0s autopkgtest [01:38:11]: starting date and time: 2024-11-15 01:38:11+0000 0s autopkgtest [01:38:11]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [01:38:11]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.viiirqkf/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:matplotlib --apt-upgrade multiqc --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=matplotlib/3.8.3-3ubuntu1 -- lxd -r lxd-armhf-10.145.243.16 lxd-armhf-10.145.243.16:autopkgtest/ubuntu/plucky/armhf 76s autopkgtest [01:39:27]: testbed dpkg architecture: armhf 81s autopkgtest [01:39:32]: testbed apt version: 2.9.8 81s autopkgtest [01:39:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 96s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 97s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 97s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1030 kB] 97s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 97s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [102 kB] 97s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [108 kB] 97s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [728 kB] 97s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4136 B] 97s Fetched 2069 kB in 1s (1972 kB/s) 97s Reading package lists... 149s tee: /proc/self/fd/2: Permission denied 174s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 174s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 174s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 174s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 175s Reading package lists... 176s Reading package lists... 176s Building dependency tree... 176s Reading state information... 178s Calculating upgrade... 178s The following packages will be upgraded: 178s libcap-ng0 lxd-installer man-db pastebinit python3-systemd xfsprogs 179s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 179s Need to get 2262 kB of archives. 179s After this operation, 127 kB of additional disk space will be used. 179s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libcap-ng0 armhf 0.8.5-3build1 [13.8 kB] 180s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf man-db armhf 2.13.0-1 [1293 kB] 252s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf lxd-installer all 9 [5084 B] 252s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf pastebinit all 1.7.1-1 [14.9 kB] 253s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-systemd armhf 235-1build5 [44.0 kB] 255s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf xfsprogs armhf 6.8.0-2.2ubuntu2 [891 kB] 302s Preconfiguring packages ... 302s Fetched 2262 kB in 2min 3s (18.4 kB/s) 302s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59560 files and directories currently installed.) 302s Preparing to unpack .../libcap-ng0_0.8.5-3build1_armhf.deb ... 302s Unpacking libcap-ng0:armhf (0.8.5-3build1) over (0.8.5-1) ... 302s Setting up libcap-ng0:armhf (0.8.5-3build1) ... 302s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59560 files and directories currently installed.) 302s Preparing to unpack .../man-db_2.13.0-1_armhf.deb ... 302s Unpacking man-db (2.13.0-1) over (2.12.1-3) ... 302s Preparing to unpack .../lxd-installer_9_all.deb ... 302s Unpacking lxd-installer (9) over (8) ... 302s Preparing to unpack .../pastebinit_1.7.1-1_all.deb ... 302s Unpacking pastebinit (1.7.1-1) over (1.7.0-1) ... 303s Preparing to unpack .../python3-systemd_235-1build5_armhf.deb ... 303s Unpacking python3-systemd (235-1build5) over (235-1build4) ... 303s Preparing to unpack .../xfsprogs_6.8.0-2.2ubuntu2_armhf.deb ... 303s Unpacking xfsprogs (6.8.0-2.2ubuntu2) over (6.8.0-2.2ubuntu1) ... 303s Setting up pastebinit (1.7.1-1) ... 303s Setting up man-db (2.13.0-1) ... 303s Updating database of manual pages ... 305s apparmor_parser: Unable to replace "/usr/bin/man". apparmor_parser: Access denied. You need policy admin privileges to manage profiles. 305s 305s man-db.service is a disabled or a static unit not running, not starting it. 305s Setting up xfsprogs (6.8.0-2.2ubuntu2) ... 305s update-initramfs: deferring update (trigger activated) 306s Setting up lxd-installer (9) ... 307s Setting up python3-systemd (235-1build5) ... 307s Processing triggers for libc-bin (2.40-1ubuntu3) ... 307s Processing triggers for initramfs-tools (0.142ubuntu34) ... 307s Reading package lists... 308s Building dependency tree... 308s Reading state information... 