0s autopkgtest [18:30:42]: starting date and time: 2024-11-13 18:30:42+0000 0s autopkgtest [18:30:42]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [18:30:42]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fzrgbpe7/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade nipy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.76 lxd-armhf-10.145.243.76:autopkgtest/ubuntu/plucky/armhf 54s autopkgtest [18:31:36]: testbed dpkg architecture: armhf 56s autopkgtest [18:31:38]: testbed apt version: 2.9.8 56s autopkgtest [18:31:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 65s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 65s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [971 kB] 65s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 65s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 65s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [106 kB] 65s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [647 kB] 65s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 66s Fetched 1943 kB in 1s (1993 kB/s) 67s Reading package lists... 84s tee: /proc/self/fd/2: Permission denied 106s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 106s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 106s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 106s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 107s Reading package lists... 107s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Calculating upgrade... 109s The following NEW packages will be installed: 109s python3.13-gdbm 109s The following packages will be upgraded: 109s libgnutls30t64 libjson-glib-1.0-0 libjson-glib-1.0-common libpython3-stdlib 109s libutempter0 python3 python3-gdbm python3-minimal 109s 8 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 1131 kB of archives. 109s After this operation, 95.2 kB of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 109s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 109s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 109s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 110s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 110s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 110s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 110s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 110s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 110s Fetched 1131 kB in 1s (1983 kB/s) 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 110s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 110s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Setting up python3-minimal (3.12.7-1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 110s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 110s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 110s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 110s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_armhf.deb ... 110s Unpacking libgnutls30t64:armhf (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 110s Setting up libgnutls30t64:armhf (3.8.8-2ubuntu1) ... 110s Selecting previously unselected package python3.13-gdbm. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 111s Preparing to unpack .../python3.13-gdbm_3.13.0-2_armhf.deb ... 111s Unpacking python3.13-gdbm (3.13.0-2) ... 111s Preparing to unpack .../python3-gdbm_3.12.7-1_armhf.deb ... 111s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 111s Preparing to unpack .../libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 111s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 111s Preparing to unpack .../libjson-glib-1.0-0_1.10.0+ds-3_armhf.deb ... 111s Unpacking libjson-glib-1.0-0:armhf (1.10.0+ds-3) over (1.10.0+ds-2) ... 111s Preparing to unpack .../libutempter0_1.2.1-4_armhf.deb ... 111s Unpacking libutempter0:armhf (1.2.1-4) over (1.2.1-3build1) ... 111s Setting up libutempter0:armhf (1.2.1-4) ... 111s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 111s Setting up python3.13-gdbm (3.13.0-2) ... 111s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 111s Setting up python3 (3.12.7-1) ... 111s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 111s Setting up python3-gdbm:armhf (3.12.7-1) ... 111s Processing triggers for man-db (2.12.1-3) ... 112s Processing triggers for libc-bin (2.40-1ubuntu3) ... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s autopkgtest [18:32:37]: rebooting testbed after setup commands that affected boot 185s autopkgtest [18:33:47]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 214s autopkgtest [18:34:16]: @@@@@@@@@@@@@@@@@@@@ apt-source nipy 234s Get:1 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1 (dsc) [2510 B] 234s Get:2 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1 (tar) [1653 kB] 234s Get:3 http://ftpmaster.internal/ubuntu plucky/universe nipy 0.6.1-1 (diff) [12.4 kB] 234s gpgv: Signature made Sun Oct 20 16:12:46 2024 UTC 234s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 234s gpgv: issuer "tchet@debian.org" 234s gpgv: Can't check signature: No public key 234s dpkg-source: warning: cannot verify inline signature for ./nipy_0.6.1-1.dsc: no acceptable signature found 234s autopkgtest [18:34:36]: testing package nipy version 0.6.1-1 236s autopkgtest [18:34:38]: build not needed 239s autopkgtest [18:34:41]: test command1: preparing testbed 249s Reading package lists... 249s Building dependency tree... 249s Reading state information... 250s Starting pkgProblemResolver with broken count: 0 250s Starting 2 pkgProblemResolver with broken count: 0 250s Done 251s The following additional packages will be installed: 251s fonts-mathjax libblas3 libgfortran5 libjs-jquery libjs-mathjax 251s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 python-nipy-doc 251s python3-decorator python3-iniconfig python3-mpmath python3-nibabel 251s python3-nipy python3-nipy-lib python3-numpy python3-packaging python3-pluggy 251s python3-pytest python3-scipy python3-sympy python3-transforms3d 251s Suggested packages: 251s fonts-mathjax-extras fonts-stix libjs-mathjax-doc python-mpmath-doc 251s python3-gmpy2 python3-matplotlib python-nibabel-doc python3-mvpa gcc 251s gfortran python-numpy-doc python3-dev python-scipy-doc texlive-fonts-extra 251s dvipng python-sympy-doc 251s Recommended packages: 251s javascript-common python3-pydicom python3-fuse python3-matplotlib mayavi2 251s g++ | c++-compiler python3-pil isympy-common 251s The following NEW packages will be installed: 251s autopkgtest-satdep fonts-mathjax libblas3 libgfortran5 libjs-jquery 251s libjs-mathjax libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 251s python-nipy-doc python3-decorator python3-iniconfig python3-mpmath 251s python3-nibabel python3-nipy python3-nipy-lib python3-numpy 251s python3-packaging python3-pluggy python3-pytest python3-scipy python3-sympy 251s python3-transforms3d 251s 0 upgraded, 24 newly installed, 0 to remove and 0 not upgraded. 251s Need to get 43.3 MB/43.3 MB of archives. 251s After this operation, 185 MB of additional disk space will be used. 251s Get:1 /tmp/autopkgtest.NNFFmP/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [728 B] 251s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 251s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 251s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 251s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 251s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 251s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-sphinxdoc all 7.4.7-4 [158 kB] 251s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 252s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 252s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 252s Get:11 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 252s Get:12 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 252s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 252s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 252s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 252s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-nibabel all 5.2.1-2 [2696 kB] 252s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB] 252s Get:18 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-transforms3d all 0.4.2+ds-1 [1359 kB] 252s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-nipy-lib armhf 0.6.1-1 [595 kB] 252s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-nipy all 0.6.1-1 [727 kB] 252s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 252s Get:22 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB] 252s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 253s Get:24 http://ftpmaster.internal/ubuntu plucky/universe armhf python-nipy-doc all 0.6.1-1 [1970 kB] 253s Fetched 43.3 MB in 2s (22.1 MB/s) 253s Selecting previously unselected package fonts-mathjax. 253s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 253s Preparing to unpack .../00-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 253s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 253s Selecting previously unselected package libblas3:armhf. 