0s autopkgtest [18:40:10]: starting date and time: 2024-11-13 18:40:10+0000 0s autopkgtest [18:40:10]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [18:40:10]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8ks170uj/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade openbabel --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.51 lxd-armhf-10.145.243.51:autopkgtest/ubuntu/plucky/armhf 52s autopkgtest [18:41:02]: testbed dpkg architecture: armhf 54s autopkgtest [18:41:04]: testbed apt version: 2.9.8 54s autopkgtest [18:41:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 63s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 63s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [971 kB] 63s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 63s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [106 kB] 63s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [647 kB] 63s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 63s Fetched 1943 kB in 1s (1911 kB/s) 64s Reading package lists... 82s tee: /proc/self/fd/2: Permission denied 103s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 104s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 104s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 104s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 105s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s Calculating upgrade... 106s The following NEW packages will be installed: 106s python3.13-gdbm 106s The following packages will be upgraded: 106s libgnutls30t64 libjson-glib-1.0-0 libjson-glib-1.0-common libpython3-stdlib 106s libutempter0 python3 python3-gdbm python3-minimal 106s 8 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 1131 kB of archives. 106s After this operation, 95.2 kB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 107s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 107s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 107s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 107s Fetched 1131 kB in 1s (2063 kB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 107s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 107s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 107s Setting up python3-minimal (3.12.7-1) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 107s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 107s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 107s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 107s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 108s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_armhf.deb ... 108s Unpacking libgnutls30t64:armhf (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 108s Setting up libgnutls30t64:armhf (3.8.8-2ubuntu1) ... 108s Selecting previously unselected package python3.13-gdbm. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 108s Preparing to unpack .../python3.13-gdbm_3.13.0-2_armhf.deb ... 108s Unpacking python3.13-gdbm (3.13.0-2) ... 108s Preparing to unpack .../python3-gdbm_3.12.7-1_armhf.deb ... 108s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 108s Preparing to unpack .../libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 108s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 108s Preparing to unpack .../libjson-glib-1.0-0_1.10.0+ds-3_armhf.deb ... 108s Unpacking libjson-glib-1.0-0:armhf (1.10.0+ds-3) over (1.10.0+ds-2) ... 108s Preparing to unpack .../libutempter0_1.2.1-4_armhf.deb ... 108s Unpacking libutempter0:armhf (1.2.1-4) over (1.2.1-3build1) ... 108s Setting up libutempter0:armhf (1.2.1-4) ... 108s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 108s Setting up python3.13-gdbm (3.13.0-2) ... 108s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 108s Setting up python3 (3.12.7-1) ... 108s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 108s Setting up python3-gdbm:armhf (3.12.7-1) ... 108s Processing triggers for man-db (2.12.1-3) ... 109s Processing triggers for libc-bin (2.40-1ubuntu3) ... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s autopkgtest [18:42:02]: rebooting testbed after setup commands that affected boot 182s autopkgtest [18:43:12]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 213s autopkgtest [18:43:43]: @@@@@@@@@@@@@@@@@@@@ apt-source openbabel 252s Get:1 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu1 (dsc) [2896 B] 252s Get:2 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu1 (tar) [21.8 MB] 252s Get:3 http://ftpmaster.internal/ubuntu plucky/universe openbabel 3.1.1+dfsg-11ubuntu1 (diff) [22.0 kB] 252s gpgv: Signature made Mon Oct 21 10:43:56 2024 UTC 252s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 252s gpgv: Can't check signature: No public key 252s dpkg-source: warning: cannot verify inline signature for ./openbabel_3.1.1+dfsg-11ubuntu1.dsc: no acceptable signature found 255s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/src/CMakeLists.txt more than once 255s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/CMakeLists.txt more than once 255s dpkg-source: warning: diff 'src/debian/patches/2315.patch' patches file src/OpenBabel3Config.cmake.in more than once 255s autopkgtest [18:44:25]: testing package openbabel version 3.1.1+dfsg-11ubuntu1 257s autopkgtest [18:44:27]: build not needed 266s autopkgtest [18:44:36]: test python3: preparing testbed 277s Reading package lists... 277s Building dependency tree... 277s Reading state information... 