armhf.
176s Preparing to unpack .../38-libglx0_1.7.0-1build1_armhf.deb ...
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176s Selecting previously unselected package libglew2.2:armhf.
176s Preparing to unpack .../40-libglew2.2_2.2.0-4build1_armhf.deb ...
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176s Selecting previously unselected package libgomp1:armhf.
176s Preparing to unpack .../41-libgomp1_14.2.0-12ubuntu1_armhf.deb ...
176s Unpacking libgomp1:armhf (14.2.0-12ubuntu1) ...
176s Selecting previously unselected package libgraphite2-3:armhf.
176s Preparing to unpack .../42-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ...
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176s Selecting previously unselected package libharfbuzz0b:armhf.
176s Preparing to unpack .../43-libharfbuzz0b_10.1.0-1_armhf.deb ...
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176s Selecting previously unselected package libsz2:armhf.
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176s Selecting previously unselected package libhdf5-103-1t64:armhf.
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177s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-5ubuntu1) ...
177s Selecting previously unselected package libhdf5-hl-100t64:armhf.
177s Preparing to unpack .../46-libhdf5-hl-100t64_1.10.10+repack-5ubuntu1_armhf.deb ...
177s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-5ubuntu1) ...
177s Selecting previously unselected package x11-common.
177s Preparing to unpack .../47-x11-common_1%3a7.7+23ubuntu3_all.deb ...
177s Unpacking x11-common (1:7.7+23ubuntu3) ...
177s Selecting previously unselected package libice6:armhf.
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177s Selecting previously unselected package libwacom-common.
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177s Selecting previously unselected package libwacom9:armhf.
177s Preparing to unpack .../50-libwacom9_2.13.0-1_armhf.deb ...
177s Unpacking libwacom9:armhf (2.13.0-1) ...
177s Selecting previously unselected package libinput-bin.
177s Preparing to unpack .../51-libinput-bin_1.26.2-1_armhf.deb ...
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177s Selecting previously unselected package libmtdev1t64:armhf.
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177s Selecting previously unselected package libinput10:armhf.
177s Preparing to unpack .../53-libinput10_1.26.2-1_armhf.deb ...
177s Unpacking libinput10:armhf (1.26.2-1) ...
177s Selecting previously unselected package libjpeg-turbo8:armhf.
177s Preparing to unpack .../54-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ...
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177s Selecting previously unselected package libjpeg8:armhf.
177s Preparing to unpack .../55-libjpeg8_8c-2ubuntu11_armhf.deb ...
177s Unpacking libjpeg8:armhf (8c-2ubuntu11) ...
177s Selecting previously unselected package liblapack3:armhf.
177s Preparing to unpack .../56-liblapack3_3.12.0-4_armhf.deb ...
177s Unpacking liblapack3:armhf (3.12.0-4) ...
177s Selecting previously unselected package libmd4c0:armhf.
177s Preparing to unpack .../57-libmd4c0_0.5.2-2_armhf.deb ...
177s Unpacking libmd4c0:armhf (0.5.2-2) ...
177s Selecting previously unselected package libnetcdf19t64:armhf.
177s Preparing to unpack .../58-libnetcdf19t64_1%3a4.9.2-6ubuntu1_armhf.deb ...
177s Unpacking libnetcdf19t64:armhf (1:4.9.2-6ubuntu1) ...
177s Selecting previously unselected package libpcre2-16-0:armhf.
177s Preparing to unpack .../59-libpcre2-16-0_10.42-4ubuntu3_armhf.deb ...
177s Unpacking libpcre2-16-0:armhf (10.42-4ubuntu3) ...
177s Selecting previously unselected package libpython3.13-minimal:armhf.
177s Preparing to unpack .../60-libpython3.13-minimal_3.13.1-2_armhf.deb ...
177s Unpacking libpython3.13-minimal:armhf (3.13.1-2) ...
177s Selecting previously unselected package libpython3.13-stdlib:armhf.
177s Preparing to unpack .../61-libpython3.13-stdlib_3.13.1-2_armhf.deb ...
