0s autopkgtest [16:08:29]: starting date and time: 2024-11-14 16:08:29+0000 0s autopkgtest [16:08:29]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [16:08:29]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.pg9qduwi/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:numpy --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:1.26.4+ds-11ubuntu1 -- lxd -r lxd-armhf-10.145.243.141 lxd-armhf-10.145.243.141:autopkgtest/ubuntu/plucky/armhf 53s autopkgtest [16:09:22]: testbed dpkg architecture: armhf 55s autopkgtest [16:09:24]: testbed apt version: 2.9.8 55s autopkgtest [16:09:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 63s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [966 kB] 63s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [105 kB] 63s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 63s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [112 kB] 63s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [688 kB] 63s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [5036 B] 63s Fetched 1971 kB in 1s (2016 kB/s) 64s Reading package lists... 81s tee: /proc/self/fd/2: Permission denied 102s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 102s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 103s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 104s Reading package lists... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Calculating upgrade... 105s The following packages were automatically installed and are no longer required: 105s libperl5.38t64 perl-modules-5.38 python3-netifaces 105s Use 'apt autoremove' to remove them. 105s The following NEW packages will be installed: 105s libperl5.40 perl-modules-5.40 systemd-cryptsetup 105s The following packages will be upgraded: 105s apport apport-core-dump-handler base-files base-passwd bash-completion 105s dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info 105s install-info iproute2 libarchive13t64 libatomic1 libattr1 105s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 105s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 105s libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libdb5.3t64 105s libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 libevdev2 105s libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 libgnutls30t64 105s libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common 105s libkeyutils1 libldap-common libldap2 liblocale-gettext-perl libmaxminddb0 105s libmnl0 libnetfilter-conntrack3 libnetplan1 libnewt0.52 libnghttp2-14 105s libnspr4 libnss-systemd libnvme1t64 libpam-systemd libpipeline1 libplymouth5 105s libpng16-16t64 libpopt0 libpython3.12-minimal libpython3.12-stdlib 105s libsgutils2-1.46-2 libssh2-1t64 libstdc++6 libsystemd-shared libsystemd0 105s libtext-charwidth-perl libtext-iconv-perl libtraceevent1 105s libtraceevent1-plugin libudev1 libudisks2-0 liburcu8t64 libutempter0 105s libuv1t64 libx11-6 libx11-data libxau6 libxmlb2 mawk motd-news-config nano 105s netplan-generator netplan.io openssh-client openssh-server 105s openssh-sftp-server pastebinit pci.ids perl perl-base plymouth 105s plymouth-theme-ubuntu-text python3-apport python3-certifi 105s python3-cffi-backend python3-configobj python3-gi python3-idna 105s python3-jaraco.functools python3-json-pointer python3-jsonpatch 105s python3-lazr.restfulclient python3-lazr.uri python3-more-itertools 105s python3-netplan python3-newt python3-oauthlib python3-problem-report 105s python3-systemd python3-typeguard python3-urllib3 python3-wadllib 105s python3-zipp python3.12 python3.12-gdbm python3.12-minimal sg3-utils 105s sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv 105s systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny 105s whiptail xxd 106s 141 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 45.4 MB of archives. 106s After this operation, 43.2 MB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B] 106s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB] 106s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB] 106s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB] 106s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 106s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 106s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 106s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 106s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB] 106s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB] 106s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB] 106s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB] 106s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB] 106s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB] 106s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB] 106s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB] 106s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB] 106s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB] 107s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB] 107s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB] 107s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB] 107s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB] 107s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB] 107s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB] 107s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB] 107s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB] 107s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB] 107s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB] 107s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB] 107s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB] 107s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB] 107s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB] 107s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB] 107s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB] 107s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B] 107s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB] 107s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB] 107s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB] 107s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB] 107s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 107s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 107s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB] 107s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB] 107s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 107s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 107s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 107s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB] 107s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB] 107s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 107s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB] 107s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB] 107s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 107s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB] 107s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB] 107s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB] 107s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB] 107s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB] 107s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 107s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 107s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB] 107s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 107s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 107s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 107s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 107s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB] 107s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 107s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B] 107s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB] 107s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 107s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB] 107s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB] 107s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB] 107s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 107s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB] 107s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB] 107s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 107s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 107s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB] 107s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB] 107s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB] 107s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB] 107s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 107s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 107s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB] 107s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B] 107s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB] 107s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB] 107s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB] 107s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB] 107s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB] 107s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB] 108s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB] 108s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 108s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB] 108s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 108s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 108s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 108s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB] 108s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 108s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB] 108s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB] 108s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB] 108s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B] 108s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB] 108s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B] 108s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB] 108s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB] 108s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB] 