253s Preparing to unpack .../01-libblas3_3.12.0-3build2_armhf.deb ... 253s Unpacking libblas3:armhf (3.12.0-3build2) ... 253s Selecting previously unselected package libgfortran5:armhf. 253s Preparing to unpack .../02-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 253s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 253s Selecting previously unselected package libjs-jquery. 253s Preparing to unpack .../03-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 253s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 253s Selecting previously unselected package libjs-underscore. 253s Preparing to unpack .../04-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 253s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 253s Selecting previously unselected package libjs-sphinxdoc. 253s Preparing to unpack .../05-libjs-sphinxdoc_7.4.7-4_all.deb ... 253s Unpacking libjs-sphinxdoc (7.4.7-4) ... 253s Selecting previously unselected package liblapack3:armhf. 253s Preparing to unpack .../06-liblapack3_3.12.0-3build2_armhf.deb ... 253s Unpacking liblapack3:armhf (3.12.0-3build2) ... 254s Selecting previously unselected package liblbfgsb0:armhf. 254s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 254s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 254s Selecting previously unselected package python3-decorator. 254s Preparing to unpack .../08-python3-decorator_5.1.1-5_all.deb ... 254s Unpacking python3-decorator (5.1.1-5) ... 254s Selecting previously unselected package python3-iniconfig. 254s Preparing to unpack .../09-python3-iniconfig_1.1.1-2_all.deb ... 254s Unpacking python3-iniconfig (1.1.1-2) ... 254s Selecting previously unselected package python3-mpmath. 254s Preparing to unpack .../10-python3-mpmath_1.3.0-1_all.deb ... 254s Unpacking python3-mpmath (1.3.0-1) ... 254s Selecting previously unselected package python3-numpy. 254s Preparing to unpack .../11-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 254s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 254s Selecting previously unselected package python3-packaging. 254s Preparing to unpack .../12-python3-packaging_24.1-1_all.deb ... 254s Unpacking python3-packaging (24.1-1) ... 254s Selecting previously unselected package python3-scipy. 254s Preparing to unpack .../13-python3-scipy_1.13.1-5_armhf.deb ... 254s Unpacking python3-scipy (1.13.1-5) ... 255s Selecting previously unselected package python3-nibabel. 255s Preparing to unpack .../14-python3-nibabel_5.2.1-2_all.deb ... 255s Unpacking python3-nibabel (5.2.1-2) ... 255s Selecting previously unselected package python3-sympy. 255s Preparing to unpack .../15-python3-sympy_1.13.3-1_all.deb ... 255s Unpacking python3-sympy (1.13.3-1) ... 255s Selecting previously unselected package python3-transforms3d. 255s Preparing to unpack .../16-python3-transforms3d_0.4.2+ds-1_all.deb ... 255s Unpacking python3-transforms3d (0.4.2+ds-1) ... 255s Selecting previously unselected package python3-nipy-lib:armhf. 255s Preparing to unpack .../17-python3-nipy-lib_0.6.1-1_armhf.deb ... 255s Unpacking python3-nipy-lib:armhf (0.6.1-1) ... 255s Selecting previously unselected package python3-nipy. 255s Preparing to unpack .../18-python3-nipy_0.6.1-1_all.deb ... 255s Unpacking python3-nipy (0.6.1-1) ... 255s Selecting previously unselected package python3-pluggy. 255s Preparing to unpack .../19-python3-pluggy_1.5.0-1_all.deb ... 255s Unpacking python3-pluggy (1.5.0-1) ... 255s Selecting previously unselected package python3-pytest. 255s Preparing to unpack .../20-python3-pytest_8.3.3-1_all.deb ... 255s Unpacking python3-pytest (8.3.3-1) ... 255s Selecting previously unselected package libjs-mathjax. 255s Preparing to unpack .../21-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 255s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 256s Selecting previously unselected package python-nipy-doc. 256s Preparing to unpack .../22-python-nipy-doc_0.6.1-1_all.deb ... 256s Unpacking python-nipy-doc (0.6.1-1) ... 256s Selecting previously unselected package autopkgtest-satdep. 256s Preparing to unpack .../23-1-autopkgtest-satdep.deb ... 256s Unpacking autopkgtest-satdep (0) ... 256s Setting up python3-iniconfig (1.1.1-2) ... 256s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 256s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 256s Setting up python3-decorator (5.1.1-5) ... 256s Setting up libblas3:armhf (3.12.0-3build2) ... 256s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 256s Setting up python3-packaging (24.1-1) ... 