0s autopkgtest [18:39:27]: starting date and time: 2024-11-13 18:39:27+0000 0s autopkgtest [18:39:27]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [18:39:27]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.25ztrokk/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade ont-fast5-api --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.142 lxd-armhf-10.145.243.142:autopkgtest/ubuntu/plucky/armhf 53s autopkgtest [18:40:20]: testbed dpkg architecture: armhf 55s autopkgtest [18:40:22]: testbed apt version: 2.9.8 55s autopkgtest [18:40:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 64s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [971 kB] 64s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 64s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 64s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [106 kB] 64s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [647 kB] 64s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 64s Fetched 1943 kB in 1s (1848 kB/s) 64s Reading package lists... 83s tee: /proc/self/fd/2: Permission denied 106s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 106s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 106s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 106s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 108s Reading package lists... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s Calculating upgrade... 110s The following packages were automatically installed and are no longer required: 110s libperl5.38t64 perl-modules-5.38 python3-netifaces 110s Use 'apt autoremove' to remove them. 110s The following NEW packages will be installed: 110s libperl5.40 perl-modules-5.40 python3.13-gdbm systemd-cryptsetup 110s The following packages will be upgraded: 110s apport apport-core-dump-handler base-files base-passwd bash-completion 110s dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info 110s install-info iproute2 libarchive13t64 libatomic1 libattr1 110s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 110s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 110s libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libdb5.3t64 110s libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 libevdev2 110s libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 libgnutls30t64 110s libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common 110s libkeyutils1 libldap-common libldap2 liblocale-gettext-perl libmaxminddb0 110s libmnl0 libnetfilter-conntrack3 libnetplan1 libnghttp2-14 libnspr4 110s libnss-systemd libnvme1t64 libpam-systemd libpipeline1 libplymouth5 110s libpng16-16t64 libpopt0 libpython3-stdlib libpython3.12-minimal 110s libpython3.12-stdlib libsgutils2-1.46-2 libssh2-1t64 libstdc++6 110s libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl 110s libtraceevent1 libtraceevent1-plugin libudev1 libudisks2-0 liburcu8t64 110s libutempter0 libuv1t64 libx11-6 libx11-data libxau6 libxmlb2 mawk 110s motd-news-config nano netplan-generator netplan.io openssh-client 110s openssh-server openssh-sftp-server pci.ids perl perl-base plymouth 110s plymouth-theme-ubuntu-text python3 python3-apport python3-certifi 110s python3-cffi-backend python3-configobj python3-gdbm python3-gi python3-idna 110s python3-jaraco.functools python3-json-pointer python3-jsonpatch 110s python3-lazr.restfulclient python3-lazr.uri python3-minimal 110s python3-more-itertools python3-netplan python3-oauthlib 110s python3-problem-report python3-typeguard python3-urllib3 python3-wadllib 110s python3-zipp python3.12 python3.12-gdbm python3.12-minimal sg3-utils 110s sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv 110s systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny xxd 110s 140 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 110s Need to get 45.4 MB of archives. 110s After this operation, 43.1 MB of additional disk space will be used. 110s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B] 110s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB] 111s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB] 111s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB] 111s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB] 111s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB] 111s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 111s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 111s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 111s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 111s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB] 111s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 111s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 111s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB] 111s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB] 111s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB] 111s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB] 111s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB] 111s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 111s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB] 111s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB] 111s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB] 111s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB] 111s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB] 111s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB] 111s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB] 111s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB] 111s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB] 111s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB] 111s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB] 111s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB] 111s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB] 111s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB] 111s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB] 111s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB] 111s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB] 111s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB] 112s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB] 112s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB] 112s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B] 112s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB] 