0s autopkgtest [18:05:49]: starting date and time: 2024-11-13 18:05:49+0000
  0s autopkgtest [18:05:49]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [18:05:49]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.u1j6yfri/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade mdanalysis --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.188 lxd-armhf-10.145.243.188:autopkgtest/ubuntu/plucky/armhf
 52s autopkgtest [18:06:41]: testbed dpkg architecture: armhf
 54s autopkgtest [18:06:43]: testbed apt version: 2.9.8
 54s autopkgtest [18:06:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 62s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 62s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB]
 62s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [971 kB]
 63s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 63s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB]
 63s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [106 kB]
 63s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [647 kB]
 63s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB]
 63s Fetched 1943 kB in 1s (1860 kB/s)
 63s Reading package lists...
 82s tee: /proc/self/fd/2: Permission denied
104s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
104s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
104s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
104s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
105s Reading package lists...
105s Reading package lists...
106s Building dependency tree...
106s Reading state information...
106s Calculating upgrade...
107s The following packages were automatically installed and are no longer required:
107s   libperl5.38t64 perl-modules-5.38 python3-netifaces
107s Use 'apt autoremove' to remove them.
107s The following NEW packages will be installed:
107s   libperl5.40 perl-modules-5.40 python3.13-gdbm systemd-cryptsetup
107s The following packages will be upgraded:
107s   apport apport-core-dump-handler base-files base-passwd bash-completion
107s   dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info
107s   install-info iproute2 libarchive13t64 libatomic1 libattr1
107s   libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3
107s   libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3
107s   libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libdb5.3t64
107s   libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 libevdev2
107s   libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 libgnutls30t64
107s   libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common
107s   libkeyutils1 libldap-common libldap2 liblocale-gettext-perl libmaxminddb0
107s   libmnl0 libnetfilter-conntrack3 libnetplan1 libnghttp2-14 libnspr4
107s   libnss-systemd libnvme1t64 libpam-systemd libpipeline1 libplymouth5
107s   libpng16-16t64 libpopt0 libpython3-stdlib libpython3.12-minimal
107s   libpython3.12-stdlib libsgutils2-1.46-2 libssh2-1t64 libstdc++6
107s   libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl
107s   libtraceevent1 libtraceevent1-plugin libudev1 libudisks2-0 liburcu8t64
107s   libutempter0 libuv1t64 libx11-6 libx11-data libxau6 libxmlb2 mawk
107s   motd-news-config nano netplan-generator netplan.io openssh-client
107s   openssh-server openssh-sftp-server pci.ids perl perl-base plymouth
107s   plymouth-theme-ubuntu-text python3 python3-apport python3-certifi
107s   python3-cffi-backend python3-configobj python3-gdbm python3-gi python3-idna
107s   python3-jaraco.functools python3-json-pointer python3-jsonpatch
107s   python3-lazr.restfulclient python3-lazr.uri python3-minimal
107s   python3-more-itertools python3-netplan python3-oauthlib
107s   python3-problem-report python3-typeguard python3-urllib3 python3-wadllib
107s   python3-zipp python3.12 python3.12-gdbm python3.12-minimal sg3-utils
107s   sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv
107s   systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny xxd
107s 140 upgraded, 4 newly installed, 0 to remove and 0 not upgraded.
107s Need to get 45.4 MB of archives.
107s After this operation, 43.1 MB of additional disk space will be used.
107s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B]
107s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB]
108s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB]
108s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB]
108s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB]
108s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB]
108s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB]
108s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB]
108s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB]
108s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B]
108s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB]
108s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB]
108s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB]
108s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB]
108s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB]
108s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB]
108s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB]
108s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB]
108s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB]
108s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB]
108s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB]
108s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB]
108s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB]
108s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB]
108s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB]
108s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB]
108s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB]
108s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB]
108s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB]
108s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB]
108s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB]
108s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB]
108s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB]
108s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB]
108s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB]
108s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB]
108s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB]
108s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB]
109s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB]
109s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB]
109s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B]
109s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB]
109s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB]
109s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB]
109s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB]
109s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB]
109s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB]
109s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB]
109s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB]
109s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B]
109s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB]
109s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB]
109s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB]
109s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB]
109s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB]
109s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB]
109s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB]
109s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B]
109s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB]
109s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB]
109s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB]
109s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB]
109s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB]
109s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB]
109s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB]
109s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB]
109s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB]
109s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB]
109s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB]
109s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B]
109s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB]
109s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB]
109s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB]
109s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB]
109s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB]
109s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB]
109s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB]
109s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB]
109s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB]
109s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB]
109s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB]
109s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB]
109s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB]
109s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB]
109s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B]
109s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB]
109s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB]
109s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B]
109s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB]
109s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB]
109s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB]
109s Get:92 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B]
109s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB]
109s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB]
109s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB]
109s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB]
109s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB]
109s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB]
109s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB]
109s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B]
109s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB]
109s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB]
110s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB]
110s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB]
110s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB]
110s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB]
110s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB]
110s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B]
110s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB]
110s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B]
110s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB]
110s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB]
110s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB]
110s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB]
110s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B]
110s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB]
110s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB]
110s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B]
110s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB]
110s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB]
110s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB]
110s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB]
110s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB]
110s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB]
110s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB]
110s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B]
110s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B]
110s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB]
110s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB]
110s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB]
110s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB]
110s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B]
110s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB]
110s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB]
110s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB]
110s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB]
110s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB]
110s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB]
110s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB]
110s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB]
110s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB]
110s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B]
110s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB]
111s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB]
111s Preconfiguring packages ...
111s Fetched 45.4 MB in 3s (13.4 MB/s)
111s (Reading database ... 
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125s Setting up libpipeline1:armhf (1.5.8-1) ...
125s Setting up motd-news-config (13.5ubuntu3) ...
125s Setting up libtext-iconv-perl:armhf (1.7-8build4) ...
125s Setting up libtext-charwidth-perl:armhf (0.04-11build4) ...
125s Setting up liburcu8t64:armhf (0.14.1-1) ...
125s Setting up libxau6:armhf (1:1.0.11-1) ...
125s Setting up libkeyutils1:armhf (1.6.3-4ubuntu2) ...
125s Setting up pci.ids (0.0~2024.10.24-1) ...
125s Setting up distro-info-data (0.63) ...
125s Setting up libfastjson4:armhf (1.2304.0-2) ...
125s Setting up libinih1:armhf (58-1ubuntu1) ...
125s Setting up libmaxminddb0:armhf (1.11.0-1) ...
125s Setting up python3.12-gdbm (3.12.7-3) ...
125s Setting up libxmlb2:armhf (0.3.21-1) ...
125s Setting up libedit2:armhf (3.1-20240808-1) ...
125s Setting up libuv1t64:armhf (1.48.0-7) ...
125s Setting up libpython3.12-minimal:armhf (3.12.7-3) ...
125s Setting up libnghttp2-14:armhf (1.64.0-1) ...
125s Setting up libsgutils2-1.46-2:armhf (1.46-3ubuntu5) ...
125s Setting up libnetplan1:armhf (1.1.1-1) ...
125s Setting up libldap-common (2.6.8+dfsg-1~exp4ubuntu3) ...
125s Setting up usbutils (1:018-1) ...
125s Setting up xxd (2:9.1.0777-1ubuntu1) ...
125s Setting up libelf1t64:armhf (0.192-4) ...
125s Setting up libdw1t64:armhf (0.192-4) ...
125s Setting up tzdata (2024b-1ubuntu2) ...
125s 
125s Current default time zone: 'Etc/UTC'
125s Local time is now:      Wed Nov 13 18:07:54 UTC 2024.
125s Universal Time is now:  Wed Nov 13 18:07:54 UTC 2024.
125s Run 'dpkg-reconfigure tzdata' if you wish to change it.
125s 
125s Setting up libftdi1-2:armhf (1.5-7) ...
125s Setting up libflashrom1:armhf (1.4.0-3ubuntu1) ...
125s Setting up vim-common (2:9.1.0777-1ubuntu1) ...
125s Installing new version of config file /etc/vim/vimrc ...
125s Setting up libx11-data (2:1.8.10-2) ...
125s Setting up libnspr4:armhf (2:4.35-1.1ubuntu2) ...
125s Setting up bash-completion (1:2.14.0-2) ...
125s Setting up libbytesize-common (2.11-1ubuntu1) ...
125s Setting up libblockdev-utils3:armhf (3.2.1-1) ...
125s Setting up libpng16-16t64:armhf (1.6.44-2) ...
125s Setting up libmnl0:armhf (1.0.5-3) ...
125s Setting up libatomic1:armhf (14.2.0-8ubuntu1) ...
125s Setting up libsystemd-shared:armhf (256.5-2ubuntu4) ...