177s Unpacking libpython3.13-stdlib:armhf (3.13.1-2) ...
177s Selecting previously unselected package libpython3.13:armhf.
177s Preparing to unpack .../62-libpython3.13_3.13.1-2_armhf.deb ...
177s Unpacking libpython3.13:armhf (3.13.1-2) ...
177s Selecting previously unselected package libqt5core5t64:armhf.
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178s Selecting previously unselected package libqt5dbus5t64:armhf.
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178s Unpacking libqt5dbus5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
178s Selecting previously unselected package libegl1:armhf.
178s Preparing to unpack .../65-libegl1_1.7.0-1build1_armhf.deb ...
178s Unpacking libegl1:armhf (1.7.0-1build1) ...
178s Selecting previously unselected package libgles2:armhf.
178s Preparing to unpack .../66-libgles2_1.7.0-1build1_armhf.deb ...
178s Unpacking libgles2:armhf (1.7.0-1build1) ...
178s Selecting previously unselected package libqt5network5t64:armhf.
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178s Unpacking libqt5network5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
178s Selecting previously unselected package libsm6:armhf.
178s Preparing to unpack .../68-libsm6_2%3a1.2.4-1_armhf.deb ...
178s Unpacking libsm6:armhf (2:1.2.4-1) ...
178s Selecting previously unselected package libxcb-icccm4:armhf.
178s Preparing to unpack .../69-libxcb-icccm4_0.4.2-1_armhf.deb ...
178s Unpacking libxcb-icccm4:armhf (0.4.2-1) ...
178s Selecting previously unselected package libxcb-util1:armhf.
178s Preparing to unpack .../70-libxcb-util1_0.4.0-1build3_armhf.deb ...
178s Unpacking libxcb-util1:armhf (0.4.0-1build3) ...
178s Selecting previously unselected package libxcb-image0:armhf.
178s Preparing to unpack .../71-libxcb-image0_0.4.0-2build1_armhf.deb ...
178s Unpacking libxcb-image0:armhf (0.4.0-2build1) ...
178s Selecting previously unselected package libxcb-keysyms1:armhf.
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178s Unpacking libxcb-keysyms1:armhf (0.4.0-1build4) ...
178s Selecting previously unselected package libxcb-render0:armhf.
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178s Unpacking libxcb-render0:armhf (1.17.0-2) ...
178s Selecting previously unselected package libxcb-render-util0:armhf.
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178s Selecting previously unselected package libxcb-shape0:armhf.
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178s Selecting previously unselected package libxcb-xinerama0:armhf.
178s Preparing to unpack .../76-libxcb-xinerama0_1.17.0-2_armhf.deb ...
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178s Selecting previously unselected package libxcb-xinput0:armhf.
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178s Selecting previously unselected package libxcb-xkb1:armhf.
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178s Selecting previously unselected package libxkbcommon-x11-0:armhf.
178s Preparing to unpack .../79-libxkbcommon-x11-0_1.7.0-2_armhf.deb ...
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178s Selecting previously unselected package libxrender1:armhf.
178s Preparing to unpack .../80-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ...
178s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ...
178s Selecting previously unselected package libqt5gui5t64:armhf.
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178s Unpacking libqt5gui5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
178s Selecting previously unselected package libqt5widgets5t64:armhf.
178s Preparing to unpack .../82-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
178s Unpacking libqt5widgets5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
178s Selecting previously unselected package libqt5xml5t64:armhf.
178s Preparing to unpack .../83-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
178s Unpacking libqt5xml5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
178s Selecting previously unselected package libqt5designer5:armhf.
178s Preparing to unpack .../84-libqt5designer5_5.15.15-4_armhf.deb ...
178s Unpacking libqt5designer5:armhf (5.15.15-4) ...
178s Selecting previously unselected package libqt5sql5t64:armhf.
178s Preparing to unpack .../85-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
178s Unpacking libqt5sql5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
178s Selecting previously unselected package libqt5help5:armhf.
