0s autopkgtest [18:59:34]: starting date and time: 2024-11-13 18:59:34+0000 0s autopkgtest [18:59:34]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [18:59:34]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.aj6cgnu4/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade picopore --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.240 lxd-armhf-10.145.243.240:autopkgtest/ubuntu/plucky/armhf 53s autopkgtest [19:00:27]: testbed dpkg architecture: armhf 55s autopkgtest [19:00:29]: testbed apt version: 2.9.8 55s autopkgtest [19:00:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 64s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 65s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 65s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [98.3 kB] 65s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [958 kB] 65s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 65s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [101 kB] 65s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [647 kB] 65s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 65s Fetched 1919 kB in 1s (2099 kB/s) 65s Reading package lists... 85s tee: /proc/self/fd/2: Permission denied 106s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 106s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 106s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 106s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 108s Reading package lists... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s Calculating upgrade... 109s The following NEW packages will be installed: 109s python3.13-gdbm 109s The following packages will be upgraded: 109s libgnutls30t64 libjson-glib-1.0-0 libjson-glib-1.0-common libnewt0.52 109s libpython3-stdlib libutempter0 python3 python3-gdbm python3-minimal 109s python3-newt whiptail 109s 11 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 1207 kB of archives. 109s After this operation, 124 kB of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 109s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 109s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 109s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 110s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 110s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 110s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 110s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 110s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 110s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 110s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 110s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 110s Fetched 1207 kB in 1s (2090 kB/s) 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 110s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 110s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Setting up python3-minimal (3.12.7-1) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 111s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 111s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 111s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 111s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 111s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_armhf.deb ... 111s Unpacking libgnutls30t64:armhf (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 111s Setting up libgnutls30t64:armhf (3.8.8-2ubuntu1) ... 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 111s Preparing to unpack .../0-python3-newt_0.52.24-2ubuntu4_armhf.deb ... 111s Unpacking python3-newt:armhf (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 111s Preparing to unpack .../1-libnewt0.52_0.52.24-2ubuntu4_armhf.deb ... 111s Unpacking libnewt0.52:armhf (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 111s Preparing to unpack .../2-whiptail_0.52.24-2ubuntu4_armhf.deb ... 111s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 111s Selecting previously unselected package python3.13-gdbm. 111s Preparing to unpack .../3-python3.13-gdbm_3.13.0-2_armhf.deb ... 111s Unpacking python3.13-gdbm (3.13.0-2) ... 111s Preparing to unpack .../4-python3-gdbm_3.12.7-1_armhf.deb ... 111s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 111s Preparing to unpack .../5-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 111s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 111s Preparing to unpack .../6-libjson-glib-1.0-0_1.10.0+ds-3_armhf.deb ... 111s Unpacking libjson-glib-1.0-0:armhf (1.10.0+ds-3) over (1.10.0+ds-2) ... 111s Preparing to unpack .../7-libutempter0_1.2.1-4_armhf.deb ... 111s Unpacking libutempter0:armhf (1.2.1-4) over (1.2.1-3build1) ... 111s Setting up libnewt0.52:armhf (0.52.24-2ubuntu4) ... 111s Setting up libutempter0:armhf (1.2.1-4) ... 111s Setting up whiptail (0.52.24-2ubuntu4) ... 111s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 111s Setting up python3.13-gdbm (3.13.0-2) ... 111s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 111s Setting up python3 (3.12.7-1) ... 111s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 112s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 112s Setting up python3-gdbm:armhf (3.12.7-1) ... 112s Processing triggers for man-db (2.12.1-3) ... 112s Processing triggers for libc-bin (2.40-1ubuntu3) ... 