257s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 257s Setting up python3-pluggy (1.5.0-1) ... 257s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 257s Setting up python3-mpmath (1.3.0-1) ... 257s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 257s Setting up python3-sympy (1.13.3-1) ... 265s Setting up liblapack3:armhf (3.12.0-3build2) ... 265s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 265s Setting up python3-pytest (8.3.3-1) ... 265s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 267s Setting up libjs-sphinxdoc (7.4.7-4) ... 267s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 267s Setting up python3-transforms3d (0.4.2+ds-1) ... 268s Setting up python3-scipy (1.13.1-5) ... 272s Setting up python-nipy-doc (0.6.1-1) ... 272s Setting up python3-nibabel (5.2.1-2) ... 272s Setting up python3-nipy-lib:armhf (0.6.1-1) ... 272s Setting up python3-nipy (0.6.1-1) ... 273s Setting up autopkgtest-satdep (0) ... 273s Processing triggers for man-db (2.12.1-3) ... 273s Processing triggers for libc-bin (2.40-1ubuntu3) ... 291s (Reading database ... 69981 files and directories currently installed.) 291s Removing autopkgtest-satdep (0) ... 297s autopkgtest [18:35:39]: test command1: cd debian/tests && python3 -m pytest nipy_test.py 297s autopkgtest [18:35:39]: test command1: [----------------------- 300s ============================= test session starts ============================== 300s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 300s rootdir: /tmp/autopkgtest.NNFFmP/build.6kr/src 300s configfile: pyproject.toml 300s plugins: typeguard-4.4.1 300s collected 4 items 300s 300s nipy_test.py .... [100%] 300s 300s =============================== warnings summary =============================== 300s debian/tests/nipy_test.py::test_image_save_to_file 300s /usr/lib/python3/dist-packages/nipy/io/files.py:141: FutureWarning: Default `strict` currently False; this will change to True in a future version of nipy 300s ni_img = nipy2nifti(img, data_dtype = io_dtype) 300s 300s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 300s ========================= 4 passed, 1 warning in 0.26s ========================= 300s autopkgtest [18:35:42]: test command1: -----------------------] 305s autopkgtest [18:35:47]: test command1: - - - - - - - - - - results - - - - - - - - - - 305s command1 PASS 309s autopkgtest [18:35:51]: test autodep8-python3: preparing testbed 364s autopkgtest [18:36:46]: testbed dpkg architecture: armhf 366s autopkgtest [18:36:48]: testbed apt version: 2.9.8 366s autopkgtest [18:36:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 374s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 374s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB] 374s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 374s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [971 kB] 374s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB] 374s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [106 kB] 374s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [647 kB] 374s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB] 374s Fetched 1943 kB in 1s (2134 kB/s) 375s Reading package lists... 391s tee: /proc/self/fd/2: Permission denied 413s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 413s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 413s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 413s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 414s Reading package lists... 415s Reading package lists... 415s Building dependency tree... 415s Reading state information... 415s Calculating upgrade... 417s The following NEW packages will be installed: 417s python3.13-gdbm 417s The following packages will be upgraded: 417s libgnutls30t64 libjson-glib-1.0-0 libjson-glib-1.0-common libpython3-stdlib 417s libutempter0 python3 python3-gdbm python3-minimal 417s 8 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 417s Need to get 1131 kB of archives. 417s After this operation, 95.2 kB of additional disk space will be used. 417s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 417s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 417s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 417s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB] 419s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 419s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 419s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B] 419s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB] 419s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B] 419s Fetched 1131 kB in 3s (397 kB/s) 419s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 419s Preparing to unpack .../python3-minimal_3.12.7-1_armhf.deb ... 