277s Starting pkgProblemResolver with broken count: 0 278s Starting 2 pkgProblemResolver with broken count: 0 278s Done 278s The following additional packages will be installed: 278s adwaita-icon-theme at-spi2-common dconf-gsettings-backend dconf-service 278s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 278s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme 278s libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 278s libavahi-common-data libavahi-common3 libboost-iostreams1.83.0 278s libcairo-gobject2 libcairo2 libchemistry-openbabel-perl libcolord2 278s libcups2t64 libdatrie1 libdconf1 libdeflate0 libepoxy0 libfontconfig1 278s libfreetype6 libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgomp1 278s libgraphite2-3 libgtk-3-0t64 libgtk-3-common libharfbuzz0b libice6 libinchi1 278s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery liblcms2-2 liblerc4 278s libmaeparser1 libnotify4 libopenbabel-dev libopenbabel-doc libopenbabel7 278s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-32-0 278s libpixman-1-0 libpython3.12t64 libsharpyuv0 libsm6 libthai-data libthai0 278s libtiff6 libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 278s libwxbase3.2-1t64 libwxgtk3.2-1t64 libxcb-render0 libxcb-shm0 libxcomposite1 278s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 278s libxrender1 libxtst6 openbabel openbabel-gui python3-openbabel ubuntu-mono 278s x11-common 278s Suggested packages: 278s adwaita-icon-theme-legacy colord cups-common gvfs liblcms2-utils 278s notification-daemon 278s Recommended packages: 278s librsvg2-common at-spi2-core libgdk-pixbuf2.0-bin libgtk-3-bin 278s javascript-common 278s The following NEW packages will be installed: 278s adwaita-icon-theme at-spi2-common autopkgtest-satdep dconf-gsettings-backend 278s dconf-service fontconfig fontconfig-config fonts-dejavu-core 278s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 278s humanity-icon-theme libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 278s libavahi-client3 libavahi-common-data libavahi-common3 278s libboost-iostreams1.83.0 libcairo-gobject2 libcairo2 278s libchemistry-openbabel-perl libcolord2 libcups2t64 libdatrie1 libdconf1 278s libdeflate0 libepoxy0 libfontconfig1 libfreetype6 libgdk-pixbuf-2.0-0 278s libgdk-pixbuf2.0-common libgomp1 libgraphite2-3 libgtk-3-0t64 278s libgtk-3-common libharfbuzz0b libice6 libinchi1 libjbig0 libjpeg-turbo8 278s libjpeg8 libjs-jquery liblcms2-2 liblerc4 libmaeparser1 libnotify4 278s libopenbabel-dev libopenbabel-doc libopenbabel7 libpango-1.0-0 278s libpangocairo-1.0-0 libpangoft2-1.0-0 libpcre2-32-0 libpixman-1-0 278s libpython3.12t64 libsharpyuv0 libsm6 libthai-data libthai0 libtiff6 278s libwayland-client0 libwayland-cursor0 libwayland-egl1 libwebp7 278s libwxbase3.2-1t64 libwxgtk3.2-1t64 libxcb-render0 libxcb-shm0 libxcomposite1 278s libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 libxrandr2 278s libxrender1 libxtst6 openbabel openbabel-gui python3-openbabel ubuntu-mono 278s x11-common 278s 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. 278s Need to get 31.2 MB/31.2 MB of archives. 278s After this operation, 136 MB of additional disk space will be used. 278s Get:1 /tmp/autopkgtest.H0IPxk/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [752 B] 279s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [7888 B] 279s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 279s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 279s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 279s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 279s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 279s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 279s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 279s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 279s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.12+dfsg-1 [135 kB] 279s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf gtk-update-icon-cache armhf 4.16.5+ds-1 [50.6 kB] 279s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf hicolor-icon-theme all 0.18-1 [13.5 kB] 279s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf humanity-icon-theme all 0.6.16 [1282 kB] 279s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf ubuntu-mono all 24.04-0ubuntu1 [151 kB] 279s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf adwaita-icon-theme all 47.0-2 [525 kB] 279s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf at-spi2-common all 2.54.0-1 [8774 B] 279s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libdconf1 armhf 0.40.0-4build2 [38.4 kB] 279s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf dconf-service armhf 0.40.0-4build2 [27.4 kB] 279s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf dconf-gsettings-backend armhf 0.40.0-4build2 [23.6 kB] 279s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 279s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 279s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 279s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 279s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 279s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig armhf 2.15.0-1.1ubuntu2 [189 kB] 279s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libatk1.0-0t64 armhf 2.54.0-1 [48.0 kB] 279s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libxi6 armhf 2:1.8.2-1 [26.5 kB] 279s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libatspi2.0-0t64 armhf 2.54.0-1 [70.8 kB] 279s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libatk-bridge2.0-0t64 armhf 2.54.0-1 [59.6 kB] 279s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common-data armhf 0.8-13ubuntu6 [29.7 kB] 279s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-common3 armhf 0.8-13ubuntu6 [20.2 kB] 279s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libavahi-client3 armhf 0.8-13ubuntu6 [24.2 kB] 279s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libboost-iostreams1.83.0 armhf 1.83.0-3.2ubuntu2 [257 kB] 279s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 279s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 279s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 279s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 279s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 279s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo-gobject2 armhf 1.18.2-2 [126 kB] 279s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 279s Get:42 http://ftpmaster.internal/ubuntu plucky/universe armhf libinchi1 armhf 1.03+dfsg-4build1 [389 kB] 279s Get:43 http://ftpmaster.internal/ubuntu plucky/universe armhf libmaeparser1 armhf 1.3.1-1build1 [89.3 kB] 279s Get:44 http://ftpmaster.internal/ubuntu plucky/universe armhf libopenbabel7 armhf 3.1.1+dfsg-11ubuntu1 [3232 kB] 280s Get:45 http://ftpmaster.internal/ubuntu plucky/universe