112s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s autopkgtest [19:01:30]: rebooting testbed after setup commands that affected boot 185s autopkgtest [19:02:39]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 214s autopkgtest [19:03:08]: @@@@@@@@@@@@@@@@@@@@ apt-source picopore 230s Get:1 http://ftpmaster.internal/ubuntu plucky/universe picopore 1.2.0-3 (dsc) [2191 B] 230s Get:2 http://ftpmaster.internal/ubuntu plucky/universe picopore 1.2.0-3 (tar) [6276 kB] 230s Get:3 http://ftpmaster.internal/ubuntu plucky/universe picopore 1.2.0-3 (diff) [5332 B] 230s gpgv: Signature made Fri Dec 15 20:40:34 2023 UTC 230s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 230s gpgv: issuer "tille@debian.org" 230s gpgv: Can't check signature: No public key 230s dpkg-source: warning: cannot verify inline signature for ./picopore_1.2.0-3.dsc: no acceptable signature found 231s autopkgtest [19:03:24]: testing package picopore version 1.2.0-3 233s autopkgtest [19:03:27]: build not needed 236s autopkgtest [19:03:30]: test run-unit-test: preparing testbed 246s Reading package lists... 247s Building dependency tree... 247s Reading state information... 247s Starting pkgProblemResolver with broken count: 0 247s Starting 2 pkgProblemResolver with broken count: 0 247s Done 248s The following additional packages will be installed: 248s hdf5-tools libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 248s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 248s libpython3.13-minimal libpython3.13-stdlib libsz2 picopore python3-all 248s python3-h5py python3-h5py-serial python3-numpy python3-picopore 248s python3-watchdog python3.13 python3.13-minimal 248s Suggested packages: 248s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 248s python3.13-venv python3.13-doc binfmt-support 248s Recommended packages: 248s javascript-common 248s The following NEW packages will be installed: 248s autopkgtest-satdep hdf5-tools libaec0 libblas3 libgfortran5 libhdf5-103-1t64 248s libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 248s liblzf1 libpython3.13-minimal libpython3.13-stdlib libsz2 picopore 248s python3-all python3-h5py python3-h5py-serial python3-numpy python3-picopore 248s python3-watchdog python3.13 python3.13-minimal 248s 0 upgraded, 24 newly installed, 0 to remove and 0 not upgraded. 248s Need to get 15.2 MB/15.2 MB of archives. 248s After this operation, 52.4 MB of additional disk space will be used. 248s Get:1 /tmp/autopkgtest.kVj39b/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [716 B] 248s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 249s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 249s Get:4 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 249s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 249s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 250s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf hdf5-tools armhf 1.10.10+repack-4ubuntu3 [457 kB] 250s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 250s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 250s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 250s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 250s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 250s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-sphinxdoc all 7.4.7-4 [158 kB] 250s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 250s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B] 250s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 250s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 251s Get:18 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py-serial armhf 3.11.0-5ubuntu1 [1061 kB] 251s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py all 3.11.0-5ubuntu1 [7974 B] 251s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-watchdog all 5.0.0-1 [125 kB] 251s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-picopore all 1.2.0-3 [15.6 kB] 251s Get:22 http://ftpmaster.internal/ubuntu plucky/universe armhf picopore all 1.2.0-3 [9878 B] 251s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 251s Get:24 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 251s Fetched 15.2 MB in 3s (5481 kB/s) 251s Selecting previously unselected package libpython3.13-minimal:armhf. 251s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59567 files and directories currently installed.) 251s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ... 251s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 251s Selecting previously unselected package python3.13-minimal. 251s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ... 251s Unpacking python3.13-minimal (3.13.0-2) ... 251s Selecting previously unselected package libaec0:armhf. 251s Preparing to unpack .../02-libaec0_1.1.3-1_armhf.deb ... 251s Unpacking libaec0:armhf (1.1.3-1) ... 252s Selecting previously unselected package libsz2:armhf. 252s Preparing to unpack .../03-libsz2_1.1.3-1_armhf.deb ... 252s Unpacking libsz2:armhf (1.1.3-1) ... 252s Selecting previously unselected package libhdf5-103-1t64:armhf. 252s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 252s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 252s Selecting previously unselected package hdf5-tools. 252s Preparing to unpack .../05-hdf5-tools_1.10.10+repack-4ubuntu3_armhf.deb ... 252s Unpacking hdf5-tools (1.10.10+repack-4ubuntu3) ... 252s Selecting previously unselected package libblas3:armhf. 252s Preparing to unpack .../06-libblas3_3.12.0-3build2_armhf.deb ... 