0s autopkgtest [17:10:46]: starting date and time: 2025-01-03 17:10:46+0000
  0s autopkgtest [17:10:46]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:10:46]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g843g4_q/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.13.1-1~exp2' -- lxd -r lxd-armhf-10.145.243.21 lxd-armhf-10.145.243.21:autopkgtest/ubuntu/plucky/armhf
 52s autopkgtest [17:11:38]: testbed dpkg architecture: armhf
 54s autopkgtest [17:11:40]: testbed apt version: 2.9.14ubuntu1
 59s autopkgtest [17:11:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 61s autopkgtest [17:11:47]: testbed release detected to be: None
 70s autopkgtest [17:11:56]: updating testbed package index (apt update)
 72s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 72s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [213 kB]
 72s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 72s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 72s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [11.5 kB]
 72s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [780 kB]
 72s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [73.5 kB]
 72s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B]
 72s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [77.1 kB]
 72s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [756 B]
 72s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [736 kB]
 72s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [5440 B]
 72s Get:13 http://ftpmaster.internal/ubuntu plucky/restricted Sources [15.2 kB]
 72s Get:14 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [297 kB]
 72s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [20.9 MB]
 73s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1375 kB]
 73s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1356 kB]
 73s Get:18 http://ftpmaster.internal/ubuntu plucky/restricted armhf Packages [2544 B]
 73s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.0 MB]
 73s Get:20 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [173 kB]
 77s Fetched 41.1 MB in 5s (8152 kB/s)
 78s Reading package lists...
 85s autopkgtest [17:12:11]: upgrading testbed (apt dist-upgrade and autopurge)
 88s Reading package lists...
 88s Building dependency tree...
 88s Reading state information...
 88s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 89s Starting 2 pkgProblemResolver with broken count: 0
 89s Done
 89s Entering ResolveByKeep
 90s 
 90s The following packages were automatically installed and are no longer required:
 90s   libassuan0 libnsl2 libpython3.12-minimal libpython3.12-stdlib python3.12
 90s   python3.12-minimal
 90s Use 'apt autoremove' to remove them.
 90s The following NEW packages will be installed:
 90s   libpython3.13-minimal libpython3.13-stdlib openssl-provider-legacy
 90s   python3-bcrypt python3.13 python3.13-minimal
 90s The following packages will be upgraded:
 90s   apport apport-core-dump-handler appstream apt apt-utils base-passwd bash
 90s   bash-completion binutils binutils-arm-linux-gnueabihf binutils-common
 90s   bsdextrautils bsdutils curl dirmngr dracut-install eject ethtool fdisk fwupd
 90s   gcc-14-base gettext-base gir1.2-girepository-2.0 gir1.2-glib-2.0 gnupg
 90s   gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv
 90s   groff-base iputils-ping iputils-tracepath keyboxd libappstream5
 90s   libapt-pkg6.0t64 libatomic1 libbinutils libblkid1 libbpf1 libc-bin libc6
 90s   libcap-ng0 libctf-nobfd0 libctf0 libcurl3t64-gnutls libcurl4t64
 90s   libdebconfclient0 libfdisk1 libfribidi0 libftdi1-2 libfwupd3 libgcc-s1
 90s   libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-bin libglib2.0-data
 90s   libgpg-error-l10n libgpg-error0 libgstreamer1.0-0 libjson-glib-1.0-0
 90s   libjson-glib-1.0-common libmount1 libnewt0.52 libnpth0t64 libnss-systemd
 90s   libnss3 libpam-systemd libpng16-16t64 libpython3-stdlib
 90s   libpython3.12-minimal libpython3.12-stdlib libqmi-glib5 libqmi-proxy
 90s   libreadline8t64 libsframe1 libsmartcols1 libssl3t64 libstdc++6
 90s   libsystemd-shared libsystemd0 libtraceevent1 libtraceevent1-plugin libudev1
 90s   libunistring5 libuuid1 libwrap0 libxkbcommon0 libxml2 libyaml-0-2 locales
 90s   make mount openssl pci.ids publicsuffix python-apt-common python3
 90s   python3-apport python3-apt python3-attr python3-cryptography python3-gdbm
 90s   python3-jinja2 python3-json-pointer python3-jsonpatch python3-minimal
 90s   python3-newt python3-openssl python3-pkg-resources python3-problem-report
 90s   python3-rich python3-setuptools python3-software-properties python3-wadllib
 90s   python3.12 python3.12-gdbm python3.12-minimal python3.13-gdbm
 90s   readline-common rsync software-properties-common systemd systemd-cryptsetup
 90s   systemd-resolved systemd-sysv systemd-timesyncd tar tzdata ucf udev usb.ids
 90s   util-linux uuid-runtime whiptail xauth
 91s 139 upgraded, 6 newly installed, 0 to remove and 0 not upgraded.
 91s Need to get 64.0 MB of archives.
 91s After this operation, 28.2 MB of additional disk space will be used.
 91s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf bash armhf 5.2.37-1ubuntu1 [677 kB]
 91s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf bsdutils armhf 1:2.40.2-1ubuntu2 [108 kB]
 91s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf tar armhf 1.35+dfsg-3.1 [240 kB]
 91s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-12ubuntu1 [7892 B]
 91s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-12ubuntu1 [52.6 kB]
 91s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-12ubuntu1 [40.6 kB]
 91s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-12ubuntu1 [711 kB]
 91s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libc6 armhf 2.40-4ubuntu1 [2866 kB]
 91s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf openssl-provider-legacy armhf 3.4.0-1ubuntu2 [29.4 kB]
 91s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libssl3t64 armhf 3.4.0-1ubuntu2 [1756 kB]
 91s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 257-2ubuntu1 [41.2 kB]
 91s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 257-2ubuntu1 [307 kB]
 91s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 257-2ubuntu1 [122 kB]
 91s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf eject armhf 2.40.2-1ubuntu2 [62.3 kB]
 91s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf bsdextrautils armhf 2.40.2-1ubuntu2 [99.4 kB]
 91s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf fdisk armhf 2.40.2-1ubuntu2 [155 kB]
 91s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libblkid1 armhf 2.40.2-1ubuntu2 [167 kB]
 91s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libmount1 armhf 2.40.2-1ubuntu2 [189 kB]
 91s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libsmartcols1 armhf 2.40.2-1ubuntu2 [135 kB]
 91s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libuuid1 armhf 2.40.2-1ubuntu2 [39.5 kB]
 91s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf util-linux armhf 2.40.2-1ubuntu2 [1195 kB]
 91s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf uuid-runtime armhf 2.40.2-1ubuntu2 [62.7 kB]
 91s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libfdisk1 armhf 2.40.2-1ubuntu2 [211 kB]
 91s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf mount armhf 2.40.2-1ubuntu2 [156 kB]
 91s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf readline-common all 8.2-6 [56.5 kB]
 91s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libreadline8t64 armhf 8.2-6 [131 kB]
 91s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 257-2ubuntu1 [160 kB]
 91s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 257-2ubuntu1 [3489 kB]
 92s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 257-2ubuntu1 [1974 kB]
 92s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 257-2ubuntu1 [11.8 kB]
 92s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 257-2ubuntu1 [233 kB]
 92s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 257-2ubuntu1 [2156 kB]
 92s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 257-2ubuntu1 [190 kB]
 92s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 257-2ubuntu1 [483 kB]
 92s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libdebconfclient0 armhf 0.274ubuntu1 [11.2 kB]
 92s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.6 [53.4 kB]
 92s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libc-bin armhf 2.40-4ubuntu1 [542 kB]
 92s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libapt-pkg6.0t64 armhf 2.9.18 [1085 kB]
 92s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf apt armhf 2.9.18 [1349 kB]
 92s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf apt-utils armhf 2.9.18 [216 kB]
 92s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libgpg-error-l10n all 1.51-3 [8800 B]
 92s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libgpg-error0 armhf 1.51-3 [64.8 kB]
 92s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libnpth0t64 armhf 1.8-2 [7572 B]
 92s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf gpg-wks-client armhf 2.4.4-2ubuntu21 [88.9 kB]
 92s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf dirmngr armhf 2.4.4-2ubuntu21 [351 kB]
 92s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf gpgsm armhf 2.4.4-2ubuntu21 [246 kB]
 92s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf gnupg-utils armhf 2.4.4-2ubuntu21 [160 kB]
 92s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf gpg-agent armhf 2.4.4-2ubuntu21 [238 kB]
 92s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf gpg armhf 2.4.4-2ubuntu21 [536 kB]
 92s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf gpgconf armhf 2.4.4-2ubuntu21 [118 kB]
 92s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf gnupg all 2.4.4-2ubuntu21 [359 kB]
 92s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf keyboxd armhf 2.4.4-2ubuntu21 [113 kB]
 92s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf gpgv armhf 2.4.4-2ubuntu21 [228 kB]
 92s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.1-2 [868 kB]
 92s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.1-2 [2036 kB]
 92s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cryptography armhf 43.0.0-1 [925 kB]
 92s Get:57 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.13.1-1~exp2 [27.6 kB]
 92s Get:58 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.13.1-1~exp2 [23.9 kB]
 92s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf python3-bcrypt armhf 4.2.0-2.1 [239 kB]
 92s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-4ubuntu1 [196 kB]
 92s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.1-2 [1970 kB]
 92s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.1-2 [729 kB]
 92s Get:63 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.13.1-1~exp2 [10.2 kB]
 92s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.8-3 [667 kB]
 92s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.8-3 [1939 kB]
 92s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.8-3 [2029 kB]
 93s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.8-3 [825 kB]
 93s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf rsync armhf 3.3.0+ds1-2 [422 kB]
 93s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf python-apt-common all 2.9.6build1 [21.0 kB]
 93s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apt armhf 2.9.6build1 [174 kB]
 93s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.31.0-0ubuntu2 [25.3 kB]
 93s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.31.0-0ubuntu2 [93.1 kB]
 93s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libglib2.0-data all 2.82.4-1 [52.2 kB]
 93s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libglib2.0-bin armhf 2.82.4-1 [93.0 kB]
 93s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf gir1.2-girepository-2.0 armhf 1.82.0-3 [25.3 kB]
 93s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf gir1.2-glib-2.0 armhf 2.82.4-1 [182 kB]
 93s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libglib2.0-0t64 armhf 2.82.4-1 [1421 kB]
 93s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libgirepository-1.0-1 armhf 1.82.0-3 [108 kB]
 93s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.31.0-0ubuntu2 [18.2 kB]
 93s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.31.0-0ubuntu2 [82.9 kB]