armhf libchemistry-openbabel-perl armhf 3.1.1+dfsg-11ubuntu1 [757 kB] 280s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 280s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libcolord2 armhf 1.4.7-1build2 [133 kB] 280s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libcups2t64 armhf 2.4.10-1ubuntu2 [239 kB] 280s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB] 280s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libepoxy0 armhf 1.5.10-2 [192 kB] 280s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 280s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 280s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libthai-data all 0.1.29-2build1 [158 kB] 280s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB] 280s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libpango-1.0-0 armhf 1.54.0+ds-3 [212 kB] 280s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libpangoft2-1.0-0 armhf 1.54.0+ds-3 [42.9 kB] 280s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libpangocairo-1.0-0 armhf 1.54.0+ds-3 [24.8 kB] 280s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-client0 armhf 1.23.0-1 [22.7 kB] 280s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-cursor0 armhf 1.23.0-1 [9672 B] 280s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-egl1 armhf 1.23.0-1 [5352 B] 280s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libxcomposite1 armhf 1:0.4.6-1 [6060 B] 280s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libxfixes3 armhf 1:6.0.0-2build1 [9038 B] 280s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libxcursor1 armhf 1:1.2.2-1 [17.6 kB] 280s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libxdamage1 armhf 1:1.1.6-1build1 [5462 B] 280s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libxinerama1 armhf 2:1.1.4-3build1 [5866 B] 280s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libxrandr2 armhf 2:1.5.4-1 [15.8 kB] 280s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libgtk-3-common all 3.24.43-3ubuntu2 [1202 kB] 280s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf libgtk-3-0t64 armhf 3.24.43-3ubuntu2 [2608 kB] 280s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 280s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libice6 armhf 2:1.1.1-1 [36.5 kB] 280s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 280s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libnotify4 armhf 0.8.3-1build2 [23.7 kB] 280s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf libopenbabel-dev armhf 3.1.1+dfsg-11ubuntu1 [181 kB] 280s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf libopenbabel-doc all 3.1.1+dfsg-11ubuntu1 [5610 kB] 280s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libpcre2-32-0 armhf 10.42-4ubuntu3 [176 kB] 280s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12t64 armhf 3.12.7-3 [2075 kB] 281s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libsm6 armhf 2:1.2.4-1 [15.1 kB] 281s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf libwxbase3.2-1t64 armhf 3.2.5+dfsg-1 [1004 kB] 281s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libxtst6 armhf 2:1.2.3-1.1build1 [10.7 kB] 281s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf libwxgtk3.2-1t64 armhf 3.2.5+dfsg-1 [4351 kB] 281s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf openbabel armhf 3.1.1+dfsg-11ubuntu1 [129 kB] 281s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf openbabel-gui armhf 3.1.1+dfsg-11ubuntu1 [84.1 kB] 281s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-openbabel armhf 3.1.1+dfsg-11ubuntu1 [588 kB] 281s Fetched 31.2 MB in 2s (12.9 MB/s) 281s Selecting previously unselected package libgdk-pixbuf2.0-common. 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 281s Preparing to unpack .../00-libgdk-pixbuf2.0-common_2.42.12+dfsg-1_all.deb ... 281s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... 281s Selecting previously unselected package libjpeg-turbo8:armhf. 281s Preparing to unpack .../01-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 281s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 281s Selecting previously unselected package libjpeg8:armhf. 281s Preparing to unpack .../02-libjpeg8_8c-2ubuntu11_armhf.deb ... 281s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 281s Selecting previously unselected package libdeflate0:armhf. 281s Preparing to unpack .../03-libdeflate0_1.22-1_armhf.deb ... 281s Unpacking libdeflate0:armhf (1.22-1) ... 281s Selecting previously unselected package libjbig0:armhf. 281s Preparing to unpack .../04-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 281s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 281s Selecting previously unselected package liblerc4:armhf. 282s Preparing to unpack .../05-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 282s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 282s Selecting previously unselected package libsharpyuv0:armhf. 282s Preparing to unpack .../06-libsharpyuv0_1.4.0-0.1_armhf.deb ... 282s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 282s Selecting previously unselected package libwebp7:armhf. 282s Preparing to unpack .../07-libwebp7_1.4.0-0.1_armhf.deb ... 282s Unpacking libwebp7:armhf (1.4.0-0.1) ... 282s Selecting previously unselected package libtiff6:armhf. 282s Preparing to unpack .../08-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 282s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 282s Selecting previously unselected package libgdk-pixbuf-2.0-0:armhf. 282s Preparing to unpack .../09-libgdk-pixbuf-2.0-0_2.42.12+dfsg-1_armhf.deb ... 282s Unpacking libgdk-pixbuf-2.0-0:armhf (2.42.12+dfsg-1) ... 282s Selecting previously unselected package gtk-update-icon-cache. 282s Preparing to unpack .../10-gtk-update-icon-cache_4.16.5+ds-1_armhf.deb ... 282s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 282s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 282s Unpacking gtk-update-icon-cache (4.16.5+ds-1) ... 282s Selecting previously unselected package hicolor-icon-theme. 282s Preparing to unpack .../11-hicolor-icon-theme_0.18-1_all.deb ... 282s Unpacking hicolor-icon-theme (0.18-1) ... 