0s autopkgtest [19:22:52]: starting date and time: 2024-11-13 19:22:52+0000 0s autopkgtest [19:22:52]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [19:22:52]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wn_7bid0/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade pybigwig --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.27 lxd-armhf-10.145.243.27:autopkgtest/ubuntu/plucky/armhf 53s autopkgtest [19:23:45]: testbed dpkg architecture: armhf 55s autopkgtest [19:23:47]: testbed apt version: 2.9.8 55s autopkgtest [19:23:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 64s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [958 kB] 64s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [98.3 kB] 64s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 64s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [101 kB] 64s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [647 kB] 64s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 64s Fetched 1919 kB in 1s (2070 kB/s) 64s Reading package lists... 82s tee: /proc/self/fd/2: Permission denied 103s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 103s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 103s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 104s Reading package lists... 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 105s The following NEW packages will be installed: 105s python3.13-gdbm 105s The following packages will be upgraded: 105s libgnutls30t64 libjson-glib-1.0-0 libjson-glib-1.0-common libnewt0.52 105s libpython3-stdlib libutempter0 python3 python3-gdbm python3-minimal 105s python3-newt whiptail 106s 11 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 1207 kB of archives. 106s After this operation, 124 kB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 106s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 106s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 106s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 106s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 106s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 106s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 106s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 106s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 106s Fetched 1207 kB in 1s (1931 kB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 107s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 107s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 107s Setting up python3-minimal (3.12.7-1) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 107s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 107s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 107s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 107s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 107s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_armhf.deb ... 107s Unpacking libgnutls30t64:armhf (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 107s Setting up libgnutls30t64:armhf (3.8.8-2ubuntu1) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 107s Preparing to unpack .../0-python3-newt_0.52.24-2ubuntu4_armhf.deb ... 107s Unpacking python3-newt:armhf (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 107s Preparing to unpack .../1-libnewt0.52_0.52.24-2ubuntu4_armhf.deb ... 107s Unpacking libnewt0.52:armhf (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 107s Preparing to unpack .../2-whiptail_0.52.24-2ubuntu4_armhf.deb ... 107s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 107s Selecting previously unselected package python3.13-gdbm. 107s Preparing to unpack .../3-python3.13-gdbm_3.13.0-2_armhf.deb ... 107s Unpacking python3.13-gdbm (3.13.0-2) ... 107s Preparing to unpack .../4-python3-gdbm_3.12.7-1_armhf.deb ... 107s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 107s Preparing to unpack .../5-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 107s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 107s Preparing to unpack .../6-libjson-glib-1.0-0_1.10.0+ds-3_armhf.deb ... 107s Unpacking libjson-glib-1.0-0:armhf (1.10.0+ds-3) over (1.10.0+ds-2) ... 107s Preparing to unpack .../7-libutempter0_1.2.1-4_armhf.deb ... 107s Unpacking libutempter0:armhf (1.2.1-4) over (1.2.1-3build1) ... 107s Setting up libnewt0.52:armhf (0.52.24-2ubuntu4) ... 107s Setting up libutempter0:armhf (1.2.1-4) ... 107s Setting up whiptail (0.52.24-2ubuntu4) ... 107s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 107s Setting up python3.13-gdbm (3.13.0-2) ... 107s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 107s Setting up python3 (3.12.7-1) ... 108s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 108s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 108s Setting up python3-gdbm:armhf (3.12.7-1) ... 108s Processing triggers for man-db (2.12.1-3) ... 108s Processing triggers for libc-bin (2.40-1ubuntu3) ... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s autopkgtest [19:24:44]: rebooting testbed after setup commands that affected boot 181s autopkgtest [19:25:53]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 209s autopkgtest [19:26:21]: @@@@@@@@@@@@@@@@@@@@ apt-source pybigwig 220s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (dsc) [2328 B] 220s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (tar) [31.8 kB] 220s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pybigwig 0.3.23+dfsg-1 (diff) [4860 B] 220s gpgv: Signature made Sun Nov 3 16:14:37 2024 UTC 220s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 220s gpgv: issuer "emollier@debian.org" 220s gpgv: Can't check signature: No public key 220s dpkg-source: warning: cannot verify inline signature for ./pybigwig_0.3.23+dfsg-1.dsc: no acceptable signature found 220s autopkgtest [19:26:32]: testing package pybigwig version 0.3.23+dfsg-1 222s autopkgtest [19:26:34]: build not needed 224s autopkgtest [19:26:36]: test command1: preparing testbed 234s Reading package lists... 234s Building dependency tree... 234s Reading state information... 