0s autopkgtest [15:21:59]: starting date and time: 2025-03-15 15:21:59+0000 0s autopkgtest [15:21:59]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:21:59]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.sx8wwj_w/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade primer3 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.207 lxd-armhf-10.145.243.207:autopkgtest/ubuntu/plucky/armhf 24s autopkgtest [15:22:23]: testbed dpkg architecture: armhf 26s autopkgtest [15:22:25]: testbed apt version: 2.9.33 30s autopkgtest [15:22:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 32s autopkgtest [15:22:31]: testbed release detected to be: None 46s autopkgtest [15:22:45]: updating testbed package index (apt update) 49s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 49s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 49s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 49s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 49s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 49s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 50s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 50s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [81.0 kB] 50s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1944 B] 50s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 50s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [326 kB] 50s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [12.1 kB] 50s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 50s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [332 B] 50s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 50s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 54s Get:17 http://ftpmaster.internal/ubuntu plucky/main Sources [1400 kB] 54s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 54s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 54s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 54s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 57s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 59s Fetched 41.0 MB in 10s (4229 kB/s) 60s Reading package lists... 66s autopkgtest [15:23:05]: upgrading testbed (apt dist-upgrade and autopurge) 68s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 69s Starting 2 pkgProblemResolver with broken count: 0 69s Done 70s Entering ResolveByKeep 70s 70s Calculating upgrade... 71s The following packages will be upgraded: 71s libc-bin libc6 locales python3-jinja2 sos strace 71s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 8642 kB of archives. 71s After this operation, 23.6 kB of additional disk space will be used. 71s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 72s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 72s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 72s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 72s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 72s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 73s Preconfiguring packages ... 73s Fetched 8642 kB in 1s (5926 kB/s) 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 73s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 74s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 74s Setting up libc6:armhf (2.41-1ubuntu2) ... 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 74s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 74s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 74s Setting up libc-bin (2.41-1ubuntu2) ... 75s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 75s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 75s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 75s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 75s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 75s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 75s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 76s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 76s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 76s Setting up sos (4.9.0-5) ... 77s Setting up locales (2.41-1ubuntu2) ... 78s Generating locales (this might take a while)... 80s en_US.UTF-8... done 80s Generation complete. 80s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 81s Setting up strace (6.13+ds-1ubuntu1) ... 81s Processing triggers for man-db (2.13.0-1) ... 82s Processing triggers for systemd (257.3-1ubuntu3) ... 