252s Unpacking libblas3:armhf (3.12.0-3build2) ... 252s Selecting previously unselected package libgfortran5:armhf. 252s Preparing to unpack .../07-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 252s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 252s Selecting previously unselected package libhdf5-hl-100t64:armhf. 252s Preparing to unpack .../08-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 252s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 252s Selecting previously unselected package libjs-jquery. 252s Preparing to unpack .../09-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 252s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 252s Selecting previously unselected package libjs-underscore. 252s Preparing to unpack .../10-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 252s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 252s Selecting previously unselected package libjs-sphinxdoc. 252s Preparing to unpack .../11-libjs-sphinxdoc_7.4.7-4_all.deb ... 252s Unpacking libjs-sphinxdoc (7.4.7-4) ... 252s Selecting previously unselected package liblapack3:armhf. 252s Preparing to unpack .../12-liblapack3_3.12.0-3build2_armhf.deb ... 252s Unpacking liblapack3:armhf (3.12.0-3build2) ... 252s Selecting previously unselected package liblzf1:armhf. 252s Preparing to unpack .../13-liblzf1_3.6-4_armhf.deb ... 252s Unpacking liblzf1:armhf (3.6-4) ... 252s Selecting previously unselected package libpython3.13-stdlib:armhf. 252s Preparing to unpack .../14-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 252s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 252s Selecting previously unselected package python3-numpy. 252s Preparing to unpack .../15-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 252s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 253s Selecting previously unselected package python3-h5py-serial. 253s Preparing to unpack .../16-python3-h5py-serial_3.11.0-5ubuntu1_armhf.deb ... 253s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 253s Selecting previously unselected package python3-h5py. 253s Preparing to unpack .../17-python3-h5py_3.11.0-5ubuntu1_all.deb ... 253s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 253s Selecting previously unselected package python3-watchdog. 253s Preparing to unpack .../18-python3-watchdog_5.0.0-1_all.deb ... 253s Unpacking python3-watchdog (5.0.0-1) ... 253s Selecting previously unselected package python3-picopore. 253s Preparing to unpack .../19-python3-picopore_1.2.0-3_all.deb ... 253s Unpacking python3-picopore (1.2.0-3) ... 253s Selecting previously unselected package picopore. 253s Preparing to unpack .../20-picopore_1.2.0-3_all.deb ... 253s Unpacking picopore (1.2.0-3) ... 253s Selecting previously unselected package python3.13. 253s Preparing to unpack .../21-python3.13_3.13.0-2_armhf.deb ... 253s Unpacking python3.13 (3.13.0-2) ... 253s Selecting previously unselected package python3-all. 253s Preparing to unpack .../22-python3-all_3.12.7-1_armhf.deb ... 253s Unpacking python3-all (3.12.7-1) ... 253s Selecting previously unselected package autopkgtest-satdep. 253s Preparing to unpack .../23-1-autopkgtest-satdep.deb ... 253s Unpacking autopkgtest-satdep (0) ... 253s Setting up libaec0:armhf (1.1.3-1) ... 253s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 253s Setting up libblas3:armhf (3.12.0-3build2) ... 253s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 253s Setting up liblzf1:armhf (3.6-4) ... 253s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 253s Setting up python3.13-minimal (3.13.0-2) ... 254s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 254s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... 254s Setting up libsz2:armhf (1.1.3-1) ... 254s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 254s Setting up liblapack3:armhf (3.12.0-3build2) ... 254s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 254s Setting up python3.13 (3.13.0-2) ... 255s Setting up python3-all (3.12.7-1) ... 255s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 260s Setting up libjs-sphinxdoc (7.4.7-4) ... 260s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 260s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 260s Setting up python3-watchdog (5.0.0-1) ... 260s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 261s Setting up hdf5-tools (1.10.10+repack-4ubuntu3) ... 261s Setting up python3-h5py (3.11.0-5ubuntu1) ... 261s Setting up python3-picopore (1.2.0-3) ... 262s Setting up picopore (1.2.0-3) ... 262s Setting up autopkgtest-satdep (0) ... 262s Processing triggers for systemd (256.5-2ubuntu4) ... 262s Processing triggers for man-db (2.12.1-3) ... 262s Processing triggers for libc-bin (2.40-1ubuntu3) ... 279s (Reading database ... 61563 files and directories currently installed.) 279s Removing autopkgtest-satdep (0) ... 285s autopkgtest [19:04:19]: test run-unit-test: [----------------------- 288s Performing lossless compression on 1 files... 288s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 288s .Complete. 288s Original size: 673522 288s Compressed size: 673522 288s Performing lossless decompression on 1 files... 288s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 288s .Complete. 288s Compressed size: 673522 288s Reverted size: 1347044 288s Checking equivalence of /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 288s Complete with 0 errors. 