178s Preparing to unpack .../86-libqt5help5_5.15.15-4_armhf.deb ...
178s Unpacking libqt5help5:armhf (5.15.15-4) ...
178s Selecting previously unselected package libqt5opengl5t64:armhf.
178s Preparing to unpack .../87-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
178s Unpacking libqt5opengl5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
178s Selecting previously unselected package libqt5printsupport5t64:armhf.
178s Preparing to unpack .../88-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
178s Unpacking libqt5printsupport5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
178s Selecting previously unselected package libqt5test5t64:armhf.
178s Preparing to unpack .../89-libqt5test5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
178s Unpacking libqt5test5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
178s Selecting previously unselected package python3-numpy.
179s Preparing to unpack .../90-python3-numpy_1%3a1.26.4+ds-12_armhf.deb ...
179s Unpacking python3-numpy (1:1.26.4+ds-12) ...
179s Selecting previously unselected package libopengl0:armhf.
179s Preparing to unpack .../91-libopengl0_1.7.0-1build1_armhf.deb ...
179s Unpacking libopengl0:armhf (1.7.0-1build1) ...
179s Selecting previously unselected package libglu1-mesa:armhf.
179s Preparing to unpack .../92-libglu1-mesa_9.0.2-1.1build1_armhf.deb ...
179s Unpacking libglu1-mesa:armhf (9.0.2-1.1build1) ...
179s Selecting previously unselected package python3-opengl.
179s Preparing to unpack .../93-python3-opengl_3.1.7+dfsg-1_all.deb ...
179s Unpacking python3-opengl (3.1.7+dfsg-1) ...
179s Selecting previously unselected package python3-pyqt5.sip.
180s Preparing to unpack .../94-python3-pyqt5.sip_12.16.1-1_armhf.deb ...
180s Unpacking python3-pyqt5.sip (12.16.1-1) ...
180s Selecting previously unselected package python3-pyqt5.
180s Preparing to unpack .../95-python3-pyqt5_5.15.11+dfsg-1build2_armhf.deb ...
180s Unpacking python3-pyqt5 (5.15.11+dfsg-1build2) ...
180s Selecting previously unselected package python3-pyqt5.qtopengl.
180s Preparing to unpack .../96-python3-pyqt5.qtopengl_5.15.11+dfsg-1build2_armhf.deb ...
180s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build2) ...
180s Selecting previously unselected package pymol-data.
180s Preparing to unpack .../97-pymol-data_3.0.0+dfsg-1build1_all.deb ...
180s Unpacking pymol-data (3.0.0+dfsg-1build1) ...
180s Selecting previously unselected package python3-pymol.
180s Preparing to unpack .../98-python3-pymol_3.0.0+dfsg-1build1_armhf.deb ...
180s Unpacking python3-pymol (3.0.0+dfsg-1build1) ...
180s Selecting previously unselected package pymol.
180s Preparing to unpack .../99-pymol_3.0.0+dfsg-1build1_all.deb ...
180s Unpacking pymol (3.0.0+dfsg-1build1) ...
180s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ...
180s Setting up libxcb-dri3-0:armhf (1.17.0-2) ...
180s Setting up libllvm19:armhf (1:19.1.6-1ubuntu1) ...
180s Setting up libwayland-server0:armhf (1.23.0-1) ...
180s Setting up libx11-xcb1:armhf (2:1.8.10-2) ...
180s Setting up libdouble-conversion3:armhf (3.3.0-1build1) ...
180s Setting up libxcb-xfixes0:armhf (1.17.0-2) ...
180s Setting up libxcb-xinput0:armhf (1.17.0-2) ...
180s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ...
180s Setting up libxcb-render0:armhf (1.17.0-2) ...
180s Setting up libdrm-radeon1:armhf (2.4.123-1) ...
180s Setting up libglvnd0:armhf (1.7.0-1build1) ...
180s Setting up libxcb-glx0:armhf (1.17.0-2) ...
180s Setting up libxcb-keysyms1:armhf (0.4.0-1build4) ...