112s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB] 112s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB] 112s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB] 112s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 112s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 112s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB] 112s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB] 112s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 112s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 112s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 112s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB] 112s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB] 112s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 112s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB] 112s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB] 112s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 112s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB] 112s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB] 112s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB] 112s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB] 112s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB] 112s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB] 112s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 112s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 112s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 112s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB] 112s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 112s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B] 112s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB] 112s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 112s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB] 112s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB] 112s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB] 112s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 112s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB] 112s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB] 112s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 112s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 112s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB] 112s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB] 112s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB] 112s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB] 112s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 112s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 112s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB] 112s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B] 112s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB] 112s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB] 112s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 112s Get:92 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 112s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB] 112s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB] 112s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB] 112s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB] 112s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB] 112s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 112s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB] 112s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 112s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 112s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 113s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB] 113s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 113s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB] 113s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB] 113s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB] 113s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B] 113s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB] 113s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B] 113s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB] 113s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB] 113s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB] 113s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB] 113s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B] 113s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB] 113s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB] 113s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 113s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 113s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 113s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB] 113s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 113s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB] 113s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB] 113s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB] 113s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 113s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B] 113s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 113s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB] 113s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB] 113s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB] 113s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 113s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB] 113s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 113s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB] 113s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 113s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB] 113s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB] 113s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB] 113s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB] 113s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 114s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 114s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB] 114s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB] 114s Preconfiguring packages ... 115s Fetched 45.4 MB in 4s (12.5 MB/s) 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 115s Preparing to unpack .../motd-news-config_13.5ubuntu3_all.deb ... 115s Unpacking motd-news-config (13.5ubuntu3) over (13.3ubuntu6) ... 