288s Performing lossless compression on 1 files... 288s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 288s .Complete. 288s Original size: 673522 288s Compressed size: 673522 289s Performing deep lossless compression on 1 files... 289s .Complete. 289s Original size: 673522 289s Compressed size: 629000 289s Performing deep lossless decompression on 1 files... 289s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 289s .Complete. 289s Compressed size: 629000 289s Reverted size: 1276128 289s Checking equivalence of /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/albacore_1d_original.fast5 (file 1) and /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.albacore_1d_original.fast5 (file 2)... 289s Complete with 0 errors. 290s Performing deep lossless compression on 1 files... 290s .Complete. 290s Original size: 673522 290s Compressed size: 629000 290s Performing raw compression with FASTQ and summary on 1 files... 290s .Complete. 290s Original size: 673522 290s Compressed size: 119182 290s Performing raw compression with summary and no FASTQ on 1 files... 290s .Complete. 290s Original size: 673522 290s Compressed size: 103635 291s Performing raw compression with FASTQ and no summary on 1 files... 291s .Complete. 291s Original size: 673522 291s Compressed size: 116766 291s Performing raw compression with no summary and no FASTQ on 1 files... 291s .Complete. 291s Original size: 673522 291s Compressed size: 98915 291s Performing raw compression with manual keyword Analyses on 1 files... 292s .Complete. 292s Original size: 673522 292s Compressed size: 98915 292s Performing lossless compression on 1 files... 292s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 292s .Complete. 292s Original size: 2003942 292s Compressed size: 2003942 292s Performing lossless decompression on 1 files... 292s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 292s .Complete. 292s Compressed size: 2003942 292s Reverted size: 4007884 292s Checking equivalence of /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 292s Complete with 0 errors. 293s Performing lossless compression on 1 files... 293s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 293s .Complete. 293s Original size: 2003942 293s Compressed size: 2003942 293s Performing deep lossless compression on 1 files... 293s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 293s .Complete. 293s Original size: 2003942 293s Compressed size: 2003942 293s Performing deep lossless decompression on 1 files... 293s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 293s .Complete. 293s Compressed size: 2003942 293s Reverted size: 4007884 293s Checking equivalence of /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/metrichor_2d_original.fast5 (file 1) and /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 (file 2)... 294s Complete with 0 errors. 294s Performing deep lossless compression on 1 files... 294s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/sample_data/picopore.test.metrichor_2d_original.fast5 294s .Complete. 294s Original size: 2003942 294s Compressed size: 2003942 294s Performing raw compression with FASTQ and summary on 1 files... 294s .Complete. 294s Original size: 2003942 294s Compressed size: 270517 295s Performing raw compression with summary and no FASTQ on 1 files... 295s .Complete. 295s Original size: 2003942 295s Compressed size: 232978 295s Performing raw compression with FASTQ and no summary on 1 files... 295s .Complete. 295s Original size: 2003942 295s Compressed size: 261197 295s Performing raw compression with no summary and no FASTQ on 1 files... 296s .Complete. 296s Original size: 2003942 296s Compressed size: 219602 296s Performing raw compression with manual keyword Analyses on 1 files... 296s .Complete. 296s Original size: 2003942 296s Compressed size: 219602 297s Performing real time lossless compression... 297s Monitoring /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 297s No files found under /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime 306s ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime/albacore_1d_original.fast5 316s .ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 326s . 326s Exiting Picopore. 326s Processing in-progress files. Press Ctrl-C again to abort. 326s Complete. 326s Original size: 2677464 326s Compressed size: 2677464 327s Performing real time deep lossless compression... 327s Monitoring /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 327s No files found under /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime 347s .ERROR: 'Dataset' object has no attribute 'value' on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 357s . 357s Exiting Picopore. 357s Processing in-progress files. Press Ctrl-C again to abort. 357s Complete. 357s Original size: 2677464 357s Compressed size: 2632942 358s Performing real time raw compression with FASTQ and summary... 358s Monitoring /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 358s No files found under /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime 377s .ERROR: Unable to open file (truncated file: eof = 1835008, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 387s . 387s Exiting Picopore. 387s Processing in-progress files. Press Ctrl-C again to abort. 387s Complete. 387s Original size: 1525490 387s Compressed size: 2123124 388s Performing real time raw compression with summary and no FASTQ... 