0s autopkgtest [14:57:41]: starting date and time: 2025-03-15 14:57:41+0000 0s autopkgtest [14:57:41]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [14:57:41]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2yvsq28u/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade openbabel --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- lxd -r lxd-armhf-10.145.243.79 lxd-armhf-10.145.243.79:autopkgtest/ubuntu/plucky/armhf 20s autopkgtest [14:58:01]: testbed dpkg architecture: armhf 22s autopkgtest [14:58:03]: testbed apt version: 2.9.33 25s autopkgtest [14:58:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 27s autopkgtest [14:58:08]: testbed release detected to be: None 34s autopkgtest [14:58:15]: updating testbed package index (apt update) 36s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 37s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 37s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 37s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 37s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [404 kB] 38s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [101 kB] 38s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 38s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [81.0 kB] 38s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1944 B] 38s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 38s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [326 kB] 39s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [12.1 kB] 39s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3472 B] 39s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [332 B] 39s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 39s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 68s Get:17 http://ftpmaster.internal/ubuntu plucky/main Sources [1400 kB] 69s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 72s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.4 kB] 72s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 72s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.1 MB] 93s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 95s Fetched 41.0 MB in 59s (699 kB/s) 96s Reading package lists... 102s autopkgtest [14:59:23]: upgrading testbed (apt dist-upgrade and autopurge) 103s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 104s Starting 2 pkgProblemResolver with broken count: 0 104s Done 105s Entering ResolveByKeep 105s 106s Calculating upgrade... 106s The following packages will be upgraded: 106s libc-bin libc6 locales python3-jinja2 sos strace 107s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 8642 kB of archives. 107s After this operation, 23.6 kB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc6 armhf 2.41-1ubuntu2 [2932 kB] 111s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libc-bin armhf 2.41-1ubuntu2 [545 kB] 111s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf locales all 2.41-1ubuntu2 [4246 kB] 117s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 118s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 118s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 119s Preconfiguring packages ... 119s Fetched 8642 kB in 12s (710 kB/s) 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 119s Preparing to unpack .../libc6_2.41-1ubuntu2_armhf.deb ... 119s Unpacking libc6:armhf (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 120s Setting up libc6:armhf (2.41-1ubuntu2) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 120s Preparing to unpack .../libc-bin_2.41-1ubuntu2_armhf.deb ... 120s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 120s Setting up libc-bin (2.41-1ubuntu2) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 120s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 120s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 120s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 120s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 121s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 121s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 121s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 121s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 121s Setting up sos (4.9.0-5) ... 122s Setting up locales (2.41-1ubuntu2) ... 122s Generating locales (this might take a while)... 124s en_US.UTF-8... done 124s Generation complete. 124s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 124s Setting up strace (6.13+ds-1ubuntu1) ... 124s Processing triggers for man-db (2.13.0-1) ... 126s Processing triggers for systemd (257.3-1ubuntu3) ... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 129s Solving dependencies... 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s autopkgtest [14:59:53]: rebooting testbed after setup commands that affected boot 174s autopkgtest [15:00:35]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 199s autopkgtest [15:01:00]: @@@@@@@@@@@@@@@@@@@@ apt-source openbabel 258s Get:1 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu3 (dsc) [2896 B] 258s Get:2 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu3 (tar) [21.8 MB] 258s Get:3 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu3 (diff) [22.1 kB] 259s gpgv: Signature made Fri Jan 3 13:45:31 2025 UTC 259s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 259s gpgv: Can't check signature: No public key 259s dpkg-source: warning: cannot verify inline signature for ./openbabel_3.1.1+dfsg-11ubuntu3.dsc: no acceptable signature found 262s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/src/CMakeLists.txt more than once 262s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/CMakeLists.txt more than once 262s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/OpenBabel3Config.cmake.in more than once 262s autopkgtest [15:02:03]: testing package openbabel version 3.1.1+dfsg-11ubuntu3 265s autopkgtest [15:02:06]: build not needed 273s autopkgtest [15:02:14]: test python3: preparing testbed 275s Reading package lists... 