180s Setting up libxcb-shape0:armhf (1.17.0-2) ...
180s Setting up x11-common (1:7.7+23ubuntu3) ...
180s Setting up libxcb-render-util0:armhf (0.3.9-1build4) ...
180s Setting up libxcb-shm0:armhf (1.17.0-2) ...
180s Setting up libxcb-icccm4:armhf (0.4.2-1) ...
180s Setting up libgomp1:armhf (14.2.0-12ubuntu1) ...
180s Setting up libpcre2-16-0:armhf (10.42-4ubuntu3) ...
180s Setting up libaec0:armhf (1.1.3-1) ...
180s Setting up libopengl0:armhf (1.7.0-1build1) ...
180s Setting up libxcb-util1:armhf (0.4.0-1build3) ...
180s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ...
180s Setting up libxcb-xkb1:armhf (1.17.0-2) ...
180s Setting up libxcb-image0:armhf (0.4.0-2build1) ...
180s Setting up libxcb-present0:armhf (1.17.0-2) ...
180s Setting up libpython3.13-minimal:armhf (3.13.1-2) ...
180s Setting up libqt5core5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
180s Setting up libblas3:armhf (3.12.0-4) ...
180s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
180s Setting up libxcb-xinerama0:armhf (1.17.0-2) ...
180s Setting up libgles2:armhf (1.7.0-1build1) ...
180s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ...
180s Setting up libxfixes3:armhf (1:6.0.0-2build1) ...
180s Setting up libxcb-sync1:armhf (1.17.0-2) ...
180s Setting up libavahi-common-data:armhf (0.8-14ubuntu1) ...
180s Setting up pymol-data (3.0.0+dfsg-1build1) ...
180s Setting up libxkbcommon-x11-0:armhf (1.7.0-2) ...
180s Setting up fonts-dejavu-mono (2.37-8) ...
180s Setting up fonts-dejavu-core (2.37-8) ...
180s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ...
180s Setting up libglapi-mesa:armhf (24.2.8-1ubuntu1) ...
180s Setting up libgfortran5:armhf (14.2.0-12ubuntu1) ...
180s Setting up libvulkan1:armhf (1.3.296.0-1) ...
180s Setting up libxcb-dri2-0:armhf (1.17.0-2) ...
180s Setting up python3-pyqt5.sip (12.16.1-1) ...
180s Setting up libmtdev1t64:armhf (1.1.6-1.2) ...
180s Setting up libxshmfence1:armhf (1.3-1build5) ...
180s Setting up libxcb-randr0:armhf (1.17.0-2) ...
180s Setting up libqt5sql5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
180s Setting up libmd4c0:armhf (0.5.2-2) ...
180s Setting up libharfbuzz0b:armhf (10.1.0-1) ...
180s Setting up libglu1-mesa:armhf (9.0.2-1.1build1) ...
180s Setting up libpython3.13-stdlib:armhf (3.13.1-2) ...
180s Setting up libsz2:armhf (1.1.3-1) ...
180s Setting up libwacom-common (2.13.0-1) ...
180s Setting up libwayland-client0:armhf (1.23.0-1) ...
180s Setting up libpython3.13:armhf (3.13.1-2) ...
180s Setting up libjpeg8:armhf (8c-2ubuntu11) ...
180s Setting up libice6:armhf (2:1.1.1-1) ...
180s Setting up mesa-libgallium:armhf (24.2.8-1ubuntu1) ...
180s Setting up liblapack3:armhf (3.12.0-4) ...
180s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
180s Setting up libqt5dbus5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
180s Setting up libgbm1:armhf (24.2.8-1ubuntu1) ...
180s Setting up libwacom9:armhf (2.13.0-1) ...
180s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
181s Setting up libgl1-mesa-dri:armhf (24.2.8-1ubuntu1) ...
181s Setting up libqt5network5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
181s Setting up libavahi-common3:armhf (0.8-14ubuntu1) ...
