0s autopkgtest [16:33:23]: starting date and time: 2024-11-18 16:33:23+0000 0s autopkgtest [16:33:23]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [16:33:23]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vod4aegr/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:h5py,src:sphinx-rtd-theme --apt-upgrade ont-fast5-api --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu1 sphinx-rtd-theme/3.0.2+dfsg-1' -- lxd -r lxd-armhf-10.145.243.227 lxd-armhf-10.145.243.227:autopkgtest/ubuntu/plucky/armhf 56s autopkgtest [16:34:19]: testbed dpkg architecture: armhf 59s autopkgtest [16:34:22]: testbed apt version: 2.9.8 59s autopkgtest [16:34:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 67s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 68s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [814 kB] 68s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 68s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 68s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [71.7 kB] 68s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [79.6 kB] 68s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [584 kB] 68s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3240 B] 68s Fetched 1647 kB in 1s (1688 kB/s) 68s Reading package lists... 87s tee: /proc/self/fd/2: Permission denied 117s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 117s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 117s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 117s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 118s Reading package lists... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s Calculating upgrade... 121s The following NEW packages will be installed: 121s liblsof0 121s The following packages will be upgraded: 121s lsof 121s 1 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 121s Need to get 300 kB of archives. 121s After this operation, 171 kB of additional disk space will be used. 121s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf liblsof0 armhf 4.99.3+dfsg-2 [60.5 kB] 122s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf lsof armhf 4.99.3+dfsg-2 [239 kB] 122s Fetched 300 kB in 1s (521 kB/s) 122s Selecting previously unselected package liblsof0. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59581 files and directories currently installed.) 123s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_armhf.deb ... 123s Unpacking liblsof0 (4.99.3+dfsg-2) ... 123s Preparing to unpack .../lsof_4.99.3+dfsg-2_armhf.deb ... 123s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ... 123s Setting up liblsof0 (4.99.3+dfsg-2) ... 123s Setting up lsof (4.99.3+dfsg-2) ... 123s Processing triggers for man-db (2.13.0-1) ... 123s Processing triggers for libc-bin (2.40-1ubuntu3) ... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s autopkgtest [16:35:31]: rebooting testbed after setup commands that affected boot 199s autopkgtest [16:36:42]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 230s autopkgtest [16:37:13]: @@@@@@@@@@@@@@@@@@@@ apt-source ont-fast5-api 242s Get:1 http://ftpmaster.internal/ubuntu plucky/universe ont-fast5-api 4.1.1+dfsg-4 (dsc) [2236 B] 242s Get:2 http://ftpmaster.internal/ubuntu plucky/universe ont-fast5-api 4.1.1+dfsg-4 (tar) [1384 kB] 242s Get:3 http://ftpmaster.internal/ubuntu plucky/universe ont-fast5-api 4.1.1+dfsg-4 (diff) [4572 B] 242s gpgv: Signature made Wed Aug 28 16:17:26 2024 UTC 242s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 242s gpgv: issuer "tchet@debian.org" 242s gpgv: Can't check signature: No public key 242s dpkg-source: warning: cannot verify inline signature for ./ont-fast5-api_4.1.1+dfsg-4.dsc: no acceptable signature found 243s autopkgtest [16:37:26]: testing package ont-fast5-api version 4.1.1+dfsg-4 245s autopkgtest [16:37:28]: build not needed 248s autopkgtest [16:37:31]: test run-unit-test: preparing testbed 259s Reading package lists... 260s Building dependency tree... 260s Reading state information... 