0s autopkgtest [18:42:09]: starting date and time: 2024-11-13 18:42:09+0000 0s autopkgtest [18:42:09]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [18:42:09]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k_7otxib/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade opentsne --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.51 lxd-armhf-10.145.243.51:autopkgtest/ubuntu/plucky/armhf 53s autopkgtest [18:43:02]: testbed dpkg architecture: armhf 55s autopkgtest [18:43:04]: testbed apt version: 2.9.8 55s autopkgtest [18:43:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 64s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 64s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 64s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [971 kB] 64s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 64s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 64s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [106 kB] 64s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [647 kB] 64s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 64s Fetched 1943 kB in 1s (2035 kB/s) 65s Reading package lists... 84s tee: /proc/self/fd/2: Permission denied 105s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 105s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 105s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 105s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 106s Reading package lists... 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Calculating upgrade... 108s The following NEW packages will be installed: 108s python3.13-gdbm 108s The following packages will be upgraded: 108s libgnutls30t64 libjson-glib-1.0-0 libjson-glib-1.0-common libpython3-stdlib 108s libutempter0 python3 python3-gdbm python3-minimal 108s 8 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 108s Need to get 1131 kB of archives. 108s After this operation, 95.2 kB of additional disk space will be used. 108s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 108s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 108s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 108s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 109s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 109s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 109s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 109s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 109s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 109s Fetched 1131 kB in 1s (977 kB/s) 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 110s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 110s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Setting up python3-minimal (3.12.7-1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 110s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 110s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 110s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_armhf.deb ... 110s Unpacking libgnutls30t64:armhf (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 110s Setting up libgnutls30t64:armhf (3.8.8-2ubuntu1) ... 110s Selecting previously unselected package python3.13-gdbm. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 110s Preparing to unpack .../python3.13-gdbm_3.13.0-2_armhf.deb ... 110s Unpacking python3.13-gdbm (3.13.0-2) ... 110s Preparing to unpack .../python3-gdbm_3.12.7-1_armhf.deb ... 110s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 110s Preparing to unpack .../libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 110s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 110s Preparing to unpack .../libjson-glib-1.0-0_1.10.0+ds-3_armhf.deb ... 110s Unpacking libjson-glib-1.0-0:armhf (1.10.0+ds-3) over (1.10.0+ds-2) ... 110s Preparing to unpack .../libutempter0_1.2.1-4_armhf.deb ... 110s Unpacking libutempter0:armhf (1.2.1-4) over (1.2.1-3build1) ... 110s Setting up libutempter0:armhf (1.2.1-4) ... 110s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 110s Setting up python3.13-gdbm (3.13.0-2) ... 110s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 110s Setting up python3 (3.12.7-1) ... 110s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 110s Setting up python3-gdbm:armhf (3.12.7-1) ... 110s Processing triggers for man-db (2.12.1-3) ... 111s Processing triggers for libc-bin (2.40-1ubuntu3) ... 111s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s autopkgtest [18:44:03]: rebooting testbed after setup commands that affected boot 185s autopkgtest [18:45:14]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 214s autopkgtest [18:45:43]: @@@@@@@@@@@@@@@@@@@@ apt-source opentsne 229s Get:1 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu1 (dsc) [2377 B] 229s Get:2 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu1 (tar) [22.1 MB] 229s Get:3 http://ftpmaster.internal/ubuntu plucky/universe opentsne 1.0.2-1ubuntu1 (diff) [5320 B] 229s gpgv: Signature made Mon Sep 30 12:06:08 2024 UTC 229s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 229s gpgv: Can't check signature: No public key 229s dpkg-source: warning: cannot verify inline signature for ./opentsne_1.0.2-1ubuntu1.dsc: no acceptable signature found 229s autopkgtest [18:45:58]: testing package opentsne version 1.0.2-1ubuntu1 231s autopkgtest [18:46:00]: build not needed 235s autopkgtest [18:46:04]: test python: preparing testbed 246s Reading package lists... 246s Building dependency tree... 246s Reading state information... 