275s Building dependency tree... 275s Reading state information... 275s Starting pkgProblemResolver with broken count: 0 275s Starting 2 pkgProblemResolver with broken count: 0 275s Done 276s The following NEW packages will be installed: 276s adwaita-icon-theme at-spi2-common dconf-gsettings-backend dconf-service 276s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 276s gtk-update-icon-cache hicolor-icon-theme libatk-bridge2.0-0t64 276s libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 libavahi-common-data 276s libavahi-common3 libboost-iostreams1.83.0 libcairo-gobject2 libcairo2 276s libchemistry-openbabel-perl libcolord2 libcups2t64 libdatrie1 libdconf1 276s libdeflate0 libepoxy0 libfontconfig1 libfreetype6 libgdk-pixbuf-2.0-0 276s libgdk-pixbuf2.0-common libgomp1 libgraphite2-3 libgtk-3-0t64 276s libgtk-3-common libharfbuzz0b libice6 libinchi1.07 libjbig0 libjpeg-turbo8 276s libjpeg8 libjs-jquery liblcms2-2 liblerc4 libmaeparser1 libnotify4 276s libopenbabel-dev libopenbabel-doc libopenbabel7 libpango-1.0-0 276s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-32-0 libpixman-1-0 276s libpython3.13 libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 276s libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 276s libwxbase3.2-1t64 libwxgtk3.2-1t64 libxcb-render0 libxcb-shm0 libxcomposite1 276s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 276s libxrender1 libxtst6 openbabel openbabel-gui python3-openbabel x11-common 276s 0 upgraded, 80 newly installed, 0 to remove and 0 not upgraded. 276s Need to get 30.3 MB of archives. 276s After this operation, 120 MB of additional disk space will be used. 276s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B] 277s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 277s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 277s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 277s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 277s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 277s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 277s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 278s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 278s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.12+dfsg-2 [136 kB] 278s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf gtk-update-icon-cache armhf 4.17.5+ds-3ubuntu1 [51.8 kB] 278s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf hicolor-icon-theme all 0.18-2 [13.3 kB] 278s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf adwaita-icon-theme all 48.0-1 [578 kB] 279s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf at-spi2-common all 2.55.90-1 [9072 B] 279s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libdconf1 armhf 0.40.0-5 [38.4 kB] 279s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf dconf-service armhf 0.40.0-5 [27.6 kB] 279s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf dconf-gsettings-backend armhf 0.40.0-5 [23.8 kB] 279s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 280s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 281s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 283s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-2ubuntu1 [37.5 kB] 283s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-2ubuntu1 [114 kB] 283s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-2ubuntu1 [190 kB] 283s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libatk1.0-0t64 armhf 2.55.90-1 [48.2 kB] 283s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libxi6 armhf 2:1.8.2-1 [26.5 kB] 283s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libatspi2.0-0t64 armhf 2.55.90-1 [74.7 kB] 283s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libatk-bridge2.0-0t64 armhf 2.55.90-1 [59.7 kB] 284s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common-data armhf 0.8-16ubuntu1 [30.9 kB] 284s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common3 armhf 0.8-16ubuntu1 [20.2 kB] 284s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-client3 armhf 0.8-16ubuntu1 [24.1 kB] 284s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libboost-iostreams1.83.0 armhf 1.83.0-4.1ubuntu2 [258 kB] 284s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 284s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 285s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 285s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 285s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 285s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo-gobject2 armhf 1.18.2-2 [126 kB] 286s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 286s Get:39 http://ftpmaster.internal/ubuntu plucky/universe armhf libinchi1.07 armhf 1.07.3+dfsg-1 [491 kB] 287s Get:40 http://ftpmaster.internal/ubuntu plucky/universe armhf libmaeparser1 armhf 1.3.1-1build1 [89.3 kB] 287s Get:41 http://ftpmaster.internal/ubuntu plucky/universe armhf libopenbabel7 armhf 3.1.1+dfsg-11ubuntu3 [3241 kB] 293s Get:42 http://ftpmaster.internal/ubuntu plucky/universe armhf libchemistry-openbabel-perl armhf 3.1.1+dfsg-11ubuntu3 [757 kB] 294s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 294s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libcolord2 armhf 1.4.7-3 [132 kB] 294s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libcups2t64 armhf 2.4.11-0ubuntu2 [243 kB] 295s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB] 295s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libepoxy0 armhf 1.5.10-2 [192 kB] 295s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 295s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.2.0-1 [464 kB] 296s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libthai-data all 0.1.29-2build1 [158 kB] 296s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB] 