125s Setting up dhcpcd-base (1:10.1.0-2) ...
125s Setting up libutempter0:armhf (1.2.1-4) ...
125s Setting up nano (8.2-1) ...
125s Setting up libblockdev-fs3:armhf (3.2.1-1) ...
125s Setting up perl-modules-5.40 (5.40.0-7) ...
125s Setting up libnetfilter-conntrack3:armhf (1.1.0-1) ...
125s Setting up libtraceevent1:armhf (1:1.8.3-1ubuntu1) ...
125s Setting up libx11-6:armhf (2:1.8.10-2) ...
125s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ...
125s Setting up mawk (1.3.4.20240905-1) ...
125s Setting up libbytesize1:armhf (2.11-1ubuntu1) ...
125s Setting up libgpgme11t64:armhf (1.23.2-5ubuntu4) ...
125s Setting up libssh2-1t64:armhf (1.11.1-1) ...
125s Setting up libdrm-common (2.4.123-1) ...
125s Setting up libarchive13t64:armhf (3.7.4-1.1) ...
125s Setting up libjson-c5:armhf (0.18+ds-1) ...
125s Setting up libevdev2:armhf (1.13.3+dfsg-1) ...
125s Setting up libldap2:armhf (2.6.8+dfsg-1~exp4ubuntu3) ...
125s Setting up info (7.1.1-1) ...
125s Setting up liblocale-gettext-perl (1.07-7build1) ...
125s Setting up libbpf1:armhf (1:1.5.0-1) ...
125s Setting up libudisks2-0:armhf (2.10.1-11ubuntu1) ...
125s Setting up python3.13-gdbm (3.13.0-2) ...
125s Setting up libpopt0:armhf (1.19+dfsg-2) ...
125s Setting up sg3-utils (1.46-3ubuntu5) ...
125s Setting up python3.12-minimal (3.12.7-3) ...
126s Setting up libpython3.12-stdlib:armhf (3.12.7-3) ...
126s Setting up libblockdev-mdraid3:armhf (3.2.1-1) ...
126s Setting up libblockdev-crypto3:armhf (3.2.1-1) ...
126s Setting up libblockdev-swap3:armhf (3.2.1-1) ...
126s Setting up iproute2 (6.10.0-2ubuntu1) ...
126s Setting up openssh-client (1:9.7p1-7ubuntu5) ...
126s Setting up python3.12 (3.12.7-3) ...
127s Setting up libblockdev-loop3:armhf (3.2.1-1) ...
127s Setting up systemd (256.5-2ubuntu4) ...
127s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring.
127s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'.
127s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring.
128s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ...
128s Setting up libblockdev3:armhf (3.2.1-1) ...
128s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ...
128s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ...
128s Setting up libblockdev-part3:armhf (3.2.1-1) ...
128s Setting up sg3-utils-udev (1.46-3ubuntu5) ...
128s update-initramfs: deferring update (trigger activated)
128s Setting up libperl5.40:armhf (5.40.0-7) ...
128s Setting up perl (5.40.0-7) ...
128s Setting up systemd-cryptsetup (256.5-2ubuntu4) ...
128s Setting up libnvme1t64 (1.11-1) ...
128s Setting up systemd-timesyncd (256.5-2ubuntu4) ...
129s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it.
129s Setting up udev (256.5-2ubuntu4) ...
129s Setting up libdpkg-perl (1.22.11ubuntu3) ...
129s Setting up libblockdev-nvme3:armhf (3.2.1-1) ...
129s Setting up libdrm2:armhf (2.4.123-1) ...
129s Setting up libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) ...
129s Setting up libplymouth5:armhf (24.004.60-1ubuntu11) ...
129s Setting up netplan-generator (1.1.1-1) ...
129s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
129s Setting up libpython3-stdlib:armhf (3.12.7-1) ...
129s Setting up systemd-resolved (256.5-2ubuntu4) ...
130s Setting up openssh-sftp-server (1:9.7p1-7ubuntu5) ...
130s Setting up udisks2 (2.10.1-11ubuntu1) ...
130s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied
130s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied
130s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied
130s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied
130s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied
130s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied
130s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied
130s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied
130s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied
130s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied
130s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied
130s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied
130s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied
130s Setting up systemd-sysv (256.5-2ubuntu4) ...
130s Setting up openssh-server (1:9.7p1-7ubuntu5) ...
132s Setting up plymouth (24.004.60-1ubuntu11) ...
132s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
132s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
132s Setting up libfwupd2:armhf (1.9.26-2) ...
132s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ...
132s Setting up python3 (3.12.7-1) ...
132s Setting up python3-zipp (3.21.0-1) ...
132s Setting up dpkg-dev (1.22.11ubuntu3) ...
132s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ...
132s update-initramfs: deferring update (trigger activated)
132s Setting up python3-oauthlib (3.2.2-2) ...
133s Setting up python3-configobj (5.0.9-1) ...
133s Setting up python3-certifi (2024.8.30+dfsg-1) ...
133s Setting up python3-gi (3.50.0-3) ...
133s Setting up python3-idna (3.8-2) ...
133s Setting up python3-urllib3 (2.0.7-2ubuntu0.1) ...
134s Setting up python3-json-pointer (2.4-2) ...
134s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ...
134s Setting up fwupd (1.9.26-2) ...
134s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
134s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
134s fwupd.service is a disabled or a static unit not running, not starting it.
134s Setting up python3-cffi-backend:armhf (1.17.1-2) ...
134s Setting up python3-more-itertools (10.5.0-1) ...
135s Setting up python3-jaraco.functools (4.1.0-1) ...
135s Setting up python3-gdbm:armhf (3.12.7-1) ...
135s Setting up python3-problem-report (2.30.0-0ubuntu5) ...
135s Setting up ssh-import-id (5.11-0ubuntu3) ...
135s Setting up python3-jsonpatch (1.32-4) ...
135s Setting up python3-typeguard (4.4.1-1) ...
135s Setting up ufw (0.36.2-8) ...
136s Setting up python3-lazr.uri (1.0.6-4) ...
136s Setting up python3-apport (2.30.0-0ubuntu5) ...
137s Setting up python3-wadllib (2.0.0-1) ...
137s Setting up python3-netplan (1.1.1-1) ...
137s Setting up python3-lazr.restfulclient (0.14.6-2) ...
137s Setting up netplan.io (1.1.1-1) ...
137s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ...
138s Setting up apport (2.30.0-0ubuntu5) ...
138s Installing new version of config file /etc/apport/crashdb.conf ...
138s apport-autoreport.service is a disabled or a static unit not running, not starting it.
138s Processing triggers for dbus (1.14.10-4ubuntu5) ...
138s Processing triggers for shared-mime-info (2.4-5) ...
139s Processing triggers for install-info (7.1.1-1) ...
139s Processing triggers for initramfs-tools (0.142ubuntu34) ...
139s Processing triggers for libc-bin (2.40-1ubuntu3) ...
139s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ...
139s Processing triggers for man-db (2.12.1-3) ...
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
142s The following packages will be REMOVED:
142s   libperl5.38t64* perl-modules-5.38* python3-netifaces*
143s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
143s After this operation, 41.7 MB disk space will be freed.
143s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 61506 files and directories currently installed.)
143s Removing libperl5.38t64:armhf (5.38.2-5) ...
143s Removing perl-modules-5.38 (5.38.2-5) ...
143s Removing python3-netifaces:armhf (0.11.0-2build3) ...
143s Processing triggers for man-db (2.12.1-3) ...
143s Processing triggers for libc-bin (2.40-1ubuntu3) ...
146s autopkgtest [18:08:15]: rebooting testbed after setup commands that affected boot
216s autopkgtest [18:09:25]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct  2 16:39:14 UTC 2
244s autopkgtest [18:09:53]: @@@@@@@@@@@@@@@@@@@@ apt-source mdanalysis
260s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (dsc) [2889 B]
260s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (tar) [47.0 MB]
260s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mdanalysis 2.7.0-5 (diff) [10.9 kB]
260s gpgv: Signature made Sat Aug 10 17:37:57 2024 UTC
260s gpgv:                using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA
260s gpgv:                issuer "dparsons@debian.org"
260s gpgv: Can't check signature: No public key
260s dpkg-source: warning: cannot verify inline signature for ./mdanalysis_2.7.0-5.dsc: no acceptable signature found
262s autopkgtest [18:10:11]: testing package mdanalysis version 2.7.0-5
264s autopkgtest [18:10:13]: build not needed
270s autopkgtest [18:10:19]: test test-mdanalysis: preparing testbed
280s Reading package lists...
280s Building dependency tree...
280s Reading state information...