310s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 314s autopkgtest [01:43:25]: rebooting testbed after setup commands that affected boot 369s Error: websocket: bad handshake 428s autopkgtest [01:45:19]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 483s autopkgtest [01:46:14]: @@@@@@@@@@@@@@@@@@@@ apt-source multiqc 512s Get:1 http://ftpmaster.internal/ubuntu plucky/universe multiqc 1.21+dfsg-2 (dsc) [2772 B] 512s Get:2 http://ftpmaster.internal/ubuntu plucky/universe multiqc 1.21+dfsg-2 (tar) [17.0 MB] 512s Get:3 http://ftpmaster.internal/ubuntu plucky/universe multiqc 1.21+dfsg-2 (tar) [1937 kB] 512s Get:4 http://ftpmaster.internal/ubuntu plucky/universe multiqc 1.21+dfsg-2 (diff) [11.9 kB] 512s gpgv: Signature made Sat Aug 31 11:27:49 2024 UTC 512s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 512s gpgv: issuer "tchet@debian.org" 512s gpgv: Can't check signature: No public key 512s dpkg-source: warning: cannot verify inline signature for ./multiqc_1.21+dfsg-2.dsc: no acceptable signature found 514s autopkgtest [01:46:45]: testing package multiqc version 1.21+dfsg-2 517s autopkgtest [01:46:48]: build not needed 525s autopkgtest [01:46:56]: test run-unit-test: preparing testbed 542s Reading package lists... 543s Building dependency tree... 543s Reading state information... 544s Starting pkgProblemResolver with broken count: 0 544s Starting 2 pkgProblemResolver with broken count: 0 544s Done 545s The following additional packages will be installed: 545s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 545s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 545s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 545s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery 545s libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui liblapack3 545s liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 545s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 545s libxft2 libxrender1 libxslt1.1 libxss1 multiqc python-matplotlib-data 545s python3-appdirs python3-brotli python3-click python3-colorama 545s python3-coloredlogs python3-colormath python3-contourpy python3-cycler 545s python3-dateutil python3-decorator python3-fastjsonschema python3-fonttools 545s python3-fs python3-humanfriendly python3-humanize python3-importlib-metadata 545s python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 545s python3-lzstring python3-markdown python3-matplotlib python3-mpmath 545s python3-nbformat python3-networkx python3-numpy python3-packaging 545s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 545s python3-pyaml-env python3-rich-click python3-scipy python3-six 545s python3-spectra python3-sympy python3-tenacity python3-tk python3-traitlets 545s python3-tz python3-ufolib2 python3-unicodedata2 python3.12-tk tk8.6-blt2.5 545s unicode-data x11-common 545s Suggested packages: 545s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 545s python-fastjsonschema-doc python3-pip python-lxml-doc python-markdown-doc 545s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 545s inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi 545s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 545s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 545s python3-gdal python3-pydot python3-pygraphviz gcc gfortran python-numpy-doc 545s python3-dev python3-pytest python-pil-doc python3-pandas python3-ipykernel 545s python-scipy-doc texlive-fonts-extra python-sympy-doc python-tenacity-doc 545s tix python3-tk-dbg python3.13-tk python-traitlets-doc 545s Recommended packages: 545s javascript-common node-clipboard libjs-filesaver pandoc texlive-xetex 545s python3-bs4 python3-cssselect python3-html5lib python3-olefile g++ 545s | c++-compiler isympy-common 545s The following NEW packages will be installed: 545s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 545s fonts-glyphicons-halflings fonts-lyx libblas3 libdeflate0 libfontconfig1 545s libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 545s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery 545s libjs-jquery-metadata libjs-jquery-tablesorter libjs-jquery-ui liblapack3 545s liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libqhull-r8.0 libraqm0 545s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 545s libxft2 libxrender1 libxslt1.1 libxss1 multiqc python-matplotlib-data 545s python3-appdirs python3-brotli python3-click python3-colorama 545s python3-coloredlogs python3-colormath python3-contourpy python3-cycler 545s python3-dateutil python3-decorator python3-fastjsonschema python3-fonttools 545s python3-fs python3-humanfriendly python3-humanize python3-importlib-metadata 545s python3-jupyter-core python3-kiwisolver python3-lxml python3-lz4 545s python3-lzstring python3-markdown python3-matplotlib python3-mpmath 545s python3-nbformat python3-networkx python3-numpy python3-packaging 545s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 545s python3-pyaml-env python3-rich-click python3-scipy python3-six 545s python3-spectra python3-sympy python3-tenacity python3-tk python3-traitlets 545s python3-tz python3-ufolib2 python3-unicodedata2 python3.12-tk tk8.6-blt2.5 545s unicode-data x11-common 545s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. 545s Need to get 71.0 MB/71.0 MB of archives. 