0s autopkgtest [13:47:22]: starting date and time: 2025-03-15 13:47:22+0000 0s autopkgtest [13:47:22]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [13:47:22]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kyqjhndf/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade phipack --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.171 lxd-armhf-10.145.243.171:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [13:47:43]: testbed dpkg architecture: armhf 23s autopkgtest [13:47:45]: testbed apt version: 2.9.33 26s autopkgtest [13:47:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [13:47:50]: testbed release detected to be: None 36s autopkgtest [13:47:58]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 39s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 39s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 39s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 40s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 40s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 41s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 41s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [81.0 kB] 41s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1944 B] 41s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 41s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [326 kB] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [12.1 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [332 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 41s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 64s Get:17 http://ftpmaster.internal/ubuntu plucky/main Sources [1400 kB] 65s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 67s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 67s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 67s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 84s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 87s Fetched 41.0 MB in 48s (856 kB/s) 88s Reading package lists... 94s autopkgtest [13:48:56]: upgrading testbed (apt dist-upgrade and autopurge) 96s Reading package lists... 97s Building dependency tree... 97s Reading state information... 98s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 98s Starting 2 pkgProblemResolver with broken count: 0 98s Done 100s Entering ResolveByKeep 100s 100s Calculating upgrade... 101s The following packages will be upgraded: 101s libc-bin libc6 locales python3-jinja2 sos strace 102s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Need to get 8642 kB of archives. 102s After this operation, 23.6 kB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 105s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 111s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 112s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 112s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 113s Preconfiguring packages ... 113s Fetched 8642 kB in 11s (772 kB/s) 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 114s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 114s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 114s Setting up libc6:armhf (2.41-1ubuntu2) ... 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 114s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 114s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 114s Setting up libc-bin (2.41-1ubuntu2) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 115s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 115s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 115s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 115s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 115s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 115s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 116s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 116s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 116s Setting up sos (4.9.0-5) ... 117s Setting up locales (2.41-1ubuntu2) ... 118s Generating locales (this might take a while)... 121s en_US.UTF-8... done 121s Generation complete. 121s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 122s Setting up strace (6.13+ds-1ubuntu1) ... 122s Processing triggers for man-db (2.13.0-1) ... 123s Processing triggers for systemd (257.3-1ubuntu3) ... 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Starting pkgProblemResolver with broken count: 0 127s Starting 2 pkgProblemResolver with broken count: 0 127s Done 127s Solving dependencies... 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s autopkgtest [13:49:32]: rebooting testbed after setup commands that affected boot 170s autopkgtest [13:50:12]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 195s autopkgtest [13:50:37]: @@@@@@@@@@@@@@@@@@@@ apt-source phipack 205s Get:1 http://ftpmaster.internal/ubuntu plucky/universe phipack 0.0.20160614-5 (dsc) [2021 B] 205s Get:2 http://ftpmaster.internal/ubuntu plucky/universe phipack 0.0.20160614-5 (tar) [54.2 kB] 205s Get:3 http://ftpmaster.internal/ubuntu plucky/universe phipack 0.0.20160614-5 (diff) [6792 B] 206s gpgv: Signature made Wed Sep 9 06:32:48 2020 UTC 206s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 206s gpgv: issuer "tille@debian.org" 206s gpgv: Can't check signature: No public key 206s dpkg-source: warning: cannot verify inline signature for ./phipack_0.0.20160614-5.dsc: no acceptable signature found 206s autopkgtest [13:50:48]: testing package phipack version 0.0.20160614-5 208s autopkgtest [13:50:50]: build not needed 210s autopkgtest [13:50:52]: test run-unit-test: preparing testbed 212s Reading package lists... 212s Building dependency tree... 212s Reading state information... 213s Starting pkgProblemResolver with broken count: 0 213s Starting 2 pkgProblemResolver with broken count: 0 213s Done 215s The following NEW packages will be installed: 215s phipack 215s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 215s Need to get 45.9 kB of archives. 215s After this operation, 194 kB of additional disk space will be used. 215s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf phipack armhf 0.0.20160614-5 [45.9 kB] 216s Fetched 45.9 kB in 0s (150 kB/s) 216s Selecting previously unselected package phipack. 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 216s Preparing to unpack .../phipack_0.0.20160614-5_armhf.deb ... 216s Unpacking phipack (0.0.20160614-5) ... 216s Setting up phipack (0.0.20160614-5) ... 216s Processing triggers for man-db (2.13.0-1) ... 224s autopkgtest [13:51:06]: test run-unit-test: [----------------------- 226s Run test for functionality ... 226s Reading sequence file noro.fasta 226s Found 25 sequences of length 1617 226s Alignment looks like a valid DNA alignment. 226s Estimated diversity is (pairwise deletion - ignoring missing/ambig): 2.2% 226s Found 103 informative sites. 226s Writing alignment of informative sites to: Phi.inf.sites 226s Writing list of informative sites to: Phi.inf.list 226s Calculating all pairwise incompatibilities... 226s Done: 0.0% 99.9%100.0% 226s 226s Using a window size of 100 with k as 6 226s 226s Calculating analytical mean and variance 226s 226s Outputting incompatibility matrix to file matrix.ppm 226s 226s **p-Value(s)** 226s ---------- 226s 226s PHI (Normal): 2.32e-03 226s 226s Reading sequence file rana.fasta 226s Found 8 sequences of length 1143 226s Alignment looks like a valid OTHER alignment. 226s 226s PHI is calculated with w as 100 226s 226s Checking for recombination using a window size of 1000 and a step size of 25 226s 226s Checking for recombination at 500 between 0 and 1000 226s PHI (Normal): 6.18e-13 226s Checking for recombination at 525 between 25 and 1025 226s PHI (Normal): 1.38e-14 226s Checking for recombination at 550 between 50 and 1050 226s PHI (Normal): 6.66e-18 226s Checking for recombination at 575 between 75 and 1075 226s PHI (Normal): 6.42e-20 226s Checking for recombination at 600 between 100 and 1100 226s PHI (Normal): 7.36e-24 226s Checking for recombination at 625 between 125 and 1125 226s PHI (Normal): 2.15e-28 226s Number of tests performed is 6 226s 226s 227s 15 March 2025 01:51:08 PM 227s 227s PPMA_2_BMP: 227s 227s Compiled on Sep 9 2020 at 06:30:55. 227s 227s Convert a NetPBM ASCII PPM file to Microsoft BMP format. 227s 227s PPMA_2_BMP: 227s XSIZE = 685. 227s YSIZE = 685. 227s 227s PPMA_2_BMP: 227s Flipping data orientation. 227s 227s PPMA_2_BMP: 227s Normal end of translation. 227s 227s PPMA_2_BMP: 227s Normal end of execution. 227s 227s 15 March 2025 01:51:09 PM 227s PASS 227s autopkgtest [13:51:09]: test run-unit-test: -----------------------] 231s autopkgtest [13:51:13]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 231s run-unit-test PASS 235s autopkgtest [13:51:17]: @@@@@@@@@@@@@@@@@@@@ summary 235s run-unit-test PASS