247s Starting pkgProblemResolver with broken count: 0 247s Starting 2 pkgProblemResolver with broken count: 0 247s Done 248s The following additional packages will be installed: 248s libblas3 libfftw3-double3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 248s libpython3.13-minimal libpython3.13-stdlib python3-all python3-decorator 248s python3-iniconfig python3-joblib python3-numpy python3-opentsne 248s python3-packaging python3-pluggy python3-pytest python3-pytest-runner 248s python3-scipy python3-sklearn python3-sklearn-lib python3-threadpoolctl 248s python3.13 python3.13-minimal 248s Suggested packages: 248s libfftw3-bin libfftw3-dev python-joblib-doc gcc gfortran python-numpy-doc 248s python3-dev python-scipy-doc python3-dap python-sklearn-doc ipython3 248s python3.13-venv python3.13-doc binfmt-support 248s Recommended packages: 248s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 248s python3-matplotlib 248s The following NEW packages will be installed: 248s autopkgtest-satdep libblas3 libfftw3-double3 libgfortran5 libgomp1 248s liblapack3 liblbfgsb0 libpython3.13-minimal libpython3.13-stdlib python3-all 248s python3-decorator python3-iniconfig python3-joblib python3-numpy 248s python3-opentsne python3-packaging python3-pluggy python3-pytest 248s python3-pytest-runner python3-scipy python3-sklearn python3-sklearn-lib 248s python3-threadpoolctl python3.13 python3.13-minimal 248s 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. 248s Need to get 35.4 MB/35.4 MB of archives. 248s After this operation, 128 MB of additional disk space will be used. 248s Get:1 /tmp/autopkgtest.63uZGU/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [728 B] 248s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 248s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 248s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 248s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 248s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libfftw3-double3 armhf 3.3.10-1ubuntu4 [368 kB] 248s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 248s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 249s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 249s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 249s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 249s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 249s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 249s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 249s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-joblib all 1.3.2-5 [206 kB] 249s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 249s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 250s Get:18 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-threadpoolctl all 3.1.0-1 [21.3 kB] 250s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sklearn-lib armhf 1.4.2+dfsg-6 [3751 kB] 250s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sklearn all 1.4.2+dfsg-6 [2257 kB] 250s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-opentsne armhf 1.0.2-1ubuntu1 [349 kB] 250s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 250s Get:23 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 250s Get:24 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB] 250s Get:25 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-runner all 2.11.1-4 [7450 B] 250s Fetched 35.4 MB in 3s (14.1 MB/s) 251s Selecting previously unselected package libpython3.13-minimal:armhf. 251s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 251s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ... 251s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 251s Selecting previously unselected package python3.13-minimal. 251s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ... 251s Unpacking python3.13-minimal (3.13.0-2) ... 251s Selecting previously unselected package libblas3:armhf. 251s Preparing to unpack .../02-libblas3_3.12.0-3build2_armhf.deb ... 251s Unpacking libblas3:armhf (3.12.0-3build2) ... 251s Selecting previously unselected package libgomp1:armhf. 251s Preparing to unpack .../03-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 251s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 251s Selecting previously unselected package libfftw3-double3:armhf. 251s Preparing to unpack .../04-libfftw3-double3_3.3.10-1ubuntu4_armhf.deb ... 251s Unpacking libfftw3-double3:armhf (3.3.10-1ubuntu4) ... 251s Selecting previously unselected package libgfortran5:armhf. 251s Preparing to unpack .../05-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 251s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 251s Selecting previously unselected package liblapack3:armhf. 251s Preparing to unpack .../06-liblapack3_3.12.0-3build2_armhf.deb ... 251s Unpacking liblapack3:armhf (3.12.0-3build2) ... 251s Selecting previously unselected package liblbfgsb0:armhf. 251s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 251s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 251s Selecting previously unselected package libpython3.13-stdlib:armhf. 251s Preparing to unpack .../08-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 251s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 251s Selecting previously unselected package python3.13. 251s Preparing to unpack .../09-python3.13_3.13.0-2_armhf.deb ... 251s Unpacking python3.13 (3.13.0-2) ... 251s Selecting previously unselected package python3-all. 251s Preparing to unpack .../10-python3-all_3.12.7-1_armhf.deb ... 251s Unpacking python3-all (3.12.7-1) ... 251s Selecting previously unselected package python3-decorator. 