181s Setting up libqt5xml5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
181s Setting up libqt5test5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
181s Setting up libinput-bin (1.26.2-1) ...
181s Setting up libegl-mesa0:armhf (24.2.8-1ubuntu1) ...
181s Setting up python3-numpy (1:1.26.4+ds-12) ...
183s Setting up libegl1:armhf (1.7.0-1build1) ...
183s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ...
183s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-5ubuntu1) ...
183s Setting up libsm6:armhf (2:1.2.4-1) ...
183s Setting up libavahi-client3:armhf (0.8-14ubuntu1) ...
183s Setting up libinput10:armhf (1.26.2-1) ...
183s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-5ubuntu1) ...
183s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
185s Regenerating fonts cache... done.
185s Setting up libnetcdf19t64:armhf (1:4.9.2-6ubuntu1) ...
185s Setting up libglx-mesa0:armhf (24.2.8-1ubuntu1) ...
185s Setting up libglx0:armhf (1.7.0-1build1) ...
185s Setting up libqt5gui5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
185s Setting up libgl1:armhf (1.7.0-1build1) ...
185s Setting up libglew2.2:armhf (2.2.0-4build1) ...
185s Setting up libcups2t64:armhf (2.4.11-0ubuntu2) ...
185s Setting up libqt5widgets5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
185s Setting up python3-opengl (3.1.7+dfsg-1) ...
185s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ '
185s   '''OpenGL extension AMD.vertex_shader_tessellator
187s Setting up libqt5help5:armhf (5.15.15-4) ...
187s Setting up libqt5opengl5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
187s Setting up libqt5printsupport5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
187s Setting up libqt5designer5:armhf (5.15.15-4) ...
187s Setting up python3-pyqt5 (5.15.11+dfsg-1build2) ...
187s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build2) ...
187s Setting up python3-pymol (3.0.0+dfsg-1build1) ...
188s Setting up pymol (3.0.0+dfsg-1build1) ...
188s Processing triggers for libc-bin (2.40-4ubuntu1) ...
188s Processing triggers for man-db (2.13.0-1) ...
188s Processing triggers for udev (257-2ubuntu1) ...
197s autopkgtest [21:08:24]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)"
197s autopkgtest [21:08:24]: test command1: [-----------------------
199s Search pymol scripts in /tmp/autopkgtest.uALzAW/build.HbW/src/examples...
199s Processing new directory /tmp/autopkgtest.uALzAW/build.HbW/src/examples
199s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/chempy/generate_amber.py'...
199s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/chempy/generate_mmff.py'...
200s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/area_diff.pml'...
200s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/build_peptide.py'...
201s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/contact.pml
201s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/dali.py
201s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/density.pml
201s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/groel_es.pml
201s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/multiclip_ray.pml
201s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/packing.pml
201s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/packsurf.pml
201s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/ref_frame.pml
201s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/ribosome.pml
201s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/scenes2movie.pml
201s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/seq_match_sele.pml'...
203s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/ss_xfer.pml
203s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/symsph.py'...
203s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/brick01.py'...
203s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo01.py'...
203s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo02.py'...
206s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo03.py'...
210s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo04.py'...
210s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo05.py'...
210s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo06.py'...
211s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo07.py'...
212s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo08.py'...
212s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo_3Dtext01.py'...
212s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo_axes.py'...
212s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo_label_hack.py'...
215s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo_plane.py'...
216s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/chempy_model01.py'...
216s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/chempy_model02.py'...
216s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/chempy_model03.py'...
219s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/click_ordered_list.py'...
220s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/count_molecules.py'...
220s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/extend_demo01.py'...
220s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/gl01.py'...
220s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/gl02.py'...
221s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/gl03.py'...
224s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/importing.py
224s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/link_demo.py'...
224s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/membrane.py'...
225s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/mutate01.pml'...
225s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/mutate02.py'...
227s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/my_ext_gui.py'...
227s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/particle01.py'...
228s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/particle02.py'...
228s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/pick_wiz.py'...
228s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/povray01.py
228s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/scenes_to_movie01.pml'...