282s Selecting previously unselected package humanity-icon-theme. 282s Preparing to unpack .../12-humanity-icon-theme_0.6.16_all.deb ... 282s Unpacking humanity-icon-theme (0.6.16) ... 283s Selecting previously unselected package ubuntu-mono. 283s Preparing to unpack .../13-ubuntu-mono_24.04-0ubuntu1_all.deb ... 283s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 283s Selecting previously unselected package adwaita-icon-theme. 283s Preparing to unpack .../14-adwaita-icon-theme_47.0-2_all.deb ... 283s Unpacking adwaita-icon-theme (47.0-2) ... 283s Selecting previously unselected package at-spi2-common. 283s Preparing to unpack .../15-at-spi2-common_2.54.0-1_all.deb ... 283s Unpacking at-spi2-common (2.54.0-1) ... 283s Selecting previously unselected package libdconf1:armhf. 283s Preparing to unpack .../16-libdconf1_0.40.0-4build2_armhf.deb ... 283s Unpacking libdconf1:armhf (0.40.0-4build2) ... 283s Selecting previously unselected package dconf-service. 283s Preparing to unpack .../17-dconf-service_0.40.0-4build2_armhf.deb ... 283s Unpacking dconf-service (0.40.0-4build2) ... 283s Selecting previously unselected package dconf-gsettings-backend:armhf. 283s Preparing to unpack .../18-dconf-gsettings-backend_0.40.0-4build2_armhf.deb ... 283s Unpacking dconf-gsettings-backend:armhf (0.40.0-4build2) ... 283s Selecting previously unselected package libfreetype6:armhf. 283s Preparing to unpack .../19-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 283s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 283s Selecting previously unselected package fonts-dejavu-mono. 283s Preparing to unpack .../20-fonts-dejavu-mono_2.37-8_all.deb ... 283s Unpacking fonts-dejavu-mono (2.37-8) ... 283s Selecting previously unselected package fonts-dejavu-core. 283s Preparing to unpack .../21-fonts-dejavu-core_2.37-8_all.deb ... 283s Unpacking fonts-dejavu-core (2.37-8) ... 283s Selecting previously unselected package fontconfig-config. 283s Preparing to unpack .../22-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 284s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 284s Selecting previously unselected package libfontconfig1:armhf. 284s Preparing to unpack .../23-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 284s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 284s Selecting previously unselected package fontconfig. 284s Preparing to unpack .../24-fontconfig_2.15.0-1.1ubuntu2_armhf.deb ... 284s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 284s Selecting previously unselected package libatk1.0-0t64:armhf. 284s Preparing to unpack .../25-libatk1.0-0t64_2.54.0-1_armhf.deb ... 284s Unpacking libatk1.0-0t64:armhf (2.54.0-1) ... 284s Selecting previously unselected package libxi6:armhf. 284s Preparing to unpack .../26-libxi6_2%3a1.8.2-1_armhf.deb ... 284s Unpacking libxi6:armhf (2:1.8.2-1) ... 284s Selecting previously unselected package libatspi2.0-0t64:armhf. 284s Preparing to unpack .../27-libatspi2.0-0t64_2.54.0-1_armhf.deb ... 284s Unpacking libatspi2.0-0t64:armhf (2.54.0-1) ... 284s Selecting previously unselected package libatk-bridge2.0-0t64:armhf. 284s Preparing to unpack .../28-libatk-bridge2.0-0t64_2.54.0-1_armhf.deb ... 284s Unpacking libatk-bridge2.0-0t64:armhf (2.54.0-1) ... 284s Selecting previously unselected package libavahi-common-data:armhf. 284s Preparing to unpack .../29-libavahi-common-data_0.8-13ubuntu6_armhf.deb ... 284s Unpacking libavahi-common-data:armhf (0.8-13ubuntu6) ... 284s Selecting previously unselected package libavahi-common3:armhf. 284s Preparing to unpack .../30-libavahi-common3_0.8-13ubuntu6_armhf.deb ... 284s Unpacking libavahi-common3:armhf (0.8-13ubuntu6) ... 284s Selecting previously unselected package libavahi-client3:armhf. 284s Preparing to unpack .../31-libavahi-client3_0.8-13ubuntu6_armhf.deb ... 284s Unpacking libavahi-client3:armhf (0.8-13ubuntu6) ... 284s Selecting previously unselected package libboost-iostreams1.83.0:armhf. 284s Preparing to unpack .../32-libboost-iostreams1.83.0_1.83.0-3.2ubuntu2_armhf.deb ... 284s Unpacking libboost-iostreams1.83.0:armhf (1.83.0-3.2ubuntu2) ... 284s Selecting previously unselected package libpixman-1-0:armhf. 284s Preparing to unpack .../33-libpixman-1-0_0.44.0-3_armhf.deb ... 284s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 284s Selecting previously unselected package libxcb-render0:armhf. 284s Preparing to unpack .../34-libxcb-render0_1.17.0-2_armhf.deb ... 284s Unpacking libxcb-render0:armhf (1.17.0-2) ... 284s Selecting previously unselected package libxcb-shm0:armhf. 284s Preparing to unpack .../35-libxcb-shm0_1.17.0-2_armhf.deb ... 284s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 284s Selecting previously unselected package libxrender1:armhf. 284s Preparing to unpack .../36-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 284s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 284s Selecting previously unselected package libcairo2:armhf. 284s Preparing to unpack .../37-libcairo2_1.18.2-2_armhf.deb ... 284s Unpacking libcairo2:armhf (1.18.2-2) ... 284s Selecting previously unselected package libcairo-gobject2:armhf. 284s Preparing to unpack .../38-libcairo-gobject2_1.18.2-2_armhf.deb ... 284s Unpacking libcairo-gobject2:armhf (1.18.2-2) ... 284s Selecting previously unselected package libgomp1:armhf. 284s Preparing to unpack .../39-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 284s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 284s Selecting previously unselected package libinchi1. 284s Preparing to unpack .../40-libinchi1_1.03+dfsg-4build1_armhf.deb ... 284s Unpacking libinchi1 (1.03+dfsg-4build1) ... 284s Selecting previously unselected package libmaeparser1:armhf. 284s Preparing to unpack .../41-libmaeparser1_1.3.1-1build1_armhf.deb ... 284s Unpacking libmaeparser1:armhf (1.3.1-1build1) ... 284s Selecting previously unselected package libopenbabel7. 284s Preparing to unpack .../42-libopenbabel7_3.1.1+dfsg-11ubuntu1_armhf.deb ... 284s Unpacking libopenbabel7 (3.1.1+dfsg-11ubuntu1) ... 284s Selecting previously unselected package libchemistry-openbabel-perl. 284s Preparing to unpack .../43-libchemistry-openbabel-perl_3.1.1+dfsg-11ubuntu1_armhf.deb ... 