545s After this operation, 344 MB of additional disk space will be used. 545s Get:1 /tmp/autopkgtest.v7bKFy/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [708 B] 546s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [909 kB] 579s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 595s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 618s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 620s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 620s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 621s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 621s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 621s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 621s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 621s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.15-1 [685 kB] 622s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7build1 [525 kB] 622s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-7build1 [4840 B] 622s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 622s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.2.1-1 [171 kB] 622s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 622s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 622s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 623s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 623s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 623s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 623s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 623s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 623s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 623s Get:26 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 623s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 624s Get:28 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-metadata all 12-4 [6582 B] 624s Get:29 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 624s Get:30 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 624s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 625s Get:32 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 625s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 625s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB] 625s Get:35 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 625s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB] 625s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 626s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 626s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 626s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 626s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 626s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 626s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu1 [150 kB] 626s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf python3-colorama all 0.4.6-4 [32.1 kB] 626s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf python3-importlib-metadata all 8.5.0-1 [20.7 kB] 626s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf python3-click all 8.1.7-2 [79.5 kB] 626s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-humanfriendly all 10.0-6 [70.8 kB] 626s Get:48 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-coloredlogs all 15.0.1-1 [38.2 kB] 626s Get:49 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-humanize all 4.11.0-1 [58.0 kB] 626s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf python3-markdown all 3.6-1 [73.4 kB] 626s Get:51 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB] 627s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf python3-six all 1.16.0-7 [13.1 kB] 627s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dateutil all 2.9.0-2 [80.3 kB] 627s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 627s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu1 [428 kB] 627s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.7-3 [112 kB] 627s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tk armhf 3.12.6-1ubuntu1 [9806 B] 628s Get:58 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 10.4.0-1ubuntu1 [8848 B] 628s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 628s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.0-2 [192 kB] 628s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B] 628s Get:62 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build2 [321 kB] 628s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 629s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 630s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 630s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 630s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB] 630s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2024.1-2 [31.4 kB] 630s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf python3-appdirs all 1.4.4-4 [10.9 kB] 630s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-4 [91.3 kB] 630s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.0-1 [1234 kB] 630s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.0.2+dfsg-1build4 [24.8 kB] 630s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-unicodedata2 armhf 15.1.0+ds-1build2 [357 kB] 631s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB] 631s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.46.0-1build2 [1402 kB] 631s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-2build1 [71.1 kB] 631s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB] 631s Get:78 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-matplotlib armhf 3.8.3-3ubuntu1 [4597 kB] 631s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fastjsonschema all 2.20.0-1 [20.1 kB] 632s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf python3-platformdirs all 4.3.6-1 [16.8 kB] 632s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 632s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-jupyter-core all 5.7.2-4 [28.0 kB] 632s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-nbformat all 5.9.1-1 [41.2 kB] 632s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB] 632s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-plotly all 5.20.0+dfsg-1 [2766 kB] 632s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyaml-env all 1.2.1-2 [9090 B] 632s Get:87 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-rich-click all 1.6.0-1 [17.6 kB] 632s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 633s Get:89 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-colormath all 3.0.0-4 [36.6 kB] 633s Get:90 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-spectra all 0.0.11-4 [17.2 kB] 633s Get:91 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lzstring all 1.0.4-3 [6262 B] 633s Get:92 http://ftpmaster.internal/ubuntu plucky/universe armhf multiqc all 1.21+dfsg-2 [733 kB] 634s Fetched 71.0 MB in 1min 28s (811 kB/s) 634s Selecting previously unselected package libtcl8.6:armhf. 634s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 634s Preparing to unpack .../00-libtcl8.6_8.6.15+dfsg-2_armhf.deb ... 634s Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ... 634s Selecting previously unselected package libfreetype6:armhf. 634s Preparing to unpack .../01-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 634s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 634s Selecting previously unselected package fonts-dejavu-mono. 634s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ... 634s Unpacking fonts-dejavu-mono (2.37-8) ... 634s Selecting previously unselected package fonts-dejavu-core. 634s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ... 634s Unpacking fonts-dejavu-core (2.37-8) ... 634s Selecting previously unselected package fontconfig-config. 634s Preparing to unpack .../04-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 634s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 634s Selecting previously unselected package libfontconfig1:armhf. 634s Preparing to unpack .../05-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 634s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 634s Selecting previously unselected package libxrender1:armhf. 634s Preparing to unpack .../06-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 634s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 634s Selecting previously unselected package libxft2:armhf. 634s Preparing to unpack .../07-libxft2_2.3.6-1build1_armhf.deb ... 634s Unpacking libxft2:armhf (2.3.6-1build1) ... 634s Selecting previously unselected package x11-common. 634s Preparing to unpack .../08-x11-common_1%3a7.7+23ubuntu3_all.deb ... 634s Unpacking x11-common (1:7.7+23ubuntu3) ... 634s Selecting previously unselected package libxss1:armhf. 635s Preparing to unpack .../09-libxss1_1%3a1.2.3-1build3_armhf.deb ... 635s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 635s Selecting previously unselected package libtk8.6:armhf. 635s Preparing to unpack .../10-libtk8.6_8.6.15-1_armhf.deb ... 635s Unpacking libtk8.6:armhf (8.6.15-1) ... 635s Selecting previously unselected package tk8.6-blt2.5. 635s Preparing to unpack .../11-tk8.6-blt2.5_2.5.3+dfsg-7build1_armhf.deb ... 635s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 635s Selecting previously unselected package blt. 635s Preparing to unpack .../12-blt_2.5.3+dfsg-7build1_armhf.deb ... 635s Unpacking blt (2.5.3+dfsg-7build1) ... 635s Selecting previously unselected package fonts-glyphicons-halflings. 635s Preparing to unpack .../13-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 635s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 635s Selecting previously unselected package fonts-lyx. 635s Preparing to unpack .../14-fonts-lyx_2.4.2.1-1_all.deb ... 635s Unpacking fonts-lyx (2.4.2.1-1) ... 635s Selecting previously unselected package libblas3:armhf. 635s Preparing to unpack .../15-libblas3_3.12.0-3build2_armhf.deb ... 635s Unpacking libblas3:armhf (3.12.0-3build2) ... 635s Selecting previously unselected package libdeflate0:armhf. 635s Preparing to unpack .../16-libdeflate0_1.22-1_armhf.deb ... 635s Unpacking libdeflate0:armhf (1.22-1) ... 635s Selecting previously unselected package libgfortran5:armhf. 635s Preparing to unpack .../17-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 635s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 635s Selecting previously unselected package libgomp1:armhf. 