229s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/sd_annotate.pml
229s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/sele_wiz.py'...
229s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/start_pymol.py
229s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/syncmol.py'...
229s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/tkwindow.py
229s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/webgui01.py'...
230s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/webgui02.py'...
230s /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
230s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
230s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/xmlrpc01.py
230s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/xmlrpc02.py'...
230s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/launching/launch_demo.py'...
230s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/launching/launch_viewer1.py'...
231s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/launching/launch_viewer2.py'...
231s Processing new directory /tmp/autopkgtest.uALzAW/build.HbW/src/examples/chempy
231s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/chempy/generate_amber.py'...
231s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/chempy/generate_mmff.py'...
231s Processing new directory /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook
231s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/area_diff.pml'...
233s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/build_peptide.py'...
233s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/contact.pml
233s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/dali.py
233s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/density.pml
233s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/groel_es.pml
233s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/multiclip_ray.pml
233s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/packing.pml
233s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/packsurf.pml
233s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/ref_frame.pml
233s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/ribosome.pml
233s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/scenes2movie.pml
233s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/seq_match_sele.pml'...
236s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/ss_xfer.pml
236s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/cookbook/symsph.py'...
237s Processing new directory /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel
237s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/brick01.py'...
237s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo01.py'...
238s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo02.py'...
241s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo03.py'...
244s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo04.py'...
244s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo05.py'...
244s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo06.py'...
246s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo07.py'...
246s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo08.py'...
246s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo_3Dtext01.py'...
246s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo_axes.py'...
247s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo_label_hack.py'...
250s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/cgo_plane.py'...
250s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/chempy_model01.py'...
250s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/chempy_model02.py'...
250s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/chempy_model03.py'...
254s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/click_ordered_list.py'...
254s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/count_molecules.py'...
254s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/extend_demo01.py'...
255s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/gl01.py'...
255s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/gl02.py'...
255s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/gl03.py'...
259s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/importing.py
259s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/link_demo.py'...
259s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/membrane.py'...
260s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/mutate01.pml'...
260s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/mutate02.py'...
262s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/my_ext_gui.py'...
262s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/particle01.py'...
262s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/particle02.py'...
263s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/pick_wiz.py'...
263s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/povray01.py
263s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/scenes_to_movie01.pml'...
263s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/sd_annotate.pml
263s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/sele_wiz.py'...
263s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/start_pymol.py
263s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/syncmol.py'...
264s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/tkwindow.py
264s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/webgui01.py'...
264s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/webgui02.py'...
264s /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
264s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
264s Skip /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/xmlrpc01.py
264s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/devel/xmlrpc02.py'...
264s Processing new directory /tmp/autopkgtest.uALzAW/build.HbW/src/examples/launching
264s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/launching/launch_demo.py'...
264s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/launching/launch_viewer1.py'...
265s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/examples/launching/launch_viewer2.py'...
265s autopkgtest [21:09:32]: test command1: -----------------------]
269s command1             PASS (superficial)
269s autopkgtest [21:09:36]: test command1:  - - - - - - - - - - results - - - - - - - - - -
273s autopkgtest [21:09:40]: test command2: preparing testbed
275s Reading package lists...
275s Building dependency tree...
275s Reading state information...
275s Starting pkgProblemResolver with broken count: 0
276s Starting 2 pkgProblemResolver with broken count: 0
276s Done
276s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
284s autopkgtest [21:09:51]: test command2: sh debian/tests/call-pymol-scripts data/demo
284s autopkgtest [21:09:51]: test command2: [-----------------------
286s Search pymol scripts in /tmp/autopkgtest.uALzAW/build.HbW/src/data/demo...
286s Processing new directory /tmp/autopkgtest.uALzAW/build.HbW/src/data/demo
286s Run 'pymol -c /tmp/autopkgtest.uALzAW/build.HbW/src/data/demo/cgo03.py'...