108s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB] 108s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B] 108s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB] 108s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB] 108s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 108s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 108s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 108s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB] 108s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 108s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB] 109s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB] 109s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB] 109s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 109s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf pastebinit all 1.7.1-1 [14.9 kB] 109s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B] 109s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 109s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB] 109s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB] 109s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB] 109s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 109s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB] 109s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 109s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB] 109s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 109s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB] 109s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-systemd armhf 235-1build5 [44.0 kB] 109s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB] 109s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB] 109s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB] 109s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 109s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 109s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB] 109s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB] 109s Preconfiguring packages ... 109s Fetched 45.4 MB in 3s (13.5 MB/s) 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 110s Preparing to unpack .../motd-news-config_13.5ubuntu3_all.deb ... 110s Unpacking motd-news-config (13.5ubuntu3) over (13.3ubuntu6) ... 110s Preparing to unpack .../base-files_13.5ubuntu3_armhf.deb ... 110s Unpacking base-files (13.5ubuntu3) over (13.3ubuntu6) ... 110s Setting up base-files (13.5ubuntu3) ... 110s Installing new version of config file /etc/issue ... 110s Installing new version of config file /etc/issue.net ... 110s Installing new version of config file /etc/lsb-release ... 111s motd-news.service is a disabled or a static unit not running, not starting it. 111s (Reading database ... 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libblockdev-loop3:armhf (3.2.1-1) ... 129s Setting up systemd (256.5-2ubuntu4) ... 129s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 129s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 129s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 130s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ... 130s Setting up libblockdev3:armhf (3.2.1-1) ... 130s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ... 130s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 130s Setting up libblockdev-part3:armhf (3.2.1-1) ... 130s Setting up sg3-utils-udev (1.46-3ubuntu5) ... 130s update-initramfs: deferring update (trigger activated) 130s Setting up libperl5.40:armhf (5.40.0-7) ... 130s Setting up perl (5.40.0-7) ... 130s Setting up systemd-cryptsetup (256.5-2ubuntu4) ... 130s Setting up libnvme1t64 (1.11-1) ... 130s Setting up systemd-timesyncd (256.5-2ubuntu4) ... 131s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it. 131s Setting up udev (256.5-2ubuntu4) ... 131s Setting up libdpkg-perl (1.22.11ubuntu3) ... 131s Setting up libblockdev-nvme3:armhf (3.2.1-1) ... 131s Setting up libdrm2:armhf (2.4.123-1) ... 131s Setting up whiptail (0.52.24-2ubuntu4) ... 131s Setting up libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) ... 131s Setting up libplymouth5:armhf (24.004.60-1ubuntu11) ... 131s Setting up python3-netplan (1.1.1-1) ... 132s Setting up netplan-generator (1.1.1-1) ... 132s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 132s Setting up systemd-resolved (256.5-2ubuntu4) ... 132s Setting up openssh-sftp-server (1:9.7p1-7ubuntu5) ... 132s Setting up udisks2 (2.10.1-11ubuntu1) ... 132s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 132s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 132s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 132s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 132s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 132s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 132s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 132s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 132s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 132s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 132s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 132s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 132s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied 133s Setting up systemd-sysv (256.5-2ubuntu4) ... 133s Setting up openssh-server (1:9.7p1-7ubuntu5) ... 134s Setting up plymouth (24.004.60-1ubuntu11) ... 134s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 134s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 135s Setting up libfwupd2:armhf (1.9.26-2) ... 135s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ... 135s Setting up dpkg-dev (1.22.11ubuntu3) ... 135s Setting up netplan.io (1.1.1-1) ... 135s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ... 135s update-initramfs: deferring update (trigger activated) 135s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ... 135s Setting up fwupd (1.9.26-2) ... 135s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 135s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 135s fwupd.service is a disabled or a static unit not running, not starting it. 135s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ... 136s Setting up apport (2.30.0-0ubuntu5) ... 136s Installing new version of config file /etc/apport/crashdb.conf ... 137s apport-autoreport.service is a disabled or a static unit not running, not starting it. 137s Processing triggers for dbus (1.14.10-4ubuntu5) ... 137s Processing triggers for shared-mime-info (2.4-5) ... 137s Processing triggers for install-info (7.1.1-1) ... 137s Processing triggers for initramfs-tools (0.142ubuntu34) ... 137s Processing triggers for libc-bin (2.40-1ubuntu3) ... 138s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 138s Processing triggers for man-db (2.12.1-3) ... 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 141s The following packages will be REMOVED: 141s libperl5.38t64* perl-modules-5.38* python3-netifaces* 141s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 141s After this operation, 41.7 MB disk space will be freed. 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61505 files and directories currently installed.) 141s Removing libperl5.38t64:armhf (5.38.2-5) ... 141s Removing perl-modules-5.38 (5.38.2-5) ... 141s Removing python3-netifaces:armhf (0.11.0-2build3) ... 141s Processing triggers for man-db (2.12.1-3) ... 142s Processing triggers for libc-bin (2.40-1ubuntu3) ... 144s autopkgtest [16:10:53]: rebooting testbed after setup commands that affected boot 210s autopkgtest [16:11:59]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 237s autopkgtest [16:12:26]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 256s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (dsc) [2309 B] 256s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (tar) [22.0 MB] 256s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pymol 3.0.0+dfsg-1 (diff) [57.6 kB] 256s gpgv: Signature made Mon Jul 22 19:24:21 2024 UTC 256s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 256s gpgv: issuer "emollier@debian.org" 256s gpgv: Can't check signature: No public key 256s dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1.dsc: no acceptable signature found 257s autopkgtest [16:12:46]: testing package pymol version 3.0.0+dfsg-1 259s autopkgtest [16:12:48]: build not needed 266s autopkgtest [16:12:55]: test command1: preparing testbed 276s Reading package lists... 276s Building dependency tree... 276s Reading state information... 277s Starting pkgProblemResolver with broken count: 0 277s Starting 2 pkgProblemResolver with broken count: 0 277s Done 277s The following additional packages will be installed: 277s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 277s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 277s libdouble-conversion3 libdrm-amdgpu1 libdrm-radeon1 libegl-mesa0 libegl1 277s libfontconfig1 libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri 277s libglapi-mesa libgles2 libglew2.2 libglu1-mesa libglvnd0 libglx-mesa0 277s libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 277s libhdf5-hl-100t64 libice6 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 277s liblapack3 libllvm19 libmd4c0 libmtdev1t64 libnetcdf19t64 libopengl0 277s libpcre2-16-0 libpython3.12t64 libqt5core5t64 libqt5dbus5t64 libqt5designer5 277s libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 277s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 277s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 277s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri2-0 277s libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 277s libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 277s libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 277s libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 libxkbcommon-x11-0 277s libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium pymol pymol-data 277s python3-numpy python3-opengl python3-pymol python3-pyqt5 277s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 277s Suggested packages: 277s cups-common glew-utils libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins 277s libwacom-bin gcc gfortran python-numpy-doc python3-dev python3-pytest 277s libgle3 python3-tk 277s Recommended packages: 277s libgl1-amber-dri qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme 277s qtwayland5 libcups2 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc 277s | libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase mesa-vulkan-drivers 277s | vulkan-icd apbs libglut-dev 278s The following NEW packages will be installed: 278s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 278s fonts-dejavu-mono libaec0 libavahi-client3 libavahi-common-data 278s libavahi-common3 libblas3 libcups2t64 libdouble-conversion3 libdrm-amdgpu1 278s libdrm-radeon1 libegl-mesa0 libegl1 libfontconfig1 libfreetype6 libgbm1 278s libgfortran5 libgl1 libgl1-mesa-dri libglapi-mesa libgles2 libglew2.2 278s libglu1-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 278s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libice6 libinput-bin 278s libinput10 libjpeg-turbo8 libjpeg8 liblapack3 libllvm19 libmd4c0 278s libmtdev1t64 libnetcdf19t64 libopengl0 libpcre2-16-0 libpython3.12t64 278s libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 libqt5help5 278s libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 libqt5sql5t64 278s libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 libsm6 libsz2 libvulkan1 278s libwacom-common libwacom9 libwayland-client0 libwayland-server0 libx11-xcb1 278s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 278s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 278s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 278s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxfixes3 278s libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 mesa-libgallium 278s pymol pymol-data python3-numpy python3-opengl python3-pymol python3-pyqt5 278s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 278s 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. 278s Need to get 70.8 MB/70.8 MB of archives. 278s After this operation, 260 MB of additional disk space will be used. 278s Get:1 /tmp/autopkgtest.NZj71E/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 278s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 278s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 278s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 278s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 278s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 278s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-1.1ubuntu2 [189 kB] 278s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 278s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common-data armhf 0.8-13ubuntu6 [29.7 kB] 278s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common3 armhf 0.8-13ubuntu6 [20.2 kB] 278s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-client3 armhf 0.8-13ubuntu6 [24.2 kB] 278s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 278s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libcups2t64 armhf 2.4.10-1ubuntu2 [239 kB] 278s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf libdouble-conversion3 armhf 3.3.0-1build1 [38.6 kB] 278s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-amdgpu1 armhf 2.4.123-1 [18.9 kB] 278s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-radeon1 armhf 2.4.123-1 [18.1 kB] 278s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-server0 armhf 1.23.0-1 [29.4 kB] 278s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 278s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libglapi-mesa armhf 24.2.3-1ubuntu1 [49.4 kB] 278s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libllvm19 armhf 1:19.1.2-1ubuntu1 [27.8 MB] 279s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B] 279s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-dri2-0 armhf 1.17.0-2 [6868 B] 279s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 279s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 279s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 279s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 279s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libxshmfence1 armhf 1.3-1build5 [4464 B] 279s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf mesa-libgallium armhf 24.2.3-1ubuntu1 [7895 kB] 279s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libgbm1 armhf 24.2.3-1ubuntu1 [28.2 kB] 279s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-client0 armhf 1.23.0-1 [22.7 kB] 279s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 279s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libegl-mesa0 armhf 24.2.3-1ubuntu1 [106 kB] 279s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 279s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libvulkan1 armhf 1.3.296.0-1 [114 kB] 279s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1-mesa-dri armhf 24.2.3-1ubuntu1 [30.8 kB] 279s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 279s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 279s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libxfixes3 armhf 1:6.0.0-2build1 [9038 B] 280s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 280s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libglx-mesa0 armhf 24.2.3-1ubuntu1 [131 kB] 280s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 280s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 280s Get:43 http://ftpmaster.internal/ubuntu plucky/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 280s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 280s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 280s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 280s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 280s Get:48 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 280s Get:49 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 280s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 280s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 280s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libwacom-common all 2.13.0-1 [98.6 kB] 280s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libwacom9 armhf 2.13.0-1 [22.3 kB] 280s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libinput-bin armhf 1.26.2-1 [25.2 kB] 280s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libmtdev1t64 armhf 1.1.6-1.2 [13.2 kB] 280s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libinput10 armhf 1.26.2-1 [119 kB] 280s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 280s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 280s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 280s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf libmd4c0 armhf 0.5.2-2 [38.2 kB] 280s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf libnetcdf19t64 armhf 1:4.9.2-6ubuntu1 [419 kB] 280s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-16-0 armhf 10.42-4ubuntu3 [186 kB] 280s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12t64 armhf 3.12.7-3 [2075 kB] 280s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5core5t64 armhf 5.15.15+dfsg-1ubuntu1 [1765 kB] 280s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5dbus5t64 armhf 5.15.15+dfsg-1ubuntu1 [198 kB] 280s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libegl1 armhf 1.7.0-1build1 [29.8 kB] 280s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libgles2 armhf 1.7.0-1build1 [18.0 kB] 280s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5network5t64 armhf 5.15.15+dfsg-1ubuntu1 [654 kB] 280s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB] 280s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-icccm4 armhf 0.4.2-1 [9840 B] 280s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-util1 armhf 0.4.0-1build3 [9224 B] 280s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-image0 armhf 0.4.0-2build1 [9680 B] 280s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-keysyms1 armhf 0.4.0-1build4 [7260 B] 280s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 280s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render-util0 armhf 0.3.9-1build4 [8648 B] 280s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shape0 armhf 1.17.0-2 [6030 B] 280s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xinerama0 armhf 1.17.0-2 [5212 B] 280s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xinput0 armhf 1.17.0-2 [29.5 kB] 280s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xkb1 armhf 1.17.0-2 [28.8 kB] 280s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libxkbcommon-x11-0 armhf 1.6.0-1build1 [13.8 kB] 280s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 280s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5gui5t64 armhf 5.15.15+dfsg-1ubuntu1 [2971 kB] 280s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5widgets5t64 armhf 5.15.15+dfsg-1ubuntu1 [2261 kB] 280s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5xml5t64 armhf 5.15.15+dfsg-1ubuntu1 [108 kB] 280s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5designer5 armhf 5.15.15-2 [2725 kB] 280s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5sql5t64 armhf 5.15.15+dfsg-1ubuntu1 [108 kB] 280s Get:87 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5help5 armhf 5.15.15-2 [144 kB] 280s Get:88 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5opengl5t64 armhf 5.15.15+dfsg-1ubuntu1 [126 kB] 280s Get:89 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5printsupport5t64 armhf 5.15.15+dfsg-1ubuntu1 [192 kB] 280s Get:90 http://ftpmaster.internal/ubuntu plucky/universe armhf libqt5test5t64 armhf 5.15.15+dfsg-1ubuntu1 [135 kB] 280s Get:91 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-numpy armhf 1:1.26.4+ds-11ubuntu1 [3975 kB] 280s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 280s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf libglu1-mesa armhf 9.0.2-1.1build1 [153 kB] 280s Get:94 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-opengl all 3.1.7+dfsg-1 [612 kB] 280s Get:95 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5.sip armhf 12.15.0-1build1 [58.5 kB] 280s Get:96 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5 armhf 5.15.11+dfsg-1build1 [2206 kB] 280s Get:97 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyqt5.qtopengl armhf 5.15.11+dfsg-1build1 [46.9 kB] 280s Get:98 http://ftpmaster.internal/ubuntu plucky/universe armhf pymol-data all 3.0.0+dfsg-1 [1394 kB] 281s Get:99 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pymol armhf 3.0.0+dfsg-1 [3729 kB] 281s Get:100 http://ftpmaster.internal/ubuntu plucky/universe armhf pymol all 3.0.0+dfsg-1 [126 kB] 281s Fetched 70.8 MB in 3s (23.1 MB/s) 281s Selecting previously unselected package libfreetype6:armhf. 