635s 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.../23-libjpeg8_8c-2ubuntu11_armhf.deb ... 635s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 635s Selecting previously unselected package libjs-bootstrap. 635s Preparing to unpack .../24-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 635s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 635s Selecting previously unselected package libjs-jquery. 635s Preparing to unpack .../25-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 635s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 635s Selecting previously unselected package libjs-jquery-metadata. 635s Preparing to unpack .../26-libjs-jquery-metadata_12-4_all.deb ... 635s Unpacking libjs-jquery-metadata (12-4) ... 635s Selecting previously unselected package libjs-jquery-tablesorter. 635s Preparing to unpack .../27-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 635s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 635s Selecting previously unselected package libjs-jquery-ui. 635s Preparing to unpack .../28-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 635s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 635s Selecting previously unselected package liblapack3:armhf. 635s Preparing to unpack .../29-liblapack3_3.12.0-3build2_armhf.deb ... 635s Unpacking liblapack3:armhf (3.12.0-3build2) ... 636s Selecting previously unselected package liblbfgsb0:armhf. 636s Preparing to unpack .../30-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 636s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 636s Selecting previously unselected package liblcms2-2:armhf. 636s Preparing to unpack .../31-liblcms2-2_2.16-2_armhf.deb ... 636s Unpacking liblcms2-2:armhf (2.16-2) ... 636s Selecting previously unselected package liblerc4:armhf. 636s Preparing to unpack .../32-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ... 636s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 636s Selecting previously unselected package libqhull-r8.0:armhf. 636s Preparing to unpack .../33-libqhull-r8.0_2020.2-6build1_armhf.deb ... 636s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 636s Selecting previously unselected package libraqm0:armhf. 636s Preparing to unpack .../34-libraqm0_0.10.1-1build1_armhf.deb ... 636s Unpacking libraqm0:armhf (0.10.1-1build1) ... 636s Selecting previously unselected package libsharpyuv0:armhf. 636s Preparing to unpack .../35-libsharpyuv0_1.4.0-0.1_armhf.deb ... 636s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 636s Selecting previously unselected package libjbig0:armhf. 636s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 636s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 636s Selecting previously unselected package libwebp7:armhf. 636s Preparing to unpack .../37-libwebp7_1.4.0-0.1_armhf.deb ... 636s Unpacking libwebp7:armhf (1.4.0-0.1) ... 636s Selecting previously unselected package libtiff6:armhf. 636s Preparing to unpack .../38-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 636s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 636s Selecting previously unselected package libwebpdemux2:armhf. 636s Preparing to unpack .../39-libwebpdemux2_1.4.0-0.1_armhf.deb ... 636s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 636s Selecting previously unselected package libwebpmux3:armhf. 636s Preparing to unpack .../40-libwebpmux3_1.4.0-0.1_armhf.deb ... 636s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 636s Selecting previously unselected package libxslt1.1:armhf. 636s Preparing to unpack .../41-libxslt1.1_1.1.39-0exp1ubuntu1_armhf.deb ... 636s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 636s Selecting previously unselected package python3-colorama. 636s Preparing to unpack .../42-python3-colorama_0.4.6-4_all.deb ... 636s Unpacking python3-colorama (0.4.6-4) ... 636s Selecting previously unselected package python3-importlib-metadata. 636s Preparing to unpack .../43-python3-importlib-metadata_8.5.0-1_all.deb ... 636s Unpacking python3-importlib-metadata (8.5.0-1) ... 636s Selecting previously unselected package python3-click. 636s Preparing to unpack .../44-python3-click_8.1.7-2_all.deb ... 636s Unpacking python3-click (8.1.7-2) ... 636s Selecting previously unselected package python3-humanfriendly. 636s Preparing to unpack .../45-python3-humanfriendly_10.0-6_all.deb ... 636s Unpacking python3-humanfriendly (10.0-6) ... 636s Selecting previously unselected package python3-coloredlogs. 636s Preparing to unpack .../46-python3-coloredlogs_15.0.1-1_all.deb ... 636s Unpacking python3-coloredlogs (15.0.1-1) ... 636s Selecting previously unselected package python3-humanize. 636s Preparing to unpack .../47-python3-humanize_4.11.0-1_all.deb ... 636s Unpacking python3-humanize (4.11.0-1) ... 636s Selecting previously unselected package python3-markdown. 636s Preparing to unpack .../48-python3-markdown_3.6-1_all.deb ... 636s Unpacking python3-markdown (3.6-1) ... 636s Selecting previously unselected package python-matplotlib-data. 636s Preparing to unpack .../49-python-matplotlib-data_3.8.3-3ubuntu1_all.deb ... 