290s autopkgtest [21:09:57]: test command2: -----------------------]
294s autopkgtest [21:10:01]: test command2:  - - - - - - - - - - results - - - - - - - - - -
294s command2             PASS (superficial)
298s autopkgtest [21:10:05]: test command3: preparing testbed
300s Reading package lists...
300s Building dependency tree...
300s Reading state information...
301s Starting pkgProblemResolver with broken count: 0
301s Starting 2 pkgProblemResolver with broken count: 0
301s Done
302s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
310s autopkgtest [21:10:17]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)"
310s autopkgtest [21:10:17]: test command3: [-----------------------
312s Search pymol scripts in /usr/share/pymol/examples...
312s Processing new directory /usr/share/pymol/examples
312s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
312s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
312s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
312s Skip /usr/share/pymol/examples/cookbook/contact.pml
312s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
312s Skip /usr/share/pymol/examples/cookbook/packing.pml
312s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
312s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
312s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
312s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
312s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
312s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
312s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
313s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
316s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
319s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
319s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
319s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
321s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
321s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
321s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
322s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
322s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
325s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
325s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
325s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
326s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
329s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
329s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
329s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
330s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
330s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
330s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
334s Skip /usr/share/pymol/examples/devel/importing.py
334s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
334s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
335s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
335s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
337s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
337s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
337s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
338s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
338s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
338s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
338s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
338s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
339s Skip /usr/share/pymol/examples/devel/tkwindow.py
339s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
339s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
339s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
339s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
339s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
339s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
339s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
340s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
340s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
340s Processing new directory /usr/share/pymol/examples/chempy
340s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
340s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
340s Processing new directory /usr/share/pymol/examples/cookbook
340s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
340s Skip /usr/share/pymol/examples/cookbook/contact.pml
340s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
340s Skip /usr/share/pymol/examples/cookbook/packing.pml
340s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
340s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
340s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
340s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
340s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
341s Processing new directory /usr/share/pymol/examples/devel
341s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
341s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
341s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
344s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
348s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
348s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
348s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
349s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
350s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
350s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
350s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
350s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
353s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
354s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
354s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
354s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
357s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
358s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
358s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
358s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
358s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
359s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
362s Skip /usr/share/pymol/examples/devel/importing.py
362s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
362s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
363s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
363s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
365s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
365s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
366s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
366s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
366s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
366s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
366s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
367s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
367s Skip /usr/share/pymol/examples/devel/tkwindow.py
367s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
367s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
367s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
367s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
367s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
367s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
368s Processing new directory /usr/share/pymol/examples/launching
368s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
368s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
368s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
368s autopkgtest [21:11:15]: test command3: -----------------------]
372s command3             PASS (superficial)
372s autopkgtest [21:11:19]: test command3:  - - - - - - - - - - results - - - - - - - - - -
376s autopkgtest [21:11:23]: test command4: preparing testbed
378s Reading package lists...
379s Building dependency tree...
379s Reading state information...
379s Starting pkgProblemResolver with broken count: 0
379s Starting 2 pkgProblemResolver with broken count: 0
379s Done
380s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
388s autopkgtest [21:11:35]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray
388s autopkgtest [21:11:35]: test command4: [-----------------------
390s Search pymol scripts in /usr/share/pymol/examples/cookbook...
390s Processing new directory /usr/share/pymol/examples/cookbook
390s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'...
391s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'...
392s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
392s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'...
393s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'...
410s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'...
412s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'...
412s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'...
414s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'...
416s autopkgtest [21:12:03]: test command4: -----------------------]
420s autopkgtest [21:12:07]: test command4:  - - - - - - - - - - results - - - - - - - - - -
420s command4             PASS (superficial)
423s autopkgtest [21:12:10]: test command5: preparing testbed
425s Reading package lists...
426s Building dependency tree...
426s Reading state information...
426s Starting pkgProblemResolver with broken count: 0
426s Starting 2 pkgProblemResolver with broken count: 0
426s Done
427s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
434s autopkgtest [21:12:21]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml)
434s autopkgtest [21:12:21]: test command5: [-----------------------
437s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
437s  Copyright (c) Schrodinger, LLC.