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 86s Starting pkgProblemResolver with broken count: 0 86s Starting 2 pkgProblemResolver with broken count: 0 86s Done 87s Solving dependencies... 88s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s autopkgtest [15:23:30]: rebooting testbed after setup commands that affected boot 132s autopkgtest [15:24:11]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 158s autopkgtest [15:24:37]: @@@@@@@@@@@@@@@@@@@@ apt-source primer3 182s Get:1 http://ftpmaster.internal/ubuntu plucky/universe primer3 2.6.1-5 (dsc) [2101 B] 182s Get:2 http://ftpmaster.internal/ubuntu plucky/universe primer3 2.6.1-5 (tar) [32.9 MB] 182s Get:3 http://ftpmaster.internal/ubuntu plucky/universe primer3 2.6.1-5 (diff) [14.0 kB] 182s gpgv: Signature made Sun Dec 1 12:08:12 2024 UTC 182s gpgv: using RSA key 52D5BD0E7D4DB084E34B5865D4A41CFADDB20DB5 182s gpgv: Can't check signature: No public key 182s dpkg-source: warning: cannot verify inline signature for ./primer3_2.6.1-5.dsc: no acceptable signature found 183s autopkgtest [15:25:02]: testing package primer3 version 2.6.1-5 186s autopkgtest [15:25:05]: build not needed 191s autopkgtest [15:25:10]: test run-unit-test: preparing testbed 193s Reading package lists... 194s Building dependency tree... 194s Reading state information... 195s Starting pkgProblemResolver with broken count: 0 195s Starting 2 pkgProblemResolver with broken count: 0 195s Done 197s The following NEW packages will be installed: 197s libc6-dbg primer3 primer3-examples valgrind 198s 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 198s Need to get 46.9 MB of archives. 198s After this operation, 92.3 MB of additional disk space will be used. 198s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf primer3 armhf 2.6.1-5 [201 kB] 198s Get:2 http://ftpmaster.internal/ubuntu plucky/universe armhf primer3-examples all 2.6.1-5 [31.8 MB] 204s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6-dbg armhf 2.41-1ubuntu2 [6305 kB] 205s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf valgrind armhf 1:3.24.0-0ubuntu1 [8587 kB] 207s Fetched 46.9 MB in 9s (5441 kB/s) 207s Selecting previously unselected package primer3. 207s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 207s Preparing to unpack .../primer3_2.6.1-5_armhf.deb ... 207s Unpacking primer3 (2.6.1-5) ... 207s Selecting previously unselected package primer3-examples. 207s Preparing to unpack .../primer3-examples_2.6.1-5_all.deb ... 207s Unpacking primer3-examples (2.6.1-5) ... 207s Selecting previously unselected package libc6-dbg:armhf. 207s Preparing to unpack .../libc6-dbg_2.41-1ubuntu2_armhf.deb ... 207s Unpacking libc6-dbg:armhf (2.41-1ubuntu2) ... 207s Selecting previously unselected package valgrind. 207s Preparing to unpack .../valgrind_1%3a3.24.0-0ubuntu1_armhf.deb ... 207s Unpacking valgrind (1:3.24.0-0ubuntu1) ... 208s Setting up primer3-examples (2.6.1-5) ... 208s Setting up libc6-dbg:armhf (2.41-1ubuntu2) ... 208s Setting up primer3 (2.6.1-5) ... 208s Setting up valgrind (1:3.24.0-0ubuntu1) ... 208s Processing triggers for man-db (2.13.0-1) ... 218s autopkgtest [15:25:37]: test run-unit-test: [----------------------- 222s example 222s kmer_lists 222s settings_files 222s src 222s test 222s testcmdline: 222s 222s 222s TESTING command line arguments 222s 222s Test 1... [OK] 222s Test 2... [OK] 222s Test 3... [OK] 222s Test 4... [OK] 222s Test 5... [OK] 222s Passed all tests - [OK] 222s 222s 222s testcore: 222s 222s 222s TESTING primer3_core 222s 222s p3test.pl for primer3_core version 2.6.1 222s 222s 222s p3test.pl: testing ../src/primer3_core 222s 222s START, Sat Mar 15 15:25:41 2025 222s 222s testing fatal errors... 222s ./primer_global_err/annealing_temp_salt 222s Testing --output and --error flags on 222s ../src/primer3_core --strict_tags ./primer_global_err/annealing_temp_salt.in --output ./primer_global_err/annealing_temp_salt.tmp --error ./primer_global_err/annealing_temp_salt.tmp2 222s ./primer_global_err/bad_divalent_dntp_conc_1 222s ./primer_global_err/bad_divalent_dntp_conc_2 222s ./primer_global_err/bad_divalent_dntp_conc_3 222s ./primer_global_err/bad_divalent_dntp_conc_4 222s ./primer_global_err/bad_dna_conc 222s ./primer_global_err/bad_first_base_index 222s ./primer_global_err/bad_float_1 222s ./primer_global_err/bad_float_2 222s ./primer_global_err/bad_float_3 222s ./primer_global_err/bad_float_4 222s ./primer_global_err/bad_gc_1 222s ./primer_global_err/bad_gc_2 222s ./primer_global_err/bad_gc_3 222s ./primer_global_err/bad_gc_int_1 222s ./primer_global_err/bad_gc_int_2 222s ./primer_global_err/bad_gc_int_3 222s ./primer_global_err/bad_min_three_prime_distance 222s ./primer_global_err/bad_num_ns 222s ./primer_global_err/bad_num_ns_int 222s ./primer_global_err/bad_product_sizes_1 222s ./primer_global_err/bad_product_sizes_2 222s ./primer_global_err/bad_product_sizes_3 222s ./primer_global_err/bad_product_sizes_4 222s ./primer_global_err/bad_salt_conc 222s ./primer_global_err/bad_self_any 222s ./primer_global_err/bad_self_any_int 222s ./primer_global_err/bad_self_end 222s ./primer_global_err/bad_self_end_int 222s ./primer_global_err/bad_settings0 222s ./primer_global_err/bad_settings1 222s ./primer_global_err/bad_settings2 222s ./primer_global_err/bad_settings3 222s ./primer_global_err/bad_settings4 222s ./primer_global_err/bad_settings5 222s ./primer_global_err/bad_settings6 222s ./primer_global_err/empty_1 222s ./primer_global_err/empty_product_size 222s ./primer_global_err/gc_clamp_min_size 222s ./primer_global_err/incorrect_task 223s ./primer_global_err/io_gc_content_obj_fn 223s ./primer_global_err/io_obj_fn 223s ./primer_global_err/junction_overlap_max_size 223s ./primer_global_err/junction_overlap_min_size 223s ./primer_global_err/max_annealing_temp 223s ./primer_global_err/max_min_bound 223s ./primer_global_err/max_min_bound_int 223s ./primer_global_err/max_min_tm 223s ./primer_global_err/max_min_tm_int 223s ./primer_global_err/max_opt_bound 223s ./primer_global_err/max_opt_bound_int 223s ./primer_global_err/max_opt_tm 223s ./primer_global_err/max_opt_tm_int 223s ./primer_global_err/MAX_PRIMER_LENGTH 223s ./primer_global_err/max_size_limit_int 223s ./primer_global_err/max_size_limit_with_overhang 223s ./primer_global_err/max_size_min_product 223s ./primer_global_err/max_size_min_product_int 223s ./primer_global_err/min_opt_tm 223s ./primer_global_err/min_opt_tm_int 223s ./primer_global_err/mishyb_obj_fn 223s ./primer_global_err/mispr_obj_fn 223s ./primer_global_err/must_match_length_0 223s ./primer_global_err/must_match_length_1 223s ./primer_global_err/must_match_length_10 223s ./primer_global_err/must_match_length_2 223s ./primer_global_err/must_match_length_3 223s ./primer_global_err/must_match_length_4 223s ./primer_global_err/must_match_length_5 223s ./primer_global_err/must_match_length_6 223s ./primer_global_err/must_match_length_7 223s ./primer_global_err/must_match_length_8 223s ./primer_global_err/must_match_length_9 223s ./primer_global_err/no_equal 223s ./primer_global_err/no_terminal_equal 223s ./primer_global_err/opt_max_size 223s ./primer_global_err/opt_max_size_int 223s ./primer_global_err/opt_min_size 223s ./primer_global_err/opt_min_size_int 223s ./primer_global_err/pair_mispr 223s ./primer_global_err/pr_gc_content_obj_fn 223s ./primer_global_err/product_size_obj_fn 223s ./primer_global_err/product_tm_obj_fn 223s ./primer_global_err/repeat_lib_err 223s ./primer_global_err/repeat_lib_err1 223s ./primer_global_err/repeat_lib_err2 223s ./primer_global_err/repeat_lib_err3 223s ./primer_global_err/repeat_lib_err4 223s ./primer_global_err/repeat_lib_err5 223s ./primer_global_err/repeat_lib_err6 223s ./primer_global_err/repeat_lib_int_err 223s ./primer_global_err/repeat_lib_int_err1 223s ./primer_global_err/repeat_lib_int_err2 223s ./primer_global_err/repeat_lib_int_err3 223s ./primer_global_err/repeat_lib_int_err4 223s ./primer_global_err/repeat_lib_int_err5 223s ./primer_global_err/repeat_lib_int_err6 223s ./primer_global_err/seq_quality1 223s ./primer_global_err/seq_quality2 223s ./primer_global_err/seq_quality3 223s ./primer_global_err/seq_quality4 223s ./primer_global_err/too_many_product_sizes 223s ./primer_global_err/zero_min_size 223s ./primer_global_err/zero_num_return 223s [OK] 223s primer_must_use_th...0s [OK] 223s primer_sec_struct_dpal...0s [OK] 224s primer_task_th...1s [OK] 224s primer_thal_args...0s [OK] 225s primer_thal_max_seq_error...1s [OK] 225s primer_first_base_index...0s [OK] 225s primer_must_match...0s [OK] 225s test_compl_error...0s [OK] 225s test_left_to_right_of_right...0s [OK] 225s dv_conc_vs_dntp_conc...0s [OK] 225s primer_boundary...0s [OK] 225s primer_boundary1...0s [OK] 225s primer_boundary_formatted...0s [OK] 225s primer_boundary1_formatted...0s [OK] 225s