0s autopkgtest [02:50:11]: starting date and time: 2025-02-08 02:50:11+0000 0s autopkgtest [02:50:11]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [02:50:11]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8mg98e1k/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:plink2 --apt-upgrade plink2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=plink2/2.00~a6.9-250129+dfsg-1' -- lxd -r lxd-armhf-10.145.243.201 lxd-armhf-10.145.243.201:autopkgtest/ubuntu/plucky/armhf 29s autopkgtest [02:50:40]: testbed dpkg architecture: armhf 31s autopkgtest [02:50:42]: testbed apt version: 2.9.27ubuntu1 36s autopkgtest [02:50:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 38s autopkgtest [02:50:49]: testbed release detected to be: None 47s autopkgtest [02:50:58]: updating testbed package index (apt update) 49s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 50s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [249 kB] 50s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [110 kB] 50s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [110 kB] 50s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [60.4 kB] 50s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [813 kB] 50s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [12.4 kB] 50s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [2428 B] 50s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [85.3 kB] 50s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [725 kB] 50s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [772 B] 50s Get:12 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 51s Get:13 http://ftpmaster.internal/ubuntu plucky/main Sources [1379 kB] 51s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1366 kB] 51s Get:15 http://ftpmaster.internal/ubuntu plucky/restricted armhf Packages [2900 B] 51s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [14.8 MB] 52s Get:17 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [171 kB] 55s Fetched 41.0 MB in 6s (6810 kB/s) 56s Reading package lists... 64s autopkgtest [02:51:15]: upgrading testbed (apt dist-upgrade and autopurge) 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 67s Entering ResolveByKeep 68s 68s The following packages will be upgraded: 68s apport apport-core-dump-handler apt apt-utils iptables libapt-pkg6.0t64 68s libip4tc2 libip6tc2 libpython3.13-minimal libpython3.13-stdlib libxtables12 68s pci.ids pollinate python3-apport python3-problem-report python3.13 68s python3.13-gdbm python3.13-minimal rsyslog 68s 19 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s Need to get 9699 kB of archives. 68s After this operation, 9068 kB of additional disk space will be used. 68s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libapt-pkg6.0t64 armhf 2.9.27ubuntu2 [1080 kB] 70s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf apt armhf 2.9.27ubuntu2 [1389 kB] 71s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf apt-utils armhf 2.9.27ubuntu2 [214 kB] 72s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.31.0-0ubuntu5 [25.5 kB] 72s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.31.0-0ubuntu5 [93.1 kB] 72s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.31.0-0ubuntu5 [18.4 kB] 72s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.31.0-0ubuntu5 [83.0 kB] 72s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.2-1 [734 kB] 73s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.2-1 [1969 kB] 74s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.2-1 [2012 kB] 75s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.2-1 [868 kB] 76s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf iptables armhf 1.8.11-2ubuntu1 [342 kB] 76s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libip4tc2 armhf 1.8.11-2ubuntu1 [21.7 kB] 76s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libip6tc2 armhf 1.8.11-2ubuntu1 [22.1 kB] 76s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libxtables12 armhf 1.8.11-2ubuntu1 [33.0 kB] 76s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf rsyslog armhf 8.2406.0-1ubuntu3 [467 kB] 76s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2025.01.27-1 [284 kB] 76s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf pollinate all 4.33-4ubuntu2 [12.4 kB] 76s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.2-1 [30.2 kB] 77s Fetched 9699 kB in 8s (1185 kB/s) 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 60666 files and directories currently installed.) 77s Preparing to unpack .../libapt-pkg6.0t64_2.9.27ubuntu2_armhf.deb ... 77s Unpacking libapt-pkg6.0t64:armhf (2.9.27ubuntu2) over (2.9.27ubuntu1) ... 77s Setting up libapt-pkg6.0t64:armhf (2.9.27ubuntu2) ... 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 60666 files and directories currently installed.) 77s Preparing to unpack .../apt_2.9.27ubuntu2_armhf.deb ... 78s Unpacking apt (2.9.27ubuntu2) over (2.9.27ubuntu1) ... 78s Setting up apt (2.9.27ubuntu2) ... 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 60666 files and directories currently installed.) 78s Preparing to unpack .../00-apt-utils_2.9.27ubuntu2_armhf.deb ... 78s Unpacking apt-utils (2.9.27ubuntu2) over (2.9.27ubuntu1) ... 78s Preparing to unpack .../01-python3-problem-report_2.31.0-0ubuntu5_all.deb ... 79s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 79s for fn in glob1(directory, "%s.*" % fname): 79s Unpacking python3-problem-report (2.31.0-0ubuntu5) over (2.31.0-0ubuntu4) ... 79s Preparing to unpack .../02-python3-apport_2.31.0-0ubuntu5_all.deb ... 81s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 81s for fn in glob1(directory, "%s.*" % fname): 81s Unpacking python3-apport (2.31.0-0ubuntu5) over (2.31.0-0ubuntu4) ... 81s Preparing to unpack .../03-apport-core-dump-handler_2.31.0-0ubuntu5_all.deb ... 81s Unpacking apport-core-dump-handler (2.31.0-0ubuntu5) over (2.31.0-0ubuntu4) ... 81s Preparing to unpack .../04-apport_2.31.0-0ubuntu5_all.deb ... 81s Unpacking apport (2.31.0-0ubuntu5) over (2.31.0-0ubuntu4) ... 81s Preparing to unpack .../05-python3.13_3.13.2-1_armhf.deb ... 81s Unpacking python3.13 (3.13.2-1) over (3.13.1-3) ... 81s Preparing to unpack .../06-libpython3.13-stdlib_3.13.2-1_armhf.deb ... 81s Unpacking libpython3.13-stdlib:armhf (3.13.2-1) over (3.13.1-3) ... 81s Preparing to unpack .../07-python3.13-minimal_3.13.2-1_armhf.deb ... 81s Unpacking python3.13-minimal (3.13.2-1) over (3.13.1-3) ... 81s Preparing to unpack .../08-libpython3.13-minimal_3.13.2-1_armhf.deb ... 81s Unpacking libpython3.13-minimal:armhf (3.13.2-1) over (3.13.1-3) ... 81s Preparing to unpack .../09-iptables_1.8.11-2ubuntu1_armhf.deb ... 81s Unpacking iptables (1.8.11-2ubuntu1) over (1.8.10-3ubuntu2) ... 81s Preparing to unpack .../10-libip4tc2_1.8.11-2ubuntu1_armhf.deb ... 81s Unpacking libip4tc2:armhf (1.8.11-2ubuntu1) over (1.8.10-3ubuntu2) ... 81s Preparing to unpack .../11-libip6tc2_1.8.11-2ubuntu1_armhf.deb ... 81s Unpacking libip6tc2:armhf (1.8.11-2ubuntu1) over (1.8.10-3ubuntu2) ... 81s Preparing to unpack .../12-libxtables12_1.8.11-2ubuntu1_armhf.deb ... 