437s  All Rights Reserved.
437s  
437s     Created by Warren L. DeLano, Ph.D. 
437s  
437s     PyMOL is user-supported open-source software.  Although some versions
437s     are freely available, PyMOL is not in the public domain.
437s  
437s     If PyMOL is helpful in your work or study, then please volunteer 
437s     support for our ongoing efforts to create open and affordable scientific
437s     software by purchasing a PyMOL Maintenance and/or Support subscription.
437s 
437s     More information can be found at "http://www.pymol.org".
437s  
437s     Enter "help" for a list of commands.
437s     Enter "help <command-name>" for information on a specific command.
437s 
437s  Hit ESC anytime to toggle between text and graphics.
437s 
437s  Setting: wizard_prompt_mode set to 3.
437s  Detected 8 CPU cores.  Enabled multithreaded rendering.
437s PyMOL>from pymol.wizard.annotation import load_annotated_sdf
437s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf)
437s PyMOL>wizard annotation
437s PyMOL>set wizard_prompt_mode,3
437s PyMOL>load_annotated_sdf demo.sdf
437s HBA ['[1, 25, 26, 34]\n']
437s HBD ['[20]\n']
437s ACD_NUMBER ['MFCD02681585\n']
437s SCORE ['-222.044\n']
437s MOLID ['MFCD02681585\n']
437s HBA ['[1, 21]\n']
437s HBD ['[]\n']
437s ACD_NUMBER ['MFCD01567969\n']
437s SCORE ['-219.984\n']
437s MOLID ['MFCD01567969\n']
437s HBA ['[1, 24]\n']
437s HBD ['[10, 22]\n']
437s ACD_NUMBER ['MFCD00023789\n']
437s SCORE ['-219.911\n']
437s MOLID ['MFCD00023789\n']
437s HBA ['[1, 11]\n']
437s HBD ['[3]\n']
437s ACD_NUMBER ['MFCD02579443\n']
437s SCORE ['-219.769\n']
437s MOLID ['MFCD02579443\n']
437s HBA ['[1, 11]\n']
437s HBD ['[9]\n']
437s ACD_NUMBER ['MFCD02579410\n']
437s SCORE ['-214.809\n']
437s MOLID ['MFCD02579410\n']
437s HBA ['[1, 20, 22, 27, 32]\n']
437s HBD ['[10, 20]\n']
437s ACD_NUMBER ['MFCD02579135\n']
437s SCORE ['-213.630\n']
437s MOLID ['MFCD02579135\n']
437s HBA ['[1, 11, 14, 21]\n']
437s HBD ['[]\n']
437s ACD_NUMBER ['MFCD02681468\n']
437s SCORE ['-213.462\n']
437s MOLID ['MFCD02681468\n']
437s HBA ['[1, 13, 14, 29]\n']
437s HBD ['[]\n']
437s ACD_NUMBER ['MFCD00141070\n']
437s SCORE ['-213.240\n']
437s MOLID ['MFCD00141070\n']
437s HBA ['[1, 8]\n']
437s HBD ['[]\n']
437s ACD_NUMBER ['MFCD02983625\n']
437s SCORE ['-211.422\n']
437s MOLID ['MFCD02983625\n']
437s HBA ['[1, 11]\n']
437s HBD ['[3, 12]\n']
437s ACD_NUMBER ['MFCD00115818\n']
437s SCORE ['-210.482\n']
437s MOLID ['MFCD00115818\n']
437s autopkgtest [21:12:24]: test command5: -----------------------]
441s autopkgtest [21:12:28]: test command5:  - - - - - - - - - - results - - - - - - - - - -
441s command5             PASS (superficial)
444s autopkgtest [21:12:31]: @@@@@@@@@@@@@@@@@@@@ summary
444s command1             PASS (superficial)
444s command2             PASS (superficial)
444s command3             PASS (superficial)
444s command4             PASS (superficial)
444s command5             PASS (superficial)