281s Starting pkgProblemResolver with broken count: 0
281s Starting 2 pkgProblemResolver with broken count: 0
281s Done
282s The following additional packages will be installed:
282s   autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
282s   cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cython3 debhelper
282s   debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
282s   dwz fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
282s   fonts-lato fonts-lyx fonts-mathjax fonts-urw-base35 g++ g++-14
282s   g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-14
282s   gcc-14-arm-linux-gnueabihf gcc-arm-linux-gnueabihf gettext intltool-debian
282s   libaec0 libarchive-zip-perl libasan8 libblas3 libc-dev-bin libc6-dev
282s   libcairo2 libcc1-0 libcrypt-dev libdebhelper-perl libdeflate0 libexpat1-dev
282s   libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6
282s   libgcc-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
282s   libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libisl23 libjbig0
282s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-mathjax
282s   libjs-sphinxdoc libjs-underscore libjson-perl liblapack3 liblbfgsb0
282s   liblcms2-2 liblerc4 liblzf1 libmpc3 libnetcdf19t64 libopenjp2-7
282s   libpixman-1-0 libpython3-all-dev libpython3-dev libpython3.12-dev
282s   libpython3.12t64 libpython3.13 libpython3.13-dev libpython3.13-minimal
282s   libpython3.13-stdlib libqhull-r8.0 libraqm0 libsharpyuv0 libstdc++-14-dev
282s   libsz2 libtcl8.6 libtiff6 libtk8.6 libtool libubsan1 libwebp7 libwebpdemux2
282s   libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1
282s   libxss1 linux-libc-dev m4 po-debconf pybuild-plugin-pyproject
282s   python-matplotlib-data python-mdanalysis-doc python3-alabaster python3-all
282s   python3-all-dev python3-appdirs python3-biopython python3-brotli
282s   python3-build python3-cairo python3-cftime python3-citeproc
282s   python3-contourpy python3-cycler python3-dateutil python3-decorator
282s   python3-defusedxml python3-dev python3-docutils python3-duecredit
282s   python3-fasteners python3-fonttools python3-freetype python3-fs
282s   python3-griddataformats python3-gsd python3-h5py python3-h5py-serial
282s   python3-hypothesis python3-imagesize python3-iniconfig python3-installer
282s   python3-joblib python3-kiwisolver python3-latexcodec python3-looseversion
282s   python3-lxml python3-lz4 python3-matplotlib python3-mda-xdrlib
282s   python3-mdanalysis python3-mmtf python3-monotonic python3-mpmath
282s   python3-mrcfile python3-msgpack python3-msmb-theme python3-netcdf4
282s   python3-networkx python3-numpy python3-packaging python3-pandas
282s   python3-pandas-lib python3-pil python3-pil.imagetk python3-pluggy
282s   python3-pybtex python3-pybtex-docutils python3-pyproject-hooks
282s   python3-pytest python3-reportlab python3-rlpycairo python3-roman
282s   python3-scipy python3-seaborn python3-six python3-sklearn
282s   python3-sklearn-lib python3-snowballstemmer python3-sortedcontainers
282s   python3-sphinx python3-sphinx-rtd-theme python3-sphinx-sitemap
282s   python3-sphinxcontrib.bibtex python3-sphinxcontrib.jquery python3-sympy
282s   python3-threadpoolctl python3-tk python3-toml python3-tqdm python3-tz
282s   python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-dev
282s   python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk
282s   rpcsvc-proto sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5
282s   unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
282s   zlib1g-dev
282s Suggested packages:
282s   autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales
282s   cpp-14-doc cython-doc dh-make flit fonts-freefont-otf | fonts-freefont-ttf
282s   fonts-texgyre gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
282s   gdb-arm-linux-gnueabihf gettext-doc libasprintf-dev libgettextpo-dev
282s   libc-devtools glibc-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix
282s   libjs-mathjax-doc liblcms2-utils libstdc++-14-doc tcl8.6 tk8.6 libtool-doc
282s   gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl bwa clustalo
282s   clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank
282s   probcons python3-mysqldb python3-rdflib python3-psycopg2 raxml samtools
282s   t-coffee wise python3-pip python3-venv python-build-doc python-cycler-doc
282s   docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
282s   texlive-latex-base texlive-latex-recommended python-gsd-doc python-h5py-doc
282s   python-hypothesis-doc python-installer-doc python-joblib-doc
282s   python-latexcodec-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
282s   fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
282s   python-matplotlib-doc python3-cairocffi python3-gi-cairo python3-gobject
282s   python3-pyqt5 python3-sip python3-tornado texlive-extra-utils
282s   texlive-latex-extra python-mpmath-doc python3-gmpy2 jupyter python3-gdal
282s   python3-pydot python3-pygraphviz gfortran python-numpy-doc python-pandas-doc
282s   python3-statsmodels python-pil-doc python-pybtex-doc
282s   python-pybtex-docutils-doc pdf-viewer python3-egenix-mxtexttools
282s   python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap
282s   python-sklearn-doc python3-stemmer python-sortedcontainers-doc dvisvgm
282s   fonts-freefont-otf imagemagick-6.q16 latexmk sphinx-doc tex-gyre
282s   texlive-fonts-extra texlive-fonts-recommended texlive-plain-generic
282s   python-sphinxcontrib.bibtex-doc python-sympy-doc tix python3-tk-dbg
282s   python3.13-venv python3.13-doc binfmt-support sgml-base-doc
282s Recommended packages:
282s   manpages manpages-dev libarchive-cpio-perl javascript-common libjson-xs-perl
282s   libltdl-dev libmail-sendmail-perl python-biopython-doc ncbi-blast+
282s   libpaper-utils python3-click python3-simplejson python3-psutil python3-bs4
282s   python3-cssselect python3-html5lib python3-bottleneck python3-numexpr
282s   python3-odf python3-openpyxl python3-tables python3-olefile
282s   fonts-dejavu-extra isympy-common
282s The following NEW packages will be installed:
282s   autoconf automake autopkgtest-satdep autopoint autotools-dev blt
282s   build-essential cpp cpp-14 cpp-14-arm-linux-gnueabihf
282s   cpp-arm-linux-gnueabihf cython3 debhelper debugedit dh-autoreconf dh-python
282s   dh-strip-nondeterminism docutils-common dwz fontconfig-config
282s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome fonts-lato fonts-lyx
282s   fonts-mathjax fonts-urw-base35 g++ g++-14 g++-14-arm-linux-gnueabihf
282s   g++-arm-linux-gnueabihf gcc gcc-14 gcc-14-arm-linux-gnueabihf
282s   gcc-arm-linux-gnueabihf gettext intltool-debian libaec0 libarchive-zip-perl
282s   libasan8 libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
282s   libdebhelper-perl libdeflate0 libexpat1-dev libfile-stripnondeterminism-perl
282s   libfontconfig1 libfontenc1 libfreetype6 libgcc-14-dev libgfortran5 libgomp1
282s   libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64
282s   libimagequant0 libisl23 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery
282s   libjs-jquery-ui libjs-mathjax libjs-sphinxdoc libjs-underscore libjson-perl
282s   liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libmpc3 libnetcdf19t64
282s   libopenjp2-7 libpixman-1-0 libpython3-all-dev libpython3-dev
282s   libpython3.12-dev libpython3.12t64 libpython3.13 libpython3.13-dev
282s   libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0
282s   libsharpyuv0 libstdc++-14-dev libsz2 libtcl8.6 libtiff6 libtk8.6 libtool
282s   libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0
282s   libxft2 libxrender1 libxslt1.1 libxss1 linux-libc-dev m4 po-debconf
282s   pybuild-plugin-pyproject python-matplotlib-data python-mdanalysis-doc
282s   python3-alabaster python3-all python3-all-dev python3-appdirs
282s   python3-biopython python3-brotli python3-build python3-cairo python3-cftime
282s   python3-citeproc python3-contourpy python3-cycler python3-dateutil
282s   python3-decorator python3-defusedxml python3-dev python3-docutils
282s   python3-duecredit python3-fasteners python3-fonttools python3-freetype
282s   python3-fs python3-griddataformats python3-gsd python3-h5py
282s   python3-h5py-serial python3-hypothesis python3-imagesize python3-iniconfig
282s   python3-installer python3-joblib python3-kiwisolver python3-latexcodec
282s   python3-looseversion python3-lxml python3-lz4 python3-matplotlib
282s   python3-mda-xdrlib python3-mdanalysis python3-mmtf python3-monotonic
282s   python3-mpmath python3-mrcfile python3-msgpack python3-msmb-theme
282s   python3-netcdf4 python3-networkx python3-numpy python3-packaging
282s   python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
282s   python3-pluggy python3-pybtex python3-pybtex-docutils
282s   python3-pyproject-hooks python3-pytest python3-reportlab python3-rlpycairo
282s   python3-roman python3-scipy python3-seaborn python3-six python3-sklearn
282s   python3-sklearn-lib python3-snowballstemmer python3-sortedcontainers
282s   python3-sphinx python3-sphinx-rtd-theme python3-sphinx-sitemap
282s   python3-sphinxcontrib.bibtex python3-sphinxcontrib.jquery python3-sympy
282s   python3-threadpoolctl python3-tk python3-toml python3-tqdm python3-tz
282s   python3-ufolib2 python3-unicodedata2 python3-wheel python3.12-dev
282s   python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk
282s   rpcsvc-proto sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5
282s   unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
282s   zlib1g-dev
282s 0 upgraded, 213 newly installed, 0 to remove and 0 not upgraded.