296s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libpango-1.0-0 armhf 1.56.2-1 [216 kB] 297s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libpangoft2-1.0-0 armhf 1.56.2-1 [43.6 kB] 297s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libpangocairo-1.0-0 armhf 1.56.2-1 [25.1 kB] 297s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-client0 armhf 1.23.1-3 [23.3 kB] 297s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-cursor0 armhf 1.23.1-3 [9648 B] 297s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-egl1 armhf 1.23.1-3 [5874 B] 297s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libxcomposite1 armhf 1:0.4.6-1 [6060 B] 297s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libxfixes3 armhf 1:6.0.0-2build1 [9038 B] 297s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libxcursor1 armhf 1:1.2.3-1 [18.0 kB] 297s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libxdamage1 armhf 1:1.1.6-1build1 [5462 B] 297s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libxinerama1 armhf 2:1.1.4-3build1 [5866 B] 297s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libxrandr2 armhf 2:1.5.4-1 [15.8 kB] 297s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libgtk-3-common all 3.24.48-3ubuntu1 [1424 kB] 298s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libgtk-3-0t64 armhf 3.24.48-3ubuntu1 [2621 kB] 302s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 302s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 302s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 302s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf libnotify4 armhf 0.8.4-1 [24.2 kB] 302s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf libopenbabel-dev armhf 3.1.1+dfsg-11ubuntu3 [181 kB] 302s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf libopenbabel-doc all 3.1.1+dfsg-11ubuntu3 [5611 kB] 309s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-32-0 armhf 10.45-1 [197 kB] 310s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13 armhf 3.13.2-2 [2079 kB] 313s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB] 313s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf libwxbase3.2-1t64 armhf 3.2.6+dfsg-2ubuntu1 [1011 kB] 314s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libxtst6 armhf 2:1.2.5-1 [11.0 kB] 314s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf libwxgtk3.2-1t64 armhf 3.2.6+dfsg-2ubuntu1 [4445 kB] 319s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf openbabel armhf 3.1.1+dfsg-11ubuntu3 [130 kB] 320s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf openbabel-gui armhf 3.1.1+dfsg-11ubuntu3 [84.5 kB] 320s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-openbabel armhf 3.1.1+dfsg-11ubuntu3 [588 kB] 321s Fetched 30.3 MB in 44s (686 kB/s) 321s Selecting previously unselected package libgdk-pixbuf2.0-common. 321s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 321s Preparing to unpack .../00-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 321s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 321s Selecting previously unselected package libjpeg-turbo8:armhf. 321s Preparing to unpack .../01-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 321s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 321s Selecting previously unselected package libjpeg8:armhf. 321s Preparing to unpack .../02-libjpeg8_8c-2ubuntu11_armhf.deb ... 321s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 321s Selecting previously unselected package libdeflate0:armhf. 321s Preparing to unpack .../03-libdeflate0_1.23-1_armhf.deb ... 321s Unpacking libdeflate0:armhf (1.23-1) ... 321s Selecting previously unselected package libjbig0:armhf. 321s Preparing to unpack .../04-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 321s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 321s Selecting previously unselected package liblerc4:armhf. 321s Preparing to unpack .../05-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 321s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 321s Selecting previously unselected package libsharpyuv0:armhf. 321s Preparing to unpack .../06-libsharpyuv0_1.5.0-0.1_armhf.deb ... 321s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 321s Selecting previously unselected package libwebp7:armhf. 321s Preparing to unpack .../07-libwebp7_1.5.0-0.1_armhf.deb ... 321s Unpacking libwebp7:armhf (1.5.0-0.1) ... 321s Selecting previously unselected package libtiff6:armhf. 321s Preparing to unpack .../08-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 321s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 321s Selecting previously unselected package libgdk-pixbuf-2.0-0:armhf. 321s Preparing to unpack .../09-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_armhf.deb ... 321s Unpacking libgdk-pixbuf-2.0-0:armhf (2.42.12+dfsg-2) ... 321s Selecting previously unselected package gtk-update-icon-cache. 321s Preparing to unpack .../10-gtk-update-icon-cache_4.17.5+ds-3ubuntu1_armhf.deb ... 321s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 321s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 321s Unpacking gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 321s Selecting previously unselected package hicolor-icon-theme. 321s Preparing to unpack .../11-hicolor-icon-theme_0.18-2_all.deb ... 321s Unpacking hicolor-icon-theme (0.18-2) ... 322s Selecting previously unselected package adwaita-icon-theme. 322s Preparing to unpack .../12-adwaita-icon-theme_48.0-1_all.deb ... 322s Unpacking adwaita-icon-theme (48.0-1) ... 322s Selecting previously unselected package at-spi2-common. 322s Preparing to unpack .../13-at-spi2-common_2.55.90-1_all.deb ... 322s Unpacking at-spi2-common (2.55.90-1) ... 322s Selecting previously unselected package libdconf1:armhf. 322s Preparing to unpack .../14-libdconf1_0.40.0-5_armhf.deb ... 