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59565 files and directories currently installed.) 281s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 281s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 281s Selecting previously unselected package fonts-dejavu-mono. 281s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 281s Unpacking fonts-dejavu-mono (2.37-8) ... 281s Selecting previously unselected package fonts-dejavu-core. 281s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 281s Unpacking fonts-dejavu-core (2.37-8) ... 281s Selecting previously unselected package fontconfig-config. 281s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 282s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 282s Selecting previously unselected package libfontconfig1:armhf. 282s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 282s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 282s Selecting previously unselected package fontconfig. 282s Preparing to unpack .../05-fontconfig_2.15.0-1.1ubuntu2_armhf.deb ... 282s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 282s Selecting previously unselected package libaec0:armhf. 282s Preparing to unpack .../06-libaec0_1.1.3-1_armhf.deb ... 282s Unpacking libaec0:armhf (1.1.3-1) ... 282s Selecting previously unselected package libavahi-common-data:armhf. 282s Preparing to unpack .../07-libavahi-common-data_0.8-13ubuntu6_armhf.deb ... 282s Unpacking libavahi-common-data:armhf (0.8-13ubuntu6) ... 282s Selecting previously unselected package libavahi-common3:armhf. 282s Preparing to unpack .../08-libavahi-common3_0.8-13ubuntu6_armhf.deb ... 282s Unpacking libavahi-common3:armhf (0.8-13ubuntu6) ... 282s Selecting previously unselected package libavahi-client3:armhf. 282s Preparing to unpack .../09-libavahi-client3_0.8-13ubuntu6_armhf.deb ... 282s Unpacking libavahi-client3:armhf (0.8-13ubuntu6) ... 282s Selecting previously unselected package libblas3:armhf. 282s Preparing to unpack .../10-libblas3_3.12.0-3build2_armhf.deb ... 282s Unpacking libblas3:armhf (3.12.0-3build2) ... 282s Selecting previously unselected package libcups2t64:armhf. 282s Preparing to unpack .../11-libcups2t64_2.4.10-1ubuntu2_armhf.deb ... 282s Unpacking libcups2t64:armhf (2.4.10-1ubuntu2) ... 282s Selecting previously unselected package libdouble-conversion3:armhf. 282s Preparing to unpack .../12-libdouble-conversion3_3.3.0-1build1_armhf.deb ... 282s Unpacking libdouble-conversion3:armhf (3.3.0-1build1) ... 282s Selecting previously unselected package libdrm-amdgpu1:armhf. 282s Preparing to unpack .../13-libdrm-amdgpu1_2.4.123-1_armhf.deb ... 282s Unpacking libdrm-amdgpu1:armhf (2.4.123-1) ... 282s Selecting previously unselected package libdrm-radeon1:armhf. 282s Preparing to unpack .../14-libdrm-radeon1_2.4.123-1_armhf.deb ... 282s Unpacking libdrm-radeon1:armhf (2.4.123-1) ... 282s Selecting previously unselected package libwayland-server0:armhf. 282s Preparing to unpack .../15-libwayland-server0_1.23.0-1_armhf.deb ... 282s Unpacking libwayland-server0:armhf (1.23.0-1) ... 282s Selecting previously unselected package libxcb-randr0:armhf. 282s Preparing to unpack .../16-libxcb-randr0_1.17.0-2_armhf.deb ... 282s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 282s Selecting previously unselected package libglapi-mesa:armhf. 282s Preparing to unpack .../17-libglapi-mesa_24.2.3-1ubuntu1_armhf.deb ... 282s Unpacking libglapi-mesa:armhf (24.2.3-1ubuntu1) ... 282s Selecting previously unselected package libllvm19:armhf. 282s Preparing to unpack .../18-libllvm19_1%3a19.1.2-1ubuntu1_armhf.deb ... 282s Unpacking libllvm19:armhf (1:19.1.2-1ubuntu1) ... 283s Selecting previously unselected package libx11-xcb1:armhf. 283s Preparing to unpack .../19-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... 283s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... 283s Selecting previously unselected package libxcb-dri2-0:armhf. 283s Preparing to unpack .../20-libxcb-dri2-0_1.17.0-2_armhf.deb ... 283s Unpacking libxcb-dri2-0:armhf (1.17.0-2) ... 283s Selecting previously unselected package libxcb-dri3-0:armhf. 283s Preparing to unpack .../21-libxcb-dri3-0_1.17.0-2_armhf.deb ... 283s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 283s Selecting previously unselected package libxcb-present0:armhf. 283s Preparing to unpack .../22-libxcb-present0_1.17.0-2_armhf.deb ... 283s Unpacking libxcb-present0:armhf (1.17.0-2) ... 283s Selecting previously unselected package libxcb-sync1:armhf. 283s Preparing to unpack .../23-libxcb-sync1_1.17.0-2_armhf.deb ... 283s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 283s Selecting previously unselected package libxcb-xfixes0:armhf. 283s Preparing to unpack .../24-libxcb-xfixes0_1.17.0-2_armhf.deb ... 283s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 283s Selecting previously unselected package libxshmfence1:armhf. 283s Preparing to unpack .../25-libxshmfence1_1.3-1build5_armhf.deb ... 283s Unpacking libxshmfence1:armhf (1.3-1build5) ... 283s Selecting previously unselected package mesa-libgallium:armhf. 283s Preparing to unpack .../26-mesa-libgallium_24.2.3-1ubuntu1_armhf.deb ... 283s Unpacking mesa-libgallium:armhf (24.2.3-1ubuntu1) ... 284s Selecting previously unselected package libgbm1:armhf. 284s Preparing to unpack .../27-libgbm1_24.2.3-1ubuntu1_armhf.deb ... 284s Unpacking libgbm1:armhf (24.2.3-1ubuntu1) ... 284s Selecting previously unselected package libwayland-client0:armhf. 284s Preparing to unpack .../28-libwayland-client0_1.23.0-1_armhf.deb ... 284s Unpacking libwayland-client0:armhf (1.23.0-1) ... 284s Selecting previously unselected package libxcb-shm0:armhf. 284s Preparing to unpack .../29-libxcb-shm0_1.17.0-2_armhf.deb ... 284s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 284s Selecting previously unselected package libegl-mesa0:armhf. 284s Preparing to unpack .../30-libegl-mesa0_24.2.3-1ubuntu1_armhf.deb ... 284s Unpacking libegl-mesa0:armhf (24.2.3-1ubuntu1) ... 284s Selecting previously unselected package libgfortran5:armhf. 284s Preparing to unpack .../31-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 284s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 284s Selecting previously unselected package libvulkan1:armhf. 284s Preparing to unpack .../32-libvulkan1_1.3.296.0-1_armhf.deb ... 284s Unpacking libvulkan1:armhf (1.3.296.0-1) ... 284s Selecting previously unselected package libgl1-mesa-dri:armhf. 284s Preparing to unpack .../33-libgl1-mesa-dri_24.2.3-1ubuntu1_armhf.deb ... 284s Unpacking libgl1-mesa-dri:armhf (24.2.3-1ubuntu1) ... 284s Selecting previously unselected package libglvnd0:armhf. 284s Preparing to unpack .../34-libglvnd0_1.7.0-1build1_armhf.deb ... 284s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 284s Selecting previously unselected package libxcb-glx0:armhf. 284s Preparing to unpack .../35-libxcb-glx0_1.17.0-2_armhf.deb ... 284s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 284s Selecting previously unselected package libxfixes3:armhf. 284s Preparing to unpack .../36-libxfixes3_1%3a6.0.0-2build1_armhf.deb ... 284s Unpacking libxfixes3:armhf (1:6.0.0-2build1) ... 284s Selecting previously unselected package libxxf86vm1:armhf. 284s Preparing to unpack .../37-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 284s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 284s Selecting previously unselected package libglx-mesa0:armhf. 284s Preparing to unpack .../38-libglx-mesa0_24.2.3-1ubuntu1_armhf.deb ... 284s Unpacking libglx-mesa0:armhf (24.2.3-1ubuntu1) ... 284s Selecting previously unselected package libglx0:armhf. 284s Preparing to unpack .../39-libglx0_1.7.0-1build1_armhf.deb ... 284s Unpacking libglx0:armhf (1.7.0-1build1) ... 284s Selecting previously unselected package libgl1:armhf. 284s Preparing to unpack .../40-libgl1_1.7.0-1build1_armhf.deb ... 284s Unpacking libgl1:armhf (1.7.0-1build1) ... 284s Selecting previously unselected package libglew2.2:armhf. 284s Preparing to unpack .../41-libglew2.2_2.2.0-4build1_armhf.deb ... 284s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 284s Selecting previously unselected package libgomp1:armhf. 284s Preparing to unpack .../42-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 284s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 284s Selecting previously unselected package libgraphite2-3:armhf. 284s Preparing to unpack .../43-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 284s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 284s Selecting previously unselected package libharfbuzz0b:armhf. 284s Preparing to unpack .../44-libharfbuzz0b_10.0.1-1_armhf.deb ... 284s Unpacking libharfbuzz0b:armhf (10.0.1-1) ... 284s Selecting previously unselected package libsz2:armhf. 284s Preparing to unpack .../45-libsz2_1.1.3-1_armhf.deb ... 284s Unpacking libsz2:armhf (1.1.3-1) ... 284s Selecting previously unselected package libhdf5-103-1t64:armhf. 284s Preparing to unpack .../46-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 284s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 284s Selecting previously unselected package libhdf5-hl-100t64:armhf. 284s Preparing to unpack .../47-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 284s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 285s Selecting previously unselected package x11-common. 285s Preparing to unpack .../48-x11-common_1%3a7.7+23ubuntu3_all.deb ... 285s Unpacking x11-common (1:7.7+23ubuntu3) ... 285s Selecting previously unselected package libice6:armhf. 285s Preparing to unpack .../49-libice6_2%3a1.1.1-1_armhf.deb ... 285s Unpacking libice6:armhf (2:1.1.1-1) ... 285s Selecting previously unselected package libwacom-common. 285s Preparing to unpack .../50-libwacom-common_2.13.0-1_all.deb ... 285s Unpacking libwacom-common (2.13.0-1) ... 285s Selecting previously unselected package libwacom9:armhf. 285s Preparing to unpack .../51-libwacom9_2.13.0-1_armhf.deb ... 285s Unpacking libwacom9:armhf (2.13.0-1) ... 285s Selecting previously unselected package libinput-bin. 285s Preparing to unpack .../52-libinput-bin_1.26.2-1_armhf.deb ... 