284s Unpacking libchemistry-openbabel-perl (3.1.1+dfsg-11ubuntu1) ... 285s Selecting previously unselected package liblcms2-2:armhf. 285s Preparing to unpack .../44-liblcms2-2_2.16-2_armhf.deb ... 285s Unpacking liblcms2-2:armhf (2.16-2) ... 285s Selecting previously unselected package libcolord2:armhf. 285s Preparing to unpack .../45-libcolord2_1.4.7-1build2_armhf.deb ... 285s Unpacking libcolord2:armhf (1.4.7-1build2) ... 285s Selecting previously unselected package libcups2t64:armhf. 285s Preparing to unpack .../46-libcups2t64_2.4.10-1ubuntu2_armhf.deb ... 285s Unpacking libcups2t64:armhf (2.4.10-1ubuntu2) ... 285s Selecting previously unselected package libdatrie1:armhf. 285s Preparing to unpack .../47-libdatrie1_0.2.13-3build1_armhf.deb ... 285s Unpacking libdatrie1:armhf (0.2.13-3build1) ... 285s Selecting previously unselected package libepoxy0:armhf. 285s Preparing to unpack .../48-libepoxy0_1.5.10-2_armhf.deb ... 285s Unpacking libepoxy0:armhf (1.5.10-2) ... 285s Selecting previously unselected package libgraphite2-3:armhf. 285s Preparing to unpack .../49-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 285s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 285s Selecting previously unselected package libharfbuzz0b:armhf. 285s Preparing to unpack .../50-libharfbuzz0b_10.0.1-1_armhf.deb ... 285s Unpacking libharfbuzz0b:armhf (10.0.1-1) ... 285s Selecting previously unselected package libthai-data. 285s Preparing to unpack .../51-libthai-data_0.1.29-2build1_all.deb ... 285s Unpacking libthai-data (0.1.29-2build1) ... 285s Selecting previously unselected package libthai0:armhf. 285s Preparing to unpack .../52-libthai0_0.1.29-2build1_armhf.deb ... 285s Unpacking libthai0:armhf (0.1.29-2build1) ... 285s Selecting previously unselected package libpango-1.0-0:armhf. 285s Preparing to unpack .../53-libpango-1.0-0_1.54.0+ds-3_armhf.deb ... 285s Unpacking libpango-1.0-0:armhf (1.54.0+ds-3) ... 285s Selecting previously unselected package libpangoft2-1.0-0:armhf. 285s Preparing to unpack .../54-libpangoft2-1.0-0_1.54.0+ds-3_armhf.deb ... 285s Unpacking libpangoft2-1.0-0:armhf (1.54.0+ds-3) ... 285s Selecting previously unselected package libpangocairo-1.0-0:armhf. 285s Preparing to unpack .../55-libpangocairo-1.0-0_1.54.0+ds-3_armhf.deb ... 285s Unpacking libpangocairo-1.0-0:armhf (1.54.0+ds-3) ... 285s Selecting previously unselected package libwayland-client0:armhf. 285s Preparing to unpack .../56-libwayland-client0_1.23.0-1_armhf.deb ... 285s Unpacking libwayland-client0:armhf (1.23.0-1) ... 285s Selecting previously unselected package libwayland-cursor0:armhf. 285s Preparing to unpack .../57-libwayland-cursor0_1.23.0-1_armhf.deb ... 285s Unpacking libwayland-cursor0:armhf (1.23.0-1) ... 285s Selecting previously unselected package libwayland-egl1:armhf. 285s Preparing to unpack .../58-libwayland-egl1_1.23.0-1_armhf.deb ... 285s Unpacking libwayland-egl1:armhf (1.23.0-1) ... 285s Selecting previously unselected package libxcomposite1:armhf. 285s Preparing to unpack .../59-libxcomposite1_1%3a0.4.6-1_armhf.deb ... 285s Unpacking libxcomposite1:armhf (1:0.4.6-1) ... 285s Selecting previously unselected package libxfixes3:armhf. 285s Preparing to unpack .../60-libxfixes3_1%3a6.0.0-2build1_armhf.deb ... 285s Unpacking libxfixes3:armhf (1:6.0.0-2build1) ... 285s Selecting previously unselected package libxcursor1:armhf. 285s Preparing to unpack .../61-libxcursor1_1%3a1.2.2-1_armhf.deb ... 285s Unpacking libxcursor1:armhf (1:1.2.2-1) ... 285s Selecting previously unselected package libxdamage1:armhf. 285s Preparing to unpack .../62-libxdamage1_1%3a1.1.6-1build1_armhf.deb ... 285s Unpacking libxdamage1:armhf (1:1.1.6-1build1) ... 285s Selecting previously unselected package libxinerama1:armhf. 285s Preparing to unpack .../63-libxinerama1_2%3a1.1.4-3build1_armhf.deb ... 285s Unpacking libxinerama1:armhf (2:1.1.4-3build1) ... 285s Selecting previously unselected package libxrandr2:armhf. 285s Preparing to unpack .../64-libxrandr2_2%3a1.5.4-1_armhf.deb ... 285s Unpacking libxrandr2:armhf (2:1.5.4-1) ... 285s Selecting previously unselected package libgtk-3-common. 285s Preparing to unpack .../65-libgtk-3-common_3.24.43-3ubuntu2_all.deb ... 285s Unpacking libgtk-3-common (3.24.43-3ubuntu2) ... 285s Selecting previously unselected package libgtk-3-0t64:armhf. 285s Preparing to unpack .../66-libgtk-3-0t64_3.24.43-3ubuntu2_armhf.deb ... 285s Unpacking libgtk-3-0t64:armhf (3.24.43-3ubuntu2) ... 285s Selecting previously unselected package x11-common. 285s Preparing to unpack .../67-x11-common_1%3a7.7+23ubuntu3_all.deb ... 285s Unpacking x11-common (1:7.7+23ubuntu3) ... 285s Selecting previously unselected package libice6:armhf. 285s Preparing to unpack .../68-libice6_2%3a1.1.1-1_armhf.deb ... 285s Unpacking libice6:armhf (2:1.1.1-1) ... 285s Selecting previously unselected package libjs-jquery. 285s Preparing to unpack .../69-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 285s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 285s Selecting previously unselected package libnotify4:armhf. 285s Preparing to unpack .../70-libnotify4_0.8.3-1build2_armhf.deb ... 285s Unpacking libnotify4:armhf (0.8.3-1build2) ... 285s Selecting previously unselected package libopenbabel-dev. 286s Preparing to unpack .../71-libopenbabel-dev_3.1.1+dfsg-11ubuntu1_armhf.deb ... 286s Unpacking libopenbabel-dev (3.1.1+dfsg-11ubuntu1) ... 286s Selecting previously unselected package libopenbabel-doc. 286s Preparing to unpack .../72-libopenbabel-doc_3.1.1+dfsg-11ubuntu1_all.deb ... 286s Unpacking libopenbabel-doc (3.1.1+dfsg-11ubuntu1) ... 286s Selecting previously unselected package libpcre2-32-0:armhf. 286s Preparing to unpack .../73-libpcre2-32-0_10.42-4ubuntu3_armhf.deb ... 286s Unpacking libpcre2-32-0:armhf (10.42-4ubuntu3) ... 286s Selecting previously unselected package libpython3.12t64:armhf. 286s Preparing to unpack .../74-libpython3.12t64_3.12.7-3_armhf.deb ... 286s Unpacking libpython3.12t64:armhf (3.12.7-3) ... 286s Selecting previously unselected package libsm6:armhf. 