 93s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libcap-ng0 armhf 0.8.5-4 [13.8 kB]
 93s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libunistring5 armhf 1.3-1 [583 kB]
 93s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf iputils-ping armhf 3:20240905-1ubuntu1 [45.0 kB]
 93s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-2 [158 kB]
 93s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libfribidi0 armhf 1.0.16-1 [24.3 kB]
 93s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-4ubuntu1 [20.1 kB]
 93s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-4ubuntu1 [39.7 kB]
 93s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2build1 [599 kB]
 93s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf libyaml-0-2 armhf 0.2.5-2 [45.3 kB]
 93s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf locales all 2.40-4ubuntu1 [4224 kB]
 93s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf openssl armhf 3.4.0-1ubuntu2 [1159 kB]
 93s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf python3-rich all 13.9.4-1 [190 kB]
 93s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf ucf all 3.0046 [41.9 kB]
 93s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-4ubuntu1 [17.3 kB]
 93s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.16.0-1 [214 kB]
 93s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf ethtool armhf 1:6.11-1 [222 kB]
 93s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf gettext-base armhf 0.22.5-3 [40.7 kB]
 93s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf groff-base armhf 1.23.0-7 [949 kB]
 93s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf iputils-tracepath armhf 3:20240905-1ubuntu1 [13.3 kB]
 93s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-3 [169 kB]
 93s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.4-2 [19.0 kB]
 93s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.4-2 [53.8 kB]
 94s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libxkbcommon0 armhf 1.7.0-2 [113 kB]
 94s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.11.25-1 [282 kB]
 94s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf publicsuffix all 20241206.1516-0.1 [135 kB]
 94s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.1-2 [29.8 kB]
 94s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.8-3 [28.9 kB]
 94s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gdbm armhf 3.13.1-1 [8668 B]
 94s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf usb.ids all 2024.12.04-1 [223 kB]
 94s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf xauth armhf 1:1.1.2-1.1 [23.0 kB]
 94s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libcurl3t64-gnutls armhf 8.11.1-1ubuntu1 [333 kB]
 94s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libappstream5 armhf 1.0.4-1 [211 kB]
 94s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf appstream armhf 1.0.4-1 [67.3 kB]
 94s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libctf0 armhf 2.43.50.20241230-1ubuntu1 [74.5 kB]
 94s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libctf-nobfd0 armhf 2.43.50.20241230-1ubuntu1 [77.3 kB]
 94s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf binutils-arm-linux-gnueabihf armhf 2.43.50.20241230-1ubuntu1 [2960 kB]
 94s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libbinutils armhf 2.43.50.20241230-1ubuntu1 [403 kB]
 94s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf binutils armhf 2.43.50.20241230-1ubuntu1 [3086 B]
 94s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf binutils-common armhf 2.43.50.20241230-1ubuntu1 [222 kB]
 94s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libsframe1 armhf 2.43.50.20241230-1ubuntu1 [12.1 kB]
 94s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf curl armhf 8.11.1-1ubuntu1 [244 kB]
 94s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libcurl4t64 armhf 8.11.1-1ubuntu1 [337 kB]
 94s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf dracut-install armhf 105-2ubuntu5 [37.3 kB]
 94s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.6+ds-1 [5636 B]
 94s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.6+ds-1 [59.5 kB]
 94s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 2.0.3-3 [5028 kB]
 94s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd3 armhf 2.0.3-3 [121 kB]
 94s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf libqmi-proxy armhf 1.35.6-1 [5878 B]
 94s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf libqmi-glib5 armhf 1.35.6-1 [928 kB]
 94s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf gnupg-l10n all 2.4.4-2ubuntu21 [66.3 kB]
 94s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-8 [26.3 kB]
 94s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf libgstreamer1.0-0 armhf 1.24.10-2 [1109 kB]
 94s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf libnss3 armhf 2:3.106-1ubuntu1 [1321 kB]
 94s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf libwrap0 armhf 7.6.q-34 [45.7 kB]
 94s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf make armhf 4.4.1-1 [180 kB]
 94s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-attr all 24.2.0-1 [50.2 kB]
 94s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.3-1.1 [108 kB]
 94s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-3 [8444 B]
 94s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-5 [12.3 kB]
 94s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-openssl all 24.3.0-1 [45.8 kB]
 94s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pkg-resources all 75.6.0-1 [144 kB]
 94s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf python3-setuptools all 75.6.0-1 [645 kB]
 94s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf software-properties-common all 0.108 [16.5 kB]
 94s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf python3-software-properties all 0.108 [30.9 kB]
 95s Get:145 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-2 [36.2 kB]
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110s Preparing to unpack .../53-python3-attr_24.2.0-1_all.deb ...
110s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
110s   for fn in glob1(directory, "%s.*" % fname):
110s Unpacking python3-attr (24.2.0-1) over (23.2.0-2) ...
110s Preparing to unpack .../54-python3-jinja2_3.1.3-1.1_all.deb ...
110s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
110s   for fn in glob1(directory, "%s.*" % fname):
110s Unpacking python3-jinja2 (3.1.3-1.1) over (3.1.3-1ubuntu1) ...
110s Preparing to unpack .../55-python3-json-pointer_2.4-3_all.deb ...
110s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
110s   for fn in glob1(directory, "%s.*" % fname):
110s Unpacking python3-json-pointer (2.4-3) over (2.4-2) ...
110s Preparing to unpack .../56-python3-jsonpatch_1.32-5_all.deb ...
110s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
110s   for fn in glob1(directory, "%s.*" % fname):
110s Unpacking python3-jsonpatch (1.32-5) over (1.32-4) ...
110s Preparing to unpack .../57-python3-openssl_24.3.0-1_all.deb ...
110s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
110s   for fn in glob1(directory, "%s.*" % fname):
110s Unpacking python3-openssl (24.3.0-1) over (24.2.1-1) ...
110s Preparing to unpack .../58-python3-pkg-resources_75.6.0-1_all.deb ...
110s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
110s   for fn in glob1(directory, "%s.*" % fname):
111s Unpacking python3-pkg-resources (75.6.0-1) over (75.2.0-1) ...
111s Preparing to unpack .../59-python3-setuptools_75.6.0-1_all.deb ...
111s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
111s   for fn in glob1(directory, "%s.*" % fname):
111s Unpacking python3-setuptools (75.6.0-1) over (75.2.0-1) ...
111s Preparing to unpack .../60-software-properties-common_0.108_all.deb ...
111s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
111s   for fn in glob1(directory, "%s.*" % fname):
111s Unpacking software-properties-common (0.108) over (0.105) ...
111s Preparing to unpack .../61-python3-software-properties_0.108_all.deb ...
111s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
111s   for fn in glob1(directory, "%s.*" % fname):
111s Unpacking python3-software-properties (0.108) over (0.105) ...
111s Preparing to unpack .../62-python3-wadllib_2.0.0-2_all.deb ...
111s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
111s   for fn in glob1(directory, "%s.*" % fname):
111s Unpacking python3-wadllib (2.0.0-2) over (2.0.0-1) ...
111s Setting up systemd-sysv (257-2ubuntu1) ...
111s Setting up pci.ids (0.0~2024.11.25-1) ...
111s Setting up libnewt0.52:armhf (0.52.24-4ubuntu1) ...
111s Setting up apt-utils (2.9.18) ...
111s Setting up bsdextrautils (2.40.2-1ubuntu2) ...
111s Setting up libcurl4t64:armhf (8.11.1-1ubuntu1) ...
111s Setting up libyaml-0-2:armhf (0.2.5-2) ...
111s Setting up python3.12-gdbm (3.12.8-3) ...
111s Setting up libpython3.12-minimal:armhf (3.12.8-3) ...
111s Setting up binutils-common:armhf (2.43.50.20241230-1ubuntu1) ...
111s Setting up libcurl3t64-gnutls:armhf (8.11.1-1ubuntu1) ...
111s Setting up libctf-nobfd0:armhf (2.43.50.20241230-1ubuntu1) ...
111s Setting up gettext-base (0.22.5-3) ...
111s Setting up libnss-systemd:armhf (257-2ubuntu1) ...
111s Setting up libnss3:armhf (2:3.106-1ubuntu1) ...
111s Setting up locales (2.40-4ubuntu1) ...
112s Generating locales (this might take a while)...
114s   en_US.UTF-8... done
114s Generation complete.
114s Setting up libsframe1:armhf (2.43.50.20241230-1ubuntu1) ...
114s Setting up tzdata (2024b-4ubuntu1) ...
114s 
114s Current default time zone: 'Etc/UTC'
114s Local time is now:      Fri Jan  3 17:12:40 UTC 2025.
114s Universal Time is now:  Fri Jan  3 17:12:40 UTC 2025.
114s Run 'dpkg-reconfigure tzdata' if you wish to change it.
114s 
114s Setting up eject (2.40.2-1ubuntu2) ...
114s Setting up libftdi1-2:armhf (1.5-8) ...
114s Setting up libglib2.0-data (2.82.4-1) ...
114s Setting up systemd-cryptsetup (257-2ubuntu1) ...
114s Setting up libwrap0:armhf (7.6.q-34) ...
114s Setting up make (4.4.1-1) ...
114s Setting up gnupg-l10n (2.4.4-2ubuntu21) ...
114s Setting up bash-completion (1:2.16.0-1) ...
114s Setting up libfribidi0:armhf (1.0.16-1) ...
114s Setting up libpng16-16t64:armhf (1.6.44-3) ...
114s Setting up systemd-timesyncd (257-2ubuntu1) ...
115s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it.
115s Setting up libatomic1:armhf (14.2.0-12ubuntu1) ...
115s Setting up udev (257-2ubuntu1) ...
115s Setting up usb.ids (2024.12.04-1) ...
115s Setting up ucf (3.0046) ...
115s Installing new version of config file /etc/ucf.conf ...
115s Setting up libfdisk1:armhf (2.40.2-1ubuntu2) ...
115s Setting up whiptail (0.52.24-4ubuntu1) ...
115s Setting up python-apt-common (2.9.6build1) ...
115s Setting up dracut-install (105-2ubuntu5) ...
115s Setting up uuid-runtime (2.40.2-1ubuntu2) ...
116s uuidd.service is a disabled or a static unit not running, not starting it.
116s Setting up xauth (1:1.1.2-1.1) ...
116s Setting up groff-base (1.23.0-7) ...
116s Setting up libtraceevent1:armhf (1:1.8.4-2) ...
116s Setting up libpam-systemd:armhf (257-2ubuntu1) ...
117s Setting up libjson-glib-1.0-common (1.10.6+ds-1) ...
117s Setting up curl (8.11.1-1ubuntu1) ...
117s Setting up libbinutils:armhf (2.43.50.20241230-1ubuntu1) ...
117s Setting up openssl (3.4.0-1ubuntu2) ...
117s Installing new version of config file /etc/ssl/openssl.cnf ...
117s Setting up libgpg-error-l10n (1.51-3) ...
117s Setting up iputils-ping (3:20240905-1ubuntu1) ...
117s Setting up readline-common (8.2-6) ...
117s Setting up publicsuffix (20241206.1516-0.1) ...
117s Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2build1) ...
117s Setting up libbpf1:armhf (1:1.5.0-2) ...
117s Setting up iputils-tracepath (3:20240905-1ubuntu1) ...
117s Setting up rsync (3.3.0+ds1-2) ...
117s rsync.service is a disabled or a static unit not running, not starting it.
117s Setting up python3.13-gdbm (3.13.1-2) ...
117s Setting up ethtool (1:6.11-1) ...
117s Setting up gnupg-utils (2.4.4-2ubuntu21) ...
117s Setting up systemd-resolved (257-2ubuntu1) ...
118s Setting up libxkbcommon0:armhf (1.7.0-2) ...
118s Setting up libctf0:armhf (2.43.50.20241230-1ubuntu1) ...
118s Setting up python3.12-minimal (3.12.8-3) ...
119s Setting up libglib2.0-0t64:armhf (2.82.4-1) ...
119s No schema files found: doing nothing.
119s Setting up gir1.2-glib-2.0:armhf (2.82.4-1) ...
