0s autopkgtest [15:23:12]: starting date and time: 2025-03-15 15:23:12+0000 0s autopkgtest [15:23:12]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:23:12]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.o6sl3aeg/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade prodigal --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.242 lxd-armhf-10.145.243.242:autopkgtest/ubuntu/plucky/armhf 22s autopkgtest [15:23:34]: testbed dpkg architecture: armhf 24s autopkgtest [15:23:36]: testbed apt version: 2.9.33 28s autopkgtest [15:23:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [15:23:42]: testbed release detected to be: None 38s autopkgtest [15:23:50]: updating testbed package index (apt update) 40s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 40s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 41s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 41s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 41s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 41s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 41s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 41s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [81.0 kB] 41s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1944 B] 41s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 41s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [326 kB] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [12.1 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [332 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 42s Get:16 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 42s Get:17 http://ftpmaster.internal/ubuntu plucky/main Sources [1400 kB] 43s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 43s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 43s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 43s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 43s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 47s Fetched 41.0 MB in 6s (6393 kB/s) 48s Reading package lists... 54s autopkgtest [15:24:06]: upgrading testbed (apt dist-upgrade and autopurge) 56s Reading package lists... 56s Building dependency tree... 56s Reading state information... 56s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 57s Starting 2 pkgProblemResolver with broken count: 0 57s Done 57s Entering ResolveByKeep 58s 58s Calculating upgrade... 58s The following packages will be upgraded: 58s libc-bin libc6 locales python3-jinja2 sos strace 59s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s Need to get 8642 kB of archives. 59s After this operation, 23.6 kB of additional disk space will be used. 59s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 59s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 59s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 60s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 60s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 60s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 60s Preconfiguring packages ... 60s Fetched 8642 kB in 1s (6452 kB/s) 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 60s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 61s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 61s Setting up libc6:armhf (2.41-1ubuntu2) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 61s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 61s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 61s Setting up libc-bin (2.41-1ubuntu2) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 61s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 61s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 62s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 62s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 62s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 62s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 62s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 62s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 62s Setting up sos (4.9.0-5) ... 63s Setting up locales (2.41-1ubuntu2) ... 64s Generating locales (this might take a while)... 66s en_US.UTF-8... done 66s Generation complete. 66s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 66s Setting up strace (6.13+ds-1ubuntu1) ... 66s Processing triggers for man-db (2.13.0-1) ... 67s Processing triggers for systemd (257.3-1ubuntu3) ... 69s Reading package lists... 70s Building dependency tree... 70s Reading state information... 70s Starting pkgProblemResolver with broken count: 0 70s Starting 2 pkgProblemResolver with broken count: 0 70s Done 71s Solving dependencies... 71s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 73s autopkgtest [15:24:25]: rebooting testbed after setup commands that affected boot 115s autopkgtest [15:25:07]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 141s autopkgtest [15:25:33]: @@@@@@@@@@@@@@@@@@@@ apt-source prodigal 151s Get:1 http://ftpmaster.internal/ubuntu plucky/universe prodigal 1:2.6.3-6 (dsc) [1992 B] 151s Get:2 http://ftpmaster.internal/ubuntu plucky/universe prodigal 1:2.6.3-6 (tar) [611 kB] 151s Get:3 http://ftpmaster.internal/ubuntu plucky/universe prodigal 1:2.6.3-6 (diff) [49.3 kB] 152s gpgv: Signature made Tue Dec 6 13:16:13 2022 UTC 152s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 152s gpgv: issuer "tille@debian.org" 152s gpgv: Can't check signature: No public key 152s dpkg-source: warning: cannot verify inline signature for ./prodigal_2.6.3-6.dsc: no acceptable signature found 152s autopkgtest [15:25:44]: testing package prodigal version 1:2.6.3-6 154s autopkgtest [15:25:46]: build not needed 157s autopkgtest [15:25:49]: test run-unit-test: preparing testbed 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Starting pkgProblemResolver with broken count: 0 159s Starting 2 pkgProblemResolver with broken count: 0 159s Done 160s The following NEW packages will be installed: 160s prodigal 160s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 841 kB of archives. 160s After this operation, 12.8 MB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf prodigal armhf 1:2.6.3-6 [841 kB] 162s Fetched 841 kB in 1s (827 kB/s) 162s Selecting previously unselected package prodigal. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 162s Preparing to unpack .../prodigal_1%3a2.6.3-6_armhf.deb ... 162s Unpacking prodigal (1:2.6.3-6) ... 162s Setting up prodigal (1:2.6.3-6) ... 162s Processing triggers for man-db (2.13.0-1) ... 170s autopkgtest [15:26:02]: test run-unit-test: [----------------------- 172s ------------------------------------- 172s PRODIGAL v2.6.3 [February, 2016] 172s Univ of Tenn / Oak Ridge National Lab 172s Doug Hyatt, Loren Hauser, et al. 172s ------------------------------------- 172s Request: Single Genome, Phase: Training 172s Reading in the sequence(s) to train...174014 bp seq created, 17.63 pct GC 172s Locating all potential starts and stops...2619 nodes 172s Looking for GC bias in different frames...frame bias scores: 1.27 1.60 0.12 172s Building initial set of genes to train from...done! 172s Creating coding model and scoring nodes...done! 172s Examining upstream regions and training starts...done! 172s Writing data to training file testgenome.trn...done! 173s autopkgtest [15:26:05]: test run-unit-test: -----------------------] 177s autopkgtest [15:26:09]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 177s run-unit-test PASS 181s autopkgtest [15:26:13]: @@@@@@@@@@@@@@@@@@@@ summary 181s run-unit-test PASS