388s Monitoring /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 388s No files found under /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime 418s .. 418s Exiting Picopore. 418s Processing in-progress files. Press Ctrl-C again to abort. 418s Complete. 418s Original size: 2639602 418s Compressed size: 336613 420s Performing real time raw compression with FASTQ and no summary... 420s Monitoring /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 420s No files found under /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime 438s .ERROR: Unable to open file (truncated file: eof = 1146880, sblock->base_addr = 0, stored_eof = 2003942) on file /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime/metrichor_2d_original.fast5 448s . 448s Exiting Picopore. 448s Processing in-progress files. Press Ctrl-C again to abort. 448s Complete. 448s Original size: 1066738 448s Compressed size: 2120708 449s Performing real time raw compression with no summary and no FASTQ... 449s Monitoring /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 449s No files found under /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime 479s .. 479s Exiting Picopore. 479s Processing in-progress files. Press Ctrl-C again to abort. 479s Complete. 479s Original size: 2677464 479s Compressed size: 318517 480s Performing real time raw compression with manual keyword Analyses... 480s Monitoring /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime in real time. Press Ctrl+C to exit. 480s No files found under /tmp/autopkgtest.kVj39b/autopkgtest_tmp/realtime 509s .. 509s Exiting Picopore. 509s Processing in-progress files. Press Ctrl-C again to abort. 509s Complete. 509s Original size: 2677464 509s Compressed size: 318517 510s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/albacore_1d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/albacore_1d_original.fast5 510s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/albacore_1d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/albacore_1d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/albacore_1d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/albacore_1d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/albacore_1d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/albacore_1d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/albacore_1d_original.fast5 510s python3 -m picopore -y --print-every 1 --test --mode lossless sample_data/metrichor_2d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode lossless sample_data/metrichor_2d_original.fast5 510s python3 -m picopore -y --print-every 1 --test --mode deep-lossless sample_data/metrichor_2d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode deep-lossless sample_data/metrichor_2d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --summary sample_data/metrichor_2d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --summary --no-fastq sample_data/metrichor_2d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --fastq --no-summary sample_data/metrichor_2d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --no-fastq --no-summary sample_data/metrichor_2d_original.fast5 510s python3 -m picopore -y --print-every 1 --prefix picopore.test --mode raw --manual Analyses sample_data/metrichor_2d_original.fast5 510s python3 -m picopore -y --realtime --print-every 1 --mode lossless realtime 510s python3 -m picopore -y --realtime --print-every 1 --mode deep-lossless realtime 510s python3 -m picopore -y --realtime --print-every 1 --fastq --summary --mode raw realtime 510s python3 -m picopore -y --realtime --print-every 1 --summary --no-fastq --mode raw realtime 510s python3 -m picopore -y --realtime --print-every 1 --fastq --no-summary --mode raw realtime 510s python3 -m picopore -y --realtime --print-every 1 --no-fastq --no-summary --mode raw realtime 510s python3 -m picopore -y --realtime --print-every 1 --manual Analyses --mode raw realtime 510s PASS 510s autopkgtest [19:08:04]: test run-unit-test: -----------------------] 514s autopkgtest [19:08:08]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 514s run-unit-test PASS 518s autopkgtest [19:08:12]: test autodep8-python3: preparing testbed 573s autopkgtest [19:09:07]: testbed dpkg architecture: armhf 575s autopkgtest [19:09:09]: testbed apt version: 2.9.8 575s autopkgtest [19:09:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 583s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 583s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [958 kB] 584s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 584s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 584s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [98.3 kB] 584s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [101 kB] 584s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [647 kB] 584s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 584s Fetched 1919 kB in 1s (2087 kB/s) 584s Reading package lists... 600s tee: /proc/self/fd/2: Permission denied 621s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 622s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 622s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 622s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 623s Reading package lists... 623s Reading package lists... 624s Building dependency tree... 624s Reading state information... 