115s Preparing to unpack .../base-files_13.5ubuntu3_armhf.deb ... 115s Unpacking base-files (13.5ubuntu3) over (13.3ubuntu6) ... 115s Setting up base-files (13.5ubuntu3) ... 115s Installing new version of config file /etc/issue ... 115s Installing new version of config file /etc/issue.net ... 115s Installing new version of config file /etc/lsb-release ... 116s motd-news.service is a disabled or a static unit not running, not starting it. 116s (Reading database ... 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'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 137s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 137s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 137s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 137s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 137s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 137s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied 138s Setting up systemd-sysv (256.5-2ubuntu4) ... 138s Setting up openssh-server (1:9.7p1-7ubuntu5) ... 139s Setting up plymouth (24.004.60-1ubuntu11) ... 139s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 140s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 140s Setting up libfwupd2:armhf (1.9.26-2) ... 140s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ... 140s Setting up python3 (3.12.7-1) ... 140s Setting up python3-zipp (3.21.0-1) ... 140s Setting up dpkg-dev (1.22.11ubuntu3) ... 140s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ... 140s update-initramfs: deferring update (trigger activated) 140s Setting up python3-oauthlib (3.2.2-2) ... 141s Setting up python3-configobj (5.0.9-1) ... 141s Setting up python3-certifi (2024.8.30+dfsg-1) ... 141s Setting up python3-gi (3.50.0-3) ... 141s Setting up python3-idna (3.8-2) ... 142s Setting up python3-urllib3 (2.0.7-2ubuntu0.1) ... 142s Setting up python3-json-pointer (2.4-2) ... 142s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ... 142s Setting up fwupd (1.9.26-2) ... 143s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 143s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 143s fwupd.service is a disabled or a static unit not running, not starting it. 143s Setting up python3-cffi-backend:armhf (1.17.1-2) ... 143s Setting up python3-more-itertools (10.5.0-1) ... 143s Setting up python3-jaraco.functools (4.1.0-1) ... 143s Setting up python3-gdbm:armhf (3.12.7-1) ... 143s Setting up python3-problem-report (2.30.0-0ubuntu5) ... 143s Setting up ssh-import-id (5.11-0ubuntu3) ... 143s Setting up python3-jsonpatch (1.32-4) ... 144s Setting up python3-typeguard (4.4.1-1) ... 144s Setting up ufw (0.36.2-8) ... 145s Setting up python3-lazr.uri (1.0.6-4) ... 145s Setting up python3-apport (2.30.0-0ubuntu5) ... 145s Setting up python3-wadllib (2.0.0-1) ... 146s Setting up python3-netplan (1.1.1-1) ... 146s Setting up python3-lazr.restfulclient (0.14.6-2) ... 146s Setting up netplan.io (1.1.1-1) ... 146s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ... 147s Setting up apport (2.30.0-0ubuntu5) ... 147s Installing new version of config file /etc/apport/crashdb.conf ... 147s apport-autoreport.service is a disabled or a static unit not running, not starting it. 148s Processing triggers for dbus (1.14.10-4ubuntu5) ... 148s Processing triggers for shared-mime-info (2.4-5) ... 148s Processing triggers for install-info (7.1.1-1) ... 148s Processing triggers for initramfs-tools (0.142ubuntu34) ... 148s Processing triggers for libc-bin (2.40-1ubuntu3) ... 148s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 149s Processing triggers for man-db (2.12.1-3) ... 150s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s The following packages will be REMOVED: 152s libperl5.38t64* perl-modules-5.38* python3-netifaces* 152s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 152s After this operation, 41.7 MB disk space will be freed. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61506 files and directories currently installed.) 153s Removing libperl5.38t64:armhf (5.38.2-5) ... 153s Removing perl-modules-5.38 (5.38.2-5) ... 153s Removing python3-netifaces:armhf (0.11.0-2build3) ... 153s Processing triggers for man-db (2.12.1-3) ... 153s Processing triggers for libc-bin (2.40-1ubuntu3) ... 155s autopkgtest [18:42:02]: rebooting testbed after setup commands that affected boot 226s autopkgtest [18:43:13]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 256s autopkgtest [18:43:43]: @@@@@@@@@@@@@@@@@@@@ apt-source ont-fast5-api 266s Get:1 http://ftpmaster.internal/ubuntu plucky/universe ont-fast5-api 4.1.1+dfsg-4 (dsc) [2236 B] 266s Get:2 http://ftpmaster.internal/ubuntu plucky/universe ont-fast5-api 4.1.1+dfsg-4 (tar) [1384 kB] 266s Get:3 http://ftpmaster.internal/ubuntu plucky/universe ont-fast5-api 4.1.1+dfsg-4 (diff) [4572 B] 267s gpgv: Signature made Wed Aug 28 16:17:26 2024 UTC 267s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 267s gpgv: issuer "tchet@debian.org" 267s gpgv: Can't check signature: No public key 267s dpkg-source: warning: cannot verify inline signature for ./ont-fast5-api_4.1.1+dfsg-4.dsc: no acceptable signature found 267s autopkgtest [18:43:54]: testing package ont-fast5-api version 4.1.1+dfsg-4 269s autopkgtest [18:43:56]: build not needed 271s autopkgtest [18:43:58]: test run-unit-test: preparing testbed 282s Reading package lists... 283s Building dependency tree... 283s Reading state information... 284s Starting pkgProblemResolver with broken count: 0 284s Starting 2 pkgProblemResolver with broken count: 0 284s Done 285s The following additional packages will be installed: 285s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 285s liblzf1 libpython3.13-minimal libpython3.13-stdlib libsz2 285s libvbz-hdf-plugin-dev libvbz-hdf-plugin0t64 ont-fast5-api python3-all 285s python3-h5py python3-h5py-serial python3-numpy python3-packaging 285s python3-progressbar python3.13 python3.13-minimal 285s Suggested packages: 285s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 285s python3.13-venv python3.13-doc binfmt-support 285s The following NEW packages will be installed: 286s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 286s libhdf5-hl-100t64 liblapack3 liblzf1 libpython3.13-minimal 286s libpython3.13-stdlib libsz2 libvbz-hdf-plugin-dev libvbz-hdf-plugin0t64 286s ont-fast5-api python3-all python3-h5py python3-h5py-serial python3-numpy 286s python3-packaging python3-progressbar python3.13 python3.13-minimal 286s 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. 