0s autopkgtest [15:22:47]: starting date and time: 2025-03-15 15:22:47+0000 0s autopkgtest [15:22:47]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:22:47]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bilk966l/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade probalign --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.158 lxd-armhf-10.145.243.158:autopkgtest/ubuntu/plucky/armhf 26s autopkgtest [15:23:13]: testbed dpkg architecture: armhf 28s autopkgtest [15:23:15]: testbed apt version: 2.9.33 32s autopkgtest [15:23:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 34s autopkgtest [15:23:21]: testbed release detected to be: None 42s autopkgtest [15:23:29]: updating testbed package index (apt update) 44s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 45s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 45s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 45s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 45s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 45s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 45s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 45s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [81.0 kB] 45s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1944 B] 45s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 45s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [326 kB] 45s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [12.1 kB] 45s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 45s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [332 B] 45s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1400 kB] 45s Get:16 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 45s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 49s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 49s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 49s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 49s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 51s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 53s Fetched 41.0 MB in 9s (4723 kB/s) 54s Reading package lists... 60s autopkgtest [15:23:47]: upgrading testbed (apt dist-upgrade and autopurge) 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 63s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 63s Starting 2 pkgProblemResolver with broken count: 0 63s Done 64s Entering ResolveByKeep 64s 64s Calculating upgrade... 65s The following packages will be upgraded: 65s libc-bin libc6 locales python3-jinja2 sos strace 65s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s Need to get 8642 kB of archives. 65s After this operation, 23.6 kB of additional disk space will be used. 65s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 66s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 66s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 67s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 67s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 67s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 67s Preconfiguring packages ... 68s Fetched 8642 kB in 2s (4034 kB/s) 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 68s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 68s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 68s Setting up libc6:armhf (2.41-1ubuntu2) ... 68s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 68s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 68s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 68s Setting up libc-bin (2.41-1ubuntu2) ... 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 69s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 69s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 69s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 69s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 69s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 69s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 69s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 69s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 69s Setting up sos (4.9.0-5) ... 