261s Starting pkgProblemResolver with broken count: 0 261s Starting 2 pkgProblemResolver with broken count: 0 261s Done 262s The following additional packages will be installed: 262s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 262s liblzf1 libsz2 libvbz-hdf-plugin-dev libvbz-hdf-plugin0t64 ont-fast5-api 262s python3-all python3-h5py python3-h5py-serial python3-numpy python3-packaging 262s python3-progressbar 262s Suggested packages: 262s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 262s The following NEW packages will be installed: 262s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 262s libhdf5-hl-100t64 liblapack3 liblzf1 libsz2 libvbz-hdf-plugin-dev 262s libvbz-hdf-plugin0t64 ont-fast5-api python3-all python3-h5py 262s python3-h5py-serial python3-numpy python3-packaging python3-progressbar 262s 0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded. 262s Need to get 9536 kB/9536 kB of archives. 262s After this operation, 37.6 MB of additional disk space will be used. 262s Get:1 /tmp/autopkgtest.B1DSoQ/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B] 263s Get:2 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 263s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 263s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 263s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 263s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 263s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 263s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 263s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B] 263s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf libvbz-hdf-plugin0t64 armhf 1.0.2-3.1build1 [17.4 kB] 263s Get:11 http://ftpmaster.internal/ubuntu plucky/universe armhf libvbz-hdf-plugin-dev armhf 1.0.2-3.1build1 [14.4 kB] 263s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11ubuntu1 [3975 kB] 263s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py-serial armhf 3.11.0-8ubuntu1 [1474 kB] 263s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py all 3.11.0-8ubuntu1 [7982 B] 263s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.2-1 [51.5 kB] 263s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-progressbar all 2.5-4 [11.0 kB] 263s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf ont-fast5-api armhf 4.1.1+dfsg-4 [46.5 kB] 263s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.12.6-0ubuntu1 [886 B] 264s Fetched 9536 kB in 1s (9436 kB/s) 264s Selecting previously unselected package libaec0:armhf. 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59586 files and directories currently installed.) 264s Preparing to unpack .../00-libaec0_1.1.3-1_armhf.deb ... 264s Unpacking libaec0:armhf (1.1.3-1) ... 264s Selecting previously unselected package libblas3:armhf. 264s Preparing to unpack .../01-libblas3_3.12.0-3build2_armhf.deb ... 264s Unpacking libblas3:armhf (3.12.0-3build2) ... 264s Selecting previously unselected package libgfortran5:armhf. 264s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 264s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 264s Selecting previously unselected package libsz2:armhf. 264s Preparing to unpack .../03-libsz2_1.1.3-1_armhf.deb ... 264s Unpacking libsz2:armhf (1.1.3-1) ... 264s Selecting previously unselected package libhdf5-103-1t64:armhf. 264s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 264s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 264s Selecting previously unselected package libhdf5-hl-100t64:armhf. 264s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 264s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 264s Selecting previously unselected package liblapack3:armhf. 264s Preparing to unpack .../06-liblapack3_3.12.0-3build2_armhf.deb ... 264s Unpacking liblapack3:armhf (3.12.0-3build2) ... 265s Selecting previously unselected package liblzf1:armhf. 265s Preparing to unpack .../07-liblzf1_3.6-4_armhf.deb ... 265s Unpacking liblzf1:armhf (3.6-4) ... 265s Selecting previously unselected package libvbz-hdf-plugin0t64:armhf. 265s Preparing to unpack .../08-libvbz-hdf-plugin0t64_1.0.2-3.1build1_armhf.deb ... 265s Unpacking libvbz-hdf-plugin0t64:armhf (1.0.2-3.1build1) ... 