primer3_v1_1_4_default_settings...0s [OK] 225s primer3web_v0_4_0_default_settings...0s [OK] 227s primer3web_v3_0_0_default_settings...2s [OK] 227s primer3web_v4_0_0_default_settings...0s [OK] 227s primer_internal...0s [OK] 227s primer_internal1...0s [OK] 227s primer_internal_formatted...0s [OK] 227s primer_internal1_formatted...0s [OK] 227s primer_ok_regions...0s [OK] 227s primer_ok_regions_formatted...0s [OK] 235s primer_ok_regions2...8s [OK] 235s primer_tm_lc_masking...0s [OK] 235s primer_tm_lc_masking_formatted...0s [OK] 235s primer_start_codon...0s [OK] 235s primer_task...0s [OK] 235s primer_task_formatted...0s [OK] 235s primer_renewed_tasks...0s [OK] 235s primer_dmso_formamide...0s [OK] 235s primer_new_tasks...0s [OK] 236s primer_new_tasks_formatted...1s [OK] 236s primer_internal_position...0s [OK] 236s primer_annealing_temp...0s [OK] 237s primer_windows_newlines...1s [OK] 237s primer_must_overlap_point...0s [OK] 237s primer_overlap_junction...0s [OK] 238s primer_all_settingsfiles...0s [OK] 238s primer_high_tm_load_set...1s [OK] 238s primer_high_gc_load_set...0s [OK] 238s primer_gc_end...0s [OK] 238s primer_check...0s [OK] 238s primer_must_use...0s [OK] 238s primer_must_use_formatted...0s [OK] 238s primer_syntax...0s [OK] 238s primer_end_pathology...0s [OK] 238s primer_num_best...0s [OK] 238s primer_quality_boundary...0s [OK] 239s primer...1s [OK] 239s primer_list_files...[OK] 239s primer1...0s [OK] 239s primer1_list_files...[OK] 239s primer_mispriming...0s [OK] 240s primer_mispriming_formatted...0s [OK] 240s primer_mispriming_boundary1...1s [OK] 240s primer_mispriming_boundary1_formatted...0s [OK] 240s primer_mispriming_boundary2...0s [OK] 240s primer_mispriming_boundary2_formatted...0s [OK] 240s primer_mispriming_long_lib...0s [OK] 240s primer_rat...0s [OK] 241s primer_human...1s [OK] 241s long_seq...0s [OK] 242s primer_position_penalty...1s [OK] 242s primer_position_penalty_formatted...0s [OK] 242s p3-tmpl-mispriming...0s [OK] 242s primer_poly_x...0s [OK] 242s primer_three_prime_distance...0s [OK] 244s primer_obj_fn...2s [OK] 244s p3_3_prime_n...0s [OK] 247s primer_masker...3s [OK] 249s primer_masker_formatted...2s [OK] 249s primer_overhang...0s [OK] 263s primer_overhang_th...14s [OK] 274s primer_mispriming_th...11s [OK] 288s th-w-other-tasks...14s [OK] 288s th-w-other-tasks_list_files...[OK] 308s primer_new_tasks_th...20s [OK] 323s primer_sec_struct_thal...14s [OK] 369s primer_thermod_align...47s [OK] 414s primer_thermod_align_formatted...45s [OK] 537s primer1_th...122s [OK] 537s primer1_th_list_files...[OK] 537s primer_lib_amb_codes... 537s NOTE: this test takes _much_ longer than the others (5 to 20 minutes or more). 652s starting primer_lib_amb_codes at Sat Mar 15 15:30:56 2025...115s [OK] 652s 652s Tests in p3test.pl ran for 430 s (7.16666666666667 min) 652s 652s DONE Sat Mar 15 15:32:51 2025 Passed all tests - [OK] 652s 652s 652s testdpal: 652s 652s 652s TESTING ALIGNMENT CALCS 652s 652s Error handling of too-long sequence...[OK] 652s Default implementations + alignment...[OK] 653s Default implementations + NO alignment 1...[OK] 653s Default implementations + NO alignment 2...[OK] 654s Force _dpal_generic...[OK] 654s Force _dpal_long_nopath_generic 1...[OK] 654s Force _dpal_long_nopath_generic 2...[OK] 655s Force long maxgap1 functions 1...[OK] 655s Force long maxgap1 functions 2...[OK] 655s testthal: 655s 655s 655s TESTING THERMODYNAMIC ALIGNMENT CALCS 655s 655s Error handling of too-long sequence... 655s 1................................... [OK] 656s Default implementations + alignment...[OK] 657s Default implementations + NO alignment 1...[OK] 658s Default implementations + NO alignment 2...[OK] 660s Default implementations + alignment (interactive)...[OK] 662s Default implementations + NO alignment 1 (interactive)...[OK] 662s Default implementations + NO alignment 2 (interactive)...[OK] 662s Default implementations + alignment (interactive batch inputs)...[OK] 662s Default implementations + alignment + HAIRPIN (interactive batch inputs)...[OK] 662s testtm: 662s 662s TESTING Tm CALCULATIONS 662s 662s Tm tests nr 1-50: [OK] 662s 662s 662s PASS 663s autopkgtest [15:33:02]: test run-unit-test: -----------------------] 667s autopkgtest [15:33:06]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 667s run-unit-test PASS 671s autopkgtest [15:33:10]: @@@@@@@@@@@@@@@@@@@@ summary 671s run-unit-test PASS