251s Preparing to unpack .../11-python3-decorator_5.1.1-5_all.deb ... 251s Unpacking python3-decorator (5.1.1-5) ... 251s Selecting previously unselected package python3-iniconfig. 251s Preparing to unpack .../12-python3-iniconfig_1.1.1-2_all.deb ... 251s Unpacking python3-iniconfig (1.1.1-2) ... 251s Selecting previously unselected package python3-joblib. 251s Preparing to unpack .../13-python3-joblib_1.3.2-5_all.deb ... 251s Unpacking python3-joblib (1.3.2-5) ... 251s Selecting previously unselected package python3-numpy. 251s Preparing to unpack .../14-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 251s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 252s Selecting previously unselected package python3-scipy. 252s Preparing to unpack .../15-python3-scipy_1.13.1-5_armhf.deb ... 252s Unpacking python3-scipy (1.13.1-5) ... 252s Selecting previously unselected package python3-threadpoolctl. 252s Preparing to unpack .../16-python3-threadpoolctl_3.1.0-1_all.deb ... 252s Unpacking python3-threadpoolctl (3.1.0-1) ... 252s Selecting previously unselected package python3-sklearn-lib:armhf. 252s Preparing to unpack .../17-python3-sklearn-lib_1.4.2+dfsg-6_armhf.deb ... 252s Unpacking python3-sklearn-lib:armhf (1.4.2+dfsg-6) ... 252s Selecting previously unselected package python3-sklearn. 252s Preparing to unpack .../18-python3-sklearn_1.4.2+dfsg-6_all.deb ... 252s Unpacking python3-sklearn (1.4.2+dfsg-6) ... 252s Selecting previously unselected package python3-opentsne. 252s Preparing to unpack .../19-python3-opentsne_1.0.2-1ubuntu1_armhf.deb ... 252s Unpacking python3-opentsne (1.0.2-1ubuntu1) ... 252s Selecting previously unselected package python3-packaging. 252s Preparing to unpack .../20-python3-packaging_24.1-1_all.deb ... 252s Unpacking python3-packaging (24.1-1) ... 252s Selecting previously unselected package python3-pluggy. 252s Preparing to unpack .../21-python3-pluggy_1.5.0-1_all.deb ... 252s Unpacking python3-pluggy (1.5.0-1) ... 252s Selecting previously unselected package python3-pytest. 252s Preparing to unpack .../22-python3-pytest_8.3.3-1_all.deb ... 252s Unpacking python3-pytest (8.3.3-1) ... 252s Selecting previously unselected package python3-pytest-runner. 252s Preparing to unpack .../23-python3-pytest-runner_2.11.1-4_all.deb ... 252s Unpacking python3-pytest-runner (2.11.1-4) ... 253s Selecting previously unselected package autopkgtest-satdep. 253s Preparing to unpack .../24-1-autopkgtest-satdep.deb ... 253s Unpacking autopkgtest-satdep (0) ... 253s Setting up python3-iniconfig (1.1.1-2) ... 253s Setting up python3-joblib (1.3.2-5) ... 253s Setting up python3-threadpoolctl (3.1.0-1) ... 253s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 253s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 253s Setting up python3-decorator (5.1.1-5) ... 254s Setting up libblas3:armhf (3.12.0-3build2) ... 254s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 254s Setting up python3-packaging (24.1-1) ... 254s Setting up libfftw3-double3:armhf (3.3.10-1ubuntu4) ... 254s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 254s Setting up python3-pluggy (1.5.0-1) ... 254s Setting up python3.13-minimal (3.13.0-2) ... 255s Setting up python3-pytest-runner (2.11.1-4) ... 255s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... 255s Setting up liblapack3:armhf (3.12.0-3build2) ... 255s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 255s Setting up python3.13 (3.13.0-2) ... 256s Setting up python3-pytest (8.3.3-1) ... 257s Setting up python3-all (3.12.7-1) ... 257s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 261s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 261s Setting up python3-scipy (1.13.1-5) ... 268s Setting up python3-sklearn-lib:armhf (1.4.2+dfsg-6) ... 268s Setting up python3-sklearn (1.4.2+dfsg-6) ... 272s Setting up python3-opentsne (1.0.2-1ubuntu1) ... 273s Setting up autopkgtest-satdep (0) ... 273s Processing triggers for systemd (256.5-2ubuntu4) ... 273s Processing triggers for man-db (2.12.1-3) ... 273s Processing triggers for libc-bin (2.40-1ubuntu3) ... 287s (Reading database ... 63902 files and directories currently installed.) 287s Removing autopkgtest-satdep (0) ... 293s autopkgtest [18:47:02]: test python: [----------------------- 295s + cp -rf tests /tmp/autopkgtest.63uZGU/autopkgtest_tmp 295s + py3versions --supported 295s + cd /tmp/autopkgtest.63uZGU/autopkgtest_tmp 295s + echo Testing with python3.13: 295s + python3.13 -m pytest 295s Testing with python3.13: 296s ============================= test session starts ============================== 296s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 296s rootdir: /tmp/autopkgtest.63uZGU/autopkgtest_tmp 296s plugins: typeguard-4.4.1 296s collected 0 items / 7 errors 296s 296s ==================================== ERRORS ==================================== 296s __________________ ERROR collecting tests/test_affinities.py ___________________ 296s ImportError while importing test module '/tmp/autopkgtest.63uZGU/autopkgtest_tmp/tests/test_affinities.py'. 296s Hint: make sure your test modules/packages have valid Python names. 296s Traceback: 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 296s from . import multiarray 296s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 296s from . import overrides 296s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 296s from numpy.core._multiarray_umath import ( 296s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 296s 296s During handling of the above exception, another exception occurred: 296s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 296s from numpy.