625s Calculating upgrade... 625s The following NEW packages will be installed: 625s python3.13-gdbm 625s The following packages will be upgraded: 625s libgnutls30t64 libjson-glib-1.0-0 libjson-glib-1.0-common libnewt0.52 625s libpython3-stdlib libutempter0 python3 python3-gdbm python3-minimal 625s python3-newt whiptail 625s 11 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 625s Need to get 1207 kB of archives. 625s After this operation, 124 kB of additional disk space will be used. 625s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 626s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 626s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 626s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 626s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-newt armhf 0.52.24-2ubuntu4 [19.7 kB] 626s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libnewt0.52 armhf 0.52.24-2ubuntu4 [39.2 kB] 626s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf whiptail armhf 0.52.24-2ubuntu4 [17.2 kB] 626s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 626s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 626s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 626s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 626s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 627s Fetched 1207 kB in 1s (2113 kB/s) 627s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 627s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 627s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 627s Setting up python3-minimal (3.12.7-1) ... 627s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 627s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 627s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 627s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 627s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 627s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_armhf.deb ... 627s Unpacking libgnutls30t64:armhf (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 627s Setting up libgnutls30t64:armhf (3.8.8-2ubuntu1) ... 627s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 627s Preparing to unpack .../0-python3-newt_0.52.24-2ubuntu4_armhf.deb ... 628s Unpacking python3-newt:armhf (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 628s Preparing to unpack .../1-libnewt0.52_0.52.24-2ubuntu4_armhf.deb ... 628s Unpacking libnewt0.52:armhf (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 628s Preparing to unpack .../2-whiptail_0.52.24-2ubuntu4_armhf.deb ... 628s Unpacking whiptail (0.52.24-2ubuntu4) over (0.52.24-2ubuntu3) ... 628s Selecting previously unselected package python3.13-gdbm. 628s Preparing to unpack .../3-python3.13-gdbm_3.13.0-2_armhf.deb ... 628s Unpacking python3.13-gdbm (3.13.0-2) ... 628s Preparing to unpack .../4-python3-gdbm_3.12.7-1_armhf.deb ... 628s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 628s Preparing to unpack .../5-libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 628s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 628s Preparing to unpack .../6-libjson-glib-1.0-0_1.10.0+ds-3_armhf.deb ... 628s Unpacking libjson-glib-1.0-0:armhf (1.10.0+ds-3) over (1.10.0+ds-2) ... 628s Preparing to unpack .../7-libutempter0_1.2.1-4_armhf.deb ... 628s Unpacking libutempter0:armhf (1.2.1-4) over (1.2.1-3build1) ... 628s Setting up libnewt0.52:armhf (0.52.24-2ubuntu4) ... 628s Setting up libutempter0:armhf (1.2.1-4) ... 628s Setting up whiptail (0.52.24-2ubuntu4) ... 628s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 628s Setting up python3.13-gdbm (3.13.0-2) ... 628s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 628s Setting up python3 (3.12.7-1) ... 629s Setting up python3-newt:armhf (0.52.24-2ubuntu4) ... 629s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 629s Setting up python3-gdbm:armhf (3.12.7-1) ... 629s Processing triggers for man-db (2.12.1-3) ... 629s Processing triggers for libc-bin (2.40-1ubuntu3) ... 630s Reading package lists... 630s Building dependency tree... 630s Reading state information... 631s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 633s autopkgtest [19:10:07]: rebooting testbed after setup commands that affected boot 740s Reading package lists... 740s Building dependency tree... 740s Reading state information... 741s Starting pkgProblemResolver with broken count: 0 741s Starting 2 pkgProblemResolver with broken count: 0 741s Done 742s The following additional packages will be installed: 742s hdf5-tools libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 742s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblzf1 742s libpython3.13-minimal libpython3.13-stdlib libsz2 python3-all python3-h5py 742s python3-h5py-serial python3-numpy python3-picopore python3-watchdog 742s python3.13 python3.13-minimal 742s Suggested packages: 742s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 742s python3.13-venv python3.13-doc binfmt-support 742s Recommended packages: 742s javascript-common 742s The following NEW packages will be installed: 742s autopkgtest-satdep hdf5-tools libaec0 libblas3 libgfortran5 libhdf5-103-1t64 742s libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 742s liblzf1 libpython3.13-minimal libpython3.13-stdlib libsz2 python3-all 742s python3-h5py python3-h5py-serial python3-numpy python3-picopore 742s python3-watchdog python3.13 python3.13-minimal 742s 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. 