322s Unpacking libdconf1:armhf (0.40.0-5) ... 322s Selecting previously unselected package dconf-service. 322s Preparing to unpack .../15-dconf-service_0.40.0-5_armhf.deb ... 322s Unpacking dconf-service (0.40.0-5) ... 322s Selecting previously unselected package dconf-gsettings-backend:armhf. 322s Preparing to unpack .../16-dconf-gsettings-backend_0.40.0-5_armhf.deb ... 322s Unpacking dconf-gsettings-backend:armhf (0.40.0-5) ... 322s Selecting previously unselected package libfreetype6:armhf. 322s Preparing to unpack .../17-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 322s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 322s Selecting previously unselected package fonts-dejavu-mono. 322s Preparing to unpack .../18-fonts-dejavu-mono_2.37-8_all.deb ... 322s Unpacking fonts-dejavu-mono (2.37-8) ... 322s Selecting previously unselected package fonts-dejavu-core. 322s Preparing to unpack .../19-fonts-dejavu-core_2.37-8_all.deb ... 322s Unpacking fonts-dejavu-core (2.37-8) ... 322s Selecting previously unselected package fontconfig-config. 322s Preparing to unpack .../20-fontconfig-config_2.15.0-2ubuntu1_armhf.deb ... 322s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 322s Selecting previously unselected package libfontconfig1:armhf. 322s Preparing to unpack .../21-libfontconfig1_2.15.0-2ubuntu1_armhf.deb ... 322s Unpacking libfontconfig1:armhf (2.15.0-2ubuntu1) ... 322s Selecting previously unselected package fontconfig. 322s Preparing to unpack .../22-fontconfig_2.15.0-2ubuntu1_armhf.deb ... 322s Unpacking fontconfig (2.15.0-2ubuntu1) ... 322s Selecting previously unselected package libatk1.0-0t64:armhf. 322s Preparing to unpack .../23-libatk1.0-0t64_2.55.90-1_armhf.deb ... 322s Unpacking libatk1.0-0t64:armhf (2.55.90-1) ... 322s Selecting previously unselected package libxi6:armhf. 322s Preparing to unpack .../24-libxi6_2%3a1.8.2-1_armhf.deb ... 322s Unpacking libxi6:armhf (2:1.8.2-1) ... 322s Selecting previously unselected package libatspi2.0-0t64:armhf. 322s Preparing to unpack .../25-libatspi2.0-0t64_2.55.90-1_armhf.deb ... 322s Unpacking libatspi2.0-0t64:armhf (2.55.90-1) ... 322s Selecting previously unselected package libatk-bridge2.0-0t64:armhf. 322s Preparing to unpack .../26-libatk-bridge2.0-0t64_2.55.90-1_armhf.deb ... 322s Unpacking libatk-bridge2.0-0t64:armhf (2.55.90-1) ... 322s Selecting previously unselected package libavahi-common-data:armhf. 322s Preparing to unpack .../27-libavahi-common-data_0.8-16ubuntu1_armhf.deb ... 322s Unpacking libavahi-common-data:armhf (0.8-16ubuntu1) ... 322s Selecting previously unselected package libavahi-common3:armhf. 323s Preparing to unpack .../28-libavahi-common3_0.8-16ubuntu1_armhf.deb ... 323s Unpacking libavahi-common3:armhf (0.8-16ubuntu1) ... 323s Selecting previously unselected package libavahi-client3:armhf. 323s Preparing to unpack .../29-libavahi-client3_0.8-16ubuntu1_armhf.deb ... 323s Unpacking libavahi-client3:armhf (0.8-16ubuntu1) ... 323s Selecting previously unselected package libboost-iostreams1.83.0:armhf. 323s Preparing to unpack .../30-libboost-iostreams1.83.0_1.83.0-4.1ubuntu2_armhf.deb ... 323s Unpacking libboost-iostreams1.83.0:armhf (1.83.0-4.1ubuntu2) ... 323s Selecting previously unselected package libpixman-1-0:armhf. 323s Preparing to unpack .../31-libpixman-1-0_0.44.0-3_armhf.deb ... 323s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 323s Selecting previously unselected package libxcb-render0:armhf. 323s Preparing to unpack .../32-libxcb-render0_1.17.0-2_armhf.deb ... 323s Unpacking libxcb-render0:armhf (1.17.0-2) ... 323s Selecting previously unselected package libxcb-shm0:armhf. 323s Preparing to unpack .../33-libxcb-shm0_1.17.0-2_armhf.deb ... 323s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 323s Selecting previously unselected package libxrender1:armhf. 323s Preparing to unpack .../34-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 323s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 323s Selecting previously unselected package libcairo2:armhf. 323s Preparing to unpack .../35-libcairo2_1.18.2-2_armhf.deb ... 323s Unpacking libcairo2:armhf (1.18.2-2) ... 323s Selecting previously unselected package libcairo-gobject2:armhf. 323s Preparing to unpack .../36-libcairo-gobject2_1.18.2-2_armhf.deb ... 323s Unpacking libcairo-gobject2:armhf (1.18.2-2) ... 323s Selecting previously unselected package libgomp1:armhf. 323s Preparing to unpack .../37-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 323s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 323s Selecting previously unselected package libinchi1.07. 323s Preparing to unpack .../38-libinchi1.07_1.07.3+dfsg-1_armhf.deb ... 323s Unpacking libinchi1.07 (1.07.3+dfsg-1) ... 323s Selecting previously unselected package libmaeparser1:armhf. 323s Preparing to unpack .../39-libmaeparser1_1.3.1-1build1_armhf.deb ... 323s Unpacking libmaeparser1:armhf (1.3.1-1build1) ... 323s Selecting previously unselected package libopenbabel7. 323s Preparing to unpack .../40-libopenbabel7_3.1.1+dfsg-11ubuntu3_armhf.deb ... 323s Unpacking libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 323s Selecting previously unselected package libchemistry-openbabel-perl. 323s Preparing to unpack .../41-libchemistry-openbabel-perl_3.1.1+dfsg-11ubuntu3_armhf.deb ... 323s Unpacking libchemistry-openbabel-perl (3.1.1+dfsg-11ubuntu3) ... 323s Selecting previously unselected package liblcms2-2:armhf. 323s Preparing to unpack .../42-liblcms2-2_2.16-2_armhf.deb ... 323s Unpacking liblcms2-2:armhf (2.16-2) ... 323s Selecting previously unselected package libcolord2:armhf. 323s Preparing to unpack .../43-libcolord2_1.4.7-3_armhf.deb ... 323s Unpacking libcolord2:armhf (1.4.7-3) ... 323s Selecting previously unselected package libcups2t64:armhf. 323s Preparing to unpack .../44-libcups2t64_2.4.11-0ubuntu2_armhf.deb ... 