__config__ import show as show_config 296s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 296s from numpy.core._multiarray_umath import ( 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 296s raise ImportError(msg) 296s E ImportError: 296s E 296s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 296s E 296s E Importing the numpy C-extensions failed. This error can happen for 296s E many reasons, often due to issues with your setup or how NumPy was 296s E installed. 296s E 296s E We have compiled some common reasons and troubleshooting tips at: 296s E 296s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 296s E 296s E Please note and check the following: 296s E 296s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 296s E * The NumPy version is: "1.26.4" 296s E 296s E and make sure that they are the versions you expect. 296s E Please carefully study the documentation linked above for further help. 296s E 296s E Original error was: No module named 'numpy.core._multiarray_umath' 296s 296s The above exception was the direct cause of the following exception: 296s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 296s return _bootstrap._gcd_import(name[level:], package, level) 296s tests/test_affinities.py:5: in 296s import numpy as np 296s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 296s raise ImportError(msg) from e 296s E ImportError: Error importing numpy: you should not try to import numpy from 296s E its source directory; please exit the numpy source tree, and relaunch 296s E your python interpreter from there. 296s __________________ ERROR collecting tests/test_correctness.py __________________ 296s ImportError while importing test module '/tmp/autopkgtest.63uZGU/autopkgtest_tmp/tests/test_correctness.py'. 296s Hint: make sure your test modules/packages have valid Python names. 296s Traceback: 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 296s from . import multiarray 296s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 296s from . import overrides 296s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 296s from numpy.core._multiarray_umath import ( 296s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 296s 296s During handling of the above exception, another exception occurred: 296s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 296s from numpy.__config__ import show as show_config 296s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 296s from numpy.core._multiarray_umath import ( 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 296s raise ImportError(msg) 296s E ImportError: 296s E 296s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 296s E 296s E Importing the numpy C-extensions failed. This error can happen for 296s E many reasons, often due to issues with your setup or how NumPy was 296s E installed. 296s E 296s E We have compiled some common reasons and troubleshooting tips at: 296s E 296s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 296s E 296s E Please note and check the following: 296s E 296s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 296s E * The NumPy version is: "1.26.4" 296s E 296s E and make sure that they are the versions you expect. 296s E Please carefully study the documentation linked above for further help. 296s E 296s E Original error was: No module named 'numpy.core._multiarray_umath' 296s 296s The above exception was the direct cause of the following exception: 296s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 296s return _bootstrap._gcd_import(name[level:], package, level) 296s tests/test_correctness.py:5: in 296s from scipy.spatial.distance import pdist, squareform 296s /usr/lib/python3/dist-packages/scipy/__init__.py:47: in 296s from numpy import __version__ as __numpy_version__ 296s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 296s raise ImportError(msg) from e 296s E ImportError: Error importing numpy: you should not try to import numpy from 296s E its source directory; please exit the numpy source tree, and relaunch 296s E your python interpreter from there. 296s _______________ ERROR collecting tests/test_different_usages.py ________________ 296s ImportError while importing test module '/tmp/autopkgtest.63uZGU/autopkgtest_tmp/tests/test_different_usages.py'. 296s Hint: make sure your test modules/packages have valid Python names. 296s Traceback: 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 296s from . import multiarray 296s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 296s from . import overrides 296s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 296s from numpy.core._multiarray_umath import ( 296s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 296s 296s During handling of the above exception, another exception occurred: 296s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 296s from numpy.__config__ import show as show_config 296s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 296s from numpy.core._multiarray_umath import ( 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 296s raise ImportError(msg) 296s E ImportError: 296s E 296s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 296s E 296s E Importing the numpy C-extensions failed. This error can happen for 296s E many reasons, often due to issues with your setup or how NumPy was 296s E installed. 