119s Setting up libreadline8t64:armhf (8.2-6) ...
119s Setting up libtraceevent1-plugin:armhf (1:1.8.4-2) ...
119s Setting up gpgconf (2.4.4-2ubuntu21) ...
119s Setting up libgirepository-1.0-1:armhf (1.82.0-3) ...
119s Setting up binutils-arm-linux-gnueabihf (2.43.50.20241230-1ubuntu1) ...
119s Setting up libpython3.13-stdlib:armhf (3.13.1-2) ...
119s Setting up gpg (2.4.4-2ubuntu21) ...
119s Setting up libgstreamer1.0-0:armhf (1.24.10-2) ...
119s Setcap worked! gst-ptp-helper is not suid!
119s Setting up libpython3-stdlib:armhf (3.13.1-1~exp2) ...
119s Setting up gpg-agent (2.4.4-2ubuntu21) ...
119s Setting up libpython3.12-stdlib:armhf (3.12.8-3) ...
119s Setting up python3.13 (3.13.1-2) ...
121s Setting up python3.12 (3.12.8-3) ...
122s Setting up gpgsm (2.4.4-2ubuntu21) ...
122s Setting up libglib2.0-bin (2.82.4-1) ...
122s Setting up libappstream5:armhf (1.0.4-1) ...
122s Setting up libqmi-glib5:armhf (1.35.6-1) ...
122s Setting up python3 (3.13.1-1~exp2) ...
122s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
122s   for fn in glob1(directory, "%s.*" % fname):
122s Setting up binutils (2.43.50.20241230-1ubuntu1) ...
122s Setting up python3-newt:armhf (0.52.24-4ubuntu1) ...
122s Setting up fdisk (2.40.2-1ubuntu2) ...
122s Setting up libjson-glib-1.0-0:armhf (1.10.6+ds-1) ...
122s Setting up dirmngr (2.4.4-2ubuntu21) ...
123s Setting up python3-jinja2 (3.1.3-1.1) ...
123s Setting up appstream (1.0.4-1) ...
123s ✔ Metadata cache was updated successfully.
123s Setting up gir1.2-girepository-2.0:armhf (1.82.0-3) ...
123s Setting up python3-wadllib (2.0.0-2) ...
123s Setting up keyboxd (2.4.4-2ubuntu21) ...
123s Setting up python3-json-pointer (2.4-3) ...
123s Setting up gnupg (2.4.4-2ubuntu21) ...
123s Setting up python3-pkg-resources (75.6.0-1) ...
124s Setting up python3-attr (24.2.0-1) ...
124s Setting up python3-setuptools (75.6.0-1) ...
126s Setting up gpg-wks-client (2.4.4-2ubuntu21) ...
126s Setting up python3-rich (13.9.4-1) ...
126s Setting up python3-gdbm:armhf (3.13.1-1) ...
126s Setting up python3-problem-report (2.31.0-0ubuntu2) ...
127s Setting up python3-apt (2.9.6build1) ...
127s Setting up python3-jsonpatch (1.32-5) ...
127s Setting up python3-bcrypt (4.2.0-2.1) ...
127s Setting up libqmi-proxy (1.35.6-1) ...
127s Setting up libfwupd3:armhf (2.0.3-3) ...
127s Setting up python3-apport (2.31.0-0ubuntu2) ...
127s Setting up python3-software-properties (0.108) ...
128s Setting up python3-cryptography (43.0.0-1) ...
128s Setting up fwupd (2.0.3-3) ...
129s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
129s fwupd.service is a disabled or a static unit not running, not starting it.
129s Setting up python3-openssl (24.3.0-1) ...
129s Setting up software-properties-common (0.108) ...
129s Setting up apport-core-dump-handler (2.31.0-0ubuntu2) ...
130s Setting up apport (2.31.0-0ubuntu2) ...
130s apport-autoreport.service is a disabled or a static unit not running, not starting it.
130s Processing triggers for dbus (1.14.10-4ubuntu5) ...
130s Processing triggers for shared-mime-info (2.4-5) ...
131s Warning: program compiled against libxml 212 using older 209
131s Processing triggers for debianutils (5.21) ...
131s Processing triggers for install-info (7.1.1-1) ...
131s Processing triggers for initramfs-tools (0.142ubuntu35) ...
131s Processing triggers for libc-bin (2.40-4ubuntu1) ...
131s Processing triggers for systemd (257-2ubuntu1) ...
131s Processing triggers for man-db (2.13.0-1) ...
136s Reading package lists...
137s Building dependency tree...
137s Reading state information...
137s Starting pkgProblemResolver with broken count: 0
137s Starting 2 pkgProblemResolver with broken count: 0
137s Done
138s The following packages will be REMOVED:
138s   libassuan0* libnsl2* libpython3.12-minimal* libpython3.12-stdlib*
138s   python3.12* python3.12-minimal*
139s 0 upgraded, 0 newly installed, 6 to remove and 0 not upgraded.
139s After this operation, 20.0 MB disk space will be freed.
139s (Reading database ... 
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(Reading database ... 60740 files and directories currently installed.)
139s Removing libassuan0:armhf (2.5.6-1build1) ...
139s Removing python3.12 (3.12.8-3) ...
139s Removing libpython3.12-stdlib:armhf (3.12.8-3) ...
139s Removing libnsl2:armhf (1.3.0-3build3) ...
139s Removing python3.12-minimal (3.12.8-3) ...
139s /usr/bin/py3clean:125: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead.
139s   for fn in glob1(directory, "%s.%s.py[co]" % (fname, magic_tag)):
139s Removing libpython3.12-minimal:armhf (3.12.8-3) ...
140s Processing triggers for systemd (257-2ubuntu1) ...
140s Processing triggers for man-db (2.13.0-1) ...
140s Processing triggers for libc-bin (2.40-4ubuntu1) ...
140s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 60020 files and directories currently installed.)
140s Purging configuration files for python3.12-minimal (3.12.8-3) ...
140s Purging configuration files for libpython3.12-minimal:armhf (3.12.8-3) ...
142s autopkgtest [17:13:08]: rebooting testbed after setup commands that affected boot
188s autopkgtest [17:13:54]: testbed running kernel: Linux 6.8.0-49-generic #49~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov  6 18:12:14 UTC 2
218s autopkgtest [17:14:24]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol
242s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (dsc) [2304 B]
242s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (tar) [22.0 MB]
242s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1build1 (diff) [57.7 kB]
242s gpgv: Signature made Thu Nov 14 18:31:58 2024 UTC
242s gpgv:                using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37
242s gpgv: Can't check signature: No public key
242s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1build1.dsc: no acceptable signature found
243s autopkgtest [17:14:49]: testing package pymol version 3.0.0+dfsg-1build1
246s autopkgtest [17:14:52]: build not needed
252s autopkgtest [17:14:58]: test command1: preparing testbed
255s Reading package lists...
255s Building dependency tree...
255s Reading state information...
255s Starting pkgProblemResolver with broken count: 0
255s Starting 2 pkgProblemResolver with broken count: 0
255s Done
256s The following NEW packages will be installed:
256s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0
256s   libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64
256s   libdouble-conversion3 libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1
256s   libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa
256s   libgles2 libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1
256s   libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libice6
256s   libinput-bin libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libllvm19
256s   libmd4c0 libmtdev1t64 libnetcdf19t64 libnsl2 libopengl0 libpcre2-16-0
256s   libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libqt5core5t64
256s   libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64
256s   libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64
256s   libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common
256s   libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0
256s   libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1
256s   libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0
256s   libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0
256s   libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0
256s   libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data
256s   python3-numpy python3-opengl python3-pymol python3-pyqt5
256s   python3-pyqt5.qtopengl python3-pyqt5.sip x11-common
257s 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded.
257s Need to get 71.1 MB/73.9 MB of archives.
257s After this operation, 282 MB of additional disk space will be used.
257s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libnsl2 armhf 1.3.0-3build3 [36.5 kB]
257s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB]
257s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
257s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
257s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB]
257s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB]
257s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-1.1ubuntu2 [189 kB]
257s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB]
257s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common-data armhf 0.8-14ubuntu1 [30.5 kB]
257s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common3 armhf 0.8-14ubuntu1 [19.5 kB]
257s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-client3 armhf 0.8-14ubuntu1 [23.6 kB]
257s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-4 [126 kB]
257s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libcups2t64 armhf 2.4.11-0ubuntu2 [243 kB]
257s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf libdouble-conversion3 armhf 3.3.0-1build1 [38.6 kB]
257s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-radeon1 armhf 2.4.123-1 [18.1 kB]
257s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-server0 armhf 1.23.0-1 [29.4 kB]
257s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB]
257s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libglapi-mesa armhf 24.2.8-1ubuntu1 [49.5 kB]
257s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libllvm19 armhf 1:19.1.6-1ubuntu1 [27.8 MB]
259s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B]
259s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-dri2-0 armhf 1.17.0-2 [6868 B]
259s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B]
259s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B]
259s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B]
259s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB]
259s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libxshmfence1 armhf 1.3-1build5 [4464 B]
259s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf mesa-libgallium armhf 24.2.8-1ubuntu1 [7907 kB]
259s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libgbm1 armhf 24.2.8-1ubuntu1 [28.2 kB]
259s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-client0 armhf 1.23.0-1 [22.7 kB]
259s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B]
259s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libegl-mesa0 armhf 24.2.8-1ubuntu1 [106 kB]
259s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-12ubuntu1 [311 kB]
259s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libvulkan1 armhf 1.3.296.0-1 [114 kB]
259s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1-mesa-dri armhf 24.2.8-1ubuntu1 [30.9 kB]
259s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB]
259s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB]
259s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libxfixes3 armhf 1:6.0.0-2build1 [9038 B]
259s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B]
259s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libglx-mesa0 armhf 24.2.8-1ubuntu1 [131 kB]
259s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB]
259s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1 armhf 1.7.0-1build1 [105 kB]
259s Get:42 http://ftpmaster.internal/ubuntu plucky/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB]
259s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-12ubuntu1 [125 kB]
259s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB]
259s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.1.0-1 [464 kB]
259s Get:46 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B]
259s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-5ubuntu1 [1266 kB]
259s Get:48 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-5ubuntu1 [56.2 kB]
259s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB]
259s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB]
259s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libwacom-common all 2.13.0-1 [98.6 kB]
259s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libwacom9 armhf 2.13.0-1 [22.3 kB]
259s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libinput-bin armhf 1.26.2-1 [25.2 kB]
259s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libmtdev1t64 armhf 1.1.6-1.2 [13.2 kB]
259s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libinput10 armhf 1.26.2-1 [119 kB]
259s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB]
259s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
259s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-4 [2086 kB]
259s Get:59 http://ftpmaster.internal/ubuntu plucky/universe armhf libmd4c0 armhf 0.5.2-2 [38.2 kB]
259s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf libnetcdf19t64 armhf 1:4.9.2-6ubuntu1 [419 kB]
259s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-16-0 armhf 10.42-4ubuntu3 [186 kB]
259s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12t64 armhf 3.12.8-3 [2094 kB]
259s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5core5t64 armhf 5.15.15+dfsg-1ubuntu1 [1765 kB]
259s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5dbus5t64 armhf 5.15.15+dfsg-1ubuntu1 [198 kB]
259s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libegl1 armhf 1.7.0-1build1 [29.8 kB]
259s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libgles2 armhf 1.7.0-1build1 [18.0 kB]
259s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5network5t64 armhf 5.15.15+dfsg-1ubuntu1 [654 kB]
259s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB]
259s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-icccm4 armhf 0.4.2-1 [9840 B]
259s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-util1 armhf 0.4.0-1build3 [9224 B]
259s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-image0 armhf 0.4.0-2build1 [9680 B]
259s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-keysyms1 armhf 0.4.0-1build4 [7260 B]
260s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB]
260s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render-util0 armhf 0.3.9-1build4 [8648 B]
260s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shape0 armhf 1.17.0-2 [6030 B]
260s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xinerama0 armhf 1.17.0-2 [5212 B]
260s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xinput0 armhf 1.17.0-2 [29.5 kB]
260s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xkb1 armhf 1.17.0-2 [28.8 kB]
260s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libxkbcommon-x11-0 armhf 1.7.0-2 [13.6 kB]
260s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB]
260s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5gui5t64 armhf 5.15.15+dfsg-1ubuntu1 [2971 kB]
260s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5widgets5t64 armhf 5.15.15+dfsg-1ubuntu1 [2261 kB]
260s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5xml5t64 armhf 5.15.15+dfsg-1ubuntu1 [108 kB]
260s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5designer5 armhf 5.15.15-4 [2729 kB]
260s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5sql5t64 armhf 5.15.15+dfsg-1ubuntu1 [108 kB]
260s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5help5 armhf 5.15.15-4 [145 kB]
260s Get:87 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5opengl5t64 armhf 5.15.15+dfsg-1ubuntu1 [126 kB]
260s Get:88 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5printsupport5t64 armhf 5.15.15+dfsg-1ubuntu1 [192 kB]
260s Get:89 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5test5t64 armhf 5.15.15+dfsg-1ubuntu1 [135 kB]
260s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-12 [4001 kB]
260s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB]
260s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf libglu1-mesa armhf 9.0.2-1.1build1 [153 kB]
260s Get:93 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-opengl all 3.1.7+dfsg-1 [612 kB]
260s Get:94 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5.sip armhf 12.16.1-1 [59.3 kB]
260s Get:95 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5 armhf 5.15.11+dfsg-1build1 [2206 kB]
260s Get:96 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5.qtopengl armhf 5.15.11+dfsg-1build1 [46.9 kB]
260s Get:97 http://ftpmaster.internal/ubuntu plucky/universe armhf pymol-data all 3.0.0+dfsg-1build1 [1394 kB]
260s Get:98 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pymol armhf 3.0.0+dfsg-1build1 [4004 kB]
260s Get:99 http://ftpmaster.internal/ubuntu plucky/universe armhf pymol all 3.0.0+dfsg-1build1 [126 kB]
261s Fetched 71.1 MB in 4s (19.6 MB/s)
261s Selecting previously unselected package libnsl2:armhf.