419s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 419s Setting up python3-minimal (3.12.7-1) ... 420s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 420s Preparing to unpack .../python3_3.12.7-1_armhf.deb ... 420s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 420s Preparing to unpack .../libpython3-stdlib_3.12.7-1_armhf.deb ... 420s Unpacking libpython3-stdlib:armhf (3.12.7-1) over (3.12.6-0ubuntu1) ... 420s Preparing to unpack .../libgnutls30t64_3.8.8-2ubuntu1_armhf.deb ... 420s Unpacking libgnutls30t64:armhf (3.8.8-2ubuntu1) over (3.8.6-2ubuntu1) ... 420s Setting up libgnutls30t64:armhf (3.8.8-2ubuntu1) ... 420s Selecting previously unselected package python3.13-gdbm. 420s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59559 files and directories currently installed.) 420s Preparing to unpack .../python3.13-gdbm_3.13.0-2_armhf.deb ... 420s Unpacking python3.13-gdbm (3.13.0-2) ... 420s Preparing to unpack .../python3-gdbm_3.12.7-1_armhf.deb ... 420s Unpacking python3-gdbm:armhf (3.12.7-1) over (3.12.6-1ubuntu1) ... 420s Preparing to unpack .../libjson-glib-1.0-common_1.10.0+ds-3_all.deb ... 420s Unpacking libjson-glib-1.0-common (1.10.0+ds-3) over (1.10.0+ds-2) ... 420s Preparing to unpack .../libjson-glib-1.0-0_1.10.0+ds-3_armhf.deb ... 420s Unpacking libjson-glib-1.0-0:armhf (1.10.0+ds-3) over (1.10.0+ds-2) ... 420s Preparing to unpack .../libutempter0_1.2.1-4_armhf.deb ... 420s Unpacking libutempter0:armhf (1.2.1-4) over (1.2.1-3build1) ... 420s Setting up libutempter0:armhf (1.2.1-4) ... 420s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ... 420s Setting up python3.13-gdbm (3.13.0-2) ... 420s Setting up libpython3-stdlib:armhf (3.12.7-1) ... 420s Setting up python3 (3.12.7-1) ... 421s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ... 421s Setting up python3-gdbm:armhf (3.12.7-1) ... 421s Processing triggers for man-db (2.12.1-3) ... 421s Processing triggers for libc-bin (2.40-1ubuntu3) ... 421s Reading package lists... 422s Building dependency tree... 422s Reading state information... 422s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 425s autopkgtest [18:37:47]: rebooting testbed after setup commands that affected boot 533s Reading package lists... 533s Building dependency tree... 533s Reading state information... 533s Starting pkgProblemResolver with broken count: 0 533s Starting 2 pkgProblemResolver with broken count: 0 533s Done 534s The following additional packages will be installed: 534s libblas3 libgfortran5 liblapack3 liblbfgsb0 libpython3.13-minimal 534s libpython3.13-stdlib python3-all python3-decorator python3-mpmath 534s python3-nibabel python3-nipy python3-nipy-lib python3-numpy 534s python3-packaging python3-scipy python3-sympy python3-transforms3d 534s python3.13 python3.13-minimal 534s Suggested packages: 534s python-mpmath-doc python3-gmpy2 python3-matplotlib python-nibabel-doc 534s python3-mvpa gcc gfortran python-numpy-doc python3-dev python3-pytest 534s python-scipy-doc texlive-fonts-extra dvipng python-sympy-doc python3.13-venv 534s python3.13-doc binfmt-support 534s Recommended packages: 534s python3-pydicom python3-fuse python3-matplotlib mayavi2 g++ | c++-compiler 534s python3-pil isympy-common 534s The following NEW packages will be installed: 534s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 534s libpython3.13-minimal libpython3.13-stdlib python3-all python3-decorator 534s python3-mpmath python3-nibabel python3-nipy python3-nipy-lib python3-numpy 534s python3-packaging python3-scipy python3-sympy python3-transforms3d 534s python3.13 python3.13-minimal 534s 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. 534s Need to get 38.0 MB/38.0 MB of archives. 