70s Setting up locales (2.41-1ubuntu2) ... 71s Generating locales (this might take a while)... 73s en_US.UTF-8... done 73s Generation complete. 73s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 73s Setting up strace (6.13+ds-1ubuntu1) ... 73s Processing triggers for man-db (2.13.0-1) ... 74s Processing triggers for systemd (257.3-1ubuntu3) ... 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s Starting pkgProblemResolver with broken count: 0 78s Starting 2 pkgProblemResolver with broken count: 0 78s Done 78s Solving dependencies... 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s autopkgtest [15:24:08]: rebooting testbed after setup commands that affected boot 124s autopkgtest [15:24:51]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 151s autopkgtest [15:25:18]: @@@@@@@@@@@@@@@@@@@@ apt-source probalign 161s Get:1 http://ftpmaster.internal/ubuntu plucky/universe probalign 1.4-10 (dsc) [1971 B] 161s Get:2 http://ftpmaster.internal/ubuntu plucky/universe probalign 1.4-10 (tar) [30.1 kB] 161s Get:3 http://ftpmaster.internal/ubuntu plucky/universe probalign 1.4-10 (diff) [4916 B] 161s gpgv: Signature made Thu Jan 19 13:18:09 2023 UTC 161s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 161s gpgv: issuer "tille@debian.org" 161s gpgv: Can't check signature: No public key 161s dpkg-source: warning: cannot verify inline signature for ./probalign_1.4-10.dsc: no acceptable signature found 161s autopkgtest [15:25:28]: testing package probalign version 1.4-10 163s autopkgtest [15:25:30]: build not needed 165s autopkgtest [15:25:32]: test run-unit-test: preparing testbed 166s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Starting pkgProblemResolver with broken count: 0 167s Starting 2 pkgProblemResolver with broken count: 0 167s Done 168s The following NEW packages will be installed: 168s probalign 168s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 168s Need to get 60.6 kB of archives. 168s After this operation, 117 kB of additional disk space will be used. 168s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf probalign armhf 1.4-10 [60.6 kB] 169s Fetched 60.6 kB in 0s (189 kB/s) 169s Selecting previously unselected package probalign. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 169s Preparing to unpack .../probalign_1.4-10_armhf.deb ... 169s Unpacking probalign (1.4-10) ... 169s Setting up probalign (1.4-10) ... 169s Processing triggers for man-db (2.13.0-1) ... 177s autopkgtest [15:25:44]: test run-unit-test: [----------------------- 179s 179s PROBALIGN Version 1.4 (Nov 2010) aligns multiple protein sequences and prints to the 179s standard output. Written by Satish Chikkagoudar and Usman Roshan using code from PROBCONS 179s version 1.1 (written by Chuong Do) and based upon probA (written by Ulrike Muckstein). 179s 179s Loading sequence file: test_data_p.fas 179s Alignment tree: ((s1 s0) (s3 s2)) 179s 179s >s1 179s LLSPNGAGWVVAPITMHDSAQINMPWQRRKDFLVQACVPVLKNLYKRKYEKVIKSIVYER 179s LYIFRGLWSGGCA--RYFDPPRCYKRSPEFYLGQFHGPLVHIGTMGHTECLHYGYDIQVN 179s CNKHDNKVTPK 179s >s0 179s -----------------------------KTLCVTDEVAKPRILNRKEYERVVIYGGYQW 179s TILFTKVWNGGSG--FKCDPNRCLKQAKLYYLPLFHAPIVEAAHQAGGKSLKFELDIRQV 179s SAMNASHKSGN 179s >s3 179s -----------------------------KVYYVEEAGSPTKGTFEEDYDGLELGAGFGW 179s RTQLVRLWAKDCFNDTSKEPNTCFRKPSKLYNGEVREIVLEAAGYTKAGDMRYAAVQSVA 179s AAHTRNKTTDS 179s >s2 179s -----------------------------KTFYINVDTNPMKALYKHEYNRELSGIPLDW 179s SSLVGRLWAKDCFTTKLNDPSERFRPPTKGFNKEDCLIVLAVNVQTHGGTLRFGIPERVK 179s CDRSRSKSTGK 179s 179s 179s PROBALIGN Version 1.4 (Nov 2010) aligns multiple protein sequences and prints to the 179s standard output. Written by Satish Chikkagoudar and Usman Roshan using code from PROBCONS 179s version 1.1 (written by Chuong Do) and based upon probA (written by Ulrike Muckstein). 