261s (Reading database ... 
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261s Preparing to unpack .../000-libnsl2_1.3.0-3build3_armhf.deb ...
261s Unpacking libnsl2:armhf (1.3.0-3build3) ...
261s Selecting previously unselected package libpython3.12-minimal:armhf.
261s Preparing to unpack .../001-libpython3.12-minimal_3.12.8-3_armhf.deb ...
261s Unpacking libpython3.12-minimal:armhf (3.12.8-3) ...
261s Selecting previously unselected package libpython3.12-stdlib:armhf.
261s Preparing to unpack .../002-libpython3.12-stdlib_3.12.8-3_armhf.deb ...
261s Unpacking libpython3.12-stdlib:armhf (3.12.8-3) ...
261s Selecting previously unselected package libfreetype6:armhf.
261s Preparing to unpack .../003-libfreetype6_2.13.3+dfsg-1_armhf.deb ...
261s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ...
261s Selecting previously unselected package fonts-dejavu-mono.
261s Preparing to unpack .../004-fonts-dejavu-mono_2.37-8_all.deb ...
261s Unpacking fonts-dejavu-mono (2.37-8) ...
261s Selecting previously unselected package fonts-dejavu-core.
261s Preparing to unpack .../005-fonts-dejavu-core_2.37-8_all.deb ...
261s Unpacking fonts-dejavu-core (2.37-8) ...
261s Selecting previously unselected package fontconfig-config.
261s Preparing to unpack .../006-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ...
261s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
261s Selecting previously unselected package libfontconfig1:armhf.
261s Preparing to unpack .../007-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ...
261s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ...
261s Selecting previously unselected package fontconfig.
261s Preparing to unpack .../008-fontconfig_2.15.0-1.1ubuntu2_armhf.deb ...
261s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
261s Selecting previously unselected package libaec0:armhf.
261s Preparing to unpack .../009-libaec0_1.1.3-1_armhf.deb ...
261s Unpacking libaec0:armhf (1.1.3-1) ...
262s Selecting previously unselected package libavahi-common-data:armhf.
262s Preparing to unpack .../010-libavahi-common-data_0.8-14ubuntu1_armhf.deb ...
262s Unpacking libavahi-common-data:armhf (0.8-14ubuntu1) ...
262s Selecting previously unselected package libavahi-common3:armhf.
262s Preparing to unpack .../011-libavahi-common3_0.8-14ubuntu1_armhf.deb ...
262s Unpacking libavahi-common3:armhf (0.8-14ubuntu1) ...
262s Selecting previously unselected package libavahi-client3:armhf.
262s Preparing to unpack .../012-libavahi-client3_0.8-14ubuntu1_armhf.deb ...
262s Unpacking libavahi-client3:armhf (0.8-14ubuntu1) ...
262s Selecting previously unselected package libblas3:armhf.
262s Preparing to unpack .../013-libblas3_3.12.0-4_armhf.deb ...
262s Unpacking libblas3:armhf (3.12.0-4) ...
262s Selecting previously unselected package libcups2t64:armhf.
262s Preparing to unpack .../014-libcups2t64_2.4.11-0ubuntu2_armhf.deb ...
262s Unpacking libcups2t64:armhf (2.4.11-0ubuntu2) ...
262s Selecting previously unselected package libdouble-conversion3:armhf.
262s Preparing to unpack .../015-libdouble-conversion3_3.3.0-1build1_armhf.deb ...
262s Unpacking libdouble-conversion3:armhf (3.3.0-1build1) ...
262s Selecting previously unselected package libdrm-radeon1:armhf.
262s Preparing to unpack .../016-libdrm-radeon1_2.4.123-1_armhf.deb ...
262s Unpacking libdrm-radeon1:armhf (2.4.123-1) ...
262s Selecting previously unselected package libwayland-server0:armhf.
262s Preparing to unpack .../017-libwayland-server0_1.23.0-1_armhf.deb ...
262s Unpacking libwayland-server0:armhf (1.23.0-1) ...
262s Selecting previously unselected package libxcb-randr0:armhf.
262s Preparing to unpack .../018-libxcb-randr0_1.17.0-2_armhf.deb ...
262s Unpacking libxcb-randr0:armhf (1.17.0-2) ...
262s Selecting previously unselected package libglapi-mesa:armhf.
262s Preparing to unpack .../019-libglapi-mesa_24.2.8-1ubuntu1_armhf.deb ...
262s Unpacking libglapi-mesa:armhf (24.2.8-1ubuntu1) ...
262s Selecting previously unselected package libllvm19:armhf.
262s Preparing to unpack .../020-libllvm19_1%3a19.1.6-1ubuntu1_armhf.deb ...
262s Unpacking libllvm19:armhf (1:19.1.6-1ubuntu1) ...
263s Selecting previously unselected package libx11-xcb1:armhf.
263s Preparing to unpack .../021-libx11-xcb1_2%3a1.8.10-2_armhf.deb ...
263s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ...
263s Selecting previously unselected package libxcb-dri2-0:armhf.
263s Preparing to unpack .../022-libxcb-dri2-0_1.17.0-2_armhf.deb ...
263s Unpacking libxcb-dri2-0:armhf (1.17.0-2) ...
263s Selecting previously unselected package libxcb-dri3-0:armhf.
263s Preparing to unpack .../023-libxcb-dri3-0_1.17.0-2_armhf.deb ...
263s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ...
263s Selecting previously unselected package libxcb-present0:armhf.
263s Preparing to unpack .../024-libxcb-present0_1.17.0-2_armhf.deb ...
263s Unpacking libxcb-present0:armhf (1.17.0-2) ...
263s Selecting previously unselected package libxcb-sync1:armhf.
263s Preparing to unpack .../025-libxcb-sync1_1.17.0-2_armhf.deb ...
263s Unpacking libxcb-sync1:armhf (1.17.0-2) ...
263s Selecting previously unselected package libxcb-xfixes0:armhf.
263s Preparing to unpack .../026-libxcb-xfixes0_1.17.0-2_armhf.deb ...
263s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ...
263s Selecting previously unselected package libxshmfence1:armhf.
263s Preparing to unpack .../027-libxshmfence1_1.3-1build5_armhf.deb ...
263s Unpacking libxshmfence1:armhf (1.3-1build5) ...
263s Selecting previously unselected package mesa-libgallium:armhf.
263s Preparing to unpack .../028-mesa-libgallium_24.2.8-1ubuntu1_armhf.deb ...
263s Unpacking mesa-libgallium:armhf (24.2.8-1ubuntu1) ...
263s Selecting previously unselected package libgbm1:armhf.
263s Preparing to unpack .../029-libgbm1_24.2.8-1ubuntu1_armhf.deb ...
263s Unpacking libgbm1:armhf (24.2.8-1ubuntu1) ...
263s Selecting previously unselected package libwayland-client0:armhf.
263s Preparing to unpack .../030-libwayland-client0_1.23.0-1_armhf.deb ...
263s Unpacking libwayland-client0:armhf (1.23.0-1) ...
263s Selecting previously unselected package libxcb-shm0:armhf.
263s Preparing to unpack .../031-libxcb-shm0_1.17.0-2_armhf.deb ...
263s Unpacking libxcb-shm0:armhf (1.17.0-2) ...
263s Selecting previously unselected package libegl-mesa0:armhf.
263s Preparing to unpack .../032-libegl-mesa0_24.2.8-1ubuntu1_armhf.deb ...
263s Unpacking libegl-mesa0:armhf (24.2.8-1ubuntu1) ...
263s Selecting previously unselected package libgfortran5:armhf.
263s Preparing to unpack .../033-libgfortran5_14.2.0-12ubuntu1_armhf.deb ...
263s Unpacking libgfortran5:armhf (14.2.0-12ubuntu1) ...
263s Selecting previously unselected package libvulkan1:armhf.
263s Preparing to unpack .../034-libvulkan1_1.3.296.0-1_armhf.deb ...
263s Unpacking libvulkan1:armhf (1.3.296.0-1) ...
263s Selecting previously unselected package libgl1-mesa-dri:armhf.
263s Preparing to unpack .../035-libgl1-mesa-dri_24.2.8-1ubuntu1_armhf.deb ...
263s Unpacking libgl1-mesa-dri:armhf (24.2.8-1ubuntu1) ...
263s Selecting previously unselected package libglvnd0:armhf.
264s Preparing to unpack .../036-libglvnd0_1.7.0-1build1_armhf.deb ...
264s Unpacking libglvnd0:armhf (1.7.0-1build1) ...
