0s autopkgtest [15:10:36]: starting date and time: 2025-03-15 15:10:36+0000 0s autopkgtest [15:10:36]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [15:10:36]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.80xd1zwy/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade pbsim --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.240 lxd-armhf-10.145.243.240:autopkgtest/ubuntu/plucky/armhf 21s autopkgtest [15:10:57]: testbed dpkg architecture: armhf 23s autopkgtest [15:10:59]: testbed apt version: 2.9.33 26s autopkgtest [15:11:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 28s autopkgtest [15:11:04]: testbed release detected to be: None 36s autopkgtest [15:11:12]: updating testbed package index (apt update) 38s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 39s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 39s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 39s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 40s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 40s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 40s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 40s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [81.0 kB] 40s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1944 B] 40s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 40s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [326 kB] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [12.1 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [332 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1400 kB] 42s Get:16 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 43s Get:17 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 67s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 69s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 69s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 69s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 83s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 85s Fetched 41.0 MB in 47s (876 kB/s) 86s Reading package lists... 98s autopkgtest [15:12:14]: upgrading testbed (apt dist-upgrade and autopurge) 100s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 102s Starting 2 pkgProblemResolver with broken count: 0 102s Done 103s Entering ResolveByKeep 103s 103s Calculating upgrade... 103s The following packages will be upgraded: 103s libc-bin libc6 locales python3-jinja2 sos strace 104s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 8642 kB of archives. 104s After this operation, 23.6 kB of additional disk space will be used. 104s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 107s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 110s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 111s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 111s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 111s Preconfiguring packages ... 111s Fetched 8642 kB in 7s (1159 kB/s) 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 112s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 112s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Setting up libc6:armhf (2.41-1ubuntu2) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 112s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 112s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Setting up libc-bin (2.41-1ubuntu2) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 113s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 113s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 113s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 113s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 113s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 113s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 113s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 113s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 113s Setting up sos (4.9.0-5) ... 114s Setting up locales (2.41-1ubuntu2) ... 115s Generating locales (this might take a while)... 116s en_US.UTF-8... done 116s Generation complete. 116s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 117s Setting up strace (6.13+ds-1ubuntu1) ... 117s Processing triggers for man-db (2.13.0-1) ... 118s Processing triggers for systemd (257.3-1ubuntu3) ... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 121s Starting pkgProblemResolver with broken count: 0 121s Starting 2 pkgProblemResolver with broken count: 0 121s Done 121s Solving dependencies... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s autopkgtest [15:12:40]: rebooting testbed after setup commands that affected boot 165s autopkgtest [15:13:21]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 191s autopkgtest [15:13:47]: @@@@@@@@@@@@@@@@@@@@ apt-source pbsim 207s Get:1 http://ftpmaster.internal/ubuntu plucky/universe pbsim 1.0.3+git20180330.e014b1d+dfsg-3 (dsc) [2138 B] 207s Get:2 http://ftpmaster.internal/ubuntu plucky/universe pbsim 1.0.3+git20180330.e014b1d+dfsg-3 (tar) [5305 kB] 207s Get:3 http://ftpmaster.internal/ubuntu plucky/universe pbsim 1.0.3+git20180330.e014b1d+dfsg-3 (diff) [80.2 kB] 207s gpgv: Signature made Wed Mar 1 06:56:30 2023 UTC 207s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 207s gpgv: issuer "tille@debian.org" 207s gpgv: Can't check signature: No public key 207s dpkg-source: warning: cannot verify inline signature for ./pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc: no acceptable signature found 207s autopkgtest [15:14:03]: testing package pbsim version 1.0.3+git20180330.e014b1d+dfsg-3 210s autopkgtest [15:14:06]: build not needed 212s autopkgtest [15:14:08]: test run: preparing testbed 214s Reading package lists... 214s Building dependency tree... 214s Reading state information... 215s Starting pkgProblemResolver with broken count: 0 215s Starting 2 pkgProblemResolver with broken count: 0 215s Done 216s The following NEW packages will be installed: 216s pbsim 216s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 216s Need to get 25.5 kB of archives. 216s After this operation, 84.0 kB of additional disk space will be used. 216s Get:1 http://ftpmaster.internal/ubuntu plucky/universe armhf pbsim armhf 1.0.3+git20180330.e014b1d+dfsg-3 [25.5 kB] 216s Fetched 25.5 kB in 0s (101 kB/s) 216s Selecting previously unselected package pbsim. 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 216s Preparing to unpack .../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_armhf.deb ... 216s Unpacking pbsim (1.0.3+git20180330.e014b1d+dfsg-3) ... 216s Setting up pbsim (1.0.3+git20180330.e014b1d+dfsg-3) ... 216s Processing triggers for man-db (2.13.0-1) ... 225s autopkgtest [15:14:21]: test run: [----------------------- 227s :::: Simulation parameters ::: 227s 227s Simulated by stochastic model. 227s 227s prefix : sd 227s data-type : CLR 227s depth : 20.000000 227s length-mean : 3000.000000 227s length-sd : 2300.000000 227s length-min : 100 227s length-max : 25000 227s accuracy-mean : 0.780000 227s accuracy-sd : 0.020000 227s accuracy-min : 0.750000 227s accuracy-max : 1.000000 227s difference-ratio : 10:60:30 227s 227s !! ref file /tmp/autopkgtest.esUJbC/build.tpD/src/sample/sample.fasta 227s :::: Reference stats :::: 227s 227s file name : /tmp/autopkgtest.esUJbC/build.tpD/src/sample/sample.fasta 227s 227s ref.1 (len:5154862) : sample 227s 241s run: OK 241s :::: Simulation stats (ref.1 - name: sample) :::: 241s 241s read num. : 34405 241s depth : 20.000000 241s read length mean (SD) : 2996.577242 (2266.606631) 241s read length min : 142 241s read length max : 24973 241s read accuracy mean (SD) : 0.781512 (0.018863) 241s substitution rate. : 0.021861 241s insertion rate. : 0.131110 241s deletion rate. : 0.066037 241s 241s :::: System utilization :::: 241s 241s CPU time(s) : 13 241s Elapsed time(s) : 14 241s autopkgtest [15:14:37]: test run: -----------------------] 246s run PASS 246s autopkgtest [15:14:42]: test run: - - - - - - - - - - results - - - - - - - - - - 250s autopkgtest [15:14:46]: @@@@@@@@@@@@@@@@@@@@ summary 250s run PASS