285s Unpacking libinput-bin (1.26.2-1) ... 285s Selecting previously unselected package libmtdev1t64:armhf. 285s Preparing to unpack .../53-libmtdev1t64_1.1.6-1.2_armhf.deb ... 285s Unpacking libmtdev1t64:armhf (1.1.6-1.2) ... 285s Selecting previously unselected package libinput10:armhf. 285s Preparing to unpack .../54-libinput10_1.26.2-1_armhf.deb ... 285s Unpacking libinput10:armhf (1.26.2-1) ... 285s Selecting previously unselected package libjpeg-turbo8:armhf. 285s Preparing to unpack .../55-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 285s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 285s Selecting previously unselected package libjpeg8:armhf. 285s Preparing to unpack .../56-libjpeg8_8c-2ubuntu11_armhf.deb ... 285s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 285s Selecting previously unselected package liblapack3:armhf. 285s Preparing to unpack .../57-liblapack3_3.12.0-3build2_armhf.deb ... 285s Unpacking liblapack3:armhf (3.12.0-3build2) ... 285s Selecting previously unselected package libmd4c0:armhf. 285s Preparing to unpack .../58-libmd4c0_0.5.2-2_armhf.deb ... 285s Unpacking libmd4c0:armhf (0.5.2-2) ... 285s Selecting previously unselected package libnetcdf19t64:armhf. 285s Preparing to unpack .../59-libnetcdf19t64_1%3a4.9.2-6ubuntu1_armhf.deb ... 285s Unpacking libnetcdf19t64:armhf (1:4.9.2-6ubuntu1) ... 285s Selecting previously unselected package libpcre2-16-0:armhf. 285s Preparing to unpack .../60-libpcre2-16-0_10.42-4ubuntu3_armhf.deb ... 285s Unpacking libpcre2-16-0:armhf (10.42-4ubuntu3) ... 285s Selecting previously unselected package libpython3.12t64:armhf. 285s Preparing to unpack .../61-libpython3.12t64_3.12.7-3_armhf.deb ... 285s Unpacking libpython3.12t64:armhf (3.12.7-3) ... 285s Selecting previously unselected package libqt5core5t64:armhf. 285s Preparing to unpack .../62-libqt5core5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 285s Unpacking libqt5core5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 285s Selecting previously unselected package libqt5dbus5t64:armhf. 285s Preparing to unpack .../63-libqt5dbus5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 285s Unpacking libqt5dbus5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 285s Selecting previously unselected package libegl1:armhf. 285s Preparing to unpack .../64-libegl1_1.7.0-1build1_armhf.deb ... 285s Unpacking libegl1:armhf (1.7.0-1build1) ... 285s Selecting previously unselected package libgles2:armhf. 285s Preparing to unpack .../65-libgles2_1.7.0-1build1_armhf.deb ... 285s Unpacking libgles2:armhf (1.7.0-1build1) ... 285s Selecting previously unselected package libqt5network5t64:armhf. 285s Preparing to unpack .../66-libqt5network5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 285s Unpacking libqt5network5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 285s Selecting previously unselected package libsm6:armhf. 285s Preparing to unpack .../67-libsm6_2%3a1.2.4-1_armhf.deb ... 285s Unpacking libsm6:armhf (2:1.2.4-1) ... 285s Selecting previously unselected package libxcb-icccm4:armhf. 285s Preparing to unpack .../68-libxcb-icccm4_0.4.2-1_armhf.deb ... 285s Unpacking libxcb-icccm4:armhf (0.4.2-1) ... 286s Selecting previously unselected package libxcb-util1:armhf. 286s Preparing to unpack .../69-libxcb-util1_0.4.0-1build3_armhf.deb ... 286s Unpacking libxcb-util1:armhf (0.4.0-1build3) ... 286s Selecting previously unselected package libxcb-image0:armhf. 286s Preparing to unpack .../70-libxcb-image0_0.4.0-2build1_armhf.deb ... 286s Unpacking libxcb-image0:armhf (0.4.0-2build1) ... 286s Selecting previously unselected package libxcb-keysyms1:armhf. 286s Preparing to unpack .../71-libxcb-keysyms1_0.4.0-1build4_armhf.deb ... 286s Unpacking libxcb-keysyms1:armhf (0.4.0-1build4) ... 286s Selecting previously unselected package libxcb-render0:armhf. 286s Preparing to unpack .../72-libxcb-render0_1.17.0-2_armhf.deb ... 286s Unpacking libxcb-render0:armhf (1.17.0-2) ... 286s Selecting previously unselected package libxcb-render-util0:armhf. 286s Preparing to unpack .../73-libxcb-render-util0_0.3.9-1build4_armhf.deb ... 286s Unpacking libxcb-render-util0:armhf (0.3.9-1build4) ... 286s Selecting previously unselected package libxcb-shape0:armhf. 286s Preparing to unpack .../74-libxcb-shape0_1.17.0-2_armhf.deb ... 286s Unpacking libxcb-shape0:armhf (1.17.0-2) ... 286s Selecting previously unselected package libxcb-xinerama0:armhf. 286s Preparing to unpack .../75-libxcb-xinerama0_1.17.0-2_armhf.deb ... 286s Unpacking libxcb-xinerama0:armhf (1.17.0-2) ... 286s Selecting previously unselected package libxcb-xinput0:armhf. 286s Preparing to unpack .../76-libxcb-xinput0_1.17.0-2_armhf.deb ... 286s Unpacking libxcb-xinput0:armhf (1.17.0-2) ... 286s Selecting previously unselected package libxcb-xkb1:armhf. 286s Preparing to unpack .../77-libxcb-xkb1_1.17.0-2_armhf.deb ... 286s Unpacking libxcb-xkb1:armhf (1.17.0-2) ... 286s Selecting previously unselected package libxkbcommon-x11-0:armhf. 286s Preparing to unpack .../78-libxkbcommon-x11-0_1.6.0-1build1_armhf.deb ... 286s Unpacking libxkbcommon-x11-0:armhf (1.6.0-1build1) ... 286s Selecting previously unselected package libxrender1:armhf. 286s Preparing to unpack .../79-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 286s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 286s Selecting previously unselected package libqt5gui5t64:armhf. 286s Preparing to unpack .../80-libqt5gui5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 286s Unpacking libqt5gui5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 286s Selecting previously unselected package libqt5widgets5t64:armhf. 286s Preparing to unpack .../81-libqt5widgets5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 286s Unpacking libqt5widgets5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 286s Selecting previously unselected package libqt5xml5t64:armhf. 286s Preparing to unpack .../82-libqt5xml5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 286s Unpacking libqt5xml5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 286s Selecting previously unselected package libqt5designer5:armhf. 286s Preparing to unpack .../83-libqt5designer5_5.15.15-2_armhf.deb ... 286s Unpacking libqt5designer5:armhf (5.15.15-2) ... 286s Selecting previously unselected package libqt5sql5t64:armhf. 286s Preparing to unpack .../84-libqt5sql5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 286s Unpacking libqt5sql5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 286s Selecting previously unselected package libqt5help5:armhf. 286s Preparing to unpack .../85-libqt5help5_5.15.15-2_armhf.deb ... 286s Unpacking libqt5help5:armhf (5.15.15-2) ... 286s Selecting previously unselected package libqt5opengl5t64:armhf. 286s Preparing to unpack .../86-libqt5opengl5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 286s Unpacking libqt5opengl5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 286s Selecting previously unselected package libqt5printsupport5t64:armhf. 286s Preparing to unpack .../87-libqt5printsupport5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 286s Unpacking libqt5printsupport5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 286s Selecting previously unselected package libqt5test5t64:armhf. 286s Preparing to unpack .../88-libqt5test5t64_5.15.15+dfsg-1ubuntu1_armhf.deb ... 286s Unpacking libqt5test5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 286s Selecting previously unselected package python3-numpy. 286s Preparing to unpack .../89-python3-numpy_1%3a1.26.4+ds-11ubuntu1_armhf.deb ... 286s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 287s Selecting previously unselected package libopengl0:armhf. 287s Preparing to unpack .../90-libopengl0_1.7.0-1build1_armhf.deb ... 287s Unpacking libopengl0:armhf (1.7.0-1build1) ... 287s Selecting previously unselected package libglu1-mesa:armhf. 287s Preparing to unpack .../91-libglu1-mesa_9.0.2-1.1build1_armhf.deb ... 287s Unpacking libglu1-mesa:armhf (9.0.2-1.1build1) ... 287s Selecting previously unselected package python3-opengl. 287s Preparing to unpack .../92-python3-opengl_3.1.7+dfsg-1_all.deb ... 287s Unpacking python3-opengl (3.1.7+dfsg-1) ... 287s Selecting previously unselected package python3-pyqt5.sip. 287s Preparing to unpack .../93-python3-pyqt5.sip_12.15.0-1build1_armhf.deb ... 287s Unpacking python3-pyqt5.sip (12.15.0-1build1) ... 287s Selecting previously unselected package python3-pyqt5. 287s Preparing to unpack .../94-python3-pyqt5_5.15.11+dfsg-1build1_armhf.deb ... 287s Unpacking python3-pyqt5 (5.15.11+dfsg-1build1) ... 287s 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... 288s Setting up libllvm19:armhf (1:19.1.2-1ubuntu1) ... 288s Setting up libwayland-server0:armhf (1.23.0-1) ... 288s Setting up libx11-xcb1:armhf (2:1.8.10-2) ... 288s Setting up libdouble-conversion3:armhf (3.3.0-1build1) ... 288s Setting up libxcb-xfixes0:armhf (1.17.0-2) ... 288s Setting up libxcb-xinput0:armhf (1.17.0-2) ... 288s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 288s Setting up libxcb-render0:armhf (1.17.0-2) ... 288s Setting up libdrm-radeon1:armhf (2.4.123-1) ... 288s Setting up libglvnd0:armhf (1.7.0-1build1) ... 288s Setting up libxcb-glx0:armhf (1.17.0-2) ... 288s Setting up libxcb-keysyms1:armhf (0.4.0-1build4) ... 288s Setting up libxcb-shape0:armhf (1.17.0-2) ... 288s Setting up x11-common (1:7.7+23ubuntu3) ... 288s Setting up libxcb-render-util0:armhf (0.3.9-1build4) ... 288s Setting up libxcb-shm0:armhf (1.17.0-2) ... 288s Setting up libxcb-icccm4:armhf (0.4.2-1) ... 288s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 288s Setting up libpcre2-16-0:armhf (10.42-4ubuntu3) ... 288s Setting up libaec0:armhf (1.1.3-1) ... 288s Setting up libopengl0:armhf (1.7.0-1build1) ... 288s Setting up libxcb-util1:armhf (0.4.0-1build3) ... 288s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ... 288s Setting up libxcb-xkb1:armhf (1.17.0-2) ... 288s Setting up libxcb-image0:armhf (0.4.0-2build1) ... 288s Setting up libxcb-present0:armhf (1.17.0-2) ... 288s Setting up libpython3.12t64:armhf (3.12.7-3) ... 288s Setting up libqt5core5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 288s Setting up libblas3:armhf (3.12.0-3build2) ... 