265s Selecting previously unselected package libvbz-hdf-plugin-dev:armhf. 265s Preparing to unpack .../09-libvbz-hdf-plugin-dev_1.0.2-3.1build1_armhf.deb ... 265s Unpacking libvbz-hdf-plugin-dev:armhf (1.0.2-3.1build1) ... 265s Selecting previously unselected package python3-numpy. 265s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-11ubuntu1_armhf.deb ... 265s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 265s Selecting previously unselected package python3-h5py-serial. 265s Preparing to unpack .../11-python3-h5py-serial_3.11.0-8ubuntu1_armhf.deb ... 265s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 265s Selecting previously unselected package python3-h5py. 265s Preparing to unpack .../12-python3-h5py_3.11.0-8ubuntu1_all.deb ... 265s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 265s Selecting previously unselected package python3-packaging. 265s Preparing to unpack .../13-python3-packaging_24.2-1_all.deb ... 265s Unpacking python3-packaging (24.2-1) ... 265s Selecting previously unselected package python3-progressbar. 265s Preparing to unpack .../14-python3-progressbar_2.5-4_all.deb ... 265s Unpacking python3-progressbar (2.5-4) ... 265s Selecting previously unselected package ont-fast5-api. 265s Preparing to unpack .../15-ont-fast5-api_4.1.1+dfsg-4_armhf.deb ... 265s Unpacking ont-fast5-api (4.1.1+dfsg-4) ... 265s Selecting previously unselected package python3-all. 265s Preparing to unpack .../16-python3-all_3.12.6-0ubuntu1_armhf.deb ... 265s Unpacking python3-all (3.12.6-0ubuntu1) ... 265s Selecting previously unselected package autopkgtest-satdep. 265s Preparing to unpack .../17-1-autopkgtest-satdep.deb ... 265s Unpacking autopkgtest-satdep (0) ... 265s Setting up python3-all (3.12.6-0ubuntu1) ... 265s Setting up libaec0:armhf (1.1.3-1) ... 265s Setting up libvbz-hdf-plugin0t64:armhf (1.0.2-3.1build1) ... 265s Setting up python3-progressbar (2.5-4) ... 266s Setting up libblas3:armhf (3.12.0-3build2) ... 266s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 266s Setting up python3-packaging (24.2-1) ... 266s Setting up liblzf1:armhf (3.6-4) ... 266s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 266s Setting up libsz2:armhf (1.1.3-1) ... 266s Setting up liblapack3:armhf (3.12.0-3build2) ... 266s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 266s Setting up libvbz-hdf-plugin-dev:armhf (1.0.2-3.1build1) ... 266s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 269s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 269s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 269s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 269s Setting up python3-h5py (3.11.0-8ubuntu1) ... 269s Setting up ont-fast5-api (4.1.1+dfsg-4) ... 269s Setting up autopkgtest-satdep (0) ... 269s Processing triggers for man-db (2.13.0-1) ... 270s Processing triggers for libc-bin (2.40-1ubuntu3) ... 283s (Reading database ... 60782 files and directories currently installed.) 283s Removing autopkgtest-satdep (0) ... 289s autopkgtest [16:38:12]: test run-unit-test: [----------------------- 292s test_001_put_and_retrieve (test.test_alignment_tools.TestAlignmentTools.test_001_put_and_retrieve) ... ok 292s test_001_put_and_retrieve (test.test_basecall_1d_tools.TestBasecall1DTools.test_001_put_and_retrieve) ... ok 292s test_001_put_and_retrieve (test.test_basecall_2d_tools.TestBasecall2DTools.test_001_put_and_retrieve) ... ok 292s test_check_multi_read (test.test_check_compression.TestCheckCompression.test_check_multi_read) ... ok 292s test_check_read_compression_multi_read (test.test_check_compression.TestCheckCompression.test_check_read_compression_multi_read) ... ok 292s test_check_read_compression_single_read (test.test_check_compression.TestCheckCompression.test_check_read_compression_single_read) ... ok 292s test_check_read_compression_vbz (test.test_check_compression.TestCheckCompression.test_check_read_compression_vbz) ... ok 292s test_check_single_read_folder (test.test_check_compression.TestCheckCompression.test_check_single_read_folder) ... ok 292s test_multi_to_multi (test.test_compress_fast5.TestSanitise.test_multi_to_multi) ... ok 292s test_single_to_multi (test.test_compress_fast5.TestSanitise.test_single_to_multi) ... ok 292s test_add_read_from_multi (test.test_compress_fast5.TestVbzConvert.test_add_read_from_multi) ... ok 292s test_compress_in_place (test.test_compress_fast5.TestVbzConvert.test_compress_in_place) ... skipped 'Permission Denied - to open folder' 292s test_compress_read_from_single (test.test_compress_fast5.TestVbzConvert.test_compress_read_from_single) ... ok 292s test_conversion_script_multi (test.test_compress_fast5.TestVbzConvert.test_conversion_script_multi) ... skipped 'Permission Denied - to open folder' 292s test_conversion_script_multi_retains_end_reason_enumeration (test.test_compress_fast5.TestVbzConvert.test_conversion_script_multi_retains_end_reason_enumeration) 292s Test that given a collection of multi read fast5 files that undergo compression ... ok 292s test_conversion_script_single (test.test_compress_fast5.TestVbzConvert.test_conversion_script_single) ... skipped 'Permission Denied - to open folder' 292s test_conversion_script_single_retains_end_reason_enumeration (test.test_compress_fast5.TestVbzConvert.test_conversion_script_single_retains_end_reason_enumeration) 292s Test that given a collection of single read fast5 files that undergo compression ... ok 292s test_read_vbz_using_api (test.test_compress_fast5.TestVbzReadWrite.test_read_vbz_using_api) ... ok 292s test_write_vbz_directly (test.test_compress_fast5.TestVbzReadWrite.test_write_vbz_directly) ... skipped 'Tries to create dataset - permission denied' 292s test_write_vbz_using_api (test.test_compress_fast5.TestVbzReadWrite.test_write_vbz_using_api) ... ok 292s test_write_vbz_using_api_single_read (test.test_compress_fast5.TestVbzReadWrite.test_write_vbz_using_api_single_read) ... ok 292s test_register_plugin_no_prepend (test.test_compression_settings.TestCheckCompression.test_register_plugin_no_prepend) ... ok 292s test__clean (test.test_data_sanitisation.TestDataSanitisation.test__clean) ... ok 292s test__sanitize_data (test.test_data_sanitisation.TestDataSanitisation.test__sanitize_data) ... ok 292s test__sanitize_data_emptystrings (test.test_data_sanitisation.TestDataSanitisation.test__sanitize_data_emptystrings) ... ok 292s test_real_example_file (test.test_data_sanitisation.TestDataSanitisation.test_real_example_file) ... ok 292s test_sanitise_array_empty_string (test.test_data_sanitisation.TestDataSanitisation.test_sanitise_array_empty_string) ... ok 292s test_demux_1t (test.test_demux_fast5.TestDemuxFast5.test_demux_1t) ... ok 294s test_demux_8t (test.test_demux_fast5.TestDemuxFast5.test_demux_8t) ... ok 294s test_parse_summary (test.test_demux_fast5.TestDemuxFast5.test_parse_summary) ... ok 294s test_001_read_events (test.test_event_detection_tools.TestEventDetectionTools.test_001_read_events) ... ok 294s test_002_write_events (test.test_event_detection_tools.TestEventDetectionTools.test_002_write_events) ... ok 294s test_yield_fast5_files_from_dir (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_files_from_dir) ... ok 294s test_yield_fast5_files_from_fast5_file (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_files_from_fast5_file) ... ok 294s test_yield_fast5_reads_from_dir (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_from_dir) ... ok 294s test_yield_fast5_reads_from_fast5_file (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_from_fast5_file) ... ok 294s test_yield_fast5_reads_set_versus_list_equality (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_set_versus_list_equality) ... ok 294s test_yield_fast5_reads_type_error (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_type_error) ... ok 294s test_yield_fast5_reads_with_empty_set (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_with_empty_set) ... ok 294s test_yield_fast5_reads_with_garbage_set (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_with_garbage_set) ... ok 294s test_yield_fast5_reads_with_list (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_with_list) ... ok 