286s Need to get 14.1 MB/14.1 MB of archives. 286s After this operation, 48.6 MB of additional disk space will be used. 286s Get:1 /tmp/autopkgtest.B7yKci/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B] 286s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 286s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 286s Get:4 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 286s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 286s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 286s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 286s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 286s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 286s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 286s Get:11 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B] 286s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 286s Get:13 http://ftpmaster.internal/ubuntu plucky/universe armhf libvbz-hdf-plugin0t64 armhf 1.0.2-3.1build1 [17.4 kB] 286s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf libvbz-hdf-plugin-dev armhf 1.0.2-3.1build1 [14.4 kB] 286s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 287s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py-serial armhf 3.11.0-5ubuntu1 [1061 kB] 287s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py all 3.11.0-5ubuntu1 [7974 B] 287s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 287s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-progressbar all 2.5-4 [11.0 kB] 287s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf ont-fast5-api armhf 4.1.1+dfsg-4 [46.5 kB] 287s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 287s Get:22 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 287s Fetched 14.1 MB in 1s (13.3 MB/s) 287s Selecting previously unselected package libpython3.13-minimal:armhf. 287s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 287s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ... 287s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 287s Selecting previously unselected package python3.13-minimal. 288s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ... 288s Unpacking python3.13-minimal (3.13.0-2) ... 288s Selecting previously unselected package libaec0:armhf. 288s Preparing to unpack .../02-libaec0_1.1.3-1_armhf.deb ... 288s Unpacking libaec0:armhf (1.1.3-1) ... 288s Selecting previously unselected package libblas3:armhf. 288s Preparing to unpack .../03-libblas3_3.12.0-3build2_armhf.deb ... 288s Unpacking libblas3:armhf (3.12.0-3build2) ... 288s Selecting previously unselected package libgfortran5:armhf. 288s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 288s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 288s Selecting previously unselected package libsz2:armhf. 288s Preparing to unpack .../05-libsz2_1.1.3-1_armhf.deb ... 288s Unpacking libsz2:armhf (1.1.3-1) ... 288s Selecting previously unselected package libhdf5-103-1t64:armhf. 288s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 288s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 288s Selecting previously unselected package libhdf5-hl-100t64:armhf. 288s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 288s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 288s Selecting previously unselected package liblapack3:armhf. 288s Preparing to unpack .../08-liblapack3_3.12.0-3build2_armhf.deb ... 288s Unpacking liblapack3:armhf (3.12.0-3build2) ... 288s Selecting previously unselected package liblzf1:armhf. 288s Preparing to unpack .../09-liblzf1_3.6-4_armhf.deb ... 288s Unpacking liblzf1:armhf (3.6-4) ... 288s Selecting previously unselected package libpython3.13-stdlib:armhf. 288s Preparing to unpack .../10-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 288s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 288s Selecting previously unselected package libvbz-hdf-plugin0t64:armhf. 288s Preparing to unpack .../11-libvbz-hdf-plugin0t64_1.0.2-3.1build1_armhf.deb ... 288s Unpacking libvbz-hdf-plugin0t64:armhf (1.0.2-3.1build1) ... 288s Selecting previously unselected package libvbz-hdf-plugin-dev:armhf. 288s Preparing to unpack .../12-libvbz-hdf-plugin-dev_1.0.2-3.1build1_armhf.deb ... 288s Unpacking libvbz-hdf-plugin-dev:armhf (1.0.2-3.1build1) ... 288s Selecting previously unselected package python3-numpy. 288s Preparing to unpack .../13-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 288s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 289s Selecting previously unselected package python3-h5py-serial. 289s Preparing to unpack .../14-python3-h5py-serial_3.11.0-5ubuntu1_armhf.deb ... 289s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ... 289s Selecting previously unselected package python3-h5py. 289s Preparing to unpack .../15-python3-h5py_3.11.0-5ubuntu1_all.deb ... 289s Unpacking python3-h5py (3.11.0-5ubuntu1) ... 289s Selecting previously unselected package python3-packaging. 289s Preparing to unpack .../16-python3-packaging_24.1-1_all.deb ... 289s Unpacking python3-packaging (24.1-1) ... 289s Selecting previously unselected package python3-progressbar. 289s Preparing to unpack .../17-python3-progressbar_2.5-4_all.deb ... 289s Unpacking python3-progressbar (2.5-4) ... 289s Selecting previously unselected package ont-fast5-api. 289s Preparing to unpack .../18-ont-fast5-api_4.1.1+dfsg-4_armhf.deb ... 289s Unpacking ont-fast5-api (4.1.1+dfsg-4) ... 289s Selecting previously unselected package python3.13. 289s Preparing to unpack .../19-python3.13_3.13.0-2_armhf.deb ... 289s Unpacking python3.13 (3.13.0-2) ... 289s Selecting previously unselected package python3-all. 289s Preparing to unpack .../20-python3-all_3.12.7-1_armhf.deb ... 289s Unpacking python3-all (3.12.7-1) ... 289s Selecting previously unselected package autopkgtest-satdep. 289s Preparing to unpack .../21-1-autopkgtest-satdep.deb ... 289s Unpacking autopkgtest-satdep (0) ... 289s Setting up libaec0:armhf (1.1.3-1) ... 289s Setting up libvbz-hdf-plugin0t64:armhf (1.0.2-3.1build1) ... 289s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 289s Setting up python3-progressbar (2.5-4) ... 