264s Selecting previously unselected package libxcb-glx0:armhf.
264s Preparing to unpack .../037-libxcb-glx0_1.17.0-2_armhf.deb ...
264s Unpacking libxcb-glx0:armhf (1.17.0-2) ...
264s Selecting previously unselected package libxfixes3:armhf.
264s Preparing to unpack .../038-libxfixes3_1%3a6.0.0-2build1_armhf.deb ...
264s Unpacking libxfixes3:armhf (1:6.0.0-2build1) ...
264s Selecting previously unselected package libxxf86vm1:armhf.
264s Preparing to unpack .../039-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ...
264s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ...
264s Selecting previously unselected package libglx-mesa0:armhf.
264s Preparing to unpack .../040-libglx-mesa0_24.2.8-1ubuntu1_armhf.deb ...
264s Unpacking libglx-mesa0:armhf (24.2.8-1ubuntu1) ...
264s Selecting previously unselected package libglx0:armhf.
264s Preparing to unpack .../041-libglx0_1.7.0-1build1_armhf.deb ...
264s Unpacking libglx0:armhf (1.7.0-1build1) ...
264s Selecting previously unselected package libgl1:armhf.
264s Preparing to unpack .../042-libgl1_1.7.0-1build1_armhf.deb ...
264s Unpacking libgl1:armhf (1.7.0-1build1) ...
264s Selecting previously unselected package libglew2.2:armhf.
264s Preparing to unpack .../043-libglew2.2_2.2.0-4build1_armhf.deb ...
264s Unpacking libglew2.2:armhf (2.2.0-4build1) ...
264s Selecting previously unselected package libgomp1:armhf.
264s Preparing to unpack .../044-libgomp1_14.2.0-12ubuntu1_armhf.deb ...
264s Unpacking libgomp1:armhf (14.2.0-12ubuntu1) ...
264s Selecting previously unselected package libgraphite2-3:armhf.
264s Preparing to unpack .../045-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ...
264s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ...
264s Selecting previously unselected package libharfbuzz0b:armhf.
264s Preparing to unpack .../046-libharfbuzz0b_10.1.0-1_armhf.deb ...
264s Unpacking libharfbuzz0b:armhf (10.1.0-1) ...
264s Selecting previously unselected package libsz2:armhf.
264s Preparing to unpack .../047-libsz2_1.1.3-1_armhf.deb ...
264s Unpacking libsz2:armhf (1.1.3-1) ...
264s Selecting previously unselected package libhdf5-103-1t64:armhf.
264s Preparing to unpack .../048-libhdf5-103-1t64_1.10.10+repack-5ubuntu1_armhf.deb ...
264s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-5ubuntu1) ...
264s Selecting previously unselected package libhdf5-hl-100t64:armhf.
264s Preparing to unpack .../049-libhdf5-hl-100t64_1.10.10+repack-5ubuntu1_armhf.deb ...
264s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-5ubuntu1) ...
264s Selecting previously unselected package x11-common.
264s Preparing to unpack .../050-x11-common_1%3a7.7+23ubuntu3_all.deb ...
264s Unpacking x11-common (1:7.7+23ubuntu3) ...
264s Selecting previously unselected package libice6:armhf.
264s Preparing to unpack .../051-libice6_2%3a1.1.1-1_armhf.deb ...
264s Unpacking libice6:armhf (2:1.1.1-1) ...
264s Selecting previously unselected package libwacom-common.
264s Preparing to unpack .../052-libwacom-common_2.13.0-1_all.deb ...
264s Unpacking libwacom-common (2.13.0-1) ...
264s Selecting previously unselected package libwacom9:armhf.
264s Preparing to unpack .../053-libwacom9_2.13.0-1_armhf.deb ...
264s Unpacking libwacom9:armhf (2.13.0-1) ...
264s Selecting previously unselected package libinput-bin.
264s Preparing to unpack .../054-libinput-bin_1.26.2-1_armhf.deb ...
264s Unpacking libinput-bin (1.26.2-1) ...
264s Selecting previously unselected package libmtdev1t64:armhf.
264s Preparing to unpack .../055-libmtdev1t64_1.1.6-1.2_armhf.deb ...
264s Unpacking libmtdev1t64:armhf (1.1.6-1.2) ...
264s Selecting previously unselected package libinput10:armhf.
264s Preparing to unpack .../056-libinput10_1.26.2-1_armhf.deb ...
264s Unpacking libinput10:armhf (1.26.2-1) ...
264s Selecting previously unselected package libjpeg-turbo8:armhf.
264s Preparing to unpack .../057-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ...
264s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ...
264s Selecting previously unselected package libjpeg8:armhf.
264s Preparing to unpack .../058-libjpeg8_8c-2ubuntu11_armhf.deb ...
264s Unpacking libjpeg8:armhf (8c-2ubuntu11) ...
264s Selecting previously unselected package liblapack3:armhf.
264s Preparing to unpack .../059-liblapack3_3.12.0-4_armhf.deb ...
264s Unpacking liblapack3:armhf (3.12.0-4) ...
265s Selecting previously unselected package libmd4c0:armhf.
265s Preparing to unpack .../060-libmd4c0_0.5.2-2_armhf.deb ...
265s Unpacking libmd4c0:armhf (0.5.2-2) ...
265s Selecting previously unselected package libnetcdf19t64:armhf.
265s Preparing to unpack .../061-libnetcdf19t64_1%3a4.9.2-6ubuntu1_armhf.deb ...
265s Unpacking libnetcdf19t64:armhf (1:4.9.2-6ubuntu1) ...
265s Selecting previously unselected package libpcre2-16-0:armhf.
265s Preparing to unpack .../062-libpcre2-16-0_10.42-4ubuntu3_armhf.deb ...
265s Unpacking libpcre2-16-0:armhf (10.42-4ubuntu3) ...
265s Selecting previously unselected package libpython3.12t64:armhf.
265s Preparing to unpack .../063-libpython3.12t64_3.12.8-3_armhf.deb ...
265s Unpacking libpython3.12t64:armhf (3.12.8-3) ...
265s Selecting previously unselected package libqt5core5t64:armhf.
265s Preparing to unpack .../064-libqt5core5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
265s Unpacking libqt5core5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
265s Selecting previously unselected package libqt5dbus5t64:armhf.
265s Preparing to unpack .../065-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
265s Unpacking libqt5dbus5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
265s Selecting previously unselected package libegl1:armhf.
265s Preparing to unpack .../066-libegl1_1.7.0-1build1_armhf.deb ...
265s Unpacking libegl1:armhf (1.7.0-1build1) ...
265s Selecting previously unselected package libgles2:armhf.
265s Preparing to unpack .../067-libgles2_1.7.0-1build1_armhf.deb ...
265s Unpacking libgles2:armhf (1.7.0-1build1) ...
265s Selecting previously unselected package libqt5network5t64:armhf.
265s Preparing to unpack .../068-libqt5network5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
265s Unpacking libqt5network5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
265s Selecting previously unselected package libsm6:armhf.
265s Preparing to unpack .../069-libsm6_2%3a1.2.4-1_armhf.deb ...
265s Unpacking libsm6:armhf (2:1.2.4-1) ...
265s Selecting previously unselected package libxcb-icccm4:armhf.
265s Preparing to unpack .../070-libxcb-icccm4_0.4.2-1_armhf.deb ...
265s Unpacking libxcb-icccm4:armhf (0.4.2-1) ...
265s Selecting previously unselected package libxcb-util1:armhf.
265s Preparing to unpack .../071-libxcb-util1_0.4.0-1build3_armhf.deb ...
265s Unpacking libxcb-util1:armhf (0.4.0-1build3) ...
265s Selecting previously unselected package libxcb-image0:armhf.
265s Preparing to unpack .../072-libxcb-image0_0.4.0-2build1_armhf.deb ...
265s Unpacking libxcb-image0:armhf (0.4.0-2build1) ...
265s Selecting previously unselected package libxcb-keysyms1:armhf.
265s Preparing to unpack .../073-libxcb-keysyms1_0.4.0-1build4_armhf.deb ...
265s Unpacking libxcb-keysyms1:armhf (0.4.0-1build4) ...
265s Selecting previously unselected package libxcb-render0:armhf.
265s Preparing to unpack .../074-libxcb-render0_1.17.0-2_armhf.deb ...
265s Unpacking libxcb-render0:armhf (1.17.0-2) ...
265s Selecting previously unselected package libxcb-render-util0:armhf.
265s Preparing to unpack .../075-libxcb-render-util0_0.3.9-1build4_armhf.deb ...
265s Unpacking libxcb-render-util0:armhf (0.3.9-1build4) ...
265s Selecting previously unselected package libxcb-shape0:armhf.
265s Preparing to unpack .../076-libxcb-shape0_1.17.0-2_armhf.deb ...
265s Unpacking libxcb-shape0:armhf (1.17.0-2) ...
265s Selecting previously unselected package libxcb-xinerama0:armhf.
265s Preparing to unpack .../077-libxcb-xinerama0_1.17.0-2_armhf.deb ...
265s Unpacking libxcb-xinerama0:armhf (1.17.0-2) ...
265s Selecting previously unselected package libxcb-xinput0:armhf.
265s Preparing to unpack .../078-libxcb-xinput0_1.17.0-2_armhf.deb ...
265s Unpacking libxcb-xinput0:armhf (1.17.0-2) ...
265s Selecting previously unselected package libxcb-xkb1:armhf.
265s Preparing to unpack .../079-libxcb-xkb1_1.17.0-2_armhf.deb ...
265s Unpacking libxcb-xkb1:armhf (1.17.0-2) ...
265s Selecting previously unselected package libxkbcommon-x11-0:armhf.
265s Preparing to unpack .../080-libxkbcommon-x11-0_1.7.0-2_armhf.deb ...
265s Unpacking libxkbcommon-x11-0:armhf (1.7.0-2) ...
265s Selecting previously unselected package libxrender1:armhf.
265s Preparing to unpack .../081-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ...
265s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ...
265s Selecting previously unselected package libqt5gui5t64:armhf.
265s Preparing to unpack .../082-libqt5gui5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
265s Unpacking libqt5gui5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
266s Selecting previously unselected package libqt5widgets5t64:armhf.
266s Preparing to unpack .../083-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
266s Unpacking libqt5widgets5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
266s Selecting previously unselected package libqt5xml5t64:armhf.
266s Preparing to unpack .../084-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
266s Unpacking libqt5xml5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
266s Selecting previously unselected package libqt5designer5:armhf.
266s Preparing to unpack .../085-libqt5designer5_5.15.15-4_armhf.deb ...
266s Unpacking libqt5designer5:armhf (5.15.15-4) ...
266s Selecting previously unselected package libqt5sql5t64:armhf.
266s Preparing to unpack .../086-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
266s Unpacking libqt5sql5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
266s Selecting previously unselected package libqt5help5:armhf.
266s Preparing to unpack .../087-libqt5help5_5.15.15-4_armhf.deb ...
266s Unpacking libqt5help5:armhf (5.15.15-4) ...
266s Selecting previously unselected package libqt5opengl5t64:armhf.
266s Preparing to unpack .../088-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
266s Unpacking libqt5opengl5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
266s Selecting previously unselected package libqt5printsupport5t64:armhf.
266s Preparing to unpack .../089-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
266s Unpacking libqt5printsupport5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
266s Selecting previously unselected package libqt5test5t64:armhf.