81s Unpacking libxtables12:armhf (1.8.11-2ubuntu1) over (1.8.10-3ubuntu2) ... 81s Preparing to unpack .../13-rsyslog_8.2406.0-1ubuntu3_armhf.deb ... 81s Unpacking rsyslog (8.2406.0-1ubuntu3) over (8.2406.0-1ubuntu2) ... 81s Preparing to unpack .../14-pci.ids_0.0~2025.01.27-1_all.deb ... 81s Unpacking pci.ids (0.0~2025.01.27-1) over (0.0~2025.01.13-1) ... 81s Preparing to unpack .../15-pollinate_4.33-4ubuntu2_all.deb ... 81s Unpacking pollinate (4.33-4ubuntu2) over (4.33-4ubuntu1) ... 81s Preparing to unpack .../16-python3.13-gdbm_3.13.2-1_armhf.deb ... 81s Unpacking python3.13-gdbm (3.13.2-1) over (3.13.1-3) ... 81s Setting up libip4tc2:armhf (1.8.11-2ubuntu1) ... 81s Setting up pci.ids (0.0~2025.01.27-1) ... 81s Setting up apt-utils (2.9.27ubuntu2) ... 81s Setting up python3-problem-report (2.31.0-0ubuntu5) ... 81s Setting up libip6tc2:armhf (1.8.11-2ubuntu1) ... 81s Setting up rsyslog (8.2406.0-1ubuntu3) ... 81s Installing new version of config file /etc/apparmor.d/usr.sbin.rsyslogd ... 81s info: The user `syslog' is already a member of `adm'. 81s apparmor_parser: Unable to replace "rsyslogd". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 81s 82s Setting up python3-apport (2.31.0-0ubuntu5) ... 82s Setting up libpython3.13-minimal:armhf (3.13.2-1) ... 82s Setting up pollinate (4.33-4ubuntu2) ... 83s Setting up libxtables12:armhf (1.8.11-2ubuntu1) ... 83s Setting up python3.13-minimal (3.13.2-1) ... 84s Setting up libpython3.13-stdlib:armhf (3.13.2-1) ... 84s Setting up python3.13-gdbm (3.13.2-1) ... 84s Setting up python3.13 (3.13.2-1) ... 85s Setting up iptables (1.8.11-2ubuntu1) ... 85s Setting up apport-core-dump-handler (2.31.0-0ubuntu5) ... 86s Setting up apport (2.31.0-0ubuntu5) ... 87s apport-autoreport.service is a disabled or a static unit not running, not starting it. 87s Processing triggers for libc-bin (2.40-4ubuntu1) ... 87s Processing triggers for systemd (257.2-3ubuntu1) ... 87s Processing triggers for man-db (2.13.0-1) ... 93s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 94s Done 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s autopkgtest [02:51:48]: rebooting testbed after setup commands that affected boot 145s autopkgtest [02:52:36]: testbed running kernel: Linux 6.8.0-49-generic #49~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov 6 18:12:14 UTC 2 173s autopkgtest [02:53:04]: @@@@@@@@@@@@@@@@@@@@ apt-source plink2 184s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/universe plink2 2.00~a6.9-250129+dfsg-1 (dsc) [2130 B] 184s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe plink2 2.00~a6.9-250129+dfsg-1 (tar) [1569 kB] 184s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe plink2 2.00~a6.9-250129+dfsg-1 (diff) [58.5 kB] 184s gpgv: Signature made Fri Feb 7 17:39:27 2025 UTC 184s gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 184s gpgv: Can't check signature: No public key 184s dpkg-source: warning: cannot verify inline signature for ./plink2_2.00~a6.9-250129+dfsg-1.dsc: no acceptable signature found 185s autopkgtest [02:53:16]: testing package plink2 version 2.00~a6.9-250129+dfsg-1 187s autopkgtest [02:53:18]: build not needed 190s autopkgtest [02:53:21]: test run-unit-test: preparing testbed 192s Reading package lists... 192s Building dependency tree... 192s Reading state information... 193s Starting pkgProblemResolver with broken count: 0 193s Starting 2 pkgProblemResolver with broken count: 0 193s Done 194s The following NEW packages will be installed: 194s libblas3 libdeflate0 libgfortran5 liblapack3 plink2 194s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 194s Need to get 3649 kB of archives. 