290s Setting up libblas3:armhf (3.12.0-3build2) ... 290s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 290s Setting up python3-packaging (24.1-1) ... 290s Setting up liblzf1:armhf (3.6-4) ... 290s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 290s Setting up python3.13-minimal (3.13.0-2) ... 291s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... 291s Setting up libsz2:armhf (1.1.3-1) ... 291s Setting up liblapack3:armhf (3.12.0-3build2) ... 291s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 291s Setting up libvbz-hdf-plugin-dev:armhf (1.0.2-3.1build1) ... 291s Setting up python3.13 (3.13.0-2) ... 293s Setting up python3-all (3.12.7-1) ... 293s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 297s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 297s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 297s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ... 298s Setting up python3-h5py (3.11.0-5ubuntu1) ... 298s Setting up ont-fast5-api (4.1.1+dfsg-4) ... 298s Setting up autopkgtest-satdep (0) ... 298s Processing triggers for systemd (256.5-2ubuntu4) ... 298s Processing triggers for man-db (2.12.1-3) ... 299s Processing triggers for libc-bin (2.40-1ubuntu3) ... 315s (Reading database ... 61449 files and directories currently installed.) 315s Removing autopkgtest-satdep (0) ... 321s autopkgtest [18:44:48]: test run-unit-test: [----------------------- 324s test.test_alignment_tools (unittest.loader._FailedTest.test.test_alignment_tools) ... ERROR 324s test.test_basecall_1d_tools (unittest.loader._FailedTest.test.test_basecall_1d_tools) ... ERROR 324s test.test_basecall_2d_tools (unittest.loader._FailedTest.test.test_basecall_2d_tools) ... ERROR 324s test.test_check_compression (unittest.loader._FailedTest.test.test_check_compression) ... ERROR 324s test.test_compress_fast5 (unittest.loader._FailedTest.test.test_compress_fast5) ... ERROR 324s test_register_plugin_no_prepend (test.test_compression_settings.TestCheckCompression.test_register_plugin_no_prepend) ... ERROR 324s test.test_data_sanitisation (unittest.loader._FailedTest.test.test_data_sanitisation) ... ERROR 324s test.test_demux_fast5 (unittest.loader._FailedTest.test.test_demux_fast5) ... ERROR 324s test.test_event_detection_tools (unittest.loader._FailedTest.test.test_event_detection_tools) ... ERROR 324s test.test_fast5_conversion_utils (unittest.loader._FailedTest.test.test_fast5_conversion_utils) ... ERROR 324s test.test_fast5_converter (unittest.loader._FailedTest.test.test_fast5_converter) ... ERROR 324s test.test_fast5_file (unittest.loader._FailedTest.test.test_fast5_file) ... ERROR 324s test.test_fast5_interface (unittest.loader._FailedTest.test.test_fast5_interface) ... ERROR 324s test.test_fast5_subset (unittest.loader._FailedTest.test.test_fast5_subset) ... ERROR 324s test.test_hardlink_metadata (unittest.loader._FailedTest.test.test_hardlink_metadata) ... ERROR 324s test.test_multi_fast5 (unittest.loader._FailedTest.test.test_multi_fast5) ... ERROR 324s test.test_segmentation_tools (unittest.loader._FailedTest.test.test_segmentation_tools) ... ERROR 324s 324s ====================================================================== 324s ERROR: test.test_alignment_tools (unittest.loader._FailedTest.test.test_alignment_tools) 324s ---------------------------------------------------------------------- 324s ImportError: Failed to import test module: test.test_alignment_tools 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 324s from . import multiarray 324s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 324s from . import overrides 324s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 324s from numpy.core._multiarray_umath import ( 324s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 324s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 324s 324s During handling of the above exception, another exception occurred: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 324s from numpy.__config__ import show as show_config 324s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 324s from numpy.core._multiarray_umath import ( 324s ...<3 lines>... 324s ) 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 324s raise ImportError(msg) 324s ImportError: 324s 324s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 324s 324s Importing the numpy C-extensions failed. This error can happen for 324s many reasons, often due to issues with your setup or how NumPy was 324s installed. 324s 324s We have compiled some common reasons and troubleshooting tips at: 324s 324s https://numpy.org/devdocs/user/troubleshooting-importerror.html 324s 324s Please note and check the following: 324s 324s * The Python version is: Python3.13 from "/usr/bin/python3.13" 324s * The NumPy version is: "1.26.4" 324s 324s and make sure that they are the versions you expect. 324s Please carefully study the documentation linked above for further help. 324s 324s Original error was: No module named 'numpy.core._multiarray_umath' 324s 324s 324s The above exception was the direct cause of the following exception: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 324s module = self._get_module_from_name(name) 324s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 324s __import__(name) 324s ~~~~~~~~~~^^^^^^ 324s File "/tmp/autopkgtest.B7yKci/autopkgtest_tmp/test/test_alignment_tools.py", line 2, in 324s import numpy as np 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 324s raise ImportError(msg) from e 324s ImportError: Error importing numpy: you should not try to import numpy from 324s its source directory; please exit the numpy source tree, and relaunch 324s your python interpreter from there. 324s 324s 324s ====================================================================== 324s ERROR: test.test_basecall_1d_tools (unittest.loader._FailedTest.test.test_basecall_1d_tools) 324s ---------------------------------------------------------------------- 324s ImportError: Failed to import test module: test.test_basecall_1d_tools 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 324s from . import multiarray 324s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 324s from . import overrides 324s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 324s from numpy.core._multiarray_umath import ( 324s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 324s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 324s 324s During handling of the above exception, another exception occurred: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 324s from numpy.