282s Need to get 199 MB/199 MB of archives.
282s After this operation, 761 MB of additional disk space will be used.
282s Get:1 /tmp/autopkgtest.Bg8EJw/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [1016 B]
282s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-lato all 2.015-1 [2781 kB]
283s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB]
283s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB]
283s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf sgml-base all 1.31 [11.4 kB]
283s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf m4 armhf 1.4.19-4build1 [235 kB]
283s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf autoconf all 2.72-3 [382 kB]
283s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf autotools-dev all 20220109.1 [44.9 kB]
283s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf automake all 1:1.16.5-1.3ubuntu1 [558 kB]
283s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf autopoint all 0.22.5-2 [616 kB]
283s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [909 kB]
283s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB]
283s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
283s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
283s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB]
283s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB]
283s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
283s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB]
283s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB]
284s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB]
284s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB]
284s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB]
284s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB]
284s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B]
284s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.15-1 [685 kB]
284s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7build1 [525 kB]
284s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-7build1 [4840 B]
284s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libc-dev-bin armhf 2.40-1ubuntu3 [19.2 kB]
284s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.11.0-8.8 [1628 kB]
284s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.36-4build1 [120 kB]
284s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB]
284s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libc6-dev armhf 2.40-1ubuntu3 [1370 kB]
284s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB]
284s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB]
284s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-8ubuntu1 [9219 kB]
284s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-8ubuntu1 [1032 B]
284s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [5464 B]
284s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.1.0-2ubuntu1 [22.4 kB]
284s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 14.2.0-8ubuntu1 [43.3 kB]
284s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB]
284s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 14.2.0-8ubuntu1 [2901 kB]
284s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 14.2.0-8ubuntu1 [1150 kB]
284s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-8ubuntu1 [897 kB]
284s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-8ubuntu1 [18.0 MB]
285s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14 armhf 14.2.0-8ubuntu1 [498 kB]
285s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [1222 B]
285s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf gcc armhf 4:14.1.0-2ubuntu1 [5002 B]
285s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-8ubuntu1 [2569 kB]
285s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-8ubuntu1 [10.5 MB]
285s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14 armhf 14.2.0-8ubuntu1 [19.9 kB]
285s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf g++-arm-linux-gnueabihf armhf 4:14.1.0-2ubuntu1 [968 B]
285s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf g++ armhf 4:14.1.0-2ubuntu1 [1084 B]
285s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf build-essential armhf 12.10ubuntu1 [4928 B]
285s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf cython3 armhf 3.0.11+dfsg-1ubuntu1 [2391 kB]
285s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
285s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libtool all 2.4.7-7build1 [166 kB]
285s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf dh-autoreconf all 20 [16.1 kB]
285s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB]
285s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
285s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf dh-strip-nondeterminism all 1.14.0-1 [5058 B]
285s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf debugedit armhf 1:5.1-1 [46.5 kB]
285s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf dwz armhf 0.15-1build6 [116 kB]
285s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf gettext armhf 0.22.5-2 [995 kB]
285s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB]
285s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf po-debconf all 1.0.21+nmu1 [233 kB]
285s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf debhelper all 13.20ubuntu1 [893 kB]
285s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf dh-python all 6.20241024 [112 kB]
285s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf xml-core all 0.19 [20.3 kB]
285s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf docutils-common all 0.21.2+dfsg-2 [131 kB]
285s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
285s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.2.1-1 [171 kB]
285s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
285s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB]
285s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB]
286s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB]
286s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB]
286s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B]
286s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB]
286s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB]
286s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libexpat1-dev armhf 2.6.2-2 [121 kB]
286s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB]
286s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB]
286s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB]
286s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B]
286s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB]
286s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB]
286s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB]
286s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB]
286s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
286s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
286s Get:91 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
286s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
286s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-sphinxdoc all 7.4.7-4 [158 kB]
286s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-perl all 4.10000-1 [81.9 kB]
286s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB]
286s Get:96 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB]
286s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB]
286s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB]
286s Get:99 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B]
286s Get:100 http://ftpmaster.internal/ubuntu plucky/universe armhf libnetcdf19t64 armhf 1:4.9.2-6ubuntu1 [419 kB]
286s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12t64 armhf 3.12.7-3 [2075 kB]
286s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1ubuntu1 [880 kB]
286s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-dev armhf 3.12.7-3 [4344 kB]
287s Get:104 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-dev armhf 3.12.7-1 [10.3 kB]
287s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB]
287s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13 armhf 3.13.0-2 [2045 kB]
287s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-dev armhf 3.13.0-2 [4254 kB]
287s Get:108 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-all-dev armhf 3.12.7-1 [916 B]
287s Get:109 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB]
287s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB]
287s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB]
287s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB]
287s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB]
287s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB]
287s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB]
287s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB]
287s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu1 [150 kB]
287s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.1-1 [41.4 kB]
287s Get:119 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
287s Get:120 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-toml all 0.10.2-1 [16.5 kB]
287s Get:121 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-wheel all 0.44.0-1 [54.2 kB]
287s Get:122 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-build all 1.2.2-1 [31.0 kB]
287s Get:123 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
287s Get:124 http://ftpmaster.internal/ubuntu plucky/universe armhf pybuild-plugin-pyproject all 6.20241024 [1728 B]
287s Get:125 http://ftpmaster.internal/ubuntu plucky/universe armhf python-matplotlib-data all 3.8.3-3 [2928 kB]
287s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
287s Get:127 http://ftpmaster.internal/ubuntu plucky/universe armhf python-mdanalysis-doc all 2.7.0-5 [2323 kB]
287s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB]
287s Get:129 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B]
287s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-dev armhf 3.12.7-3 [505 kB]
287s Get:131 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-dev armhf 3.12.7-1 [26.7 kB]
287s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-dev armhf 3.13.0-2 [507 kB]
287s Get:133 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all-dev armhf 3.12.7-1 [914 B]
287s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-appdirs all 1.4.4-4 [10.9 kB]
287s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB]
287s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.7-3 [112 kB]
287s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-tk armhf 3.13.0-2 [103 kB]
288s Get:138 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-tk armhf 3.12.7-1 [9752 B]
288s Get:139 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 10.4.0-1ubuntu1 [8848 B]
288s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB]
288s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu1 [428 kB]
288s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cairo armhf 1.26.1-2 [114 kB]
288s Get:143 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-freetype all 2.5.1-1 [92.3 kB]
288s Get:144 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B]