179s 179s Loading sequence file: test_data_n.fas 179s Alignment tree: ((s1 s2) (s0 s3)) 179s 179s >s1 179s ACGTTT-----TCGAACCCCCCGAAATTTTGGGCGCGCG-------------CACACACT 179s CATCACTCTCGACGCAAAAC------GGCT---GCACACACTCATCACTC----TCGACG 179s C-AAA--ACGGCTGCAAAACG-GCTGCACACACTCATCAC-- 179s >s0 179s A--TTTCTCTCTCAAACCCCCCGAAATTTTGGGCGCGCG-------------CACACACT 179s CATCACTCTCGACGCAAAACATTTTGGGCGCGCGCACACACTCATCACTCATTTT-G--- 179s ---------GGC-GC-------GC-GCACACACTCATCACTC 179s >s3 179s A--TTTCTCTCTCAAACCCCCCGAAATTTTGGGCGCGCG-------------CACACACT 179s CATCACTCTCGACGCAAAACATTTTGGGCGCGCGCACACACTCG----------TCG-CG 179s CGAAACTA---C-GC---ACGTGC-GCACACACTCATCACTC 179s >s2 179s ACGTTT-----TCGAACCCCCCGAAATTTT---C-CCCCCCCCCCCCCCCCCCCC-CACT 179s CATCACTCTCGACGCAAAAC------GGCT---GCACACACTCATCACTC----TCGACG 179s C-AAA--ACGGCTGCAAAACG-GCTGCACACACTCATCAC-- 179s 179s 179s PROBALIGN Version 1.4 (Nov 2010) aligns multiple protein sequences and prints to the 179s standard output. Written by Satish Chikkagoudar and Usman Roshan using code from PROBCONS 179s version 1.1 (written by Chuong Do) and based upon probA (written by Ulrike Muckstein). 179s 179s Loading sequence file: test_data_p.fas 179s Computing posterior matrix: (1) s1 vs. (2) s0 -- 179s 0 129 179s 1 100 179s ------------- 179s 0.5564424396 179s Computing posterior matrix: (1) s1 vs. (3) s3 -- 179s 0 129 179s 2 102 179s ------------- 179s >s1 179s LLSPNGAGWVVAPITMHDSAQINMPWQRRKDFLVQACVPVLKNLYKRKYEKVIKSIVYER 179s LYIFRGLWSGGCA--RYFDPPRCYKRSPEFYLGQFHGPLVHIGTMGHTECLHYGYDIQVN 179s CNKHDNKVTPK 179s >s0 179s -----------------------------KTLCVTDEVAKPRILNRKEYERVVIYGGYQW 179s TILFTKVWNGGSG--FKCDPNRCLKQAKLYYLPLFHAPIVEAAHQAGGKSLKFELDIRQV 179s SAMNASHKSGN 179s >s3 179s -----------------------------KVYYVEEAGSPTKGTFEEDYDGLELGAGFGW 179s RTQLVRLWAKDCFNDTSKEPNTCFRKPSKLYNGEVREIVLEAAGYTKAGDMRYAAVQSVA 179s AAHTRNKTTDS 179s >s2 179s -----------------------------KTFYINVDTNPMKALYKHEYNRELSGIPLDW 179s SSLVGRLWAKDCFTTKLNDPSERFRPPTKGFNKEDCLIVLAVNVQTHGGTLRFGIPERVK 179s CDRSRSKSTGK 179s >s1 179s ACGTTT-----TCGAACCCCCCGAAATTTTGGGCGCGCG-----------CACACACTCA 179s TCACTCTCGACGCAAAAC------GGCTG----CACACACTCATCACTC---TCGACGC- 179s AAA--ACGGCTGCAAAACG-GCTGCACACACTCATCAC-- 179s >s2 179s ACGTTT-----TCGAACCCCCCGAAATTTT---CCCCCCCCCCCCCCCCCCCCCCACTCA 179s TCACTCTCGACGCAAAAC------GGCTG----CACACACTCATCACTC---TCGACGC- 179s AAA--ACGGCTGCAAAACG-GCTGCACACACTCATCAC-- 179s >s0 179s A--TTTCTCTCTCAAACCCCCCGAAATTTTGGGCGCGCG-----------CACACACTCA 179s TCACTCTCGACGCAAAACATTTTGGGC-GCGCGCACACACTCATCACTCATTTTG----- 179s -------GGC-GC-------GC-GCACACACTCATCACTC 179s >s3 179s A--TTTCTCTCTCAAACCCCCCGAAATTTTGGGCGCGCG-----------CACACACTCA 179s TCACTCTCGACGCAAAACATTTTGGGC-G----CGCGCA--CA-CACTC--GTCG-CGCG 179s AAACTA---C-GC---ACGTGC-GCACACACTCATCACTC 179s 0.2607336938 179s Computing posterior matrix: (1) s1 vs. (4) s2 -- 179s 0 129 179s 3 102 179s ------------- 179s 0.4842562675 179s Computing posterior matrix: (2) s0 vs. (3) s3 -- 179s 1 100 179s 2 102 179s ------------- 179s 0.3741489649 179s Computing posterior matrix: (2) s0 vs. (4) s2 -- 179s 1 100 179s 3 102 179s ------------- 179s 0.3683230281 179s Computing posterior matrix: (3) s3 vs. (4) s2 -- 179s 2 102 179s 3 102 179s ------------- 179s 0.8540496826 179s Relaxing (1) s1 vs. (2) s0: 654 --> 516 -- done. 179s Relaxing (1) s1 vs. (3) s3: 864 --> 608 -- done. 179s Relaxing (1) s1 vs. (4) s2: 628 --> 499 -- done. 179s Relaxing (2) s0 vs. (3) s3: 694 --> 531 -- done. 179s Relaxing (2) s0 vs. (4) s2: 766 --> 588 -- done. 179s Relaxing (3) s3 vs. (4) s2: 249 --> 227 -- done. 179s Relaxing (1) s1 vs. (2) s0: 516 --> 397 -- done. 179s Relaxing (1) s1 vs. (3) s3: 608 --> 430 -- done. 179s Relaxing (1) s1 vs. (4) s2: 499 --> 405 -- done. 179s Relaxing (2) s0 vs. (3) s3: 531 --> 402 -- done. 179s Relaxing (2) s0 vs. (4) s2: 588 --> 425 -- done. 179s Relaxing (3) s3 vs. (4) s2: 227 --> 203 -- done. 179s 179s Alignment tree: ((s1 s0) (s3 s2)) 179s 179s [0] vs. [1]: 0.2394420803 179s [2] vs. [3]: 0.3004739285 179s [0,1] vs. [2,3]: 0.2197821587 179s [0,2,3] vs. [1]: 0.2272425592 179s [0,1] vs. [2,3]: 0.2197821587 179s [0,1,3] vs. [2]: 0.2441207469 179s [1,2] vs. [0,3]: 0.2414343655 179s [0,2,3] vs. [1]: 0.2272425592 179s [3] vs. [0,1,2]: 0.2492380887 179s [0,1,2] vs. [3]: 0.2492380887 179s [2,3] vs. [0,1]: 0.2197821587 179s [0,2] vs. [1,3]: 0.2459582537 179s [1] vs. [0,2,3]: 0.2272425592 179s [0,2] vs. [1,3]: 0.2459582537 179s [0,3] vs. [1,2]: 0.2414343655 179s [3] vs. [0,1,2]: 0.2492380887 179s [0,1,3] vs. [2]: 0.2441207469 179s [1,3] vs. [0,2]: 0.2459582537 179s [0,1,3] vs. [2]: 0.2441207469 179s [1,3] vs. [0,2]: 0.2459582537 179s [2] vs. [0,1,3]: 0.2441207469 179s [0] vs. [1,2,3]: 0.2267541587 179s [2,3] vs. [0,1]: 0.2197821587 179s [1] vs. [0,2,3]: 0.2272425592 179s [2] vs. [0,1,3]: 0.2441207469 179s [3] vs. [0,1,2]: 0.2492380887 179s [0] vs. [1,2,3]: 0.2267541587 179s [0,1,2] vs. [3]: 0.2492380887 179s [0] vs. [1,2,3]: 0.2267541587 179s [0,3] vs. [1,2]: 0.2414343655 179s [0,1,3] vs. [2]: 0.2441207469 179s [1,2,3] vs. [0]: 0.2267541587 179s [0,1,2] vs. [3]: 0.2492380887 179s [0,1,3] vs. [2]: 0.2441207469 179s [1,2] vs. [0,3]: 0.2414343655 179s [1,3] vs. [0,2]: 0.2459582537 179s [0,1] vs. [2,3]: 0.2197821587 179s [1,3] vs. [0,2]: 0.2459582537 179s [1,3] vs. [0,2]: 0.2459582537 179s [1,2,3] vs. [0]: 0.2267541587 179s [0] vs. [1,2,3]: 0.2267541587 179s [0,2] vs. [1,3]: 0.2459582537 179s [0,2,3] vs. [1]: 0.2272425592 179s [0,1,2] vs. [3]: 0.2492380887 179s [1,2] vs. [0,3]: 0.2414343655 179s [0,1,3] vs. [2]: 0.2441207469 179s [1,2,3] vs. [0]: 0.2267541587 179s [0,1] vs. [2,3]: 0.2197821587 179s [0,1,3] vs. [2]: 0.2441207469 179s [2,3] vs. [0,1]: 0.2197821587 179s [0] vs. [1,2,3]: 0.2267541587 179s [0,1,2] vs. [3]: 0.2492380887 179s [1,3] vs. [0,2]: 0.2459582537 179s [1,3] vs. [0,2]: 0.2459582537 179s [2,3] vs. [0,1]: 0.2197821587 179s [2] vs. [0,1,3]: 0.2441207469 179s [2,3] vs. [0,1]: 0.2197821587 179s [0,3] vs. [1,2]: 0.2414343655 179s [2,3] vs. [0,1]: 0.2197821587 179s [0,2,3] vs. [1]: 0.2272425592 179s [0,3] vs. [1,2]: 0.2414343655 179s [1] vs. [0,2,3]: 0.2272425592 179s [3] vs. [0,1,2]: 0.2492380887 179s [1,2] vs. [0,3]: 0.2414343655 179s [1,2,3] vs. [0]: 0.2267541587 179s [0,2] vs. [1,3]: 0.2459582537 179s [1,2,3] vs. [0]: 0.2267541587 179s [0,2,3] vs. [1]: 0.2272425592 179s [0,3] vs. [1,2]: 0.2414343655 179s [1,2] vs. [0,3]: 0.2414343655 179s [0,2] vs. [1,3]: 0.2459582537 179s [2,3] vs. [0,1]: 0.2197821587 179s [3] vs. [0,1,2]: 0.2492380887 179s [1,2] vs. [0,3]: 0.2414343655 179s [0,2,3] vs. [1]: 0.2272425592 179s [1,2] vs. [0,3]: 0.2414343655 179s [0] vs. [1,2,3]: 0.2267541587 179s [3] vs. [0,1,2]: 0.2492380887 179s [1] vs. [0,2,3]: 0.2272425592 179s [0,1,3] vs. [2]: 0.2441207469 179s [3] vs. [0,1,2]: 0.2492380887 179s [0,1,2] vs. [3]: 0.2492380887 179s [1] vs. [0,2,3]: 0.2272425592 179s [0,1,2] vs. [3]: 0.2492380887 179s [1] vs. [0,2,3]: 0.2272425592 179s [0,2,3] vs. [1]: 0.2272425592 179s [0,1,3] vs. [2]: 0.2441207469 179s [0,3] vs. [1,2]: 0.2414343655 179s [1] vs. [0,2,3]: 0.2272425592 179s 179s 179s PROBALIGN Version 1.4 (Nov 2010) aligns multiple protein sequences and prints to the 179s standard output. Written by Satish Chikkagoudar and Usman Roshan using code from PROBCONS 179s version 1.1 (written by Chuong Do) and based upon probA (written by Ulrike Muckstein). 179s 179s Loading sequence file: test_data_n.fas 179s Alignment tree: ((s1 s2) (s0 s3)) 179s 179s 179s autopkgtest [15:25:46]: test run-unit-test: -----------------------] 183s autopkgtest [15:25:50]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 183s run-unit-test PASS 187s autopkgtest [15:25:54]: @@@@@@@@@@@@@@@@@@@@ summary 187s run-unit-test PASS