__config__ import show as show_config 324s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 324s from numpy.core._multiarray_umath import ( 324s ...<3 lines>... 324s ) 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 324s raise ImportError(msg) 324s ImportError: 324s 324s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 324s 324s Importing the numpy C-extensions failed. This error can happen for 324s many reasons, often due to issues with your setup or how NumPy was 324s installed. 324s 324s We have compiled some common reasons and troubleshooting tips at: 324s 324s https://numpy.org/devdocs/user/troubleshooting-importerror.html 324s 324s Please note and check the following: 324s 324s * The Python version is: Python3.13 from "/usr/bin/python3.13" 324s * The NumPy version is: "1.26.4" 324s 324s and make sure that they are the versions you expect. 324s Please carefully study the documentation linked above for further help. 324s 324s Original error was: No module named 'numpy.core._multiarray_umath' 324s 324s 324s The above exception was the direct cause of the following exception: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 324s module = self._get_module_from_name(name) 324s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 324s __import__(name) 324s ~~~~~~~~~~^^^^^^ 324s File "/tmp/autopkgtest.B7yKci/autopkgtest_tmp/test/test_basecall_1d_tools.py", line 1, in 324s import numpy as np 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 324s raise ImportError(msg) from e 324s ImportError: Error importing numpy: you should not try to import numpy from 324s its source directory; please exit the numpy source tree, and relaunch 324s your python interpreter from there. 324s 324s 324s ====================================================================== 324s ERROR: test.test_basecall_2d_tools (unittest.loader._FailedTest.test.test_basecall_2d_tools) 324s ---------------------------------------------------------------------- 324s ImportError: Failed to import test module: test.test_basecall_2d_tools 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 324s from . import multiarray 324s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 324s from . import overrides 324s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 324s from numpy.core._multiarray_umath import ( 324s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 324s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 324s 324s During handling of the above exception, another exception occurred: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 324s from numpy.__config__ import show as show_config 324s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 324s from numpy.core._multiarray_umath import ( 324s ...<3 lines>... 324s ) 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 324s raise ImportError(msg) 324s ImportError: 324s 324s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 324s 324s Importing the numpy C-extensions failed. This error can happen for 324s many reasons, often due to issues with your setup or how NumPy was 324s installed. 324s 324s We have compiled some common reasons and troubleshooting tips at: 324s 324s https://numpy.org/devdocs/user/troubleshooting-importerror.html 324s 324s Please note and check the following: 324s 324s * The Python version is: Python3.13 from "/usr/bin/python3.13" 324s * The NumPy version is: "1.26.4" 324s 324s and make sure that they are the versions you expect. 324s Please carefully study the documentation linked above for further help. 324s 324s Original error was: No module named 'numpy.core._multiarray_umath' 324s 324s 324s The above exception was the direct cause of the following exception: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 324s module = self._get_module_from_name(name) 324s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 324s __import__(name) 324s ~~~~~~~~~~^^^^^^ 324s File "/tmp/autopkgtest.B7yKci/autopkgtest_tmp/test/test_basecall_2d_tools.py", line 1, in 324s import numpy as np 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 324s raise ImportError(msg) from e 324s ImportError: Error importing numpy: you should not try to import numpy from 324s its source directory; please exit the numpy source tree, and relaunch 324s your python interpreter from there. 324s 324s 324s ====================================================================== 324s ERROR: test.test_check_compression (unittest.loader._FailedTest.test.test_check_compression) 324s ---------------------------------------------------------------------- 324s ImportError: Failed to import test module: test.test_check_compression 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 324s from . import multiarray 324s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 324s from . import overrides 324s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 324s from numpy.core._multiarray_umath import ( 324s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 324s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 324s 324s During handling of the above exception, another exception occurred: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 324s from numpy.__config__ import show as show_config 324s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 324s from numpy.core._multiarray_umath import ( 324s ...<3 lines>... 324s ) 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 324s raise ImportError(msg) 324s ImportError: 324s 324s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 324s 324s Importing the numpy C-extensions failed. This error can happen for 324s many reasons, often due to issues with your setup or how NumPy was 324s installed. 324s 324s We have compiled some common reasons and troubleshooting tips at: 324s 324s https://numpy.org/devdocs/user/troubleshooting-importerror.html 324s 324s Please note and check the following: 324s 324s * The Python version is: Python3.13 from "/usr/bin/python3.13" 324s * The NumPy version is: "1.26.4" 324s 324s and make sure that they are the versions you expect. 