742s Need to get 15.2 MB/15.2 MB of archives. 742s After this operation, 52.4 MB of additional disk space will be used. 742s Get:1 /tmp/autopkgtest.kVj39b/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B] 742s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 743s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 743s Get:4 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 743s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 743s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 743s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf hdf5-tools armhf 1.10.10+repack-4ubuntu3 [457 kB] 743s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 743s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 743s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 743s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 743s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 743s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-sphinxdoc all 7.4.7-4 [158 kB] 743s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 743s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B] 743s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 743s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 743s Get:18 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 743s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 743s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py-serial armhf 3.11.0-5ubuntu1 [1061 kB] 743s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py all 3.11.0-5ubuntu1 [7974 B] 743s Get:22 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-watchdog all 5.0.0-1 [125 kB] 743s Get:23 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-picopore all 1.2.0-3 [15.6 kB] 744s Fetched 15.2 MB in 1s (12.3 MB/s) 744s Selecting previously unselected package libpython3.13-minimal:armhf. 744s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59567 files and directories currently installed.) 744s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ... 744s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 744s Selecting previously unselected package python3.13-minimal. 744s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ... 744s Unpacking python3.13-minimal (3.13.0-2) ... 744s Selecting previously unselected package libaec0:armhf. 744s Preparing to unpack .../02-libaec0_1.1.3-1_armhf.deb ... 744s Unpacking libaec0:armhf (1.1.3-1) ... 744s Selecting previously unselected package libsz2:armhf. 744s Preparing to unpack .../03-libsz2_1.1.3-1_armhf.deb ... 744s Unpacking libsz2:armhf (1.1.3-1) ... 744s Selecting previously unselected package libhdf5-103-1t64:armhf. 744s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 744s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 744s Selecting previously unselected package hdf5-tools. 744s Preparing to unpack .../05-hdf5-tools_1.10.10+repack-4ubuntu3_armhf.deb ... 744s Unpacking hdf5-tools (1.10.10+repack-4ubuntu3) ... 744s Selecting previously unselected package libblas3:armhf. 744s Preparing to unpack .../06-libblas3_3.12.0-3build2_armhf.deb ... 744s Unpacking libblas3:armhf (3.12.0-3build2) ... 744s Selecting previously unselected package libgfortran5:armhf. 744s Preparing to unpack .../07-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 744s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 745s Selecting previously unselected package libhdf5-hl-100t64:armhf. 745s Preparing to unpack .../08-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 745s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 745s Selecting previously unselected package libjs-jquery. 745s Preparing to unpack .../09-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 745s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 745s Selecting previously unselected package libjs-underscore. 745s Preparing to unpack .../10-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 745s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 745s Selecting previously unselected package libjs-sphinxdoc. 745s Preparing to unpack .../11-libjs-sphinxdoc_7.4.7-4_all.deb ... 745s Unpacking libjs-sphinxdoc (7.4.7-4) ... 745s Selecting previously unselected package liblapack3:armhf. 745s Preparing to unpack .../12-liblapack3_3.12.0-3build2_armhf.deb ... 745s Unpacking liblapack3:armhf (3.12.0-3build2) ... 745s Selecting previously unselected package liblzf1:armhf. 745s Preparing to unpack .../13-liblzf1_3.6-4_armhf.deb ... 745s Unpacking liblzf1:armhf (3.6-4) ... 745s Selecting previously unselected package libpython3.13-stdlib:armhf. 745s Preparing to unpack .../14-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 745s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 745s Selecting previously unselected package python3.13. 745s Preparing to unpack .../15-python3.13_3.13.0-2_armhf.deb ... 745s Unpacking python3.13 (3.13.0-2) ... 745s Selecting previously unselected package python3-all. 745s Preparing to unpack .../16-python3-all_3.12.7-1_armhf.deb ... 745s Unpacking python3-all (3.12.7-1) ... 745s Selecting previously unselected package python3-numpy. 745s Preparing to unpack .../17-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 745s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 745s Selecting previously unselected package python3-h5py-serial. 