288s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 288s Setting up libxcb-xinerama0:armhf (1.17.0-2) ... 288s Setting up libgles2:armhf (1.7.0-1build1) ... 288s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 288s Setting up libxfixes3:armhf (1:6.0.0-2build1) ... 288s Setting up libxcb-sync1:armhf (1.17.0-2) ... 288s Setting up libavahi-common-data:armhf (0.8-13ubuntu6) ... 288s Setting up pymol-data (3.0.0+dfsg-1) ... 288s Setting up libxkbcommon-x11-0:armhf (1.6.0-1build1) ... 288s Setting up fonts-dejavu-mono (2.37-8) ... 288s Setting up fonts-dejavu-core (2.37-8) ... 288s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 288s Setting up libglapi-mesa:armhf (24.2.3-1ubuntu1) ... 288s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 288s Setting up libvulkan1:armhf (1.3.296.0-1) ... 288s Setting up libxcb-dri2-0:armhf (1.17.0-2) ... 288s Setting up python3-pyqt5.sip (12.15.0-1build1) ... 288s Setting up libmtdev1t64:armhf (1.1.6-1.2) ... 288s Setting up libxshmfence1:armhf (1.3-1build5) ... 288s Setting up libxcb-randr0:armhf (1.17.0-2) ... 288s Setting up libqt5sql5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 288s Setting up libmd4c0:armhf (0.5.2-2) ... 288s Setting up libharfbuzz0b:armhf (10.0.1-1) ... 288s Setting up libglu1-mesa:armhf (9.0.2-1.1build1) ... 288s Setting up libsz2:armhf (1.1.3-1) ... 288s Setting up libdrm-amdgpu1:armhf (2.4.123-1) ... 288s Setting up libwacom-common (2.13.0-1) ... 288s Setting up libwayland-client0:armhf (1.23.0-1) ... 288s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 288s Setting up libice6:armhf (2:1.1.1-1) ... 288s Setting up mesa-libgallium:armhf (24.2.3-1ubuntu1) ... 288s Setting up liblapack3:armhf (3.12.0-3build2) ... 288s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 288s Setting up libqt5dbus5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 288s Setting up libgbm1:armhf (24.2.3-1ubuntu1) ... 288s Setting up libwacom9:armhf (2.13.0-1) ... 288s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 288s Setting up libgl1-mesa-dri:armhf (24.2.3-1ubuntu1) ... 288s Setting up libqt5network5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 288s Setting up libavahi-common3:armhf (0.8-13ubuntu6) ... 288s Setting up libqt5xml5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 288s Setting up libqt5test5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 288s Setting up libinput-bin (1.26.2-1) ... 288s Setting up libegl-mesa0:armhf (24.2.3-1ubuntu1) ... 288s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 291s Setting up libegl1:armhf (1.7.0-1build1) ... 291s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 291s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 291s Setting up libsm6:armhf (2:1.2.4-1) ... 291s Setting up libavahi-client3:armhf (0.8-13ubuntu6) ... 291s Setting up libinput10:armhf (1.26.2-1) ... 291s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 291s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 293s Regenerating fonts cache... done. 293s Setting up libnetcdf19t64:armhf (1:4.9.2-6ubuntu1) ... 293s Setting up libglx-mesa0:armhf (24.2.3-1ubuntu1) ... 293s Setting up libglx0:armhf (1.7.0-1build1) ... 293s Setting up libqt5gui5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 293s Setting up libgl1:armhf (1.7.0-1build1) ... 293s Setting up libglew2.2:armhf (2.2.0-4build1) ... 293s Setting up libcups2t64:armhf (2.4.10-1ubuntu2) ... 293s Setting up libqt5widgets5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 293s Setting up python3-opengl (3.1.7+dfsg-1) ... 293s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ ' 293s '''OpenGL extension AMD.vertex_shader_tessellator 296s Setting up libqt5help5:armhf (5.15.15-2) ... 296s Setting up libqt5opengl5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 296s Setting up libqt5printsupport5t64:armhf (5.15.15+dfsg-1ubuntu1) ... 296s Setting up libqt5designer5:armhf (5.15.15-2) ... 296s Setting up python3-pyqt5 (5.15.11+dfsg-1build1) ... 296s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1build1) ... 296s Setting up python3-pymol (3.0.0+dfsg-1) ... 297s Setting up pymol (3.0.0+dfsg-1) ... 297s Setting up autopkgtest-satdep (0) ... 297s Processing triggers for man-db (2.12.1-3) ... 297s Processing triggers for udev (256.5-2ubuntu4) ... 298s Processing triggers for libc-bin (2.40-1ubuntu3) ... 319s (Reading database ... 65824 files and directories currently installed.) 319s Removing autopkgtest-satdep (0) ... 325s autopkgtest [16:13:54]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 325s autopkgtest [16:13:54]: test command1: [----------------------- 327s Search pymol scripts in /tmp/autopkgtest.NZj71E/build.ERG/src/examples... 327s Processing new directory /tmp/autopkgtest.NZj71E/build.ERG/src/examples 327s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/chempy/generate_amber.py'... 327s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/chempy/generate_mmff.py'... 327s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/area_diff.pml'... 328s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/build_peptide.py'... 328s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/contact.pml 328s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/dali.py 328s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/density.pml 328s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/groel_es.pml 328s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/multiclip_ray.pml 328s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/packing.pml 328s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/packsurf.pml 328s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/ref_frame.pml 328s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/ribosome.pml 328s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/scenes2movie.pml 328s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/seq_match_sele.pml'... 330s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/ss_xfer.pml 330s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/symsph.py'... 330s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/brick01.py'... 331s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo01.py'... 331s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo02.py'... 334s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo03.py'... 337s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo04.py'... 338s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo05.py'... 338s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo06.py'... 339s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo07.py'... 339s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo08.py'... 339s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo_3Dtext01.py'... 340s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo_axes.py'... 340s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo_label_hack.py'... 343s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo_plane.py'... 343s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/chempy_model01.py'... 344s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/chempy_model02.py'... 344s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/chempy_model03.py'... 347s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/click_ordered_list.py'... 347s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/count_molecules.py'... 348s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/extend_demo01.py'... 348s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/gl01.py'... 348s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/gl02.py'... 349s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/gl03.py'... 352s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/importing.py 352s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/link_demo.py'... 352s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/membrane.py'... 353s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/mutate01.pml'... 353s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/mutate02.py'... 355s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/my_ext_gui.py'... 355s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/particle01.py'... 355s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/particle02.py'... 356s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/pick_wiz.py'... 356s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/povray01.py 356s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/scenes_to_movie01.pml'... 356s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/sd_annotate.pml 356s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/sele_wiz.py'... 356s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/start_pymol.py 356s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/syncmol.py'... 357s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/tkwindow.py 357s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/webgui01.py'... 357s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/webgui02.py'... 357s /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 357s mo = re.search("molid\=([A-Z0-9]+)",self.path) 357s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/xmlrpc01.py 357s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/xmlrpc02.py'... 357s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/launching/launch_demo.py'... 358s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/launching/launch_viewer1.py'... 358s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/launching/launch_viewer2.py'... 358s Processing new directory /tmp/autopkgtest.NZj71E/build.ERG/src/examples/chempy 358s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/chempy/generate_amber.py'... 358s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/chempy/generate_mmff.py'... 358s Processing new directory /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook 358s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/area_diff.pml'... 359s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/build_peptide.py'... 