324s Please carefully study the documentation linked above for further help. 324s 324s Original error was: No module named 'numpy.core._multiarray_umath' 324s 324s 324s The above exception was the direct cause of the following exception: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 324s module = self._get_module_from_name(name) 324s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 324s __import__(name) 324s ~~~~~~~~~~^^^^^^ 324s File "/tmp/autopkgtest.B7yKci/autopkgtest_tmp/test/test_check_compression.py", line 4, in 324s import numpy 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 324s raise ImportError(msg) from e 324s ImportError: Error importing numpy: you should not try to import numpy from 324s its source directory; please exit the numpy source tree, and relaunch 324s your python interpreter from there. 324s 324s 324s ====================================================================== 324s ERROR: test.test_compress_fast5 (unittest.loader._FailedTest.test.test_compress_fast5) 324s ---------------------------------------------------------------------- 324s ImportError: Failed to import test module: test.test_compress_fast5 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 324s from . import _debian_h5py_serial as _h5py 324s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 324s from . import _errors 324s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 324s 324s During handling of the above exception, another exception occurred: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 324s module = self._get_module_from_name(name) 324s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 324s __import__(name) 324s ~~~~~~~~~~^^^^^^ 324s File "/tmp/autopkgtest.B7yKci/autopkgtest_tmp/test/test_compress_fast5.py", line 1, in 324s import h5py 324s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 324s from . import _debian_h5py_mpi as _h5py 324s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 324s 324s 324s ====================================================================== 324s ERROR: test_register_plugin_no_prepend (test.test_compression_settings.TestCheckCompression.test_register_plugin_no_prepend) 324s ---------------------------------------------------------------------- 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 324s from . import _debian_h5py_serial as _h5py 324s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 324s from . import _errors 324s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 324s 324s During handling of the above exception, another exception occurred: 324s 324s Traceback (most recent call last): 324s File "/tmp/autopkgtest.B7yKci/autopkgtest_tmp/test/test_compression_settings.py", line 11, in test_register_plugin_no_prepend 324s with patch('h5py.h5pl', create=True) as mock: 324s ~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^ 324s File "/usr/lib/python3.13/unittest/mock.py", line 1475, in __enter__ 324s self.target = self.getter() 324s ~~~~~~~~~~~^^ 324s File "/usr/lib/python3.13/pkgutil.py", line 513, in resolve_name 324s mod = importlib.import_module(modname) 324s File "/usr/lib/python3.13/importlib/__init__.py", line 88, in import_module 324s return _bootstrap._gcd_import(name[level:], package, level) 324s ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 324s File "", line 1387, in _gcd_import 324s File "", line 1360, in _find_and_load 324s File "", line 1331, in _find_and_load_unlocked 324s File "", line 935, in _load_unlocked 324s File "", line 1022, in exec_module 324s File "", line 488, in _call_with_frames_removed 324s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 324s from . import _debian_h5py_mpi as _h5py 324s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 324s 324s ====================================================================== 324s ERROR: test.test_data_sanitisation (unittest.loader._FailedTest.test.test_data_sanitisation) 324s ---------------------------------------------------------------------- 324s ImportError: Failed to import test module: test.test_data_sanitisation 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 324s from . import multiarray 324s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 324s from . import overrides 324s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 324s from numpy.core._multiarray_umath import ( 324s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 324s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 324s 324s During handling of the above exception, another exception occurred: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 324s from numpy.__config__ import show as show_config 324s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 324s from numpy.core._multiarray_umath import ( 324s ...<3 lines>... 324s ) 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 324s raise ImportError(msg) 324s ImportError: 324s 324s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 324s 324s Importing the numpy C-extensions failed. This error can happen for 324s many reasons, often due to issues with your setup or how NumPy was 324s installed. 324s 324s We have compiled some common reasons and troubleshooting tips at: 324s 324s https://numpy.org/devdocs/user/troubleshooting-importerror.html 324s 324s Please note and check the following: 324s 324s * The Python version is: Python3.13 from "/usr/bin/python3.13" 324s * The NumPy version is: "1.26.4" 324s 324s and make sure that they are the versions you expect. 324s Please carefully study the documentation linked above for further help. 324s 324s Original error was: No module named 'numpy.core._multiarray_umath' 324s 324s 324s The above exception was the direct cause of the following exception: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 324s module = self._get_module_from_name(name) 324s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 324s __import__(name) 324s ~~~~~~~~~~^^^^^^ 324s File "/tmp/autopkgtest.B7yKci/autopkgtest_tmp/test/test_data_sanitisation.py", line 1, in 324s import numpy as np 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 324s raise ImportError(msg) from e 324s ImportError: Error importing numpy: you should not try to import numpy from 324s its source directory; please exit the numpy source tree, and relaunch 324s your python interpreter from there. 