194s After this operation, 7504 kB of additional disk space will be used. 194s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-4 [126 kB] 194s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 194s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-16ubuntu1 [311 kB] 194s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-4 [2086 kB] 195s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf plink2 armhf 2.00~a6.9-250129+dfsg-1 [1088 kB] 195s Fetched 3649 kB in 1s (3411 kB/s) 195s Selecting previously unselected package libblas3:armhf. 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 60668 files and directories currently installed.) 195s Preparing to unpack .../libblas3_3.12.0-4_armhf.deb ... 195s Unpacking libblas3:armhf (3.12.0-4) ... 195s Selecting previously unselected package libdeflate0:armhf. 195s Preparing to unpack .../libdeflate0_1.23-1_armhf.deb ... 195s Unpacking libdeflate0:armhf (1.23-1) ... 195s Selecting previously unselected package libgfortran5:armhf. 195s Preparing to unpack .../libgfortran5_14.2.0-16ubuntu1_armhf.deb ... 195s Unpacking libgfortran5:armhf (14.2.0-16ubuntu1) ... 195s Selecting previously unselected package liblapack3:armhf. 195s Preparing to unpack .../liblapack3_3.12.0-4_armhf.deb ... 195s Unpacking liblapack3:armhf (3.12.0-4) ... 196s Selecting previously unselected package plink2. 196s Preparing to unpack .../plink2_2.00~a6.9-250129+dfsg-1_armhf.deb ... 196s Unpacking plink2 (2.00~a6.9-250129+dfsg-1) ... 196s Setting up libdeflate0:armhf (1.23-1) ... 196s Setting up libblas3:armhf (3.12.0-4) ... 196s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 196s Setting up libgfortran5:armhf (14.2.0-16ubuntu1) ... 196s Setting up liblapack3:armhf (3.12.0-4) ... 196s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 196s Setting up plink2 (2.00~a6.9-250129+dfsg-1) ... 196s Processing triggers for man-db (2.13.0-1) ... 196s Processing triggers for libc-bin (2.40-4ubuntu1) ... 205s autopkgtest [02:53:36]: test run-unit-test: [----------------------- 207s PLINK v2.0.0-a.6.9 32-bit (29 Jan 2025) cog-genomics.org/plink/2.0/ 207s (C) 2005-2025 Shaun Purcell, Christopher Chang GNU General Public License v3 207s Logging to tmp_data.log. 207s Options in effect: 207s --debug 207s --dummy 33 65537 0.1 dosage-freq=0.1 207s --out tmp_data 207s 207s Start time: Sat Feb 8 02:53:38 2025 207s 15954 MiB RAM detected, ~15928 available; reserving 2047 MiB for main 207s workspace. 207s Using up to 8 compute threads. 207s --dummy: 65k variants written. Dummy data (33 samples, 65537 SNPs) written to tmp_data.pgen + tmp_data.pvar + 207s tmp_data.psam . 207s End time: Sat Feb 8 02:53:38 2025 207s PLINK v2.0.0-a.6.9 32-bit (29 Jan 2025) cog-genomics.org/plink/2.0/ 207s (C) 2005-2025 Shaun Purcell, Christopher Chang GNU General Public License v3 207s Logging to tmp_data2.log. 207s Options in effect: 207s --debug 207s --export vcf vcf-dosage=DS 207s --out tmp_data2 207s --pfile tmp_data 207s 207s Start time: Sat Feb 8 02:53:38 2025 207s 15954 MiB RAM detected, ~15928 available; reserving 2047 MiB for main 207s workspace. 207s Using up to 8 compute threads. 207s 33 samples (33 females, 0 males; 33 founders) loaded from tmp_data.psam. 207s 65537 variants loaded from tmp_data.pvar. 207s 1 binary phenotype loaded (17 cases, 16 controls). 207s --export vcf to tmp_data2.vcf ... 