636s Unpacking python-matplotlib-data (3.8.3-3ubuntu1) ... 637s Selecting previously unselected package python3-six. 637s Preparing to unpack .../50-python3-six_1.16.0-7_all.deb ... 637s Unpacking python3-six (1.16.0-7) ... 637s Selecting previously unselected package python3-dateutil. 637s Preparing to unpack .../51-python3-dateutil_2.9.0-2_all.deb ... 637s Unpacking python3-dateutil (2.9.0-2) ... 637s Selecting previously unselected package libopenjp2-7:armhf. 637s Preparing to unpack .../52-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ... 637s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 637s Selecting previously unselected package python3-pil:armhf. 637s Preparing to unpack .../53-python3-pil_10.4.0-1ubuntu1_armhf.deb ... 637s Unpacking python3-pil:armhf (10.4.0-1ubuntu1) ... 637s Selecting previously unselected package python3.12-tk. 637s Preparing to unpack .../54-python3.12-tk_3.12.7-3_armhf.deb ... 637s Unpacking python3.12-tk (3.12.7-3) ... 637s Selecting previously unselected package 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(2.16-2) ... 644s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 644s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ... 644s Setting up python3-importlib-metadata (8.5.0-1) ... 644s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 644s Setting up python3-colorama (0.4.6-4) ... 644s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 644s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 644s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ... 644s Setting up fonts-lyx (2.4.2.1-1) ... 644s Setting up python3-tenacity (8.5.0-0ubuntu1) ... 644s Setting up x11-common (1:7.7+23ubuntu3) ... 645s Setting up libdeflate0:armhf (1.22-1) ... 645s Setting up libqhull-r8.0:armhf (2020.2-6build1) ... 645s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 645s Setting up python3-click (8.1.7-2) ... 645s Setting up python3-networkx (3.2.1-4ubuntu1) ... 647s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 647s Setting up python3-platformdirs (4.3.6-1) ... 647s Setting up python3-tz (2024.1-2) ... 647s Setting up unicode-data (15.1.0-1) ... 647s Setting up python3-six (1.16.0-7) ... 647s Setting up python3-decorator (5.1.1-5) ... 647s Setting up libblas3:armhf (3.12.0-3build2) ... 647s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 647s Setting up python3-pyaml-env (1.2.1-2) ... 647s /usr/lib/python3/dist-packages/pyaml_env/parse_config.py:58: SyntaxWarning: invalid escape sequence '\w' 647s type_tag_pattern = re.compile(f'({type_tag}\w+\s)') 647s Setting up python3-packaging (24.1-1) ... 648s Setting up python3-humanfriendly (10.0-6) ... 648s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 648s Setting up python3-brotli (1.1.0-2build2) ... 648s Setting up python3-cycler (0.12.1-1) ... 648s Setting up libimagequant0:armhf (2.18.0-1build1) ... 648s Setting up fonts-dejavu-mono (2.37-8) ... 648s Setting up python3-kiwisolver (1.4.7-2build1) ... 648s Setting up python3-markdown (3.6-1) ... 649s Setting up libtcl8.6:armhf (8.6.15+dfsg-2) ... 649s Setting up fonts-dejavu-core (2.37-8) ... 649s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 649s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 649s Setting up libwebp7:armhf (1.4.0-0.1) ... 649s Setting up python3-rich-click (1.6.0-1) ... 649s Setting up python3-fastjsonschema (2.20.0-1) ... 649s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 649s Setting up libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 649s Setting up libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 649s Setting up libharfbuzz0b:armhf (10.0.1-1) ... 649s Setting up python3-dateutil (2.9.0-2) ... 650s Setting up libxss1:armhf (1:1.2.3-1build3) ... 650s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 650s Setting up python3-mpmath (1.3.0-1) ... 650s Setting up python3-lzstring (1.0.4-3) ... 650s Setting up python3-humanize (4.11.0-1) ... 651s Setting up python-matplotlib-data (3.8.3-3ubuntu1) ... 651s Setting up libwebpmux3:armhf (1.4.0-0.1) ... 651s Setting up python3-coloredlogs (15.0.1-1) ... 651s Setting up python3-appdirs (1.4.4-4) ... 651s Setting up python3-jupyter-core (5.7.2-4) ... 651s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 651s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 651s Setting up python3-sympy (1.13.3-1) ... 659s Setting up liblapack3:armhf (3.12.0-3build2) ... 659s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 659s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 659s Setting up libwebpdemux2:armhf (1.4.0-0.1) ... 659s Setting up python3-nbformat (5.9.1-1) ... 659s Setting up python3-fs (2.4.16-4) ... 660s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 660s Setting up libjs-jquery-metadata (12-4) ... 660s Setting up libraqm0:armhf (0.10.1-1build1) ... 660s Setting up python3-plotly (5.20.0+dfsg-1) ... 