288s Get:145 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-reportlab all 4.2.5-1 [1107 kB]
288s Get:146 http://ftpmaster.internal/ubuntu plucky/universe armhf w3c-sgml-lib all 1.3-3 [280 kB]
288s Get:147 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-biopython armhf 1.84+dfsg-4 [1666 kB]
288s Get:148 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build2 [321 kB]
288s Get:149 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cftime armhf 1.6.4-1 [202 kB]
288s Get:150 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.0-1 [1234 kB]
288s Get:151 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-citeproc all 0.6.0-3 [98.4 kB]
288s Get:152 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.0-2 [192 kB]
288s Get:153 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B]
288s Get:154 http://ftpmaster.internal/ubuntu plucky/main armhf python3-six all 1.16.0-7 [13.1 kB]
288s Get:155 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dateutil all 2.9.0-2 [80.3 kB]
288s Get:156 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB]
288s Get:157 http://ftpmaster.internal/ubuntu plucky/main armhf python3-defusedxml all 0.7.1-2 [42.0 kB]
288s Get:158 http://ftpmaster.internal/ubuntu plucky/main armhf python3-roman all 4.2-1 [10.0 kB]
288s Get:159 http://ftpmaster.internal/ubuntu plucky/main armhf python3-docutils all 0.21.2+dfsg-2 [409 kB]
288s Get:160 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-looseversion all 1.3.0-3 [8354 B]
288s Get:161 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-duecredit all 0.10.2-2 [66.0 kB]
288s Get:162 http://ftpmaster.internal/ubuntu plucky/main armhf python3-monotonic all 1.6-2 [5732 B]
288s Get:163 http://ftpmaster.internal/ubuntu plucky/main armhf python3-fasteners all 0.18-2 [12.5 kB]
288s Get:164 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB]
288s Get:165 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB]
288s Get:166 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB]
288s Get:167 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB]
288s Get:168 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2024.1-2 [31.4 kB]
288s Get:169 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-4 [91.3 kB]
288s Get:170 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.0.2+dfsg-1build4 [24.8 kB]
288s Get:171 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-unicodedata2 armhf 15.1.0+ds-1build1 [361 kB]
288s Get:172 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB]
289s Get:173 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.46.0-1build2 [1402 kB]
289s Get:174 http://ftpmaster.internal/ubuntu plucky/main armhf sphinx-rtd-theme-common all 3.0.1+dfsg-1 [1012 kB]
289s Get:175 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mrcfile all 1.5.3-3 [114 kB]
289s Get:176 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-griddataformats all 1.0.2-2 [2107 kB]
289s Get:177 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-gsd armhf 3.3.0-1 [197 kB]
289s Get:178 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py-serial armhf 3.11.0-5ubuntu1 [1061 kB]
289s Get:179 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py all 3.11.0-5ubuntu1 [7974 B]
289s Get:180 http://ftpmaster.internal/ubuntu plucky/main armhf python3-sortedcontainers all 2.4.0-2 [27.6 kB]
289s Get:181 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-hypothesis all 6.116.0-1 [326 kB]
289s Get:182 http://ftpmaster.internal/ubuntu plucky/main armhf python3-imagesize all 1.4.1-1 [6844 B]
289s Get:183 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B]
289s Get:184 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-joblib all 1.3.2-5 [206 kB]
289s Get:185 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-2 [57.0 kB]
289s Get:186 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-latexcodec all 3.0.0-1 [16.6 kB]
289s Get:187 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib armhf 3.8.3-3 [4500 kB]
289s Get:188 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mda-xdrlib all 0.2.0-3 [11.4 kB]
289s Get:189 http://ftpmaster.internal/ubuntu plucky/main armhf python3-msgpack armhf 1.0.3-3build2 [76.1 kB]
289s Get:190 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mmtf all 1.1.3-1 [16.2 kB]
289s Get:191 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-threadpoolctl all 3.1.0-1 [21.3 kB]
289s Get:192 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-tqdm all 4.67.0-1 [91.6 kB]
289s Get:193 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mdanalysis armhf 2.7.0-5 [1882 kB]
289s Get:194 http://ftpmaster.internal/ubuntu plucky/main armhf sphinx-common all 7.4.7-4 [775 kB]
289s Get:195 http://ftpmaster.internal/ubuntu plucky/main armhf python3-alabaster all 0.7.16-0.1 [18.5 kB]
289s Get:196 http://ftpmaster.internal/ubuntu plucky/main armhf python3-snowballstemmer all 2.2.0-4build1 [59.8 kB]
289s Get:197 http://ftpmaster.internal/ubuntu plucky/main armhf python3-sphinx all 7.4.7-4 [593 kB]
289s Get:198 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinxcontrib.jquery all 4.1-5 [6678 B]
289s Get:199 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinx-rtd-theme all 3.0.1+dfsg-1 [23.5 kB]
289s Get:200 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-msmb-theme all 1.2.0-4 [35.4 kB]
289s Get:201 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-netcdf4 armhf 1.7.2-1 [589 kB]
289s Get:202 http://ftpmaster.internal/ubuntu plucky/main armhf python3-networkx all 3.2.1-4ubuntu1 [11.5 MB]
289s Get:203 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-5 [4728 kB]
290s Get:204 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas all 2.2.3+dfsg-5 [3112 kB]
290s Get:205 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB]
290s Get:206 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pybtex all 0.24.0-4 [70.0 kB]
290s Get:207 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pybtex-docutils all 1.0.2-1 [7176 B]
290s Get:208 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB]
290s Get:209 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-seaborn all 0.13.2-4 [225 kB]
290s Get:210 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sklearn-lib armhf 1.4.2+dfsg-6 [3751 kB]
290s Get:211 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sklearn all 1.4.2+dfsg-6 [2257 kB]
290s Get:212 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinx-sitemap all 2.6.0-1 [6674 B]
290s Get:213 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sphinxcontrib.bibtex all 2.6.2-1 [25.2 kB]
291s Fetched 199 MB in 8s (24.1 MB/s)
291s Selecting previously unselected package fonts-lato.
291s (Reading database ... 
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291s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ...
291s Unpacking fonts-lato (2.015-1) ...
291s Selecting previously unselected package libpython3.13-minimal:armhf.
291s Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_armhf.deb ...
291s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ...
291s Selecting previously unselected package python3.13-minimal.
291s Preparing to unpack .../002-python3.13-minimal_3.13.0-2_armhf.deb ...
291s Unpacking python3.13-minimal (3.13.0-2) ...
292s Selecting previously unselected package sgml-base.
292s Preparing to unpack .../003-sgml-base_1.31_all.deb ...
292s Unpacking sgml-base (1.31) ...
292s Selecting previously unselected package m4.
292s Preparing to unpack .../004-m4_1.4.19-4build1_armhf.deb ...
292s Unpacking m4 (1.4.19-4build1) ...
292s Selecting previously unselected package autoconf.
292s Preparing to unpack .../005-autoconf_2.72-3_all.deb ...
292s Unpacking autoconf (2.72-3) ...
292s Selecting previously unselected package autotools-dev.
292s Preparing to unpack .../006-autotools-dev_20220109.1_all.deb ...
292s Unpacking autotools-dev (20220109.1) ...
292s Selecting previously unselected package automake.
292s Preparing to unpack .../007-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
292s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
292s Selecting previously unselected package autopoint.
292s Preparing to unpack .../008-autopoint_0.22.5-2_all.deb ...
292s Unpacking autopoint (0.22.5-2) ...
292s Selecting previously unselected package libtcl8.6:armhf.
292s Preparing to unpack .../009-libtcl8.6_8.6.15+dfsg-2_armhf.deb ...
292s Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ...
292s Selecting previously unselected package libfreetype6:armhf.
292s Preparing to unpack .../010-libfreetype6_2.13.3+dfsg-1_armhf.deb ...
292s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ...
292s Selecting previously unselected package fonts-dejavu-mono.
292s Preparing to unpack .../011-fonts-dejavu-mono_2.37-8_all.deb ...
292s Unpacking fonts-dejavu-mono (2.37-8) ...
292s Selecting previously unselected package fonts-dejavu-core.
292s Preparing to unpack .../012-fonts-dejavu-core_2.37-8_all.deb ...
292s Unpacking fonts-dejavu-core (2.37-8) ...
292s Selecting previously unselected package libfontenc1:armhf.
292s Preparing to unpack .../013-libfontenc1_1%3a1.1.8-1build1_armhf.deb ...
292s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ...
292s Selecting previously unselected package x11-common.
292s Preparing to unpack .../014-x11-common_1%3a7.7+23ubuntu3_all.deb ...
292s Unpacking x11-common (1:7.7+23ubuntu3) ...
292s Selecting previously unselected package xfonts-encodings.
292s Preparing to unpack .../015-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
292s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
292s Selecting previously unselected package xfonts-utils.
292s Preparing to unpack .../016-xfonts-utils_1%3a7.7+7_armhf.deb ...
292s Unpacking xfonts-utils (1:7.7+7) ...
292s Selecting previously unselected package fonts-urw-base35.
292s Preparing to unpack .../017-fonts-urw-base35_20200910-8_all.deb ...
292s Unpacking fonts-urw-base35 (20200910-8) ...
292s Selecting previously unselected package fontconfig-config.
292s Preparing to unpack .../018-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ...
293s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
293s Selecting previously unselected package libfontconfig1:armhf.
293s Preparing to unpack .../019-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ...
293s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ...
293s Selecting previously unselected package libxrender1:armhf.
293s Preparing to unpack .../020-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ...
293s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ...
293s Selecting previously unselected package libxft2:armhf.
293s Preparing to unpack .../021-libxft2_2.3.6-1build1_armhf.deb ...
293s Unpacking libxft2:armhf (2.3.6-1build1) ...
293s Selecting previously unselected package libxss1:armhf.
293s Preparing to unpack .../022-libxss1_1%3a1.2.3-1build3_armhf.deb ...
293s Unpacking libxss1:armhf (1:1.2.3-1build3) ...
293s Selecting previously unselected package libtk8.6:armhf.
293s Preparing to unpack .../023-libtk8.6_8.6.15-1_armhf.deb ...
293s Unpacking libtk8.6:armhf (8.6.15-1) ...
293s Selecting previously unselected package tk8.6-blt2.5.