323s Unpacking libcups2t64:armhf (2.4.11-0ubuntu2) ... 323s Selecting previously unselected package libdatrie1:armhf. 323s Preparing to unpack .../45-libdatrie1_0.2.13-3build1_armhf.deb ... 323s Unpacking libdatrie1:armhf (0.2.13-3build1) ... 323s Selecting previously unselected package libepoxy0:armhf. 323s Preparing to unpack .../46-libepoxy0_1.5.10-2_armhf.deb ... 323s Unpacking libepoxy0:armhf (1.5.10-2) ... 323s Selecting previously unselected package libgraphite2-3:armhf. 323s Preparing to unpack .../47-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 323s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 323s Selecting previously unselected package libharfbuzz0b:armhf. 323s Preparing to unpack .../48-libharfbuzz0b_10.2.0-1_armhf.deb ... 323s Unpacking libharfbuzz0b:armhf (10.2.0-1) ... 323s Selecting previously unselected package libthai-data. 323s Preparing to unpack .../49-libthai-data_0.1.29-2build1_all.deb ... 323s Unpacking libthai-data (0.1.29-2build1) ... 323s Selecting previously unselected package libthai0:armhf. 323s Preparing to unpack .../50-libthai0_0.1.29-2build1_armhf.deb ... 323s Unpacking libthai0:armhf (0.1.29-2build1) ... 323s Selecting previously unselected package libpango-1.0-0:armhf. 323s Preparing to unpack .../51-libpango-1.0-0_1.56.2-1_armhf.deb ... 323s Unpacking libpango-1.0-0:armhf (1.56.2-1) ... 323s Selecting previously unselected package libpangoft2-1.0-0:armhf. 323s Preparing to unpack .../52-libpangoft2-1.0-0_1.56.2-1_armhf.deb ... 323s Unpacking libpangoft2-1.0-0:armhf (1.56.2-1) ... 324s Selecting previously unselected package libpangocairo-1.0-0:armhf. 324s Preparing to unpack .../53-libpangocairo-1.0-0_1.56.2-1_armhf.deb ... 324s Unpacking libpangocairo-1.0-0:armhf (1.56.2-1) ... 324s Selecting previously unselected package libwayland-client0:armhf. 324s Preparing to unpack .../54-libwayland-client0_1.23.1-3_armhf.deb ... 324s Unpacking libwayland-client0:armhf (1.23.1-3) ... 324s Selecting previously unselected package libwayland-cursor0:armhf. 324s Preparing to unpack .../55-libwayland-cursor0_1.23.1-3_armhf.deb ... 324s Unpacking libwayland-cursor0:armhf (1.23.1-3) ... 324s Selecting previously unselected package libwayland-egl1:armhf. 324s Preparing to unpack .../56-libwayland-egl1_1.23.1-3_armhf.deb ... 324s Unpacking libwayland-egl1:armhf (1.23.1-3) ... 324s Selecting previously unselected package libxcomposite1:armhf. 324s Preparing to unpack .../57-libxcomposite1_1%3a0.4.6-1_armhf.deb ... 324s Unpacking libxcomposite1:armhf (1:0.4.6-1) ... 324s Selecting previously unselected package libxfixes3:armhf. 324s Preparing to unpack .../58-libxfixes3_1%3a6.0.0-2build1_armhf.deb ... 324s Unpacking libxfixes3:armhf (1:6.0.0-2build1) ... 324s Selecting previously unselected package libxcursor1:armhf. 324s Preparing to unpack .../59-libxcursor1_1%3a1.2.3-1_armhf.deb ... 324s Unpacking libxcursor1:armhf (1:1.2.3-1) ... 324s Selecting previously unselected package libxdamage1:armhf. 324s Preparing to unpack .../60-libxdamage1_1%3a1.1.6-1build1_armhf.deb ... 324s Unpacking libxdamage1:armhf (1:1.1.6-1build1) ... 324s Selecting previously unselected package libxinerama1:armhf. 324s Preparing to unpack .../61-libxinerama1_2%3a1.1.4-3build1_armhf.deb ... 324s Unpacking libxinerama1:armhf (2:1.1.4-3build1) ... 324s Selecting previously unselected package libxrandr2:armhf. 324s Preparing to unpack .../62-libxrandr2_2%3a1.5.4-1_armhf.deb ... 324s Unpacking libxrandr2:armhf (2:1.5.4-1) ... 324s Selecting previously unselected package libgtk-3-common. 324s Preparing to unpack .../63-libgtk-3-common_3.24.48-3ubuntu1_all.deb ... 324s Unpacking libgtk-3-common (3.24.48-3ubuntu1) ... 324s Selecting previously unselected package libgtk-3-0t64:armhf. 324s Preparing to unpack .../64-libgtk-3-0t64_3.24.48-3ubuntu1_armhf.deb ... 324s Unpacking libgtk-3-0t64:armhf (3.24.48-3ubuntu1) ... 324s Selecting previously unselected package x11-common. 324s Preparing to unpack .../65-x11-common_1%3a7.7+23ubuntu3_all.deb ... 324s Unpacking x11-common (1:7.7+23ubuntu3) ... 324s Selecting previously unselected package libice6:armhf. 324s Preparing to unpack .../66-libice6_2%3a1.1.1-1_armhf.deb ... 324s Unpacking libice6:armhf (2:1.1.1-1) ... 324s Selecting previously unselected package libjs-jquery. 324s Preparing to unpack .../67-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 324s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 324s Selecting previously unselected package libnotify4:armhf. 324s Preparing to unpack .../68-libnotify4_0.8.4-1_armhf.deb ... 324s Unpacking libnotify4:armhf (0.8.4-1) ... 324s Selecting previously unselected package libopenbabel-dev. 324s Preparing to unpack .../69-libopenbabel-dev_3.1.1+dfsg-11ubuntu3_armhf.deb ... 324s Unpacking libopenbabel-dev (3.1.1+dfsg-11ubuntu3) ... 324s Selecting previously unselected package libopenbabel-doc. 324s Preparing to unpack .../70-libopenbabel-doc_3.1.1+dfsg-11ubuntu3_all.deb ... 324s Unpacking libopenbabel-doc (3.1.1+dfsg-11ubuntu3) ... 325s Selecting previously unselected package libpcre2-32-0:armhf. 325s Preparing to unpack .../71-libpcre2-32-0_10.45-1_armhf.deb ... 325s Unpacking libpcre2-32-0:armhf (10.45-1) ... 325s Selecting previously unselected package libpython3.13:armhf. 325s Preparing to unpack .../72-libpython3.13_3.13.2-2_armhf.deb ... 325s Unpacking libpython3.13:armhf (3.13.2-2) ... 325s Selecting previously unselected package libsm6:armhf. 325s Preparing to unpack .../73-libsm6_2%3a1.2.4-1_armhf.deb ... 325s Unpacking libsm6:armhf (2:1.2.4-1) ... 325s Selecting previously unselected package libwxbase3.2-1t64:armhf. 325s Preparing to unpack .../74-libwxbase3.2-1t64_3.2.6+dfsg-2ubuntu1_armhf.deb ... 325s Unpacking libwxbase3.2-1t64:armhf (3.2.6+dfsg-2ubuntu1) ... 325s Selecting previously unselected package libxtst6:armhf. 