324s 324s 324s ====================================================================== 324s ERROR: test.test_demux_fast5 (unittest.loader._FailedTest.test.test_demux_fast5) 324s ---------------------------------------------------------------------- 324s ImportError: Failed to import test module: test.test_demux_fast5 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 324s from . import _debian_h5py_serial as _h5py 324s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 324s from . import _errors 324s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 324s 324s During handling of the above exception, another exception occurred: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 324s module = self._get_module_from_name(name) 324s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 324s __import__(name) 324s ~~~~~~~~~~^^^^^^ 324s File "/tmp/autopkgtest.B7yKci/autopkgtest_tmp/test/test_demux_fast5.py", line 4, in 324s from ont_fast5_api.conversion_tools.demux_fast5 import Fast5Demux 324s File "/usr/lib/python3/dist-packages/ont_fast5_api/conversion_tools/demux_fast5.py", line 16, in 324s from ont_fast5_api.conversion_tools.conversion_utils import ( 324s ...<6 lines>... 324s ) 324s File "/usr/lib/python3/dist-packages/ont_fast5_api/conversion_tools/conversion_utils.py", line 12, in 324s from ont_fast5_api.fast5_interface import get_fast5_file 324s File "/usr/lib/python3/dist-packages/ont_fast5_api/fast5_interface.py", line 2, in 324s from ont_fast5_api.fast5_file import Fast5File, Fast5FileTypeError 324s File "/usr/lib/python3/dist-packages/ont_fast5_api/fast5_file.py", line 4, in 324s import h5py 324s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 324s from . import _debian_h5py_mpi as _h5py 324s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 324s 324s 324s ====================================================================== 324s ERROR: test.test_event_detection_tools (unittest.loader._FailedTest.test.test_event_detection_tools) 324s ---------------------------------------------------------------------- 324s ImportError: Failed to import test module: test.test_event_detection_tools 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 324s from . import multiarray 324s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 324s from . import overrides 324s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 324s from numpy.core._multiarray_umath import ( 324s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 324s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 324s 324s During handling of the above exception, another exception occurred: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 324s from numpy.__config__ import show as show_config 324s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 324s from numpy.core._multiarray_umath import ( 324s ...<3 lines>... 324s ) 324s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 324s raise ImportError(msg) 324s ImportError: 324s 324s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 324s 324s Importing the numpy C-extensions failed. This error can happen for 324s many reasons, often due to issues with your setup or how NumPy was 324s installed. 324s 324s We have compiled some common reasons and troubleshooting tips at: 324s 324s https://numpy.org/devdocs/user/troubleshooting-importerror.html 324s 324s Please note and check the following: 324s 324s * The Python version is: Python3.13 from "/usr/bin/python3.13" 324s * The NumPy version is: "1.26.4" 324s 324s and make sure that they are the versions you expect. 324s Please carefully study the documentation linked above for further help. 324s 324s Original error was: No module named 'numpy.core._multiarray_umath' 324s 324s 324s The above exception was the direct cause of the following exception: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 324s module = self._get_module_from_name(name) 324s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 324s __import__(name) 324s ~~~~~~~~~~^^^^^^ 324s File "/tmp/autopkgtest.B7yKci/autopkgtest_tmp/test/test_event_detection_tools.py", line 2, in 324s import numpy as np 324s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 324s raise ImportError(msg) from e 324s ImportError: Error importing numpy: you should not try to import numpy from 324s its source directory; please exit the numpy source tree, and relaunch 324s your python interpreter from there. 324s 324s 324s ====================================================================== 324s ERROR: test.test_fast5_conversion_utils (unittest.loader._FailedTest.test.test_fast5_conversion_utils) 324s ---------------------------------------------------------------------- 324s ImportError: Failed to import test module: test.test_fast5_conversion_utils 324s Traceback (most recent call last): 324s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 24, in 324s from . import _debian_h5py_serial as _h5py 324s File "/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py", line 25, in 324s from . import _errors 324s ImportError: cannot import name '_errors' from partially initialized module 'h5py._debian_h5py_serial' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/_debian_h5py_serial/__init__.py) 324s 324s During handling of the above exception, another exception occurred: 324s 324s Traceback (most recent call last): 324s File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path 324s module = self._get_module_from_name(name) 324s File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name 324s __import__(name) 324s ~~~~~~~~~~^^^^^^ 324s File "/tmp/autopkgtest.B7yKci/autopkgtest_tmp/test/test_fast5_conversion_utils.py", line 2, in 324s from ont_fast5_api.fast5_read import Fast5Read 324s File "/usr/lib/python3/dist-packages/ont_fast5_api/fast5_read.py", line 4, in 324s import h5py 324s File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in 324s from . import _debian_h5py_mpi as _h5py 324s ImportError: cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py) 324s 324s 324s autopkgtest [18:44:51]: test run-unit-test: -----------------------] 329s autopkgtest [18:44:56]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 329s run-unit-test FAIL non-zero exit status 1 333s autopkgtest [18:45:00]: @@@@@@@@@@@@@@@@@@@@ summary 333s run-unit-test FAIL non-zero exit status 1