669s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 671s Setting up python3-colormath (3.0.0-4) ... 671s /usr/lib/python3/dist-packages/colormath/chromatic_adaptation.py:85: SyntaxWarning: invalid escape sequence '\*' 671s logger.debug(" \* Applying adaptation matrix: %s", adaptation) 671s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:684: SyntaxWarning: invalid escape sequence '\s' 671s """ 671s /usr/lib/python3/dist-packages/colormath/color_appearance_models.py:788: SyntaxWarning: invalid escape sequence '\s' 671s """ 671s /usr/lib/python3/dist-packages/colormath/color_conversions.py:40: SyntaxWarning: invalid escape sequence '\*' 671s logger.debug(" \* Applying RGB conversion matrix: %s->%s", 671s /usr/lib/python3/dist-packages/colormath/color_conversions.py:488: SyntaxWarning: invalid escape sequence '\-' 671s logger.debug(" \- Target RGB space: %s", target_rgb) 671s /usr/lib/python3/dist-packages/colormath/color_conversions.py:490: SyntaxWarning: invalid escape sequence '\-' 671s logger.debug(" \- Target native illuminant: %s", target_illum) 671s /usr/lib/python3/dist-packages/colormath/color_conversions.py:491: SyntaxWarning: invalid escape sequence '\-' 671s logger.debug(" \- XYZ color's illuminant: %s", cobj.illuminant) 671s /usr/lib/python3/dist-packages/colormath/color_conversions.py:497: SyntaxWarning: invalid escape sequence '\*' 671s logger.debug(" \* Applying transformation from %s to %s ", 671s /usr/lib/python3/dist-packages/colormath/color_conversions.py:503: SyntaxWarning: invalid escape sequence '\*' 671s logger.debug(" \* New values: %.3f, %.3f, %.3f", 671s /usr/lib/python3/dist-packages/colormath/color_objects.py:452: SyntaxWarning: invalid escape sequence '\-' 671s logger.debug(" \- Original illuminant: %s", self.illuminant) 671s /usr/lib/python3/dist-packages/colormath/color_objects.py:453: SyntaxWarning: invalid escape sequence '\-' 671s logger.debug(" \- Target illuminant: %s", target_illuminant) 671s /usr/lib/python3/dist-packages/colormath/color_objects.py:459: SyntaxWarning: invalid escape sequence '\*' 671s logger.debug(" \* Applying transformation from %s to %s ", 672s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 672s Setting up python3-lxml:armhf (5.3.0-1) ... 672s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 672s Setting up python3-contourpy (1.3.0-2) ... 672s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 672s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 672s Setting up libxft2:armhf (2.3.6-1build1) ... 672s Setting up python3-scipy (1.13.1-5) ... 676s Setting up python3-spectra (0.0.11-4) ... 677s Setting up libtk8.6:armhf (8.6.15-1) ... 677s Setting up python3.12-tk (3.12.7-3) ... 677s Setting up python3-pil:armhf (10.4.0-1ubuntu1) ... 677s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 677s Setting up blt (2.5.3+dfsg-7build1) ... 677s Setting up python3-tk:armhf (3.12.6-1ubuntu1) ... 677s Setting up python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ... 677s Setting up python3-fonttools (4.46.0-1build2) ... 679s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 679s Setting up python3-matplotlib (3.8.3-3ubuntu1) ... 681s Setting up multiqc (1.21+dfsg-2) ... 682s Setting up autopkgtest-satdep (0) ... 682s Processing triggers for libc-bin (2.40-1ubuntu3) ... 682s Processing triggers for man-db (2.13.0-1) ... 722s (Reading database ... 84998 files and directories currently installed.) 722s Removing autopkgtest-satdep (0) ... 734s autopkgtest [01:50:25]: test run-unit-test: [----------------------- 740s 740s /// MultiQC 🔍 | v1.21 740s 740s Usage: multiqc [OPTIONS] [ANALYSIS DIRECTORY] 740s 740s MultiQC aggregates results from bioinformatics analyses across many samples 740s into a single report. 740s It searches a given directory for analysis logs and compiles a HTML report. 740s It's a general use tool, perfect for summarising the output from numerous 740s bioinformatics tools. 740s To run, supply with one or more directory to scan for analysis results. For 740s example, to run in the current working directory, use 'multiqc .' 740s 740s ╭─ Main options ───────────────────────────────────────────────────────────────╮ 740s │ --force -f Overwrite any existing reports │ 740s │ --config -c Specific config file to load, after those in MultiQC │ 740s │ dir / home dir / working dir. │ 740s │ (PATH) │ 740s │ --cl-config Specify MultiQC config YAML on the command line │ 740s │ (TEXT) │ 740s │ --filename -n Report filename. Use 'stdout' to print to standard │ 740s │ out. │ 740s │ (TEXT) │ 740s │ --outdir -o Create report in the specified output directory. │ 740s │ (TEXT) │ 740s │ --ignore -x Ignore analysis files (GLOB EXPRESSION) │ 740s │ --ignore-samples Ignore sample names (GLOB EXPRESSION) │ 740s │ --ignore-symlinks Ignore symlinked directories and files │ 740s │ --file-list -l Supply a file containing a list of file paths to be │ 740s │ searched, one per row │ 740s ╰──────────────────────────────────────────────────────────────────────────────╯ 740s ╭─ Choosing