325s Preparing to unpack .../75-libxtst6_2%3a1.2.5-1_armhf.deb ... 325s Unpacking libxtst6:armhf (2:1.2.5-1) ... 325s Selecting previously unselected package libwxgtk3.2-1t64:armhf. 325s Preparing to unpack .../76-libwxgtk3.2-1t64_3.2.6+dfsg-2ubuntu1_armhf.deb ... 325s Unpacking libwxgtk3.2-1t64:armhf (3.2.6+dfsg-2ubuntu1) ... 325s Selecting previously unselected package openbabel. 325s Preparing to unpack .../77-openbabel_3.1.1+dfsg-11ubuntu3_armhf.deb ... 325s Unpacking openbabel (3.1.1+dfsg-11ubuntu3) ... 325s Selecting previously unselected package openbabel-gui. 325s Preparing to unpack .../78-openbabel-gui_3.1.1+dfsg-11ubuntu3_armhf.deb ... 325s Unpacking openbabel-gui (3.1.1+dfsg-11ubuntu3) ... 325s Selecting previously unselected package python3-openbabel. 325s Preparing to unpack .../79-python3-openbabel_3.1.1+dfsg-11ubuntu3_armhf.deb ... 325s Unpacking python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 325s Setting up libpython3.13:armhf (3.13.2-2) ... 325s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 325s Setting up liblcms2-2:armhf (2.16-2) ... 325s Setting up libpixman-1-0:armhf (0.44.0-3) ... 325s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 325s Setting up libxdamage1:armhf (1:1.1.6-1build1) ... 325s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 325s Setting up hicolor-icon-theme (0.18-2) ... 325s Setting up libxi6:armhf (2:1.8.2-1) ... 325s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 325s Setting up libdatrie1:armhf (0.2.13-3build1) ... 325s Setting up libxcb-render0:armhf (1.17.0-2) ... 325s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 325s Setting up x11-common (1:7.7+23ubuntu3) ... 325s Setting up libdeflate0:armhf (1.23-1) ... 325s Setting up libxcb-shm0:armhf (1.17.0-2) ... 325s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 325s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 325s Setting up libcolord2:armhf (1.4.7-3) ... 325s Setting up libdconf1:armhf (0.40.0-5) ... 325s Setting up libpcre2-32-0:armhf (10.45-1) ... 325s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 325s Setting up libepoxy0:armhf (1.5.10-2) ... 325s Setting up libxfixes3:armhf (1:6.0.0-2build1) ... 325s Setting up libboost-iostreams1.83.0:armhf (1.83.0-4.1ubuntu2) ... 325s Setting up libavahi-common-data:armhf (0.8-16ubuntu1) ... 325s Setting up libatspi2.0-0t64:armhf (2.55.90-1) ... 326s Setting up libxinerama1:armhf (2:1.1.4-3build1) ... 326s Setting up fonts-dejavu-mono (2.37-8) ... 326s Setting up libxrandr2:armhf (2:1.5.4-1) ... 326s Setting up fonts-dejavu-core (2.37-8) ... 326s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 326s Setting up libwebp7:armhf (1.5.0-0.1) ... 326s Setting up at-spi2-common (2.55.90-1) ... 326s Setting up libharfbuzz0b:armhf (10.2.0-1) ... 326s Setting up libthai-data (0.1.29-2build1) ... 326s Setting up libwayland-egl1:armhf (1.23.1-3) ... 326s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 326s Setting up libwxbase3.2-1t64:armhf (3.2.6+dfsg-2ubuntu1) ... 326s Setting up libinchi1.07 (1.07.3+dfsg-1) ... 326s Setting up libxcomposite1:armhf (1:0.4.6-1) ... 326s Setting up libwayland-client0:armhf (1.23.1-3) ... 326s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 326s Setting up libice6:armhf (2:1.1.1-1) ... 326s Setting up libatk1.0-0t64:armhf (2.55.90-1) ... 326s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 326s Setting up libxtst6:armhf (2:1.2.5-1) ... 326s Setting up libxcursor1:armhf (1:1.2.3-1) ... 326s Setting up libavahi-common3:armhf (0.8-16ubuntu1) ... 326s Setting up dconf-service (0.40.0-5) ... 326s Setting up libopenbabel-doc (3.1.1+dfsg-11ubuntu3) ... 326s Setting up libmaeparser1:armhf (1.3.1-1build1) ... 326s Setting up libthai0:armhf (0.1.29-2build1) ... 326s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 326s Setting up libwayland-cursor0:armhf (1.23.1-3) ... 326s Setting up libgdk-pixbuf-2.0-0:armhf (2.42.12+dfsg-2) ... 326s Setting up libfontconfig1:armhf (2.15.0-2ubuntu1) ... 326s Setting up libsm6:armhf (2:1.2.4-1) ... 326s Setting up libavahi-client3:armhf (0.8-16ubuntu1) ... 326s Setting up libatk-bridge2.0-0t64:armhf (2.55.90-1) ... 326s Setting up gtk-update-icon-cache (4.17.5+ds-3ubuntu1) ... 326s Setting up fontconfig (2.15.0-2ubuntu1) ... 328s Regenerating fonts cache... done. 328s Setting up dconf-gsettings-backend:armhf (0.40.0-5) ... 328s Setting up libpango-1.0-0:armhf (1.56.2-1) ... 328s Setting up libcairo2:armhf (1.18.2-2) ... 328s Setting up adwaita-icon-theme (48.0-1) ... 328s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 328s Setting up libnotify4:armhf (0.8.4-1) ... 328s Setting up libcairo-gobject2:armhf (1.18.2-2) ... 328s Setting up libpangoft2-1.0-0:armhf (1.56.2-1) ... 328s Setting up libcups2t64:armhf (2.4.11-0ubuntu2) ... 328s Setting up libgtk-3-common (3.24.48-3ubuntu1) ... 328s Setting up libpangocairo-1.0-0:armhf (1.56.2-1) ... 328s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 328s Setting up libopenbabel-dev (3.1.1+dfsg-11ubuntu3) ... 328s Setting up libchemistry-openbabel-perl (3.1.1+dfsg-11ubuntu3) ... 328s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 328s Setting up openbabel (3.1.1+dfsg-11ubuntu3) ... 328s Processing triggers for libc-bin (2.41-1ubuntu2) ... 328s Processing triggers for man-db (2.13.0-1) ... 329s Processing triggers for libglib2.0-0t64:armhf (2.84.0-1) ... 329s Setting up libgtk-3-0t64:armhf (3.24.48-3ubuntu1) ... 329s Setting up libwxgtk3.2-1t64:armhf (3.2.6+dfsg-2ubuntu1) ... 329s Setting up openbabel-gui (3.1.1+dfsg-11ubuntu3) ... 329s Processing triggers for libc-bin (2.41-1ubuntu2) ... 350s autopkgtest [15:03:31]: test python3: [----------------------- 352s Running test/testRInChI.py ... 