534s After this operation, 142 MB of additional disk space will be used. 534s Get:1 /tmp/autopkgtest.NNFFmP/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [716 B] 534s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 535s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 535s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 535s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 535s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 535s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 535s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 535s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 535s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B] 535s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 535s Get:12 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 535s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 535s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 535s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 536s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-nibabel all 5.2.1-2 [2696 kB] 536s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB] 536s Get:18 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-transforms3d all 0.4.2+ds-1 [1359 kB] 536s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-nipy-lib armhf 0.6.1-1 [595 kB] 536s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-nipy all 0.6.1-1 [727 kB] 536s Fetched 38.0 MB in 2s (21.3 MB/s) 536s Selecting previously unselected package libpython3.13-minimal:armhf. 536s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 536s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ... 536s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 537s Selecting previously unselected package python3.13-minimal. 537s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ... 537s Unpacking python3.13-minimal (3.13.0-2) ... 537s Selecting previously unselected package libblas3:armhf. 537s Preparing to unpack .../02-libblas3_3.12.0-3build2_armhf.deb ... 537s Unpacking libblas3:armhf (3.12.0-3build2) ... 537s Selecting previously unselected package libgfortran5:armhf. 537s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 537s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 537s Selecting previously unselected package liblapack3:armhf. 537s Preparing to unpack .../04-liblapack3_3.12.0-3build2_armhf.deb ... 537s Unpacking liblapack3:armhf (3.12.0-3build2) ... 537s Selecting previously unselected package liblbfgsb0:armhf. 537s Preparing to unpack .../05-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 537s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 537s Selecting previously unselected package libpython3.13-stdlib:armhf. 537s Preparing to unpack .../06-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 537s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 537s Selecting previously unselected package python3.13. 537s Preparing to unpack .../07-python3.13_3.13.0-2_armhf.deb ... 537s Unpacking python3.13 (3.13.0-2) ... 537s Selecting previously unselected package python3-all. 537s Preparing to unpack .../08-python3-all_3.12.7-1_armhf.deb ... 537s Unpacking python3-all (3.12.7-1) ... 537s Selecting previously unselected package python3-decorator. 537s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 537s Unpacking python3-decorator (5.1.1-5) ... 537s Selecting previously unselected package python3-mpmath. 537s Preparing to unpack .../10-python3-mpmath_1.3.0-1_all.deb ... 537s Unpacking python3-mpmath (1.3.0-1) ... 537s Selecting previously unselected package python3-numpy. 537s Preparing to unpack .../11-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 537s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 537s Selecting previously unselected package python3-packaging. 537s Preparing to unpack .../12-python3-packaging_24.1-1_all.deb ... 537s Unpacking python3-packaging (24.1-1) ... 537s Selecting previously unselected package python3-scipy. 537s Preparing to unpack .../13-python3-scipy_1.13.1-5_armhf.deb ... 537s Unpacking python3-scipy (1.13.1-5) ... 538s Selecting previously unselected package python3-nibabel. 538s Preparing to unpack .../14-python3-nibabel_5.2.1-2_all.deb ... 538s Unpacking python3-nibabel (5.2.1-2) ... 538s Selecting previously unselected package python3-sympy. 538s Preparing to unpack .../15-python3-sympy_1.13.3-1_all.deb ... 538s Unpacking python3-sympy (1.13.3-1) ... 538s Selecting previously unselected package python3-transforms3d. 538s Preparing to unpack .../16-python3-transforms3d_0.4.2+ds-1_all.deb ... 538s Unpacking python3-transforms3d (0.4.2+ds-1) ... 538s Selecting previously unselected package python3-nipy-lib:armhf. 538s Preparing to unpack .../17-python3-nipy-lib_0.6.1-1_armhf.deb ... 538s Unpacking python3-nipy-lib:armhf (0.6.1-1) ... 538s Selecting previously unselected package python3-nipy. 538s Preparing to unpack .../18-python3-nipy_0.6.1-1_all.deb ... 538s Unpacking python3-nipy (0.6.1-1) ... 538s Selecting previously unselected package autopkgtest-satdep. 538s Preparing to unpack .../19-2-autopkgtest-satdep.deb ... 538s Unpacking autopkgtest-satdep (0) ... 538s Setting up libpython3.13-minimal:armhf (3.13.0-2) ... 