0s autopkgtest [15:15:47]: starting date and time: 2025-03-15 15:15:47+0000 0s autopkgtest [15:15:47]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:15:47]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6j9p5inj/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade phylip --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.239 lxd-armhf-10.145.243.239:autopkgtest/ubuntu/plucky/armhf 22s autopkgtest [15:16:09]: testbed dpkg architecture: armhf 24s autopkgtest [15:16:11]: testbed apt version: 2.9.33 28s autopkgtest [15:16:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [15:16:17]: testbed release detected to be: None 38s autopkgtest [15:16:25]: updating testbed package index (apt update) 40s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 40s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 40s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 41s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 41s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 41s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 41s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 41s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [81.0 kB] 41s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1944 B] 41s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 41s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [326 kB] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [12.1 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [332 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 42s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 55s Get:17 http://ftpmaster.internal/ubuntu plucky/main Sources [1400 kB] 56s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 57s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 57s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 57s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 67s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 69s Fetched 41.0 MB in 29s (1430 kB/s) 71s Reading package lists... 77s autopkgtest [15:17:04]: upgrading testbed (apt dist-upgrade and autopurge) 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 81s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 81s Starting 2 pkgProblemResolver with broken count: 0 81s Done 82s Entering ResolveByKeep 83s 83s Calculating upgrade... 84s The following packages will be upgraded: 84s libc-bin libc6 locales python3-jinja2 sos strace 84s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Need to get 8642 kB of archives. 84s After this operation, 23.6 kB of additional disk space will be used. 84s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 87s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 87s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 90s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 90s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 91s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 92s Preconfiguring packages ... 92s Fetched 8642 kB in 7s (1190 kB/s) 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 92s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 92s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 93s Setting up libc6:armhf (2.41-1ubuntu2) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 93s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 93s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 93s Setting up libc-bin (2.41-1ubuntu2) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 94s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 94s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 94s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 94s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 94s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 94s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 94s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 95s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 95s Setting up sos (4.9.0-5) ... 96s Setting up locales (2.41-1ubuntu2) ... 97s Generating locales (this might take a while)... 101s en_US.UTF-8... done 101s Generation complete. 101s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 102s Setting up strace (6.13+ds-1ubuntu1) ... 102s Processing triggers for man-db (2.13.0-1) ... 103s Processing triggers for systemd (257.3-1ubuntu3) ... 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Starting pkgProblemResolver with broken count: 0 108s Starting 2 pkgProblemResolver with broken count: 0 108s Done 108s Solving dependencies... 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s autopkgtest [15:17:39]: rebooting testbed after setup commands that affected boot 156s autopkgtest [15:18:23]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 182s autopkgtest [15:18:49]: @@@@@@@@@@@@@@@@@@@@ apt-source phylip 198s Get:1 http://ftpmaster.internal/ubuntu plucky/universe phylip 1:3.697+dfsg-4build1 (dsc) [2253 B] 198s Get:2 http://ftpmaster.internal/ubuntu plucky/universe phylip 1:3.697+dfsg-4build1 (tar) [1163 kB] 198s Get:3 http://ftpmaster.internal/ubuntu plucky/universe phylip 1:3.697+dfsg-4build1 (diff) [13.9 kB] 198s gpgv: Signature made Mon Apr 1 07:09:57 2024 UTC 198s gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 198s gpgv: Can't check signature: No public key 198s dpkg-source: warning: cannot verify inline signature for ./phylip_3.697+dfsg-4build1.dsc: no acceptable signature found 198s autopkgtest [15:19:05]: testing package phylip version 1:3.697+dfsg-4build1 201s autopkgtest [15:19:08]: build not needed 203s autopkgtest [15:19:10]: test run-unit-test: preparing testbed 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s Starting pkgProblemResolver with broken count: 0 207s Starting 2 pkgProblemResolver with broken count: 0 207s Done 208s The following NEW packages will be installed: 208s phylip phylip-doc 209s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 209s Need to get 1346 kB of archives. 209s After this operation, 5160 kB of additional disk space will be used. 209s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf phylip armhf 1:3.697+dfsg-4build1 [876 kB] 209s Get:2 http://ftpmaster.internal/ubuntu plucky/universe armhf phylip-doc all 1:3.697+dfsg-4build1 [470 kB] 210s Fetched 1346 kB in 1s (1880 kB/s) 210s Selecting previously unselected package phylip. 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 210s Preparing to unpack .../phylip_1%3a3.697+dfsg-4build1_armhf.deb ... 210s Unpacking phylip (1:3.697+dfsg-4build1) ... 210s Selecting previously unselected package phylip-doc. 210s Preparing to unpack .../phylip-doc_1%3a3.697+dfsg-4build1_all.deb ... 210s Unpacking phylip-doc (1:3.697+dfsg-4build1) ... 210s Setting up phylip (1:3.697+dfsg-4build1) ... 210s Setting up phylip-doc (1:3.697+dfsg-4build1) ... 210s Processing triggers for man-db (2.13.0-1) ... 210s Processing triggers for libc-bin (2.41-1ubuntu2) ... 222s autopkgtest [15:19:29]: test run-unit-test: [----------------------- 224s rm -f infile 224s ln -s dna.data infile 224s make testprog PROGRAM=dnapars 224s make[1]: Entering directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s echo 0 > params 224s echo y >> params 224s phylip dnapars < params > dnapars.out 224s rm -f outtree outfile 224s make[1]: Leaving directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s make testprog PROGRAM=dnaml 224s make[1]: Entering directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s echo 0 > params 224s echo y >> params 224s phylip dnaml < params > dnaml.out 224s rm -f outtree outfile 224s make[1]: Leaving directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s make testprog PROGRAM=dnadist 224s make[1]: Entering directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s echo 0 > params 224s echo y >> params 224s phylip dnadist < params > dnadist.out 224s rm -f outtree outfile 224s make[1]: Leaving directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s rm -f infile 224s ln -s prot.data infile 224s make testprog PROGRAM=protpars 224s make[1]: Entering directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s echo 0 > params 224s echo y >> params 224s phylip protpars < params > protpars.out 224s rm -f outtree outfile 224s make[1]: Leaving directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s make testprog PROGRAM=protdist 224s make[1]: Entering directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s echo 0 > params 224s echo y >> params 224s phylip protdist < params > protdist.out 224s rm -f outtree outfile 224s make[1]: Leaving directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s rm -f infile 224s ln -s distance.data infile 224s make testprog PROGRAM=neighbor 224s make[1]: Entering directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s echo 0 > params 224s echo y >> params 224s phylip neighbor < params > neighbor.out 224s rm -f outtree outfile 224s make[1]: Leaving directory '/tmp/autopkgtest.FsGwgu/autopkgtest_tmp/tests' 224s rm -f intree 224s ln -s tree.data intree 224s echo 0 > params 224s echo l >> params 224s echo m >> params 224s echo y >> params 224s echo r >> params 224s phylip drawtree < params > drawtree.out 224s phylip drawgram < params > drawgram.out 224s PASS 224s autopkgtest [15:19:31]: test run-unit-test: -----------------------] 229s run-unit-test PASS 229s autopkgtest [15:19:36]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 232s autopkgtest [15:19:39]: @@@@@@@@@@@@@@@@@@@@ summary 232s run-unit-test PASS