359s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/contact.pml 359s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/dali.py 359s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/density.pml 359s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/groel_es.pml 359s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/multiclip_ray.pml 359s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/packing.pml 359s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/packsurf.pml 359s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/ref_frame.pml 359s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/ribosome.pml 359s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/scenes2movie.pml 360s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/seq_match_sele.pml'... 361s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/ss_xfer.pml 361s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/cookbook/symsph.py'... 362s Processing new directory /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel 362s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/brick01.py'... 362s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo01.py'... 362s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo02.py'... 365s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo03.py'... 369s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo04.py'... 369s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo05.py'... 369s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo06.py'... 370s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo07.py'... 371s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo08.py'... 371s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo_3Dtext01.py'... 371s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo_axes.py'... 371s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo_label_hack.py'... 374s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/cgo_plane.py'... 375s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/chempy_model01.py'... 375s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/chempy_model02.py'... 375s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/chempy_model03.py'... 378s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/click_ordered_list.py'... 379s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/count_molecules.py'... 379s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/extend_demo01.py'... 379s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/gl01.py'... 379s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/gl02.py'... 380s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/gl03.py'... 383s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/importing.py 383s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/link_demo.py'... 384s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/membrane.py'... 384s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/mutate01.pml'... 385s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/mutate02.py'... 386s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/my_ext_gui.py'... 387s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/particle01.py'... 387s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/particle02.py'... 387s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/pick_wiz.py'... 388s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/povray01.py 388s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/scenes_to_movie01.pml'... 388s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/sd_annotate.pml 388s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/sele_wiz.py'... 388s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/start_pymol.py 388s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/syncmol.py'... 388s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/tkwindow.py 388s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/webgui01.py'... 388s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/webgui02.py'... 389s /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 389s mo = re.search("molid\=([A-Z0-9]+)",self.path) 389s Skip /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/xmlrpc01.py 389s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/devel/xmlrpc02.py'... 389s Processing new directory /tmp/autopkgtest.NZj71E/build.ERG/src/examples/launching 389s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/launching/launch_demo.py'... 389s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/launching/launch_viewer1.py'... 389s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/examples/launching/launch_viewer2.py'... 390s autopkgtest [16:14:59]: test command1: -----------------------] 394s autopkgtest [16:15:03]: test command1: - - - - - - - - - - results - - - - - - - - - - 394s command1 PASS (superficial) 399s autopkgtest [16:15:07]: test command2: preparing testbed 410s Reading package lists... 410s Building dependency tree... 410s Reading state information... 410s Starting pkgProblemResolver with broken count: 0 410s Starting 2 pkgProblemResolver with broken count: 0 410s Done 411s The following NEW packages will be installed: 411s autopkgtest-satdep 411s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 411s Need to get 0 B/704 B of archives. 411s After this operation, 0 B of additional disk space will be used. 411s Get:1 /tmp/autopkgtest.NZj71E/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 412s Selecting previously unselected package autopkgtest-satdep. 412s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65824 files and directories currently installed.) 412s Preparing to unpack .../2-autopkgtest-satdep.deb ... 412s Unpacking autopkgtest-satdep (0) ... 412s Setting up autopkgtest-satdep (0) ... 421s (Reading database ... 65824 files and directories currently installed.) 421s Removing autopkgtest-satdep (0) ... 427s autopkgtest [16:15:36]: test command2: sh debian/tests/call-pymol-scripts data/demo 427s autopkgtest [16:15:36]: test command2: [----------------------- 429s Search pymol scripts in /tmp/autopkgtest.NZj71E/build.ERG/src/data/demo... 429s Processing new directory /tmp/autopkgtest.NZj71E/build.ERG/src/data/demo 429s Run 'pymol -c /tmp/autopkgtest.NZj71E/build.ERG/src/data/demo/cgo03.py'... 433s autopkgtest [16:15:42]: test command2: -----------------------] 437s autopkgtest [16:15:46]: test command2: - - - - - - - - - - results - - - - - - - - - - 437s command2 PASS (superficial) 440s autopkgtest [16:15:49]: test command3: preparing testbed 452s Reading package lists... 452s Building dependency tree... 452s Reading state information... 453s Starting pkgProblemResolver with broken count: 0 453s Starting 2 pkgProblemResolver with broken count: 0 453s Done 453s The following NEW packages will be installed: 453s autopkgtest-satdep 454s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 454s Need to get 0 B/700 B of archives. 454s After this operation, 0 B of additional disk space will be used. 454s Get:1 /tmp/autopkgtest.NZj71E/3-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [700 B] 454s Selecting previously unselected package autopkgtest-satdep. 454s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65824 files and directories currently installed.) 454s Preparing to unpack .../3-autopkgtest-satdep.deb ... 454s Unpacking autopkgtest-satdep (0) ... 454s Setting up autopkgtest-satdep (0) ... 464s (Reading database ... 65824 files and directories currently installed.) 464s Removing autopkgtest-satdep (0) ... 470s autopkgtest [16:16:19]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 470s autopkgtest [16:16:19]: test command3: [----------------------- 472s Search pymol scripts in /usr/share/pymol/examples... 472s Processing new directory /usr/share/pymol/examples 472s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 472s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 472s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 472s Skip /usr/share/pymol/examples/cookbook/contact.pml 472s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 472s Skip /usr/share/pymol/examples/cookbook/packing.pml 472s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 472s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 472s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 472s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 472s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 472s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 473s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 473s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 476s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 480s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 480s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 480s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 481s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 482s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 482s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 482s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 482s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 485s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 486s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 486s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 486s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 490s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 490s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 490s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 490s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 491s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 491s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 495s Skip /usr/share/pymol/examples/devel/importing.py 495s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 495s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 495s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 496s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 497s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 498s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 498s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 498s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 499s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 499s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 499s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 499s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 499s Skip /usr/share/pymol/examples/devel/tkwindow.py 499s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 