538s Setting up python3-decorator (5.1.1-5) ... 539s Setting up libblas3:armhf (3.12.0-3build2) ... 539s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 539s Setting up python3-packaging (24.1-1) ... 539s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 539s Setting up python3.13-minimal (3.13.0-2) ... 540s Setting up python3-mpmath (1.3.0-1) ... 541s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... 541s Setting up python3-sympy (1.13.3-1) ... 555s Setting up liblapack3:armhf (3.12.0-3build2) ... 555s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 555s Setting up python3.13 (3.13.0-2) ... 556s Setting up python3-all (3.12.7-1) ... 556s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 560s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 560s Setting up python3-transforms3d (0.4.2+ds-1) ... 561s Setting up python3-scipy (1.13.1-5) ... 570s Setting up python3-nibabel (5.2.1-2) ... 570s Setting up python3-nipy-lib:armhf (0.6.1-1) ... 570s Setting up python3-nipy (0.6.1-1) ... 571s Setting up autopkgtest-satdep (0) ... 571s Processing triggers for systemd (256.5-2ubuntu4) ... 571s Processing triggers for man-db (2.12.1-3) ... 571s Processing triggers for libc-bin (2.40-1ubuntu3) ... 583s (Reading database ... 65390 files and directories currently installed.) 583s Removing autopkgtest-satdep (0) ... 596s autopkgtest [18:40:38]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import nipy; print(nipy)" ; done 596s autopkgtest [18:40:38]: test autodep8-python3: [----------------------- 598s Testing with python3.13: 599s Traceback (most recent call last): 599s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 599s from . import multiarray 599s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 599s from . import overrides 599s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 599s from numpy.core._multiarray_umath import ( 599s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 599s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 599s 599s During handling of the above exception, another exception occurred: 599s 599s Traceback (most recent call last): 599s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 599s from numpy.__config__ import show as show_config 599s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 599s from numpy.core._multiarray_umath import ( 599s ...<3 lines>... 599s ) 599s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 599s raise ImportError(msg) 599s ImportError: 599s 599s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 599s 599s Importing the numpy C-extensions failed. This error can happen for 599s many reasons, often due to issues with your setup or how NumPy was 599s installed. 599s 599s We have compiled some common reasons and troubleshooting tips at: 599s 599s https://numpy.org/devdocs/user/troubleshooting-importerror.html 599s 599s Please note and check the following: 599s 599s * The Python version is: Python3.13 from "/usr/bin/python3.13" 599s * The NumPy version is: "1.26.4" 599s 599s and make sure that they are the versions you expect. 599s Please carefully study the documentation linked above for further help. 599s 599s Original error was: No module named 'numpy.core._multiarray_umath' 599s 599s 599s The above exception was the direct cause of the following exception: 599s 599s Traceback (most recent call last): 599s File "", line 1, in 599s import nipy; print(nipy) 599s ^^^^^^^^^^^ 599s File "/usr/lib/python3/dist-packages/nipy/__init__.py", line 30, in 599s from nipy.core.api import is_image 599s File "/usr/lib/python3/dist-packages/nipy/core/api.py", line 14, in 599s from .image.image import ( 599s ...<7 lines>... 599s ) 599s File "/usr/lib/python3/dist-packages/nipy/core/image/__init__.py", line 13, in 599s from . import image 599s File "/usr/lib/python3/dist-packages/nipy/core/image/image.py", line 19, in 599s import numpy as np 599s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 599s raise ImportError(msg) from e 599s ImportError: Error importing numpy: you should not try to import numpy from 599s its source directory; please exit the numpy source tree, and relaunch 599s your python interpreter from there. 599s autopkgtest [18:40:41]: test autodep8-python3: -----------------------] 604s autodep8-python3 FAIL non-zero exit status 1 604s autopkgtest [18:40:46]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 607s autopkgtest [18:40:49]: @@@@@@@@@@@@@@@@@@@@ summary 607s command1 PASS 607s autodep8-python3 FAIL non-zero exit status 1