296s E 296s E We have compiled some common reasons and troubleshooting tips at: 296s E 296s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 296s E 296s E Please note and check the following: 296s E 296s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 296s E * The NumPy version is: "1.26.4" 296s E 296s E and make sure that they are the versions you expect. 296s E Please carefully study the documentation linked above for further help. 296s E 296s E Original error was: No module named 'numpy.core._multiarray_umath' 296s 296s The above exception was the direct cause of the following exception: 296s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 296s return _bootstrap._gcd_import(name[level:], package, level) 296s tests/test_different_usages.py:4: in 296s import numpy as np 296s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 296s raise ImportError(msg) from e 296s E ImportError: Error importing numpy: you should not try to import numpy from 296s E its source directory; please exit the numpy source tree, and relaunch 296s E your python interpreter from there. 296s _______________ ERROR collecting tests/test_nearest_neighbors.py _______________ 296s ImportError while importing test module '/tmp/autopkgtest.63uZGU/autopkgtest_tmp/tests/test_nearest_neighbors.py'. 296s Hint: make sure your test modules/packages have valid Python names. 296s Traceback: 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 296s from . import multiarray 296s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 296s from . import overrides 296s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 296s from numpy.core._multiarray_umath import ( 296s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 296s 296s During handling of the above exception, another exception occurred: 296s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 296s from numpy.__config__ import show as show_config 296s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 296s from numpy.core._multiarray_umath import ( 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 296s raise ImportError(msg) 296s E ImportError: 296s E 296s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 296s E 296s E Importing the numpy C-extensions failed. This error can happen for 296s E many reasons, often due to issues with your setup or how NumPy was 296s E installed. 296s E 296s E We have compiled some common reasons and troubleshooting tips at: 296s E 296s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 296s E 296s E Please note and check the following: 296s E 296s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 296s E * The NumPy version is: "1.26.4" 296s E 296s E and make sure that they are the versions you expect. 296s E Please carefully study the documentation linked above for further help. 296s E 296s E Original error was: No module named 'numpy.core._multiarray_umath' 296s 296s The above exception was the direct cause of the following exception: 296s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 296s return _bootstrap._gcd_import(name[level:], package, level) 296s tests/test_nearest_neighbors.py:8: in 296s import numpy as np 296s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 296s raise ImportError(msg) from e 296s E ImportError: Error importing numpy: you should not try to import numpy from 296s E its source directory; please exit the numpy source tree, and relaunch 296s E your python interpreter from there. 296s ________________ ERROR collecting tests/test_sklearn_wrapper.py ________________ 296s ImportError while importing test module '/tmp/autopkgtest.63uZGU/autopkgtest_tmp/tests/test_sklearn_wrapper.py'. 296s Hint: make sure your test modules/packages have valid Python names. 296s Traceback: 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 296s from . import multiarray 296s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 296s from . import overrides 296s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 296s from numpy.core._multiarray_umath import ( 296s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 296s 296s During handling of the above exception, another exception occurred: 296s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 296s from numpy.__config__ import show as show_config 296s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 296s from numpy.core._multiarray_umath import ( 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 296s raise ImportError(msg) 296s E ImportError: 296s E 296s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 296s E 296s E Importing the numpy C-extensions failed. This error can happen for 296s E many reasons, often due to issues with your setup or how NumPy was 296s E installed. 296s E 296s E We have compiled some common reasons and troubleshooting tips at: 296s E 296s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 296s E 296s E Please note and check the following: 296s E 296s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 296s E * The NumPy version is: "1.26.4" 296s E 296s E and make sure that they are the versions you expect. 296s E Please carefully study the documentation linked above for further help. 296s E 296s E Original error was: No module named 'numpy.core._multiarray_umath' 296s 296s The above exception was the direct cause of the following exception: 296s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 296s return _bootstrap._gcd_import(name[level:], package, level) 296s tests/test_sklearn_wrapper.py:2: in 296s import numpy as np 296s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 296s raise ImportError(msg) from e 296s E ImportError: Error importing numpy: you should not try to import numpy from 296s E its source directory; please exit the numpy source tree, and relaunch 296s E your python interpreter from there. 