286s Preparing to unpack .../75-libsm6_2%3a1.2.4-1_armhf.deb ... 286s Unpacking libsm6:armhf (2:1.2.4-1) ... 286s Selecting previously unselected package libwxbase3.2-1t64:armhf. 286s Preparing to unpack .../76-libwxbase3.2-1t64_3.2.5+dfsg-1_armhf.deb ... 286s Unpacking libwxbase3.2-1t64:armhf (3.2.5+dfsg-1) ... 286s Selecting previously unselected package libxtst6:armhf. 286s Preparing to unpack .../77-libxtst6_2%3a1.2.3-1.1build1_armhf.deb ... 286s Unpacking libxtst6:armhf (2:1.2.3-1.1build1) ... 286s Selecting previously unselected package libwxgtk3.2-1t64:armhf. 286s Preparing to unpack .../78-libwxgtk3.2-1t64_3.2.5+dfsg-1_armhf.deb ... 286s Unpacking libwxgtk3.2-1t64:armhf (3.2.5+dfsg-1) ... 286s Selecting previously unselected package openbabel. 286s Preparing to unpack .../79-openbabel_3.1.1+dfsg-11ubuntu1_armhf.deb ... 286s Unpacking openbabel (3.1.1+dfsg-11ubuntu1) ... 286s Selecting previously unselected package openbabel-gui. 286s Preparing to unpack .../80-openbabel-gui_3.1.1+dfsg-11ubuntu1_armhf.deb ... 286s Unpacking openbabel-gui (3.1.1+dfsg-11ubuntu1) ... 286s Selecting previously unselected package python3-openbabel. 286s Preparing to unpack .../81-python3-openbabel_3.1.1+dfsg-11ubuntu1_armhf.deb ... 286s Unpacking python3-openbabel (3.1.1+dfsg-11ubuntu1) ... 286s Selecting previously unselected package autopkgtest-satdep. 286s Preparing to unpack .../82-1-autopkgtest-satdep.deb ... 286s Unpacking autopkgtest-satdep (0) ... 286s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 286s Setting up liblcms2-2:armhf (2.16-2) ... 286s Setting up libpixman-1-0:armhf (0.44.0-3) ... 286s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 286s Setting up libxdamage1:armhf (1:1.1.6-1build1) ... 286s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 286s Setting up hicolor-icon-theme (0.18-1) ... 286s Setting up libxi6:armhf (2:1.8.2-1) ... 286s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 286s Setting up libdatrie1:armhf (0.2.13-3build1) ... 286s Setting up libxcb-render0:armhf (1.17.0-2) ... 286s Setting up libgdk-pixbuf2.0-common (2.42.12+dfsg-1) ... 286s Setting up x11-common (1:7.7+23ubuntu3) ... 287s Setting up libdeflate0:armhf (1.22-1) ... 287s Setting up libxcb-shm0:armhf (1.17.0-2) ... 287s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 287s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 287s Setting up libcolord2:armhf (1.4.7-1build2) ... 287s Setting up libdconf1:armhf (0.40.0-4build2) ... 287s Setting up libpython3.12t64:armhf (3.12.7-3) ... 287s Setting up libpcre2-32-0:armhf (10.42-4ubuntu3) ... 287s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 287s Setting up libepoxy0:armhf (1.5.10-2) ... 287s Setting up libxfixes3:armhf (1:6.0.0-2build1) ... 287s Setting up libboost-iostreams1.83.0:armhf (1.83.0-3.2ubuntu2) ... 287s Setting up libavahi-common-data:armhf (0.8-13ubuntu6) ... 287s Setting up libatspi2.0-0t64:armhf (2.54.0-1) ... 287s Setting up libxinerama1:armhf (2:1.1.4-3build1) ... 287s Setting up fonts-dejavu-mono (2.37-8) ... 287s Setting up libxrandr2:armhf (2:1.5.4-1) ... 287s Setting up fonts-dejavu-core (2.37-8) ... 287s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 287s Setting up libwebp7:armhf (1.4.0-0.1) ... 287s Setting up at-spi2-common (2.54.0-1) ... 287s Setting up libharfbuzz0b:armhf (10.0.1-1) ... 287s Setting up libthai-data (0.1.29-2build1) ... 287s Setting up libwayland-egl1:armhf (1.23.0-1) ... 287s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 287s Setting up libwxbase3.2-1t64:armhf (3.2.5+dfsg-1) ... 287s Setting up libxcomposite1:armhf (1:0.4.6-1) ... 287s Setting up libinchi1 (1.03+dfsg-4build1) ... 287s Setting up libwayland-client0:armhf (1.23.0-1) ... 287s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 287s Setting up libice6:armhf (2:1.1.1-1) ... 287s Setting up libatk1.0-0t64:armhf (2.54.0-1) ... 287s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 287s Setting up libxtst6:armhf (2:1.2.3-1.1build1) ... 287s Setting up libxcursor1:armhf (1:1.2.2-1) ... 287s Setting up libavahi-common3:armhf (0.8-13ubuntu6) ... 287s Setting up dconf-service (0.40.0-4build2) ... 287s Setting up libopenbabel-doc (3.1.1+dfsg-11ubuntu1) ... 287s Setting up libmaeparser1:armhf (1.3.1-1build1) ... 287s Setting up libthai0:armhf (0.1.29-2build1) ... 287s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 287s Setting up libwayland-cursor0:armhf (1.23.0-1) ... 287s Setting up libgdk-pixbuf-2.0-0:armhf (2.42.12+dfsg-1) ... 287s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 287s Setting up libsm6:armhf (2:1.2.4-1) ... 287s Setting up libavahi-client3:armhf (0.8-13ubuntu6) ... 287s Setting up libatk-bridge2.0-0t64:armhf (2.54.0-1) ... 287s Setting up gtk-update-icon-cache (4.16.5+ds-1) ... 287s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 289s Regenerating fonts cache... done. 289s Setting up dconf-gsettings-backend:armhf (0.40.0-4build2) ... 289s Setting up libpango-1.0-0:armhf (1.54.0+ds-3) ... 289s Setting up libcairo2:armhf (1.18.2-2) ... 289s Setting up libnotify4:armhf (0.8.3-1build2) ... 289s Setting up libcairo-gobject2:armhf (1.18.2-2) ... 289s Setting up libpangoft2-1.0-0:armhf (1.54.0+ds-3) ... 289s Setting up libcups2t64:armhf (2.4.10-1ubuntu2) ... 289s Setting up libgtk-3-common (3.24.43-3ubuntu2) ... 289s Setting up libpangocairo-1.0-0:armhf (1.54.0+ds-3) ... 289s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu1) ... 289s Setting up libopenbabel-dev (3.1.1+dfsg-11ubuntu1) ... 289s Setting up libchemistry-openbabel-perl (3.1.1+dfsg-11ubuntu1) ... 289s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu1) ... 289s Setting up openbabel (3.1.1+dfsg-11ubuntu1) ... 289s Setting up adwaita-icon-theme (47.0-2) ... 289s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 289s Setting up humanity-icon-theme (0.6.16) ... 289s Setting up ubuntu-mono (24.04-0ubuntu1) ... 289s Processing triggers for man-db (2.12.1-3) ... 290s Processing triggers for libglib2.0-0t64:armhf (2.82.1-0ubuntu1) ... 290s Setting up libgtk-3-0t64:armhf (3.24.43-3ubuntu2) ... 290s Setting up libwxgtk3.2-1t64:armhf (3.2.5+dfsg-1) ... 