modules to run ────────────────────────────────────────────────────╮ 740s │ --module -m Use only this module. Can specify multiple times. │ 740s │ (MODULE NAME) │ 740s │ --exclude -e Do not use this module. Can specify multiple times. │ 740s │ (MODULE NAME) │ 740s ╰──────────────────────────────────────────────────────────────────────────────╯ 740s ╭─ Sample handling ────────────────────────────────────────────────────────────╮ 740s │ --dirs -d Prepend directory to sample names │ 740s │ --dirs-depth -dd Prepend n directories to sample names. Negative number │ 740s │ to take from start of path. │ 740s │ (INTEGER) │ 740s │ --fullnames -s Do not clean the sample names (leave as full file │ 740s │ name) │ 740s │ --fn_as_s_name Use the log filename as the sample name │ 740s │ --replace-names TSV file to rename sample names during report │ 740s │ generation │ 740s │ (PATH) │ 740s ╰──────────────────────────────────────────────────────────────────────────────╯ 740s ╭─ Report customisation ───────────────────────────────────────────────────────╮ 740s │ --title -i Report title. Printed as page header, used for │ 740s │ filename if not otherwise specified. │ 740s │ (TEXT) │ 740s │ --comment -b Custom comment, will be printed at the top of the │ 740s │ report. │ 740s │ (TEXT) │ 740s │ --template -t Report template to use. │ 740s │ (default|gathered|geo|highcharts|sections|simple) │ 740s │ --sample-names TSV file containing alternative sample names for │ 740s │ renaming buttons in the report │ 740s │ (PATH) │ 740s │ --sample-filters TSV file containing show/hide patterns for the report │ 740s │ (PATH) │ 740s │ --custom-css-file Custom CSS file to add to the final report (PATH) │ 740s ╰──────────────────────────────────────────────────────────────────────────────╯ 740s ╭─ Output files ───────────────────────────────────────────────────────────────╮ 740s │ --flat -fp Use only flat plots (static images) │ 740s │ --interactive -ip Use only interactive plots (in-browser Javascript) │ 740s │ --export -p Export plots as static images in addition to the report │ 740s │ --data-dir Force the parsed data directory to be created. │ 740s │ --no-data-dir Prevent the parsed data directory from being created. │ 740s │ --data-format -k Output parsed data in a different format. │ 740s │ (tsv|csv|json|yaml) │ 740s │ --zip-data-dir -z Compress the data directory. │ 740s │ --no-report Do not generate a report, only export data and plots │ 740s │ --pdf Creates PDF report with the 'simple' template. Requires │ 740s │ Pandoc to be installed. │ 740s ╰──────────────────────────────────────────────────────────────────────────────╯ 740s ╭─ MultiQC behaviour ──────────────────────────────────────────────────────────╮ 740s │ --verbose -v Increase output verbosity. (INTEGER RANGE) │ 740s │ --quiet -q Only show log warnings │ 740s │ --strict Don't catch exceptions, run additional code checks │ 740s │ to help development. │ 740s │ --development,--dev Development mode. Do not compress and minimise JS, │ 740s │ export uncompressed plot data │ 740s │ --require-logs Require all explicitly requested modules to have │ 740s │ log files. If not, MultiQC will exit with an error. │ 740s │ --profile-runtime Add analysis of how long MultiQC takes to run to │ 740s │ the report │ 740s │ --no-megaqc-upload Don't upload generated report to MegaQC, even if │ 740s │ MegaQC options are found │ 740s │ --no-ansi Disable coloured log output │ 740s │ --version Show the version and exit. │ 740s │ --help -h Show this message and exit. │ 740s ╰──────────────────────────────────────────────────────────────────────────────╯ 740s 740s See http://multiqc.info for more details. 740s 741s FIXME: The test data should be delivered in a separate binary package once freeze is over 741s 741s /// MultiQC 🔍 | v1.21 741s 743s | multiqc | MultiQC Version v1.25.1 now available! 743s | multiqc | Search path : /tmp/autopkgtest.v7bKFy/autopkgtest_tmp/data 743s | searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 121/121 744s | feature_counts | Found 8 reports 744s | star | Found 8 reports 744s | cutadapt | Found 16 reports 744s | fastqc | Found 32 reports 744s | multiqc | Report : multiqc_report.html 744s | multiqc | Data : multiqc_data 744s | multiqc | Could not include file 'assets/js/packages/jszip.min.js': [Errno 2] No such file or directory: '/tmp/tmpqwrt1jlw/assets/js/packages/jszip.min.js' 744s | multiqc | Could not include file 'assets/js/packages/plotly-2.27.0.min.js': [Errno 2] No such file or directory: '/tmp/tmpqwrt1jlw/assets/js/packages/plotly-2.27.0.min.js' 745s | multiqc | MultiQC complete 745s -e 745s PASS 745s 745s autopkgtest [01:50:36]: test run-unit-test: -----------------------] 752s run-unit-test PASS 752s autopkgtest [01:50:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 774s autopkgtest [01:51:05]: ERROR: "rm -rf /tmp/autopkgtest.v7bKFy/run-unit-test-artifacts /tmp/autopkgtest.v7bKFy/autopkgtest_tmp" failed with stderr "Error: websocket: bad handshake 774s "