266s Preparing to unpack .../090-libqt5test5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ...
266s Unpacking libqt5test5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
266s Selecting previously unselected package python3-numpy.
266s Preparing to unpack .../091-python3-numpy_1%3a1.26.4+ds-12_armhf.deb ...
266s Unpacking python3-numpy (1:1.26.4+ds-12) ...
266s Selecting previously unselected package libopengl0:armhf.
266s Preparing to unpack .../092-libopengl0_1.7.0-1build1_armhf.deb ...
266s Unpacking libopengl0:armhf (1.7.0-1build1) ...
266s Selecting previously unselected package libglu1-mesa:armhf.
266s Preparing to unpack .../093-libglu1-mesa_9.0.2-1.1build1_armhf.deb ...
266s Unpacking libglu1-mesa:armhf (9.0.2-1.1build1) ...
266s Selecting previously unselected package python3-opengl.
266s Preparing to unpack .../094-python3-opengl_3.1.7+dfsg-1_all.deb ...
266s Unpacking python3-opengl (3.1.7+dfsg-1) ...
267s Selecting previously unselected package python3-pyqt5.sip.
267s Preparing to unpack .../095-python3-pyqt5.sip_12.16.1-1_armhf.deb ...
267s Unpacking python3-pyqt5.sip (12.16.1-1) ...
267s Selecting previously unselected package python3-pyqt5.
267s Preparing to unpack .../096-python3-pyqt5_5.15.11+dfsg-1build1_armhf.deb ...
267s Unpacking python3-pyqt5 (5.15.11+dfsg-1build1) ...
267s Selecting previously unselected package python3-pyqt5.qtopengl.
267s Preparing to unpack .../097-python3-pyqt5.qtopengl_5.15.11+dfsg-1build1_armhf.deb ...
267s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ...
267s Selecting previously unselected package pymol-data.
267s Preparing to unpack .../098-pymol-data_3.0.0+dfsg-1build1_all.deb ...
267s Unpacking pymol-data (3.0.0+dfsg-1build1) ...
267s Selecting previously unselected package python3-pymol.
267s Preparing to unpack .../099-python3-pymol_3.0.0+dfsg-1build1_armhf.deb ...
267s Unpacking python3-pymol (3.0.0+dfsg-1build1) ...
267s Selecting previously unselected package pymol.
267s Preparing to unpack .../100-pymol_3.0.0+dfsg-1build1_all.deb ...
267s Unpacking pymol (3.0.0+dfsg-1build1) ...
267s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ...
267s Setting up libxcb-dri3-0:armhf (1.17.0-2) ...
267s Setting up libllvm19:armhf (1:19.1.6-1ubuntu1) ...
267s Setting up libwayland-server0:armhf (1.23.0-1) ...
267s Setting up libx11-xcb1:armhf (2:1.8.10-2) ...
267s Setting up libdouble-conversion3:armhf (3.3.0-1build1) ...
267s Setting up libxcb-xfixes0:armhf (1.17.0-2) ...
267s Setting up libxcb-xinput0:armhf (1.17.0-2) ...
267s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ...
267s Setting up libxcb-render0:armhf (1.17.0-2) ...
267s Setting up libdrm-radeon1:armhf (2.4.123-1) ...
267s Setting up libglvnd0:armhf (1.7.0-1build1) ...
267s Setting up libxcb-glx0:armhf (1.17.0-2) ...
267s Setting up libxcb-keysyms1:armhf (0.4.0-1build4) ...
267s Setting up libxcb-shape0:armhf (1.17.0-2) ...
267s Setting up libpython3.12-minimal:armhf (3.12.8-3) ...
267s Setting up x11-common (1:7.7+23ubuntu3) ...
268s Setting up libxcb-render-util0:armhf (0.3.9-1build4) ...
268s Setting up libxcb-shm0:armhf (1.17.0-2) ...
268s Setting up libxcb-icccm4:armhf (0.4.2-1) ...
268s Setting up libgomp1:armhf (14.2.0-12ubuntu1) ...
268s Setting up libpcre2-16-0:armhf (10.42-4ubuntu3) ...
268s Setting up libaec0:armhf (1.1.3-1) ...
268s Setting up libopengl0:armhf (1.7.0-1build1) ...
268s Setting up libxcb-util1:armhf (0.4.0-1build3) ...
268s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ...
268s Setting up libxcb-xkb1:armhf (1.17.0-2) ...
268s Setting up libxcb-image0:armhf (0.4.0-2build1) ...
268s Setting up libxcb-present0:armhf (1.17.0-2) ...
268s Setting up libqt5core5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
268s Setting up libblas3:armhf (3.12.0-4) ...
268s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
268s Setting up libxcb-xinerama0:armhf (1.17.0-2) ...
268s Setting up libgles2:armhf (1.7.0-1build1) ...
268s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ...
268s Setting up libxfixes3:armhf (1:6.0.0-2build1) ...
268s Setting up libxcb-sync1:armhf (1.17.0-2) ...
268s Setting up libavahi-common-data:armhf (0.8-14ubuntu1) ...
268s Setting up pymol-data (3.0.0+dfsg-1build1) ...
268s Setting up libxkbcommon-x11-0:armhf (1.7.0-2) ...
268s Setting up fonts-dejavu-mono (2.37-8) ...
268s Setting up fonts-dejavu-core (2.37-8) ...
268s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ...
268s Setting up libglapi-mesa:armhf (24.2.8-1ubuntu1) ...
268s Setting up libgfortran5:armhf (14.2.0-12ubuntu1) ...
268s Setting up libvulkan1:armhf (1.3.296.0-1) ...
268s Setting up libxcb-dri2-0:armhf (1.17.0-2) ...
268s Setting up python3-pyqt5.sip (12.16.1-1) ...
268s Setting up libmtdev1t64:armhf (1.1.6-1.2) ...
268s Setting up libxshmfence1:armhf (1.3-1build5) ...
268s Setting up libxcb-randr0:armhf (1.17.0-2) ...
268s Setting up libnsl2:armhf (1.3.0-3build3) ...
268s Setting up libqt5sql5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
268s Setting up libmd4c0:armhf (0.5.2-2) ...
268s Setting up libharfbuzz0b:armhf (10.1.0-1) ...
268s Setting up libglu1-mesa:armhf (9.0.2-1.1build1) ...
268s Setting up libsz2:armhf (1.1.3-1) ...
268s Setting up libwacom-common (2.13.0-1) ...
268s Setting up libwayland-client0:armhf (1.23.0-1) ...
268s Setting up libjpeg8:armhf (8c-2ubuntu11) ...
268s Setting up libice6:armhf (2:1.1.1-1) ...
268s Setting up mesa-libgallium:armhf (24.2.8-1ubuntu1) ...
268s Setting up liblapack3:armhf (3.12.0-4) ...
268s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
268s Setting up libqt5dbus5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
268s Setting up libpython3.12-stdlib:armhf (3.12.8-3) ...
268s Setting up libgbm1:armhf (24.2.8-1ubuntu1) ...
268s Setting up libwacom9:armhf (2.13.0-1) ...
268s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
268s Setting up libgl1-mesa-dri:armhf (24.2.8-1ubuntu1) ...
268s Setting up libqt5network5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
268s Setting up libavahi-common3:armhf (0.8-14ubuntu1) ...
268s Setting up libqt5xml5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
268s Setting up libqt5test5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
268s Setting up libinput-bin (1.26.2-1) ...
268s Setting up libpython3.12t64:armhf (3.12.8-3) ...
268s Setting up libegl-mesa0:armhf (24.2.8-1ubuntu1) ...
268s Setting up python3-numpy (1:1.26.4+ds-12) ...
270s Setting up libegl1:armhf (1.7.0-1build1) ...
270s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-5ubuntu1) ...
270s Setting up libsm6:armhf (2:1.2.4-1) ...
270s Setting up libavahi-client3:armhf (0.8-14ubuntu1) ...
270s Setting up libinput10:armhf (1.26.2-1) ...
270s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-5ubuntu1) ...
270s Setting up libnetcdf19t64:armhf (1:4.9.2-6ubuntu1) ...
270s Setting up libglx-mesa0:armhf (24.2.8-1ubuntu1) ...
270s Setting up libglx0:armhf (1.7.0-1build1) ...
270s Setting up libgl1:armhf (1.7.0-1build1) ...
270s Setting up libglew2.2:armhf (2.2.0-4build1) ...
270s Setting up libcups2t64:armhf (2.4.11-0ubuntu2) ...
270s Setting up python3-opengl (3.1.7+dfsg-1) ...
270s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ '
270s   '''OpenGL extension AMD.vertex_shader_tessellator
272s Processing triggers for udev (257-2ubuntu1) ...
272s Processing triggers for sgml-base (1.31) ...
272s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ...
272s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
274s Regenerating fonts cache... done.
274s Processing triggers for libc-bin (2.40-4ubuntu1) ...
274s Processing triggers for man-db (2.13.0-1) ...
275s Setting up libqt5gui5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
275s Setting up libqt5widgets5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
275s Setting up libqt5help5:armhf (5.15.15-4) ...
275s Setting up libqt5opengl5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
275s Setting up libqt5printsupport5t64:armhf (5.15.15+dfsg-1ubuntu1) ...
275s Setting up libqt5designer5:armhf (5.15.15-4) ...
275s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ...
275s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ...
275s Setting up python3-pymol (3.0.0+dfsg-1build1) ...
276s Setting up pymol (3.0.0+dfsg-1build1) ...
276s Processing triggers for libc-bin (2.40-4ubuntu1) ...
285s autopkgtest [17:15:31]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)"
285s autopkgtest [17:15:31]: test command1: [-----------------------
287s Search pymol scripts in /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples...
287s Processing new directory /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples
287s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/chempy/generate_amber.py'...
288s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/chempy/generate_mmff.py'...
288s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/area_diff.pml'...
289s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/build_peptide.py'...
289s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/contact.pml
289s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/dali.py
289s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/density.pml
289s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/groel_es.pml
289s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/multiclip_ray.pml
289s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/packing.pml
289s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/packsurf.pml
289s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/ref_frame.pml
289s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/ribosome.pml
289s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/scenes2movie.pml
289s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/seq_match_sele.pml'...
291s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/ss_xfer.pml
291s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/symsph.py'...
291s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/brick01.py'...
292s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo01.py'...
292s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo02.py'...
295s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo03.py'...
298s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo04.py'...
298s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo05.py'...
299s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo06.py'...
300s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo07.py'...
300s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo08.py'...
300s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo_3Dtext01.py'...
301s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo_axes.py'...
301s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo_label_hack.py'...
304s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo_plane.py'...
304s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/chempy_model01.py'...
304s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/chempy_model02.py'...
305s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/chempy_model03.py'...
308s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/click_ordered_list.py'...
308s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/count_molecules.py'...
308s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/extend_demo01.py'...
309s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/gl01.py'...
309s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/gl02.py'...
309s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/gl03.py'...
313s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/importing.py
313s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/link_demo.py'...
313s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/membrane.py'...
313s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/mutate01.pml'...
314s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/mutate02.py'...
315s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/my_ext_gui.py'...
316s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/particle01.py'...
316s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/particle02.py'...
317s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/pick_wiz.py'...
317s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/povray01.py
317s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/scenes_to_movie01.pml'...
317s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/sd_annotate.pml
317s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/sele_wiz.py'...