290s Processing triggers for libc-bin (2.40-1ubuntu3) ... 290s Setting up openbabel-gui (3.1.1+dfsg-11ubuntu1) ... 290s Setting up autopkgtest-satdep (0) ... 326s (Reading database ... 74994 files and directories currently installed.) 326s Removing autopkgtest-satdep (0) ... 335s autopkgtest [18:45:45]: test python3: [----------------------- 337s Running test/testRInChI.py ... 337s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testRInChI.py:1: SyntaxWarning: invalid escape sequence '\P' 337s """Test OpenBabel executables from Python 337s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testbabel.py:1: SyntaxWarning: invalid escape sequence '\P' 337s """Test OpenBabel executables from Python 337s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d' 337s pat = "(-?\d.*) molecule(?:s?) converted" 338s .. 338s ---------------------------------------------------------------------- 338s Ran 2 tests in 0.931s 338s 338s OK 338s Running test/test_pybel.py ... 338s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/test_pybel.py:1: SyntaxWarning: invalid escape sequence '\P' 338s """Test OpenBabel Python bindings 338s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testbindings.py:1: SyntaxWarning: invalid escape sequence '\P' 338s """Test OpenBabel Python bindings 339s .........................============================== 339s *** Open Babel Warning in WriteMolecule 339s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 339s .....============================== 339s *** Open Babel Error in SMARTSError 339s SMARTS Error: 339s [#NOEL][#NOEL] 339s ^ 339s 339s .... 339s ---------------------------------------------------------------------- 339s Ran 34 tests in 0.559s 339s 339s OK 339s Running test/testbabel.py ... 339s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testbabel.py:1: SyntaxWarning: invalid escape sequence '\P' 339s """Test OpenBabel executables from Python 339s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testbabel.py:101: SyntaxWarning: invalid escape sequence '\d' 339s pat = "(-?\d.*) molecule(?:s?) converted" 340s ......./usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 340s self.stdin = io.open(p2cwrite, 'wb', bufsize) 340s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 340s self.stdout = io.open(c2pread, 'rb', bufsize) 340s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 340s self.stderr = io.open(errread, 'rb', bufsize) 342s ...... 342s ---------------------------------------------------------------------- 342s Ran 13 tests in 3.055s 342s 342s OK 342s Running test/testbindings.py ... 342s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testbindings.py:1: SyntaxWarning: invalid escape sequence '\P' 342s """Test OpenBabel Python bindings 342s ...============================== 342s *** Open Babel Warning in WriteMolecule 342s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 342s ....============================== 342s *** Open Babel Warning in ParseSmiles 342s Too many greater-than signs in SMILES string 342s 342s ============================== 342s *** Open Babel Warning in ParseSmiles 342s Too many greater-than signs in SMILES string 342s 342s ============================== 342s *** Open Babel Warning in ParseSmiles 342s Too many greater-than signs in SMILES string 342s 342s ============================== 342s *** Open Babel Warning in ParseSmiles 342s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 342s ============================== 342s *** Open Babel Warning in ParseSmiles 342s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 342s ============================== 342s *** Open Babel Warning in ParseSmiles 342s Invalid reaction SMILES string: only a single '>' sign found (two required to be valid). 342s ..============================== 342s *** Open Babel Warning in IsValid 342s The molecule is not marked as a reaction. Use SetIsReaction(). 342s ============================== 342s *** Open Babel Warning in IsValid 342s Reaction roles should be in the range 0 to 3 inclusive. 342s ============================== 342s *** Open Babel Warning in IsValid 342s Reaction component Ids should all be non-zero positive integers. 342s ============================== 342s *** Open Babel Warning in IsValid 342s The molecule contains an atom that is missing a reaction component Id. Use SetComponentId(). 342s ============================== 342s *** Open Babel Warning in IsValid 342s A reaction component Id has been stored using a data type that is not an OBPairInteger. 342s ============================== 342s *** Open Babel Warning in IsValid 342s The molecule contains a connected component that contains atoms with different reaction component Ids. All atoms in a particular connected component should have the same value. 342s ============================== 342s *** Open Babel Warning in IsValid 342s The molecule contains a connected component that contains atoms with different reaction roles. All atoms in a particular connected component should have the same role. 342s ...........============================== 342s *** Open Babel Warning in ReadMolecule 342s WARNING: Problem interpreting the valence field of an atom 342s The valence field specifies a valence 0 that is 342s less than the observed explicit valence 1. 342s 342s .============================== 342s *** Open Babel Warning in WriteMolecule 342s No 2D or 3D coordinates exist. Stereochemical information will be stored using an Open Babel extension. To generate 2D or 3D coordinates instead use --gen2D or --gen3D. 342s ..........============================== 342s *** Open Babel Error in ParseComplex 342s SMILES string contains a character '#' which is invalid 342s ============================== 342s *** Open Babel Error in ParseComplex 342s Element number must be <= 255) 342s ============================== 342s *** Open Babel Error in ParseComplex 342s SMILES string contains a character '#' which is invalid 342s ..============================== 342s *** Open Babel Warning in ParseRingBond 342s Warning: Tetrahedral stereo specified for atom with more than 4 connections. 