0%0%1%1%2%2%3%3%4%4%5%5%6%6%7%7%8%Warning: At least one VCF allele code violates the official specification; 207s other tools may not accept the file. (Valid codes must either start with a 207s '<', only contain characters in {A,C,G,T,N,a,c,g,t,n}, be an isolated '*', or 207s represent a breakend.) 207s 8%9%9%10%10%11%11%12%12%13%13%14%14%15%15%16%16%17%17%18%18%19%19%20%20%21%21%22%22%23%23%24%24%25%25%26%26%27%27%28%28%29%29%30%30%31%31%32%32%33%33%34%34%35%35%36%36%37%37%38%38%39%39%40%40%41%41%42%42%43%43%44%44%45%45%46%46%47%47%48%48%49%49%50%50%51%51%52%52%53%53%54%54%55%55%56%56%57%57%58%58%59%59%60%60%61%61%62%62%63%63%64%64%65%65%66%66%67%67%68%68%69%69%70%70%71%71%72%72%73%73%74%74%75%75%76%76%77%77%78%78%79%79%80%80%81%81%82%82%83%83%84%84%85%85%86%86%87%87%88%88%89%89%90%90%91%91%92%92%93%93%94%94%95%95%96%96%97%97%98%98%99%done. 207s End time: Sat Feb 8 02:53:38 2025 207s PLINK v2.0.0-a.6.9 32-bit (29 Jan 2025) cog-genomics.org/plink/2.0/ 207s (C) 2005-2025 Shaun Purcell, Christopher Chang GNU General Public License v3 207s Logging to tmp_data2.log. 207s Options in effect: 207s --debug 207s --out tmp_data2 207s --vcf tmp_data2.vcf dosage=DS 207s 207s Start time: Sat Feb 8 02:53:38 2025 207s 15954 MiB RAM detected, ~15928 available; reserving 2047 MiB for main 207s workspace. 207s Using up to 8 compute threads. 207s --vcf: 1k variants scanned. --vcf: 2k variants scanned. --vcf: 3k variants scanned. --vcf: 4k variants scanned. --vcf: 5k variants scanned. --vcf: 6k variants scanned. --vcf: 7k variants scanned. --vcf: 8k variants scanned. --vcf: 9k variants scanned. --vcf: 10k variants scanned. --vcf: 11k variants scanned. --vcf: 12k variants scanned. --vcf: 13k variants scanned. --vcf: 14k variants scanned. --vcf: 15k variants scanned. --vcf: 16k variants scanned. --vcf: 17k variants scanned. --vcf: 18k variants scanned. --vcf: 19k variants scanned. --vcf: 20k variants scanned. --vcf: 21k variants scanned. --vcf: 22k variants scanned. --vcf: 23k variants scanned. --vcf: 24k variants scanned. --vcf: 25k variants scanned. --vcf: 26k variants scanned. --vcf: 27k variants scanned. --vcf: 28k variants scanned. --vcf: 29k variants scanned. --vcf: 30k variants scanned. --vcf: 31k variants scanned. --vcf: 32k variants scanned. --vcf: 33k variants scanned. --vcf: 34k variants scanned. --vcf: 35k variants scanned. --vcf: 36k variants scanned. --vcf: 37k variants scanned. --vcf: 38k variants scanned. --vcf: 39k variants scanned. --vcf: 40k variants scanned. --vcf: 41k variants scanned. --vcf: 42k variants scanned. --vcf: 43k variants scanned. --vcf: 44k variants scanned. --vcf: 45k variants scanned. --vcf: 46k variants scanned. --vcf: 47k variants scanned. --vcf: 48k variants scanned. --vcf: 49k variants scanned. --vcf: 50k variants scanned. --vcf: 51k variants scanned. --vcf: 52k variants scanned. --vcf: 53k variants scanned. --vcf: 54k variants scanned. --vcf: 55k variants scanned. --vcf: 56k variants scanned. --vcf: 57k variants scanned. --vcf: 58k variants scanned. --vcf: 59k variants scanned. --vcf: 60k variants scanned. --vcf: 61k variants scanned. --vcf: 62k variants scanned. --vcf: 63k variants scanned. --vcf: 64k variants scanned. --vcf: 65k variants scanned. --vcf: 65537 variants scanned. 207s --vcf: 32k variants converted.  --vcf: tmp_data2.pgen + tmp_data2.pvar + tmp_data2.psam written. 207s End time: Sat Feb 8 02:53:38 2025 208s autopkgtest [02:53:39]: test run-unit-test: -----------------------] 212s autopkgtest [02:53:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 212s run-unit-test PASS 216s autopkgtest [02:53:47]: @@@@@@@@@@@@@@@@@@@@ summary 216s run-unit-test PASS