317s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/start_pymol.py
317s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/syncmol.py'...
317s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/tkwindow.py
317s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui01.py'...
318s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
318s  Copyright (c) Schrodinger, LLC.
318s  All Rights Reserved.
318s  
318s     Created by Warren L. DeLano, Ph.D. 
318s  
318s     PyMOL is user-supported open-source software.  Although some versions
318s     are freely available, PyMOL is not in the public domain.
318s  
318s     If PyMOL is helpful in your work or study, then please volunteer 
318s     support for our ongoing efforts to create open and affordable scientific
318s     software by purchasing a PyMOL Maintenance and/or Support subscription.
318s 
318s     More information can be found at "http://www.pymol.org".
318s  
318s     Enter "help" for a list of commands.
318s     Enter "help <command-name>" for information on a specific command.
318s 
318s  Hit ESC anytime to toggle between text and graphics.
318s 
318s  Detected 8 CPU cores.  Enabled multithreaded rendering.
318s Traceback (most recent call last):
318s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run
318s     run_(path, ns_pymol, ns_pymol)
318s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^
318s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file
318s     execfile(file,global_ns,local_ns)
318s     ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
318s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile
318s     exec(co, global_ns, local_ns)
318s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
318s   File "/tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui01.py", line 7, in <module>
318s     import cgi
318s ModuleNotFoundError: No module named 'cgi'
318s 	not ok - error-related patterns were found in pymol output
318s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui02.py'...
318s /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
318s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
319s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
319s  Copyright (c) Schrodinger, LLC.
319s  All Rights Reserved.
319s  
319s     Created by Warren L. DeLano, Ph.D. 
319s  
319s     PyMOL is user-supported open-source software.  Although some versions
319s     are freely available, PyMOL is not in the public domain.
319s  
319s     If PyMOL is helpful in your work or study, then please volunteer 
319s     support for our ongoing efforts to create open and affordable scientific
319s     software by purchasing a PyMOL Maintenance and/or Support subscription.
319s 
319s     More information can be found at "http://www.pymol.org".
319s  
319s     Enter "help" for a list of commands.
319s     Enter "help <command-name>" for information on a specific command.
319s 
319s  Hit ESC anytime to toggle between text and graphics.
319s 
319s /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
319s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
319s  Detected 8 CPU cores.  Enabled multithreaded rendering.
319s Traceback (most recent call last):
319s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run
319s     run_(path, ns_pymol, ns_pymol)
319s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^
319s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file
319s     execfile(file,global_ns,local_ns)
319s     ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
319s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile
319s     exec(co, global_ns, local_ns)
319s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
319s   File "/tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui02.py", line 10, in <module>
319s     import cgi
319s ModuleNotFoundError: No module named 'cgi'
319s 	not ok - error-related patterns were found in pymol output
319s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/xmlrpc01.py
319s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/xmlrpc02.py'...
319s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/launching/launch_demo.py'...
319s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/launching/launch_viewer1.py'...
319s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/launching/launch_viewer2.py'...
319s Processing new directory /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/chempy
319s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/chempy/generate_amber.py'...
320s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/chempy/generate_mmff.py'...
320s Processing new directory /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook
320s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/area_diff.pml'...
321s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/build_peptide.py'...
321s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/contact.pml
321s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/dali.py
321s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/density.pml
321s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/groel_es.pml
321s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/multiclip_ray.pml
321s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/packing.pml
321s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/packsurf.pml
321s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/ref_frame.pml
321s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/ribosome.pml
321s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/scenes2movie.pml
321s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/seq_match_sele.pml'...
323s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/ss_xfer.pml
323s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/cookbook/symsph.py'...
323s Processing new directory /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel
323s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/brick01.py'...
323s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo01.py'...
323s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo02.py'...
327s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo03.py'...
330s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo04.py'...
330s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo05.py'...
330s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo06.py'...
332s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo07.py'...
332s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo08.py'...
332s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo_3Dtext01.py'...
333s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo_axes.py'...
333s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo_label_hack.py'...
336s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/cgo_plane.py'...
336s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/chempy_model01.py'...
336s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/chempy_model02.py'...
337s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/chempy_model03.py'...
340s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/click_ordered_list.py'...
341s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/count_molecules.py'...
341s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/extend_demo01.py'...
341s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/gl01.py'...
342s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/gl02.py'...
342s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/gl03.py'...
346s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/importing.py
346s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/link_demo.py'...
346s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/membrane.py'...
346s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/mutate01.pml'...
347s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/mutate02.py'...
348s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/my_ext_gui.py'...
349s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/particle01.py'...
349s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/particle02.py'...
349s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/pick_wiz.py'...
350s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/povray01.py
350s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/scenes_to_movie01.pml'...
350s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/sd_annotate.pml
350s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/sele_wiz.py'...
350s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/start_pymol.py
350s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/syncmol.py'...
350s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/tkwindow.py
350s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui01.py'...
351s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
351s  Copyright (c) Schrodinger, LLC.
351s  All Rights Reserved.
351s  
351s     Created by Warren L. DeLano, Ph.D. 
351s  
351s     PyMOL is user-supported open-source software.  Although some versions
351s     are freely available, PyMOL is not in the public domain.
351s  
351s     If PyMOL is helpful in your work or study, then please volunteer 
351s     support for our ongoing efforts to create open and affordable scientific
351s     software by purchasing a PyMOL Maintenance and/or Support subscription.
351s 
351s     More information can be found at "http://www.pymol.org".
351s  
351s     Enter "help" for a list of commands.
351s     Enter "help <command-name>" for information on a specific command.
351s 
351s  Hit ESC anytime to toggle between text and graphics.
351s 
351s  Detected 8 CPU cores.  Enabled multithreaded rendering.
351s Traceback (most recent call last):
351s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run
351s     run_(path, ns_pymol, ns_pymol)
351s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^
351s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file
351s     execfile(file,global_ns,local_ns)
351s     ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
351s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile
351s     exec(co, global_ns, local_ns)
351s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
351s   File "/tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui01.py", line 7, in <module>
351s     import cgi
351s ModuleNotFoundError: No module named 'cgi'
351s 	not ok - error-related patterns were found in pymol output
351s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui02.py'...
351s /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
351s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
351s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
351s  Copyright (c) Schrodinger, LLC.
351s  All Rights Reserved.
351s  
351s     Created by Warren L. DeLano, Ph.D. 
351s  
351s     PyMOL is user-supported open-source software.  Although some versions
351s     are freely available, PyMOL is not in the public domain.
351s  
351s     If PyMOL is helpful in your work or study, then please volunteer 
351s     support for our ongoing efforts to create open and affordable scientific
351s     software by purchasing a PyMOL Maintenance and/or Support subscription.
351s 
351s     More information can be found at "http://www.pymol.org".
351s  
351s     Enter "help" for a list of commands.
351s     Enter "help <command-name>" for information on a specific command.
351s 
351s  Hit ESC anytime to toggle between text and graphics.
351s 
351s /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
351s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
351s  Detected 8 CPU cores.  Enabled multithreaded rendering.
351s Traceback (most recent call last):
351s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run
351s     run_(path, ns_pymol, ns_pymol)
351s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^
351s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file
351s     execfile(file,global_ns,local_ns)
351s     ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
351s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile
351s     exec(co, global_ns, local_ns)
351s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
351s   File "/tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/webgui02.py", line 10, in <module>
351s     import cgi
351s ModuleNotFoundError: No module named 'cgi'
351s 	not ok - error-related patterns were found in pymol output
351s Skip /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/xmlrpc01.py
351s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/devel/xmlrpc02.py'...
351s Processing new directory /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/launching
351s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/launching/launch_demo.py'...
352s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/launching/launch_viewer1.py'...
352s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/examples/launching/launch_viewer2.py'...
352s autopkgtest [17:16:38]: test command1: -----------------------]
357s command1             PASS (superficial)
357s autopkgtest [17:16:43]: test command1:  - - - - - - - - - - results - - - - - - - - - -
361s autopkgtest [17:16:47]: test command2: preparing testbed
363s Reading package lists...
364s Building dependency tree...
364s Reading state information...
364s Starting pkgProblemResolver with broken count: 0
364s Starting 2 pkgProblemResolver with broken count: 0
364s Done
365s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
374s autopkgtest [17:17:00]: test command2: sh debian/tests/call-pymol-scripts data/demo
374s autopkgtest [17:17:00]: test command2: [-----------------------
377s Search pymol scripts in /tmp/autopkgtest.mZuIJ3/build.nbK/src/data/demo...
377s Processing new directory /tmp/autopkgtest.mZuIJ3/build.nbK/src/data/demo
377s Run 'pymol -c /tmp/autopkgtest.mZuIJ3/build.nbK/src/data/demo/cgo03.py'...
381s autopkgtest [17:17:07]: test command2: -----------------------]
385s autopkgtest [17:17:11]: test command2:  - - - - - - - - - - results - - - - - - - - - -
385s command2             PASS (superficial)
389s autopkgtest [17:17:15]: test command3: preparing testbed
391s Reading package lists...
392s Building dependency tree...
392s Reading state information...
392s Starting pkgProblemResolver with broken count: 0
392s Starting 2 pkgProblemResolver with broken count: 0
392s Done
393s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
401s autopkgtest [17:17:27]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)"
401s autopkgtest [17:17:27]: test command3: [-----------------------
403s Search pymol scripts in /usr/share/pymol/examples...
403s Processing new directory /usr/share/pymol/examples
403s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
404s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
404s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
404s Skip /usr/share/pymol/examples/cookbook/contact.pml
404s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
404s Skip /usr/share/pymol/examples/cookbook/packing.pml
404s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
404s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
404s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
404s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
404s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
404s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
405s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
405s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
408s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
411s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
412s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
412s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
413s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
413s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
413s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
414s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
414s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
417s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
417s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
418s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
418s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
421s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
421s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
422s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
422s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
422s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
423s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
426s Skip /usr/share/pymol/examples/devel/importing.py
426s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
426s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
427s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
427s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
429s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
429s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
429s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
430s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
430s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
430s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
430s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
431s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
431s Skip /usr/share/pymol/examples/devel/tkwindow.py
431s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
431s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
431s  Copyright (c) Schrodinger, LLC.
431s  All Rights Reserved.
431s  
431s     Created by Warren L. DeLano, Ph.D. 
431s  
431s     PyMOL is user-supported open-source software.  Although some versions
431s     are freely available, PyMOL is not in the public domain.
431s  
431s     If PyMOL is helpful in your work or study, then please volunteer 
431s     support for our ongoing efforts to create open and affordable scientific
431s     software by purchasing a PyMOL Maintenance and/or Support subscription.
431s 
431s     More information can be found at "http://www.pymol.org".
431s  
431s     Enter "help" for a list of commands.
431s     Enter "help <command-name>" for information on a specific command.
431s 
431s  Hit ESC anytime to toggle between text and graphics.
431s 
431s  Detected 8 CPU cores.  Enabled multithreaded rendering.
431s Traceback (most recent call last):
431s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run
431s     run_(path, ns_pymol, ns_pymol)
431s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^
431s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file
431s     execfile(file,global_ns,local_ns)
431s     ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
431s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile
431s     exec(co, global_ns, local_ns)
431s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
431s   File "/usr/share/pymol/examples/devel/webgui01.py", line 7, in <module>
431s     import cgi
431s ModuleNotFoundError: No module named 'cgi'
431s 	not ok - error-related patterns were found in pymol output
431s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
431s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
431s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
431s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
431s  Copyright (c) Schrodinger, LLC.