745s Preparing to unpack .../18-python3-h5py-serial_3.11.0-5ubuntu1_armhf.deb ... 745s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 745s Selecting previously unselected package python3-h5py. 745s Preparing to unpack .../19-python3-h5py_3.11.0-5ubuntu1_all.deb ... 745s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 745s Selecting previously unselected package python3-watchdog. 746s Preparing to unpack .../20-python3-watchdog_5.0.0-1_all.deb ... 746s Unpacking python3-watchdog (5.0.0-1) ... 746s Selecting previously unselected package python3-picopore. 746s Preparing to unpack .../21-python3-picopore_1.2.0-3_all.deb ... 746s Unpacking python3-picopore (1.2.0-3) ... 746s Selecting previously unselected package autopkgtest-satdep. 746s Preparing to unpack .../22-2-autopkgtest-satdep.deb ... 746s Unpacking autopkgtest-satdep (0) ... 746s Setting up libaec0:armhf (1.1.3-1) ... 746s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 746s Setting up libblas3:armhf (3.12.0-3build2) ... 746s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 746s Setting up liblzf1:armhf (3.6-4) ... 746s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 746s Setting up python3.13-minimal (3.13.0-2) ... 747s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 747s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... 747s Setting up libsz2:armhf (1.1.3-1) ... 747s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 747s Setting up liblapack3:armhf (3.12.0-3build2) ... 747s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 747s Setting up python3.13 (3.13.0-2) ... 748s Setting up python3-all (3.12.7-1) ... 748s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 753s Setting up libjs-sphinxdoc (7.4.7-4) ... 753s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 753s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 753s Setting up python3-watchdog (5.0.0-1) ... 754s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 754s Setting up hdf5-tools (1.10.10+repack-4ubuntu3) ... 754s Setting up python3-h5py (3.11.0-5ubuntu1) ... 754s Setting up python3-picopore (1.2.0-3) ... 755s Setting up autopkgtest-satdep (0) ... 755s Processing triggers for systemd (256.5-2ubuntu4) ... 755s Processing triggers for man-db (2.12.1-3) ... 755s Processing triggers for libc-bin (2.40-1ubuntu3) ... 770s (Reading database ... 61551 files and directories currently installed.) 770s Removing autopkgtest-satdep (0) ... 783s autopkgtest [19:12:37]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import picopore; print(picopore)" ; done 783s autopkgtest [19:12:37]: test autodep8-python3: [----------------------- 785s Testing with python3.13: 785s Traceback (most recent call last): 785s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 785s from . import multiarray 785s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 785s from . import overrides 785s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 785s from numpy.core._multiarray_umath import ( 785s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 785s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 785s 785s During handling of the above exception, another exception occurred: 785s 785s Traceback (most recent call last): 785s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 785s from numpy.__config__ import show as show_config 785s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 785s from numpy.core._multiarray_umath import ( 785s ...<3 lines>... 785s ) 785s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 785s raise ImportError(msg) 785s ImportError: 785s 785s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 785s 785s Importing the numpy C-extensions failed. This error can happen for 785s many reasons, often due to issues with your setup or how NumPy was 785s installed. 785s 785s We have compiled some common reasons and troubleshooting tips at: 785s 785s https://numpy.org/devdocs/user/troubleshooting-importerror.html 785s 785s Please note and check the following: 785s 785s * The Python version is: Python3.13 from "/usr/bin/python3.13" 785s * The NumPy version is: "1.26.4" 785s 785s and make sure that they are the versions you expect. 785s Please carefully study the documentation linked above for further help. 785s 785s Original error was: No module named 'numpy.core._multiarray_umath' 785s 785s 785s The above exception was the direct cause of the following exception: 785s 785s Traceback (most recent call last): 785s File "", line 1, in 785s import picopore; print(picopore) 785s ^^^^^^^^^^^^^^^ 785s File "/usr/lib/python3/dist-packages/picopore/__init__.py", line 2, in 785s from picopore.util import log 785s File "/usr/lib/python3/dist-packages/picopore/util.py", line 19, in 785s import numpy as np 785s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 785s raise ImportError(msg) from e 785s ImportError: Error importing numpy: you should not try to import numpy from 785s its source directory; please exit the numpy source tree, and relaunch 785s your python interpreter from there. 785s autopkgtest [19:12:39]: test autodep8-python3: -----------------------] 789s autopkgtest [19:12:43]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 789s autodep8-python3 FAIL non-zero exit status 1 793s autopkgtest [19:12:47]: @@@@@@@@@@@@@@@@@@@@ summary 793s run-unit-test PASS 793s autodep8-python3 FAIL non-zero exit status 1