352s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testRInChI.py:7: SyntaxWarning: invalid escape sequence '\P' 352s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 352s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testbabel.py:7: SyntaxWarning: invalid escape sequence '\P' 352s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 352s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d' 352s pat = "(-?\d.*) molecule(?:s?) converted" 353s .. 353s ---------------------------------------------------------------------- 353s Ran 2 tests in 1.266s 353s 353s OK 353s Running test/test_pybel.py ... 353s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/test_pybel.py:5: SyntaxWarning: invalid escape sequence '\P' 353s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 353s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testbindings.py:5: SyntaxWarning: invalid escape sequence '\P' 353s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 370s .........................============================== 370s *** Open Babel Warning in WriteMolecule 370s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 370s .....============================== 370s *** Open Babel Error in SMARTSError 370s SMARTS Error: 370s [#NOEL][#NOEL] 370s ^ 370s 370s .... 370s ---------------------------------------------------------------------- 370s Ran 34 tests in 17.213s 370s 370s OK 370s Running test/testbabel.py ... 370s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testbabel.py:7: SyntaxWarning: invalid escape sequence '\P' 370s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 370s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d' 370s pat = "(-?\d.*) molecule(?:s?) converted" 372s ......./usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 372s self.stdin = io.open(p2cwrite, 'wb', bufsize) 372s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 372s self.stdout = io.open(c2pread, 'rb', bufsize) 372s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 372s self.stderr = io.open(errread, 'rb', bufsize) 374s ...... 374s ---------------------------------------------------------------------- 374s Ran 13 tests in 3.261s 374s 374s OK 374s Running test/testbindings.py ... 374s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testbindings.py:5: SyntaxWarning: invalid escape sequence '\P' 374s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 374s ...============================== 374s *** Open Babel Warning in WriteMolecule 374s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 374s ....============================== 374s *** Open Babel Warning in ParseSmiles 374s Too many greater-than signs in SMILES string 374s 374s ============================== 374s *** Open Babel Warning in ParseSmiles 374s Too many greater-than signs in SMILES string 374s 374s ============================== 374s *** Open Babel Warning in ParseSmiles 374s Too many greater-than signs in SMILES string 374s 374s ============================== 374s *** Open Babel Warning in ParseSmiles 374s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 374s ============================== 374s *** Open Babel Warning in ParseSmiles 374s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 374s ============================== 374s *** Open Babel Warning in ParseSmiles 374s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 374s ..============================== 374s *** Open Babel Warning in IsValid 374s The molecule is not marked as a reaction. Use SetIsReaction(). 374s ============================== 374s *** Open Babel Warning in IsValid 374s Reaction roles should be in the range 0 to 3 inclusive. 374s ============================== 374s *** Open Babel Warning in IsValid 374s Reaction component Ids should all be non-zero positive integers. 374s ============================== 374s *** Open Babel Warning in IsValid 374s The molecule contains an atom that is missing a reaction component Id. Use SetComponentId(). 374s ============================== 374s *** Open Babel Warning in IsValid 374s A reaction component Id has been stored using a data type that is not an OBPairInteger. 374s ============================== 374s *** Open Babel Warning in IsValid 374s The molecule contains a connected component that contains atoms with different reaction component Ids. All atoms in a particular connected component should have the same value. 374s ============================== 374s *** Open Babel Warning in IsValid 374s The molecule contains a connected component that contains atoms with different reaction roles. All atoms in a particular connected component should have the same role. 374s ...........============================== 374s *** Open Babel Warning in ReadMolecule 374s WARNING: Problem interpreting the valence field of an atom 374s The valence field specifies a valence 0 that is 374s less than the observed explicit valence 1. 374s 374s .============================== 374s *** Open Babel Warning in WriteMolecule 374s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 374s ..........============================== 374s *** Open Babel Error in ParseComplex 374s SMILES string contains a character '#' which is invalid 374s ============================== 374s *** Open Babel Error in ParseComplex 374s Element number must be <= 255) 374s ============================== 374s *** Open Babel Error in ParseComplex 374s SMILES string contains a character '#' which is invalid 374s ..============================== 374s *** Open Babel Warning in ParseRingBond 374s Warning: Tetrahedral stereo specified for atom with more than 4 connections. 374s ============================== 374s *** Open Babel Warning in ParseSmiles 374s Failed to kekulize aromatic SMILES 374s 401s ...terminate called after throwing an instance of 'std::bad_alloc' 401s what(): std::bad_alloc 411s /tmp/autopkgtest.DwZ8R5/build.1U3/src/debian/tests/python3: line 9: 2336 Aborted (core dumped) python3 ${TEST} 411s Ignoring test/testbindings.py on armhf ... 