293s Preparing to unpack .../024-tk8.6-blt2.5_2.5.3+dfsg-7build1_armhf.deb ...
293s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
293s Selecting previously unselected package blt.
293s Preparing to unpack .../025-blt_2.5.3+dfsg-7build1_armhf.deb ...
293s Unpacking blt (2.5.3+dfsg-7build1) ...
293s Selecting previously unselected package libc-dev-bin.
293s Preparing to unpack .../026-libc-dev-bin_2.40-1ubuntu3_armhf.deb ...
293s Unpacking libc-dev-bin (2.40-1ubuntu3) ...
293s Selecting previously unselected package linux-libc-dev:armhf.
293s Preparing to unpack .../027-linux-libc-dev_6.11.0-8.8_armhf.deb ...
293s Unpacking linux-libc-dev:armhf (6.11.0-8.8) ...
293s Selecting previously unselected package libcrypt-dev:armhf.
293s Preparing to unpack .../028-libcrypt-dev_1%3a4.4.36-4build1_armhf.deb ...
293s Unpacking libcrypt-dev:armhf (1:4.4.36-4build1) ...
293s Selecting previously unselected package rpcsvc-proto.
293s Preparing to unpack .../029-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ...
293s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ...
293s Selecting previously unselected package libc6-dev:armhf.
293s Preparing to unpack .../030-libc6-dev_2.40-1ubuntu3_armhf.deb ...
293s Unpacking libc6-dev:armhf (2.40-1ubuntu3) ...
293s Selecting previously unselected package libisl23:armhf.
293s Preparing to unpack .../031-libisl23_0.27-1_armhf.deb ...
293s Unpacking libisl23:armhf (0.27-1) ...
293s Selecting previously unselected package libmpc3:armhf.
293s Preparing to unpack .../032-libmpc3_1.3.1-1build2_armhf.deb ...
293s Unpacking libmpc3:armhf (1.3.1-1build2) ...
293s Selecting previously unselected package cpp-14-arm-linux-gnueabihf.
293s Preparing to unpack .../033-cpp-14-arm-linux-gnueabihf_14.2.0-8ubuntu1_armhf.deb ...
293s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-8ubuntu1) ...
294s Selecting previously unselected package cpp-14.
294s Preparing to unpack .../034-cpp-14_14.2.0-8ubuntu1_armhf.deb ...
294s Unpacking cpp-14 (14.2.0-8ubuntu1) ...
294s Selecting previously unselected package cpp-arm-linux-gnueabihf.
294s Preparing to unpack .../035-cpp-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ...
294s Unpacking cpp-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ...
294s Selecting previously unselected package cpp.
294s Preparing to unpack .../036-cpp_4%3a14.1.0-2ubuntu1_armhf.deb ...
294s Unpacking cpp (4:14.1.0-2ubuntu1) ...
294s Selecting previously unselected package libcc1-0:armhf.
294s Preparing to unpack .../037-libcc1-0_14.2.0-8ubuntu1_armhf.deb ...
294s Unpacking libcc1-0:armhf (14.2.0-8ubuntu1) ...
294s Selecting previously unselected package libgomp1:armhf.
294s Preparing to unpack .../038-libgomp1_14.2.0-8ubuntu1_armhf.deb ...
294s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ...
294s Selecting previously unselected package libasan8:armhf.
294s Preparing to unpack .../039-libasan8_14.2.0-8ubuntu1_armhf.deb ...
294s Unpacking libasan8:armhf (14.2.0-8ubuntu1) ...
294s Selecting previously unselected package libubsan1:armhf.
294s Preparing to unpack .../040-libubsan1_14.2.0-8ubuntu1_armhf.deb ...
294s Unpacking libubsan1:armhf (14.2.0-8ubuntu1) ...
294s Selecting previously unselected package libgcc-14-dev:armhf.
294s Preparing to unpack .../041-libgcc-14-dev_14.2.0-8ubuntu1_armhf.deb ...
294s Unpacking libgcc-14-dev:armhf (14.2.0-8ubuntu1) ...
294s Selecting previously unselected package gcc-14-arm-linux-gnueabihf.
294s Preparing to unpack .../042-gcc-14-arm-linux-gnueabihf_14.2.0-8ubuntu1_armhf.deb ...
294s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-8ubuntu1) ...
294s Selecting previously unselected package gcc-14.
295s Preparing to unpack .../043-gcc-14_14.2.0-8ubuntu1_armhf.deb ...
295s Unpacking gcc-14 (14.2.0-8ubuntu1) ...
295s Selecting previously unselected package gcc-arm-linux-gnueabihf.
295s Preparing to unpack .../044-gcc-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ...
295s Unpacking gcc-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ...
295s Selecting previously unselected package gcc.
295s Preparing to unpack .../045-gcc_4%3a14.1.0-2ubuntu1_armhf.deb ...
295s Unpacking gcc (4:14.1.0-2ubuntu1) ...
295s Selecting previously unselected package libstdc++-14-dev:armhf.
295s Preparing to unpack .../046-libstdc++-14-dev_14.2.0-8ubuntu1_armhf.deb ...
295s Unpacking libstdc++-14-dev:armhf (14.2.0-8ubuntu1) ...
295s Selecting previously unselected package g++-14-arm-linux-gnueabihf.
295s Preparing to unpack .../047-g++-14-arm-linux-gnueabihf_14.2.0-8ubuntu1_armhf.deb ...
295s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-8ubuntu1) ...
295s Selecting previously unselected package g++-14.
295s Preparing to unpack .../048-g++-14_14.2.0-8ubuntu1_armhf.deb ...
295s Unpacking g++-14 (14.2.0-8ubuntu1) ...
295s Selecting previously unselected package g++-arm-linux-gnueabihf.
295s Preparing to unpack .../049-g++-arm-linux-gnueabihf_4%3a14.1.0-2ubuntu1_armhf.deb ...
295s Unpacking g++-arm-linux-gnueabihf (4:14.1.0-2ubuntu1) ...
295s Selecting previously unselected package g++.
295s Preparing to unpack .../050-g++_4%3a14.1.0-2ubuntu1_armhf.deb ...
295s Unpacking g++ (4:14.1.0-2ubuntu1) ...
295s Selecting previously unselected package build-essential.
295s Preparing to unpack .../051-build-essential_12.10ubuntu1_armhf.deb ...
295s Unpacking build-essential (12.10ubuntu1) ...
295s Selecting previously unselected package cython3.
295s Preparing to unpack .../052-cython3_3.0.11+dfsg-1ubuntu1_armhf.deb ...
295s Unpacking cython3 (3.0.11+dfsg-1ubuntu1) ...
295s Selecting previously unselected package libdebhelper-perl.
295s Preparing to unpack .../053-libdebhelper-perl_13.20ubuntu1_all.deb ...
295s Unpacking libdebhelper-perl (13.20ubuntu1) ...
295s Selecting previously unselected package libtool.
295s Preparing to unpack .../054-libtool_2.4.7-7build1_all.deb ...
295s Unpacking libtool (2.4.7-7build1) ...
295s Selecting previously unselected package dh-autoreconf.
295s Preparing to unpack .../055-dh-autoreconf_20_all.deb ...
295s Unpacking dh-autoreconf (20) ...
295s Selecting previously unselected package libarchive-zip-perl.
295s Preparing to unpack .../056-libarchive-zip-perl_1.68-1_all.deb ...
295s Unpacking libarchive-zip-perl (1.68-1) ...
295s Selecting previously unselected package libfile-stripnondeterminism-perl.
295s Preparing to unpack .../057-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
295s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
296s Selecting previously unselected package dh-strip-nondeterminism.
296s Preparing to unpack .../058-dh-strip-nondeterminism_1.14.0-1_all.deb ...
296s Unpacking dh-strip-nondeterminism (1.14.0-1) ...
296s Selecting previously unselected package debugedit.
296s Preparing to unpack .../059-debugedit_1%3a5.1-1_armhf.deb ...
296s Unpacking debugedit (1:5.1-1) ...
296s Selecting previously unselected package dwz.
296s Preparing to unpack .../060-dwz_0.15-1build6_armhf.deb ...
296s Unpacking dwz (0.15-1build6) ...
296s Selecting previously unselected package gettext.
296s Preparing to unpack .../061-gettext_0.22.5-2_armhf.deb ...
296s Unpacking gettext (0.22.5-2) ...
296s Selecting previously unselected package intltool-debian.
296s Preparing to unpack .../062-intltool-debian_0.35.0+20060710.6_all.deb ...
296s Unpacking intltool-debian (0.35.0+20060710.6) ...
296s Selecting previously unselected package po-debconf.
296s Preparing to unpack .../063-po-debconf_1.0.21+nmu1_all.deb ...
296s Unpacking po-debconf (1.0.21+nmu1) ...