342s ============================== 342s *** Open Babel Warning in ParseSmiles 342s Failed to kekulize aromatic SMILES 342s 373s ...terminate called after throwing an instance of 'std::length_error' 373s what(): basic_string::_M_create 382s Ignoring test/testbindings.py on armhf ... 382s Running test/testcdjsonformat.py ... 382s /tmp/autopkgtest.H0IPxk/build.5Op/src/debian/tests/python3: line 9: 2535 Aborted (core dumped) python3 ${TEST} 382s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testcdjsonformat.py:1: SyntaxWarning: invalid escape sequence '\P' 382s """Test ChemDoodle JSON format using the OpenBabel Python bindings 382s .......... 382s ---------------------------------------------------------------------- 382s Ran 10 tests in 0.003s 382s 382s OK 382s Running test/testdistgeom.py ... 382s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testdistgeom.py:1: SyntaxWarning: invalid escape sequence '\P' 382s """Test OpenBabel executables from Python 382s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 382s self.stdin = io.open(p2cwrite, 'wb', bufsize) 382s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 382s self.stdout = io.open(c2pread, 'rb', bufsize) 382s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 382s self.stderr = io.open(errread, 'rb', bufsize) 507s . 507s ---------------------------------------------------------------------- 507s Ran 1 test in 124.408s 507s 507s OK 507s Running test/testexample.py ... 507s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testexample.py:1: SyntaxWarning: invalid escape sequence '\P' 507s """Example test that uses the OpenBabel Python bindings 507s .. 507s ---------------------------------------------------------------------- 507s Ran 2 tests in 0.001s 507s 507s OK 507s Running test/testfastsearch.py ... 507s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testfastsearch.py:1: SyntaxWarning: invalid escape sequence '\P' 507s """Test OpenBabel executables from Python 507s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testfastsearch.py:30: SyntaxWarning: invalid escape sequence '\C' 507s smiles = """C12(C(N(C(=O)C)c3c2cccc3)=O)Nc2c(ccc(c2N1)OCCCC)OCCCC 507s . 507s ---------------------------------------------------------------------- 507s Ran 1 test in 0.068s 507s 507s OK 507s Running test/testkekule.py ... 507s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testkekule.py:1: SyntaxWarning: invalid escape sequence '\P' 507s """Test OpenBabel executables from Python 507s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 507s self.stdin = io.open(p2cwrite, 'wb', bufsize) 507s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 507s self.stdout = io.open(c2pread, 'rb', bufsize) 507s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 507s self.stderr = io.open(errread, 'rb', bufsize) 507s ... 507s ---------------------------------------------------------------------- 507s Ran 3 tests in 0.487s 507s 507s OK 507s Running test/testobconv_writers.py ... 508s ...................................................................................................................Running test/testpcjsonformat.py ... 508s .......................... 508s ---------------------------------------------------------------------- 508s Ran 141 tests in 0.095s 508s 508s OK 508s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testpcjsonformat.py:1: SyntaxWarning: invalid escape sequence '\P' 508s """Test PubChem JSON format using the OpenBabel Python bindings 508s ................. 508s ---------------------------------------------------------------------- 508s Ran 17 tests in 0.013s 508s 508s OK 508s Running test/testpdbformat.py ... 508s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testpdbformat.py:1: SyntaxWarning: invalid escape sequence '\P' 508s """Test OpenBabel executables from Python 508s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 508s self.stdin = io.open(p2cwrite, 'wb', bufsize) 508s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 508s self.stdout = io.open(c2pread, 'rb', bufsize) 508s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 508s self.stderr = io.open(errread, 'rb', bufsize) 508s . 508s ---------------------------------------------------------------------- 508s Ran 1 test in 0.024s 508s 508s OK 508s Skipping test/testroundtrip.py ... 508s Running test/testsmartssym.py ... 508s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testsmartssym.py:1: SyntaxWarning: invalid escape sequence '\P' 508s """Test OpenBabel executables from Python 508s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 508s self.stdin = io.open(p2cwrite, 'wb', bufsize) 508s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 508s self.stdout = io.open(c2pread, 'rb', bufsize) 508s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 508s self.stderr = io.open(errread, 'rb', bufsize) 509s .... 509s ---------------------------------------------------------------------- 509s Ran 4 tests in 0.891s 509s 509s OK 509s Skipping test/testsym.py ... 509s Running test/testunique.py ... 509s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testunique.py:1: SyntaxWarning: invalid escape sequence '\P' 509s """Test OpenBabel executables from Python 509s /tmp/autopkgtest.H0IPxk/build.5Op/src/test/testunique.py:26: SyntaxWarning: invalid escape sequence '\F' 509s self.smiles = """C methane 509s /usr/lib/python3.12/subprocess.py:1010: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 509s self.stdin = io.open(p2cwrite, 'wb', bufsize) 509s /usr/lib/python3.12/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 509s self.stdout = io.open(c2pread, 'rb', bufsize) 509s /usr/lib/python3.12/subprocess.py:1021: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used 509s self.stderr = io.open(errread, 'rb', bufsize) 509s . 509s ---------------------------------------------------------------------- 509s Ran 1 test in 0.218s 509s 509s OK 509s autopkgtest [18:48:39]: test python3: -----------------------] 514s autopkgtest [18:48:44]: test python3: - - - - - - - - - - results - - - - - - - - - - 514s python3 PASS 518s autopkgtest [18:48:48]: @@@@@@@@@@@@@@@@@@@@ summary 518s python3 PASS