296s _____________________ ERROR collecting tests/test_tsne.py ______________________ 296s ImportError while importing test module '/tmp/autopkgtest.63uZGU/autopkgtest_tmp/tests/test_tsne.py'. 296s Hint: make sure your test modules/packages have valid Python names. 296s Traceback: 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 296s from . import multiarray 296s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 296s from . import overrides 296s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 296s from numpy.core._multiarray_umath import ( 296s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 296s 296s During handling of the above exception, another exception occurred: 296s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 296s from numpy.__config__ import show as show_config 296s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 296s from numpy.core._multiarray_umath import ( 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 296s raise ImportError(msg) 296s E ImportError: 296s E 296s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 296s E 296s E Importing the numpy C-extensions failed. This error can happen for 296s E many reasons, often due to issues with your setup or how NumPy was 296s E installed. 296s E 296s E We have compiled some common reasons and troubleshooting tips at: 296s E 296s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 296s E 296s E Please note and check the following: 296s E 296s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 296s E * The NumPy version is: "1.26.4" 296s E 296s E and make sure that they are the versions you expect. 296s E Please carefully study the documentation linked above for further help. 296s E 296s E Original error was: No module named 'numpy.core._multiarray_umath' 296s 296s The above exception was the direct cause of the following exception: 296s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 296s return _bootstrap._gcd_import(name[level:], package, level) 296s tests/test_tsne.py:9: in 296s import numpy as np 296s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 296s raise ImportError(msg) from e 296s E ImportError: Error importing numpy: you should not try to import numpy from 296s E its source directory; please exit the numpy source tree, and relaunch 296s E your python interpreter from there. 296s _____________________ ERROR collecting tests/test_utils.py _____________________ 296s ImportError while importing test module '/tmp/autopkgtest.63uZGU/autopkgtest_tmp/tests/test_utils.py'. 296s Hint: make sure your test modules/packages have valid Python names. 296s Traceback: 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 296s from . import multiarray 296s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 296s from . import overrides 296s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 296s from numpy.core._multiarray_umath import ( 296s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 296s 296s During handling of the above exception, another exception occurred: 296s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 296s from numpy.__config__ import show as show_config 296s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 296s from numpy.core._multiarray_umath import ( 296s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 296s raise ImportError(msg) 296s E ImportError: 296s E 296s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 296s E 296s E Importing the numpy C-extensions failed. This error can happen for 296s E many reasons, often due to issues with your setup or how NumPy was 296s E installed. 296s E 296s E We have compiled some common reasons and troubleshooting tips at: 296s E 296s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 296s E 296s E Please note and check the following: 296s E 296s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 296s E * The NumPy version is: "1.26.4" 296s E 296s E and make sure that they are the versions you expect. 296s E Please carefully study the documentation linked above for further help. 296s E 296s E Original error was: No module named 'numpy.core._multiarray_umath' 296s 296s The above exception was the direct cause of the following exception: 296s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 296s return _bootstrap._gcd_import(name[level:], package, level) 296s tests/test_utils.py:2: in 296s import numpy as np 296s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 296s raise ImportError(msg) from e 296s E ImportError: Error importing numpy: you should not try to import numpy from 296s E its source directory; please exit the numpy source tree, and relaunch 296s E your python interpreter from there. 296s =========================== short test summary info ============================ 296s ERROR tests/test_affinities.py 296s ERROR tests/test_correctness.py 296s ERROR tests/test_different_usages.py 296s ERROR tests/test_nearest_neighbors.py 296s ERROR tests/test_sklearn_wrapper.py 296s ERROR tests/test_tsne.py 296s ERROR tests/test_utils.py 296s !!!!!!!!!!!!!!!!!!! Interrupted: 7 errors during collection !!!!!!!!!!!!!!!!!!!! 296s ============================== 7 errors in 0.38s =============================== 296s autopkgtest [18:47:05]: test python: -----------------------] 300s autopkgtest [18:47:09]: test python: - - - - - - - - - - results - - - - - - - - - - 300s python FAIL non-zero exit status 2 304s autopkgtest [18:47:13]: @@@@@@@@@@@@@@@@@@@@ summary 304s python FAIL non-zero exit status 2