499s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 500s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 500s mo = re.search("molid\=([A-Z0-9]+)",self.path) 500s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 500s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 500s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 500s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 500s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 501s Processing new directory /usr/share/pymol/examples/chempy 501s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 501s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 501s Processing new directory /usr/share/pymol/examples/cookbook 501s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 501s Skip /usr/share/pymol/examples/cookbook/contact.pml 501s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 501s Skip /usr/share/pymol/examples/cookbook/packing.pml 501s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 501s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 501s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 501s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 501s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 501s Processing new directory /usr/share/pymol/examples/devel 501s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 501s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 502s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 505s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 508s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 509s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 509s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 510s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 510s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 511s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 511s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 511s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 514s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 514s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 515s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 515s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 518s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 519s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 519s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 520s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 520s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 520s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 524s Skip /usr/share/pymol/examples/devel/importing.py 524s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 524s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 524s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 525s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 527s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 527s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 527s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 528s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 528s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 528s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 528s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 528s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 528s Skip /usr/share/pymol/examples/devel/tkwindow.py 528s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 529s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 529s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 529s mo = re.search("molid\=([A-Z0-9]+)",self.path) 529s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 529s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 529s Processing new directory /usr/share/pymol/examples/launching 529s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 529s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 529s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 530s autopkgtest [16:17:19]: test command3: -----------------------] 534s autopkgtest [16:17:23]: test command3: - - - - - - - - - - results - - - - - - - - - - 534s command3 PASS (superficial) 538s autopkgtest [16:17:27]: test command4: preparing testbed 548s Reading package lists... 548s Building dependency tree... 548s Reading state information... 549s Starting pkgProblemResolver with broken count: 0 549s Starting 2 pkgProblemResolver with broken count: 0 549s Done 550s The following NEW packages will be installed: 550s autopkgtest-satdep 550s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 550s Need to get 0 B/704 B of archives. 550s After this operation, 0 B of additional disk space will be used. 550s Get:1 /tmp/autopkgtest.NZj71E/4-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 550s Selecting previously unselected package autopkgtest-satdep. 550s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65824 files and directories currently installed.) 550s Preparing to unpack .../4-autopkgtest-satdep.deb ... 550s Unpacking autopkgtest-satdep (0) ... 550s Setting up autopkgtest-satdep (0) ... 559s (Reading database ... 65824 files and directories currently installed.) 559s Removing autopkgtest-satdep (0) ... 565s autopkgtest [16:17:54]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 565s autopkgtest [16:17:54]: test command4: [----------------------- 567s Search pymol scripts in /usr/share/pymol/examples/cookbook... 567s Processing new directory /usr/share/pymol/examples/cookbook 567s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 568s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 569s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 569s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 570s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 586s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 588s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 589s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 591s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 592s autopkgtest [16:18:21]: test command4: -----------------------] 596s command4 PASS (superficial) 596s autopkgtest [16:18:25]: test command4: - - - - - - - - - - results - - - - - - - - - - 600s autopkgtest [16:18:29]: test command5: preparing testbed 610s Reading package lists... 610s Building dependency tree... 610s Reading state information... 611s Starting pkgProblemResolver with broken count: 0 611s Starting 2 pkgProblemResolver with broken count: 0 611s Done 612s The following NEW packages will be installed: 612s autopkgtest-satdep 612s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 612s Need to get 0 B/704 B of archives. 612s After this operation, 0 B of additional disk space will be used. 612s Get:1 /tmp/autopkgtest.NZj71E/5-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 612s Selecting previously unselected package autopkgtest-satdep. 612s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 65824 files and directories currently installed.) 612s Preparing to unpack .../5-autopkgtest-satdep.deb ... 612s Unpacking autopkgtest-satdep (0) ... 612s Setting up autopkgtest-satdep (0) ... 622s (Reading database ... 65824 files and directories currently installed.) 622s Removing autopkgtest-satdep (0) ... 627s autopkgtest [16:18:56]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 627s autopkgtest [16:18:56]: test command5: [----------------------- 630s PyMOL(TM) Molecular Graphics System, Version 3.0.0. 630s Copyright (c) Schrodinger, LLC. 630s All Rights Reserved. 630s 630s Created by Warren L. DeLano, Ph.D. 630s 630s PyMOL is user-supported open-source software. Although some versions 630s are freely available, PyMOL is not in the public domain. 630s 630s If PyMOL is helpful in your work or study, then please volunteer 630s support for our ongoing efforts to create open and affordable scientific 630s software by purchasing a PyMOL Maintenance and/or Support subscription. 630s 630s More information can be found at "http://www.pymol.org". 630s 630s Enter "help" for a list of commands. 630s Enter "help " for information on a specific command. 630s 630s Hit ESC anytime to toggle between text and graphics. 630s 630s Setting: wizard_prompt_mode set to 3. 630s Detected 8 CPU cores. Enabled multithreaded rendering. 630s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 630s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 630s PyMOL>wizard annotation 630s PyMOL>set wizard_prompt_mode,3 630s PyMOL>load_annotated_sdf demo.sdf 630s HBA ['[1, 25, 26, 34]\n'] 630s HBD ['[20]\n'] 630s ACD_NUMBER ['MFCD02681585\n'] 630s SCORE ['-222.044\n'] 630s MOLID ['MFCD02681585\n'] 630s HBA ['[1, 21]\n'] 630s HBD ['[]\n'] 630s ACD_NUMBER ['MFCD01567969\n'] 630s SCORE ['-219.984\n'] 630s MOLID ['MFCD01567969\n'] 630s HBA ['[1, 24]\n'] 630s HBD ['[10, 22]\n'] 630s ACD_NUMBER ['MFCD00023789\n'] 630s SCORE ['-219.911\n'] 630s MOLID ['MFCD00023789\n'] 630s HBA ['[1, 11]\n'] 630s HBD ['[3]\n'] 630s ACD_NUMBER ['MFCD02579443\n'] 630s SCORE ['-219.769\n'] 630s MOLID ['MFCD02579443\n'] 630s HBA ['[1, 11]\n'] 630s HBD ['[9]\n'] 630s ACD_NUMBER ['MFCD02579410\n'] 630s SCORE ['-214.809\n'] 630s MOLID ['MFCD02579410\n'] 630s HBA ['[1, 20, 22, 27, 32]\n'] 630s HBD ['[10, 20]\n'] 630s ACD_NUMBER ['MFCD02579135\n'] 630s SCORE ['-213.630\n'] 630s MOLID ['MFCD02579135\n'] 630s HBA ['[1, 11, 14, 21]\n'] 630s HBD ['[]\n'] 630s ACD_NUMBER ['MFCD02681468\n'] 630s SCORE ['-213.462\n'] 630s MOLID ['MFCD02681468\n'] 630s HBA ['[1, 13, 14, 29]\n'] 630s HBD ['[]\n'] 630s ACD_NUMBER ['MFCD00141070\n'] 630s SCORE ['-213.240\n'] 630s MOLID ['MFCD00141070\n'] 630s HBA ['[1, 8]\n'] 630s HBD ['[]\n'] 630s ACD_NUMBER ['MFCD02983625\n'] 630s SCORE ['-211.422\n'] 630s MOLID ['MFCD02983625\n'] 630s HBA ['[1, 11]\n'] 630s HBD ['[3, 12]\n'] 630s ACD_NUMBER ['MFCD00115818\n'] 630s SCORE ['-210.482\n'] 630s MOLID ['MFCD00115818\n'] 630s autopkgtest [16:18:59]: test command5: -----------------------] 634s autopkgtest [16:19:03]: test command5: - - - - - - - - - - results - - - - - - - - - - 634s command5 PASS (superficial) 638s autopkgtest [16:19:07]: @@@@@@@@@@@@@@@@@@@@ summary 638s command1 PASS (superficial) 638s command2 PASS (superficial) 638s command3 PASS (superficial) 638s command4 PASS (superficial) 638s command5 PASS (superficial)