294s test_yield_fast5_reads_with_set (test.test_fast5_conversion_utils.TestFast5ConversionUtilities.test_yield_fast5_reads_with_set) ... ok 294s test_add_read_to_multi (test.test_fast5_converter.TestFast5Converter.test_add_read_to_multi) ... ok 294s test_multi_to_single (test.test_fast5_converter.TestFast5Converter.test_multi_to_single) ... ok 294s test_multi_to_single_incorrect_types (test.test_fast5_converter.TestFast5Converter.test_multi_to_single_incorrect_types) ... ok 294s test_single_to_multi (test.test_fast5_converter.TestFast5Converter.test_single_to_multi) ... skipped 'Permission Denied - to open folder' 294s test_single_to_multi_incorrect_types (test.test_fast5_converter.TestFast5Converter.test_single_to_multi_incorrect_types) ... ok 294s test_001_get_latest_analysis (test.test_fast5_file.TestFast5File.test_001_get_latest_analysis) ... ok 294s test_002_add_analysis_group (test.test_fast5_file.TestFast5File.test_002_add_analysis_group) ... ok 294s test_002_read_summary_data (test.test_fast5_file.TestFast5File.test_002_read_summary_data) ... ok 294s test_003_add_analysis_subgroup (test.test_fast5_file.TestFast5File.test_003_add_analysis_subgroup) ... ok 294s test_010_v0_6_single (test.test_fast5_file.TestFast5File.test_010_v0_6_single) ... ok 294s test_011_v0_6_raw (test.test_fast5_file.TestFast5File.test_011_v0_6_raw) ... ok 294s test_012_v1_0_single (test.test_fast5_file.TestFast5File.test_012_v1_0_single) ... ok 294s test_fast5_add_analysis_dataset (test.test_fast5_file.TestFast5File.test_fast5_add_analysis_dataset) ... ok 294s test_fast5_add_and_get_chain (test.test_fast5_file.TestFast5File.test_fast5_add_and_get_chain) ... ok 294s test_fast5_add_group (test.test_fast5_file.TestFast5File.test_fast5_add_group) ... ok 294s test_fast5_set_analysis_config (test.test_fast5_file.TestFast5File.test_fast5_set_analysis_config) ... ok 294s test_correct_type (test.test_fast5_interface.TestFast5Interface.test_correct_type) ... ok 294s test_extract_selected_reads (test.test_fast5_subset.TestFast5Subset.test_extract_selected_reads) ... ok 294s test_read_generator (test.test_fast5_subset.TestFast5Subset.test_read_generator) ... ok 294s test_selector_args_generator (test.test_fast5_subset.TestFast5Subset.test_selector_args_generator) ... ok 294s test_subset_from_multi (test.test_fast5_subset.TestFast5Subset.test_subset_from_multi) ... ok 294s test_subset_from_single (test.test_fast5_subset.TestFast5Subset.test_subset_from_single) ... ok 294s test_create_read (test.test_hardlink_metadata.TestHardlinkMetaData.test_create_read) ... ok 294s test_hardlink_multi_compression (test.test_hardlink_metadata.TestHardlinkMetaData.test_hardlink_multi_compression) ... ok 294s test_hardlink_single_to_multi (test.test_hardlink_metadata.TestHardlinkMetaData.test_hardlink_single_to_multi) ... ok 294s test_hardlink_subset (test.test_hardlink_metadata.TestHardlinkMetaData.test_hardlink_subset) ... ok 294s test_hardlink_subset_single_reads (test.test_hardlink_metadata.TestHardlinkMetaData.test_hardlink_subset_single_reads) ... ok 294s test_add_analysis (test.test_multi_fast5.TestMultiFast5.test_add_analysis) ... ok 294s test_channel_info (test.test_multi_fast5.TestMultiFast5.test_channel_info) ... ok 294s test_raw_data (test.test_multi_fast5.TestMultiFast5.test_raw_data) ... ok 294s test_read_interface (test.test_multi_fast5.TestMultiFast5.test_read_interface) ... ok 294s test_tracking_id (test.test_multi_fast5.TestMultiFast5.test_tracking_id) ... ok 294s test_001_raw_only (test.test_segmentation_tools.TestSegmentationTools.test_001_raw_only) ... ok 294s test_002_events_only (test.test_segmentation_tools.TestSegmentationTools.test_002_events_only) ... ok 294s 294s ---------------------------------------------------------------------- 294s Ran 76 tests in 2.297s 294s 294s OK (skipped=5) 295s autopkgtest [16:38:18]: test run-unit-test: -----------------------] 299s run-unit-test PASS 299s autopkgtest [16:38:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 303s autopkgtest [16:38:26]: @@@@@@@@@@@@@@@@@@@@ summary 303s run-unit-test PASS