296s Selecting previously unselected package debhelper.
296s Preparing to unpack .../064-debhelper_13.20ubuntu1_all.deb ...
296s Unpacking debhelper (13.20ubuntu1) ...
296s Selecting previously unselected package dh-python.
296s Preparing to unpack .../065-dh-python_6.20241024_all.deb ...
296s Unpacking dh-python (6.20241024) ...
296s Selecting previously unselected package xml-core.
296s Preparing to unpack .../066-xml-core_0.19_all.deb ...
296s Unpacking xml-core (0.19) ...
296s Selecting previously unselected package docutils-common.
296s Preparing to unpack .../067-docutils-common_0.21.2+dfsg-2_all.deb ...
296s Unpacking docutils-common (0.21.2+dfsg-2) ...
296s Selecting previously unselected package fonts-font-awesome.
296s Preparing to unpack .../068-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
296s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
296s Selecting previously unselected package fonts-lyx.
296s Preparing to unpack .../069-fonts-lyx_2.4.2.1-1_all.deb ...
296s Unpacking fonts-lyx (2.4.2.1-1) ...
296s Selecting previously unselected package fonts-mathjax.
296s Preparing to unpack .../070-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
296s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
296s Selecting previously unselected package libaec0:armhf.
296s Preparing to unpack .../071-libaec0_1.1.3-1_armhf.deb ...
296s Unpacking libaec0:armhf (1.1.3-1) ...
296s Selecting previously unselected package libblas3:armhf.
296s Preparing to unpack .../072-libblas3_3.12.0-3build2_armhf.deb ...
296s Unpacking libblas3:armhf (3.12.0-3build2) ...
296s Selecting previously unselected package libpixman-1-0:armhf.
296s Preparing to unpack .../073-libpixman-1-0_0.44.0-3_armhf.deb ...
296s Unpacking libpixman-1-0:armhf (0.44.0-3) ...
296s Selecting previously unselected package libxcb-render0:armhf.
296s Preparing to unpack .../074-libxcb-render0_1.17.0-2_armhf.deb ...
296s Unpacking libxcb-render0:armhf (1.17.0-2) ...
296s Selecting previously unselected package libxcb-shm0:armhf.
296s Preparing to unpack .../075-libxcb-shm0_1.17.0-2_armhf.deb ...
296s Unpacking libxcb-shm0:armhf (1.17.0-2) ...
296s Selecting previously unselected package libcairo2:armhf.
296s Preparing to unpack .../076-libcairo2_1.18.2-2_armhf.deb ...
296s Unpacking libcairo2:armhf (1.18.2-2) ...
296s Selecting previously unselected package libdeflate0:armhf.
296s Preparing to unpack .../077-libdeflate0_1.22-1_armhf.deb ...
296s Unpacking libdeflate0:armhf (1.22-1) ...
296s Selecting previously unselected package libexpat1-dev:armhf.
297s Preparing to unpack .../078-libexpat1-dev_2.6.2-2_armhf.deb ...
297s Unpacking libexpat1-dev:armhf (2.6.2-2) ...
297s Selecting previously unselected package libgfortran5:armhf.
297s Preparing to unpack .../079-libgfortran5_14.2.0-8ubuntu1_armhf.deb ...
297s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ...
297s Selecting previously unselected package libgraphite2-3:armhf.
297s Preparing to unpack .../080-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ...
297s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ...
297s Selecting previously unselected package libharfbuzz0b:armhf.
297s Preparing to unpack .../081-libharfbuzz0b_10.0.1-1_armhf.deb ...
297s Unpacking libharfbuzz0b:armhf (10.0.1-1) ...
297s Selecting previously unselected package libsz2:armhf.
297s Preparing to unpack .../082-libsz2_1.1.3-1_armhf.deb ...
297s Unpacking libsz2:armhf (1.1.3-1) ...
297s Selecting previously unselected package libhdf5-103-1t64:armhf.
297s Preparing to unpack .../083-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ...
297s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ...
297s Selecting previously unselected package libhdf5-hl-100t64:armhf.
297s Preparing to unpack .../084-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ...
297s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ...
297s Selecting previously unselected package libimagequant0:armhf.
297s Preparing to unpack .../085-libimagequant0_2.18.0-1build1_armhf.deb ...
297s Unpacking libimagequant0:armhf (2.18.0-1build1) ...
297s Selecting previously unselected package libjpeg-turbo8:armhf.
297s Preparing to unpack .../086-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ...
297s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ...
297s Selecting previously unselected package libjpeg8:armhf.
297s Preparing to unpack .../087-libjpeg8_8c-2ubuntu11_armhf.deb ...
297s Unpacking libjpeg8:armhf (8c-2ubuntu11) ...
299s Selecting previously unselected package libjs-jquery.
299s Preparing to unpack .../088-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
299s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
299s Selecting previously unselected package libjs-jquery-ui.
299s Preparing to unpack .../089-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
299s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
299s Selecting previously unselected package libjs-underscore.
299s Preparing to unpack .../090-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
299s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
299s Selecting previously unselected package libjs-sphinxdoc.
299s Preparing to unpack .../091-libjs-sphinxdoc_7.4.7-4_all.deb ...
299s Unpacking libjs-sphinxdoc (7.4.7-4) ...
299s Selecting previously unselected package libjson-perl.
299s Preparing to unpack .../092-libjson-perl_4.10000-1_all.deb ...
299s Unpacking libjson-perl (4.10000-1) ...
299s Selecting previously unselected package liblapack3:armhf.
299s Preparing to unpack .../093-liblapack3_3.12.0-3build2_armhf.deb ...
299s Unpacking liblapack3:armhf (3.12.0-3build2) ...
299s Selecting previously unselected package liblbfgsb0:armhf.
299s Preparing to unpack .../094-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ...
299s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ...
299s Selecting previously unselected package liblcms2-2:armhf.
299s Preparing to unpack .../095-liblcms2-2_2.16-2_armhf.deb ...
299s Unpacking liblcms2-2:armhf (2.16-2) ...
299s Selecting previously unselected package liblerc4:armhf.
299s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ...
299s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ...
299s Selecting previously unselected package liblzf1:armhf.
299s Preparing to unpack .../097-liblzf1_3.6-4_armhf.deb ...
299s Unpacking liblzf1:armhf (3.6-4) ...
299s Selecting previously unselected package libnetcdf19t64:armhf.
299s Preparing to unpack .../098-libnetcdf19t64_1%3a4.9.2-6ubuntu1_armhf.deb ...
299s Unpacking libnetcdf19t64:armhf (1:4.9.2-6ubuntu1) ...
299s Selecting previously unselected package libpython3.12t64:armhf.
299s Preparing to unpack .../099-libpython3.12t64_3.12.7-3_armhf.deb ...
299s Unpacking libpython3.12t64:armhf (3.12.7-3) ...
299s Selecting previously unselected package zlib1g-dev:armhf.
299s Preparing to unpack .../100-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_armhf.deb ...
299s Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
299s Selecting previously unselected package libpython3.12-dev:armhf.
299s Preparing to unpack .../101-libpython3.12-dev_3.12.7-3_armhf.deb ...
299s Unpacking libpython3.12-dev:armhf (3.12.7-3) ...
299s Selecting previously unselected package libpython3-dev:armhf.
299s Preparing to unpack .../102-libpython3-dev_3.12.7-1_armhf.deb ...
299s Unpacking libpython3-dev:armhf (3.12.7-1) ...
299s Selecting previously unselected package libpython3.13-stdlib:armhf.
299s Preparing to unpack .../103-libpython3.13-stdlib_3.13.0-2_armhf.deb ...
299s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ...
299s Selecting previously unselected package libpython3.13:armhf.
299s Preparing to unpack .../104-libpython3.13_3.13.0-2_armhf.deb ...
299s Unpacking libpython3.13:armhf (3.13.0-2) ...
299s Selecting previously unselected package libpython3.13-dev:armhf.
299s Preparing to unpack .../105-libpython3.13-dev_3.13.0-2_armhf.deb ...
299s Unpacking libpython3.13-dev:armhf (3.13.0-2) ...
299s Selecting previously unselected package libpython3-all-dev:armhf.
299s Preparing to unpack .../106-libpython3-all-dev_3.12.7-1_armhf.deb ...
299s Unpacking libpython3-all-dev:armhf (3.12.7-1) ...
299s Selecting previously unselected package libqhull-r8.0:armhf.
299s Preparing to unpack .../107-libqhull-r8.0_2020.2-6build1_armhf.deb ...
299s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ...
299s Selecting previously unselected package libraqm0:armhf.
299s Preparing to unpack .../108-libraqm0_0.10.1-1build1_armhf.deb ...
299s Unpacking libraqm0:armhf (0.10.1-1build1) ...
299s Selecting previously unselected package libsharpyuv0:armhf.