235s Starting pkgProblemResolver with broken count: 0 235s Starting 2 pkgProblemResolver with broken count: 0 235s Done 236s The following additional packages will be installed: 236s libbigwig0t64 libblas3 libgfortran5 liblapack3 libpython3.12t64 236s libpython3.13-minimal libpython3.13-stdlib python3-all python3-numpy 236s python3-pybigwig python3.13 python3.13-minimal 236s Suggested packages: 236s gcc gfortran python-numpy-doc python3-dev python3-pytest python3.13-venv 236s python3.13-doc binfmt-support 236s The following NEW packages will be installed: 236s autopkgtest-satdep libbigwig0t64 libblas3 libgfortran5 liblapack3 236s libpython3.12t64 libpython3.13-minimal libpython3.13-stdlib python3-all 236s python3-numpy python3-pybigwig python3.13 python3.13-minimal 236s 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. 236s Need to get 13.6 MB/13.6 MB of archives. 236s After this operation, 47.2 MB of additional disk space will be used. 236s Get:1 /tmp/autopkgtest.Nf4AUj/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [716 B] 236s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 236s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 237s Get:4 http://ftpmaster.internal/ubuntu plucky/universe armhf libbigwig0t64 armhf 0.4.7+dfsg-3.1build2 [27.0 kB] 237s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 237s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 237s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 237s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12t64 armhf 3.12.7-3 [2075 kB] 237s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 237s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 237s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 237s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 237s Get:13 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pybigwig armhf 0.3.23+dfsg-1 [37.1 kB] 237s Fetched 13.6 MB in 1s (13.9 MB/s) 237s Selecting previously unselected package libpython3.13-minimal:armhf. 237s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59567 files and directories currently installed.) 237s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ... 237s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 237s Selecting previously unselected package python3.13-minimal. 237s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ... 237s Unpacking python3.13-minimal (3.13.0-2) ... 237s Selecting previously unselected package libbigwig0t64:armhf. 237s Preparing to unpack .../02-libbigwig0t64_0.4.7+dfsg-3.1build2_armhf.deb ... 237s Unpacking libbigwig0t64:armhf (0.4.7+dfsg-3.1build2) ... 237s Selecting previously unselected package libblas3:armhf. 238s Preparing to unpack .../03-libblas3_3.12.0-3build2_armhf.deb ... 238s Unpacking libblas3:armhf (3.12.0-3build2) ... 238s Selecting previously unselected package libgfortran5:armhf. 238s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 238s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 238s Selecting previously unselected package liblapack3:armhf. 238s Preparing to unpack .../05-liblapack3_3.12.0-3build2_armhf.deb ... 238s Unpacking liblapack3:armhf (3.12.0-3build2) ... 238s Selecting previously unselected package libpython3.12t64:armhf. 238s Preparing to unpack .../06-libpython3.12t64_3.12.7-3_armhf.deb ... 238s Unpacking libpython3.12t64:armhf (3.12.7-3) ... 238s Selecting previously unselected package libpython3.13-stdlib:armhf. 238s Preparing to unpack .../07-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 238s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 238s Selecting previously unselected package python3.13. 238s Preparing to unpack .../08-python3.13_3.13.0-2_armhf.deb ... 238s Unpacking python3.13 (3.13.0-2) ... 238s Selecting previously unselected package python3-all. 238s Preparing to unpack .../09-python3-all_3.12.7-1_armhf.deb ... 238s Unpacking python3-all (3.12.7-1) ... 238s Selecting previously unselected package python3-numpy. 238s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 238s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 238s Selecting previously unselected package python3-pybigwig. 238s Preparing to unpack .../11-python3-pybigwig_0.3.23+dfsg-1_armhf.deb ... 238s Unpacking python3-pybigwig (0.3.23+dfsg-1) ... 238s Selecting previously unselected package autopkgtest-satdep. 238s Preparing to unpack .../12-1-autopkgtest-satdep.deb ... 238s Unpacking autopkgtest-satdep (0) ... 238s Setting up libpython3.12t64:armhf (3.12.7-3) ... 238s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 238s Setting up libblas3:armhf (3.12.0-3build2) ... 238s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 238s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 238s Setting up python3.13-minimal (3.13.0-2) ... 239s Setting up libbigwig0t64:armhf (0.4.7+dfsg-3.1build2) ... 239s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... 239s Setting up liblapack3:armhf (3.12.0-3build2) ... 239s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 239s Setting up python3.13 (3.13.0-2) ... 241s Setting up python3-all (3.12.7-1) ... 241s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 245s Setting up python3-pybigwig (0.3.23+dfsg-1) ... 245s Setting up autopkgtest-satdep (0) ... 245s Processing triggers for systemd (256.5-2ubuntu4) ... 245s Processing triggers for man-db (2.12.1-3) ... 245s Processing triggers for libc-bin (2.40-1ubuntu3) ... 257s (Reading database ... 61228 files and directories currently installed.) 257s Removing autopkgtest-satdep (0) ... 263s autopkgtest [19:27:15]: test command1: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd pyBigWigTest ; $py test.py ; cd .. ; done 263s autopkgtest [19:27:15]: test command1: [----------------------- 265s Traceback (most recent call last): 265s File "/tmp/autopkgtest.Nf4AUj/build.0UU/src/pyBigWigTest/test.py", line 1, in 265s import pyBigWig 265s ModuleNotFoundError: No module named 'pyBigWig' 266s autopkgtest [19:27:17]: test command1: -----------------------] 270s autopkgtest [19:27:22]: test command1: - - - - - - - - - - results - - - - - - - - - - 270s command1 FAIL non-zero exit status 1 271s autopkgtest [19:27:23]: test command1: - - - - - - - - - - stderr - - - - - - - - - - 271s Traceback (most recent call last): 271s File "/tmp/autopkgtest.Nf4AUj/build.0UU/src/pyBigWigTest/test.py", line 1, in 271s import pyBigWig 271s ModuleNotFoundError: No module named 'pyBigWig' 275s autopkgtest [19:27:27]: @@@@@@@@@@@@@@@@@@@@ summary 275s command1 FAIL non-zero exit status 1