431s  All Rights Reserved.
431s  
431s     Created by Warren L. DeLano, Ph.D. 
431s  
431s     PyMOL is user-supported open-source software.  Although some versions
431s     are freely available, PyMOL is not in the public domain.
431s  
431s     If PyMOL is helpful in your work or study, then please volunteer 
431s     support for our ongoing efforts to create open and affordable scientific
431s     software by purchasing a PyMOL Maintenance and/or Support subscription.
431s 
431s     More information can be found at "http://www.pymol.org".
431s  
431s     Enter "help" for a list of commands.
431s     Enter "help <command-name>" for information on a specific command.
431s 
431s  Hit ESC anytime to toggle between text and graphics.
431s 
431s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
431s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
431s  Detected 8 CPU cores.  Enabled multithreaded rendering.
431s Traceback (most recent call last):
431s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run
431s     run_(path, ns_pymol, ns_pymol)
431s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^
431s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file
431s     execfile(file,global_ns,local_ns)
431s     ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
431s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile
431s     exec(co, global_ns, local_ns)
431s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
431s   File "/usr/share/pymol/examples/devel/webgui02.py", line 10, in <module>
431s     import cgi
431s ModuleNotFoundError: No module named 'cgi'
432s 	not ok - error-related patterns were found in pymol output
432s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
432s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
432s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
432s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
432s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
432s Processing new directory /usr/share/pymol/examples/chempy
432s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'...
433s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'...
433s Processing new directory /usr/share/pymol/examples/cookbook
433s Skip /usr/share/pymol/examples/cookbook/area_diff.pml
433s Skip /usr/share/pymol/examples/cookbook/contact.pml
433s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
433s Skip /usr/share/pymol/examples/cookbook/packing.pml
433s Skip /usr/share/pymol/examples/cookbook/packsurf.pml
433s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml
433s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml
433s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml
433s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml
433s Processing new directory /usr/share/pymol/examples/devel
433s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'...
433s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'...
433s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'...
437s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'...
440s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'...
440s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'...
440s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'...
442s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'...
442s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'...
442s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'...
442s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'...
443s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'...
446s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'...
446s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'...
446s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'...
446s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'...
450s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'...
450s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'...
450s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'...
450s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'...
451s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'...
451s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'...
455s Skip /usr/share/pymol/examples/devel/importing.py
455s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'...
455s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'...
455s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'...
456s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'...
457s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'...
458s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'...
458s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'...
458s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'...
458s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'...
459s Skip /usr/share/pymol/examples/devel/sd_annotate.pml
459s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'...
459s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'...
459s Skip /usr/share/pymol/examples/devel/tkwindow.py
459s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'...
459s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
459s  Copyright (c) Schrodinger, LLC.
459s  All Rights Reserved.
459s  
459s     Created by Warren L. DeLano, Ph.D. 
459s  
459s     PyMOL is user-supported open-source software.  Although some versions
459s     are freely available, PyMOL is not in the public domain.
459s  
459s     If PyMOL is helpful in your work or study, then please volunteer 
459s     support for our ongoing efforts to create open and affordable scientific
459s     software by purchasing a PyMOL Maintenance and/or Support subscription.
459s 
459s     More information can be found at "http://www.pymol.org".
459s  
459s     Enter "help" for a list of commands.
459s     Enter "help <command-name>" for information on a specific command.
459s 
459s  Hit ESC anytime to toggle between text and graphics.
459s 
459s  Detected 8 CPU cores.  Enabled multithreaded rendering.
459s Traceback (most recent call last):
459s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run
459s     run_(path, ns_pymol, ns_pymol)
459s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^
459s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file
459s     execfile(file,global_ns,local_ns)
459s     ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
459s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile
459s     exec(co, global_ns, local_ns)
459s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
459s   File "/usr/share/pymol/examples/devel/webgui01.py", line 7, in <module>
459s     import cgi
459s ModuleNotFoundError: No module named 'cgi'
459s 	not ok - error-related patterns were found in pymol output
459s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'...
460s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
460s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
460s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
460s  Copyright (c) Schrodinger, LLC.
460s  All Rights Reserved.
460s  
460s     Created by Warren L. DeLano, Ph.D. 
460s  
460s     PyMOL is user-supported open-source software.  Although some versions
460s     are freely available, PyMOL is not in the public domain.
460s  
460s     If PyMOL is helpful in your work or study, then please volunteer 
460s     support for our ongoing efforts to create open and affordable scientific
460s     software by purchasing a PyMOL Maintenance and/or Support subscription.
460s 
460s     More information can be found at "http://www.pymol.org".
460s  
460s     Enter "help" for a list of commands.
460s     Enter "help <command-name>" for information on a specific command.
460s 
460s  Hit ESC anytime to toggle between text and graphics.
460s 
460s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\='
460s   mo = re.search("molid\=([A-Z0-9]+)",self.path)
460s  Detected 8 CPU cores.  Enabled multithreaded rendering.
460s Traceback (most recent call last):
460s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 470, in run
460s     run_(path, ns_pymol, ns_pymol)
460s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^
460s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 519, in run_file
460s     execfile(file,global_ns,local_ns)
460s     ~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
460s   File "/usr/lib/python3/dist-packages/pymol/parsing.py", line 514, in execfile
460s     exec(co, global_ns, local_ns)
460s     ~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
460s   File "/usr/share/pymol/examples/devel/webgui02.py", line 10, in <module>
460s     import cgi
460s ModuleNotFoundError: No module named 'cgi'
460s 	not ok - error-related patterns were found in pymol output
460s Skip /usr/share/pymol/examples/devel/xmlrpc01.py
460s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'...
460s Processing new directory /usr/share/pymol/examples/launching
460s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'...
460s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'...
460s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'...
461s autopkgtest [17:18:27]: test command3: -----------------------]
465s autopkgtest [17:18:31]: test command3:  - - - - - - - - - - results - - - - - - - - - -
465s command3             PASS (superficial)
470s autopkgtest [17:18:36]: test command4: preparing testbed
471s Reading package lists...
472s Building dependency tree...
472s Reading state information...
472s Starting pkgProblemResolver with broken count: 0
472s Starting 2 pkgProblemResolver with broken count: 0
472s Done
473s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
482s autopkgtest [17:18:48]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray
482s autopkgtest [17:18:48]: test command4: [-----------------------
484s Search pymol scripts in /usr/share/pymol/examples/cookbook...
484s Processing new directory /usr/share/pymol/examples/cookbook
484s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'...
485s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'...
487s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml
487s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'...
488s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'...
510s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'...
513s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'...
513s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'...
515s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'...
517s autopkgtest [17:19:23]: test command4: -----------------------]
521s autopkgtest [17:19:27]: test command4:  - - - - - - - - - - results - - - - - - - - - -
521s command4             PASS (superficial)
525s autopkgtest [17:19:31]: test command5: preparing testbed
527s Reading package lists...
528s Building dependency tree...
528s Reading state information...
528s Starting pkgProblemResolver with broken count: 0
528s Starting 2 pkgProblemResolver with broken count: 0
528s Done
529s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
538s autopkgtest [17:19:44]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml)
538s autopkgtest [17:19:44]: test command5: [-----------------------
540s  PyMOL(TM) Molecular Graphics System, Version 3.0.0.
540s  Copyright (c) Schrodinger, LLC.
540s  All Rights Reserved.
540s  
540s     Created by Warren L. DeLano, Ph.D. 
540s  
540s     PyMOL is user-supported open-source software.  Although some versions
540s     are freely available, PyMOL is not in the public domain.
540s  
540s     If PyMOL is helpful in your work or study, then please volunteer 
540s     support for our ongoing efforts to create open and affordable scientific
540s     software by purchasing a PyMOL Maintenance and/or Support subscription.
540s 
540s     More information can be found at "http://www.pymol.org".
540s  
540s     Enter "help" for a list of commands.
540s     Enter "help <command-name>" for information on a specific command.
540s 
540s  Hit ESC anytime to toggle between text and graphics.
540s 
540s  Setting: wizard_prompt_mode set to 3.
540s  Detected 8 CPU cores.  Enabled multithreaded rendering.
540s PyMOL>from pymol.wizard.annotation import load_annotated_sdf
540s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf)
540s PyMOL>wizard annotation
540s PyMOL>set wizard_prompt_mode,3
540s PyMOL>load_annotated_sdf demo.sdf
540s HBA ['[1, 25, 26, 34]\n']
540s HBD ['[20]\n']
540s ACD_NUMBER ['MFCD02681585\n']
540s SCORE ['-222.044\n']
540s MOLID ['MFCD02681585\n']
540s HBA ['[1, 21]\n']
540s HBD ['[]\n']
540s ACD_NUMBER ['MFCD01567969\n']
540s SCORE ['-219.984\n']
540s MOLID ['MFCD01567969\n']
540s HBA ['[1, 24]\n']
540s HBD ['[10, 22]\n']
540s ACD_NUMBER ['MFCD00023789\n']
540s SCORE ['-219.911\n']
540s MOLID ['MFCD00023789\n']
540s HBA ['[1, 11]\n']
540s HBD ['[3]\n']
540s ACD_NUMBER ['MFCD02579443\n']
540s SCORE ['-219.769\n']
540s MOLID ['MFCD02579443\n']
540s HBA ['[1, 11]\n']
540s HBD ['[9]\n']
540s ACD_NUMBER ['MFCD02579410\n']
540s SCORE ['-214.809\n']
540s MOLID ['MFCD02579410\n']
540s HBA ['[1, 20, 22, 27, 32]\n']
540s HBD ['[10, 20]\n']
540s ACD_NUMBER ['MFCD02579135\n']
540s SCORE ['-213.630\n']
540s MOLID ['MFCD02579135\n']
540s HBA ['[1, 11, 14, 21]\n']
540s HBD ['[]\n']
540s ACD_NUMBER ['MFCD02681468\n']
540s SCORE ['-213.462\n']
540s MOLID ['MFCD02681468\n']
540s HBA ['[1, 13, 14, 29]\n']
540s HBD ['[]\n']
540s ACD_NUMBER ['MFCD00141070\n']
540s SCORE ['-213.240\n']
540s MOLID ['MFCD00141070\n']
540s HBA ['[1, 8]\n']
540s HBD ['[]\n']
540s ACD_NUMBER ['MFCD02983625\n']
540s SCORE ['-211.422\n']
540s MOLID ['MFCD02983625\n']
540s HBA ['[1, 11]\n']
540s HBD ['[3, 12]\n']
540s ACD_NUMBER ['MFCD00115818\n']
540s SCORE ['-210.482\n']
540s MOLID ['MFCD00115818\n']
541s autopkgtest [17:19:47]: test command5: -----------------------]
546s command5             PASS (superficial)
546s autopkgtest [17:19:52]: test command5:  - - - - - - - - - - results - - - - - - - - - -
550s autopkgtest [17:19:56]: @@@@@@@@@@@@@@@@@@@@ summary
550s command1             PASS (superficial)
550s command2             PASS (superficial)
550s command3             PASS (superficial)
550s command4             PASS (superficial)
550s command5             PASS (superficial)