411s Running test/testcdjsonformat.py ... 411s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testcdjsonformat.py:5: SyntaxWarning: invalid escape sequence '\P' 411s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 411s .......... 411s ---------------------------------------------------------------------- 411s Running test/testdistgeom.py ... 411s Ran 10 tests in 0.003s 411s 411s OK 411s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testdistgeom.py:7: SyntaxWarning: invalid escape sequence '\P' 411s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 411s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 411s self.stdin = io.open(p2cwrite, 'wb', bufsize) 411s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 411s self.stdout = io.open(c2pread, 'rb', bufsize) 411s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 411s self.stderr = io.open(errread, 'rb', bufsize) 667s . 667s ---------------------------------------------------------------------- 667s Ran 1 test in 256.400s 667s 667s OK 667s Running test/testexample.py ... 667s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testexample.py:5: SyntaxWarning: invalid escape sequence '\P' 667s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 668s .. 668s ---------------------------------------------------------------------- 668s Ran 2 tests in 0.001s 668s 668s OK 668s Running test/testfastsearch.py ... 668s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testfastsearch.py:7: SyntaxWarning: invalid escape sequence '\P' 668s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 668s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testfastsearch.py:33: SyntaxWarning: invalid escape sequence '\C' 668s C1(/[CH]2[CH]3\C(=C4/CC(C)(C)NC(C4)(C)C)C=C[CH]3[CH]1C=C2)=C1/CC(C)(C)NC(C1)(C)C 668s . 668s ---------------------------------------------------------------------- 668s Ran 1 test in 0.078s 668s 668s OK 668s Running test/testkekule.py ... 668s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testkekule.py:7: SyntaxWarning: invalid escape sequence '\P' 668s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 668s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 668s self.stdin = io.open(p2cwrite, 'wb', bufsize) 668s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 668s self.stdout = io.open(c2pread, 'rb', bufsize) 668s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 668s self.stderr = io.open(errread, 'rb', bufsize) 668s ... 668s ---------------------------------------------------------------------- 668s Ran 3 tests in 0.568s 668s 668s OK 668s Running test/testobconv_writers.py ... 669s ........................................................................................................Running test/testpcjsonformat.py ... 669s ..................................... 669s ---------------------------------------------------------------------- 669s Ran 141 tests in 0.098s 669s 669s OK 669s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testpcjsonformat.py:5: SyntaxWarning: invalid escape sequence '\P' 669s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 669s ................. 669s ---------------------------------------------------------------------- 669s Ran 17 tests in 0.014s 669s 669s OK 669s Running test/testpdbformat.py ... 669s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testpdbformat.py:7: SyntaxWarning: invalid escape sequence '\P' 669s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 669s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 669s self.stdin = io.open(p2cwrite, 'wb', bufsize) 669s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 669s self.stdout = io.open(c2pread, 'rb', bufsize) 669s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 669s self.stderr = io.open(errread, 'rb', bufsize) 669s . 669s ---------------------------------------------------------------------- 669s Ran 1 test in 0.025s 669s 669s OK 669s Skipping test/testroundtrip.py ... 669s Running test/testsmartssym.py ... 669s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testsmartssym.py:7: SyntaxWarning: invalid escape sequence '\P' 669s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 669s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 669s self.stdin = io.open(p2cwrite, 'wb', bufsize) 669s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 669s self.stdout = io.open(c2pread, 'rb', bufsize) 669s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 669s self.stderr = io.open(errread, 'rb', bufsize) 670s .... 670s ---------------------------------------------------------------------- 670s Ran 4 tests in 1.118s 670s 670s OK 670s Skipping test/testsym.py ... 670s Running test/testunique.py ... 670s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testunique.py:7: SyntaxWarning: invalid escape sequence '\P' 670s "C:\Program Files\CMake 2.6\bin\ctest.exe" -C CTestTestfile.cmake 670s /tmp/autopkgtest.DwZ8R5/build.1U3/src/test/testunique.py:34: SyntaxWarning: invalid escape sequence '\F' 670s F/C=C\F cis-difluoroethene 670s /usr/lib/python3.13/subprocess.py:1020: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 670s self.stdin = io.open(p2cwrite, 'wb', bufsize) 670s /usr/lib/python3.13/subprocess.py:1026: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 670s self.stdout = io.open(c2pread, 'rb', bufsize) 670s /usr/lib/python3.13/subprocess.py:1031: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 670s self.stderr = io.open(errread, 'rb', bufsize) 670s . 670s ---------------------------------------------------------------------- 670s Ran 1 test in 0.265s 670s 670s OK 671s autopkgtest [15:08:52]: test python3: -----------------------] 674s autopkgtest [15:08:55]: test python3: - - - - - - - - - - results - - - - - - - - - - 674s python3 PASS 678s autopkgtest [15:08:59]: @@@@@@@@@@@@@@@@@@@@ summary 678s python3 PASS