299s Preparing to unpack .../109-libsharpyuv0_1.4.0-0.1_armhf.deb ...
299s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ...
299s Selecting previously unselected package libjbig0:armhf.
299s Preparing to unpack .../110-libjbig0_2.1-6.1ubuntu2_armhf.deb ...
299s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ...
299s Selecting previously unselected package libwebp7:armhf.
299s Preparing to unpack .../111-libwebp7_1.4.0-0.1_armhf.deb ...
299s Unpacking libwebp7:armhf (1.4.0-0.1) ...
299s Selecting previously unselected package libtiff6:armhf.
299s Preparing to unpack .../112-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ...
299s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ...
299s Selecting previously unselected package libwebpdemux2:armhf.
299s Preparing to unpack .../113-libwebpdemux2_1.4.0-0.1_armhf.deb ...
299s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ...
299s Selecting previously unselected package libwebpmux3:armhf.
299s Preparing to unpack .../114-libwebpmux3_1.4.0-0.1_armhf.deb ...
299s Unpacking libwebpmux3:armhf (1.4.0-0.1) ...
299s Selecting previously unselected package libxslt1.1:armhf.
299s Preparing to unpack .../115-libxslt1.1_1.1.39-0exp1ubuntu1_armhf.deb ...
299s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ...
299s Selecting previously unselected package python3-packaging.
299s Preparing to unpack .../116-python3-packaging_24.1-1_all.deb ...
299s Unpacking python3-packaging (24.1-1) ...
299s Selecting previously unselected package python3-pyproject-hooks.
299s Preparing to unpack .../117-python3-pyproject-hooks_1.2.0-1_all.deb ...
299s Unpacking python3-pyproject-hooks (1.2.0-1) ...
299s Selecting previously unselected package python3-toml.
299s Preparing to unpack .../118-python3-toml_0.10.2-1_all.deb ...
299s Unpacking python3-toml (0.10.2-1) ...
299s Selecting previously unselected package python3-wheel.
299s Preparing to unpack .../119-python3-wheel_0.44.0-1_all.deb ...
299s Unpacking python3-wheel (0.44.0-1) ...
299s Selecting previously unselected package python3-build.
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299s Unpacking python3-build (1.2.2-1) ...
299s Selecting previously unselected package python3-installer.
299s Preparing to unpack .../121-python3-installer_0.7.0+dfsg1-3_all.deb ...
299s Unpacking python3-installer (0.7.0+dfsg1-3) ...
299s Selecting previously unselected package pybuild-plugin-pyproject.
299s Preparing to unpack .../122-pybuild-plugin-pyproject_6.20241024_all.deb ...
299s Unpacking pybuild-plugin-pyproject (6.20241024) ...
299s Selecting previously unselected package python-matplotlib-data.
299s Preparing to unpack .../123-python-matplotlib-data_3.8.3-3_all.deb ...
299s Unpacking python-matplotlib-data (3.8.3-3) ...
299s Selecting previously unselected package libjs-mathjax.
299s Preparing to unpack .../124-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
299s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
300s Selecting previously unselected package python-mdanalysis-doc.
300s Preparing to unpack .../125-python-mdanalysis-doc_2.7.0-5_all.deb ...
300s Unpacking python-mdanalysis-doc (2.7.0-5) ...
300s Selecting previously unselected package python3.13.
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300s Unpacking python3.13 (3.13.0-2) ...
300s Selecting previously unselected package python3-all.
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300s Unpacking python3-all (3.12.7-1) ...
300s Selecting previously unselected package python3.12-dev.
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300s Unpacking python3.12-dev (3.12.7-3) ...
300s Selecting previously unselected package python3-dev.
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300s Unpacking python3-dev (3.12.7-1) ...
300s Selecting previously unselected package python3.13-dev.
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300s Unpacking python3.13-dev (3.13.0-2) ...
300s Selecting previously unselected package python3-all-dev.
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300s Unpacking python3-all-dev (3.12.7-1) ...
300s Selecting previously unselected package python3-appdirs.
300s Preparing to unpack .../132-python3-appdirs_1.4.4-4_all.deb ...
300s Unpacking python3-appdirs (1.4.4-4) ...
300s Selecting previously unselected package python3-numpy.
300s Preparing to unpack .../133-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ...
300s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
301s Selecting previously unselected package python3.12-tk.
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301s Selecting previously unselected package python3.13-tk.
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301s Selecting previously unselected package python3-tk:armhf.
301s Preparing to unpack .../136-python3-tk_3.12.7-1_armhf.deb ...
301s Unpacking python3-tk:armhf (3.12.7-1) ...
301s Selecting previously unselected package python3-pil.imagetk:armhf.
301s Preparing to unpack .../137-python3-pil.imagetk_10.4.0-1ubuntu1_armhf.deb ...
301s Unpacking python3-pil.imagetk:armhf (10.4.0-1ubuntu1) ...
301s Selecting previously unselected package libopenjp2-7:armhf.
301s Preparing to unpack .../138-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ...
301s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ...
301s Selecting previously unselected package python3-pil:armhf.
301s Preparing to unpack .../139-python3-pil_10.4.0-1ubuntu1_armhf.deb ...
301s Unpacking python3-pil:armhf (10.4.0-1ubuntu1) ...
301s Selecting previously unselected package python3-cairo.
301s Preparing to unpack .../140-python3-cairo_1.26.1-2_armhf.deb ...
301s Unpacking python3-cairo (1.26.1-2) ...
301s Selecting previously unselected package python3-freetype.
301s Preparing to unpack .../141-python3-freetype_2.5.1-1_all.deb ...
301s Unpacking python3-freetype (2.5.1-1) ...
301s Selecting previously unselected package python3-rlpycairo.
301s Preparing to unpack .../142-python3-rlpycairo_0.3.0-3_all.deb ...
301s Unpacking python3-rlpycairo (0.3.0-3) ...
301s Selecting previously unselected package python3-reportlab.
301s Preparing to unpack .../143-python3-reportlab_4.2.5-1_all.deb ...
301s Unpacking python3-reportlab (4.2.5-1) ...
301s Selecting previously unselected package w3c-sgml-lib.
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301s Unpacking w3c-sgml-lib (1.3-3) ...
301s Selecting previously unselected package python3-biopython.
301s Preparing to unpack .../145-python3-biopython_1.84+dfsg-4_armhf.deb ...
301s Unpacking python3-biopython (1.84+dfsg-4) ...
301s Selecting previously unselected package python3-brotli.
301s Preparing to unpack .../146-python3-brotli_1.1.0-2build2_armhf.deb ...
301s Unpacking python3-brotli (1.1.0-2build2) ...
301s Selecting previously unselected package python3-cftime.
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301s Unpacking python3-cftime (1.6.4-1) ...
301s Selecting previously unselected package python3-lxml:armhf.
301s Preparing to unpack .../148-python3-lxml_5.3.0-1_armhf.deb ...
301s Unpacking python3-lxml:armhf (5.3.0-1) ...
301s Selecting previously unselected package python3-citeproc.
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302s Unpacking python3-citeproc (0.6.0-3) ...
302s Selecting previously unselected package python3-contourpy.
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302s Unpacking python3-contourpy (1.3.0-2) ...
302s Selecting previously unselected package python3-cycler.
302s Preparing to unpack .../151-python3-cycler_0.12.1-1_all.deb ...
302s Unpacking python3-cycler (0.12.1-1) ...
302s Selecting previously unselected package python3-six.
302s Preparing to unpack .../152-python3-six_1.16.0-7_all.deb ...
302s Unpacking python3-six (1.16.0-7) ...
302s Selecting previously unselected package python3-dateutil.
302s Preparing to unpack .../153-python3-dateutil_2.9.0-2_all.deb ...
302s Unpacking python3-dateutil (2.9.0-2) ...
302s Selecting previously unselected package python3-decorator.
302s Preparing to unpack .../154-python3-decorator_5.1.1-5_all.deb ...
302s Unpacking python3-decorator (5.1.1-5) ...
302s Selecting previously unselected package python3-defusedxml.
302s Preparing to unpack .../155-python3-defusedxml_0.7.1-2_all.deb ...
302s Unpacking python3-defusedxml (0.7.1-2) ...
302s Selecting previously unselected package python3-roman.
302s Preparing to unpack .../156-python3-roman_4.2-1_all.deb ...
302s Unpacking python3-roman (4.2-1) ...
302s Selecting previously unselected package python3-docutils.
302s Preparing to unpack .../157-python3-docutils_0.21.2+dfsg-2_all.deb ...
302s Unpacking python3-docutils (0.21.2+dfsg-2) ...
302s Selecting previously unselected package python3-looseversion.
302s Preparing to unpack .../158-python3-looseversion_1.3.0-3_all.deb ...
302s Unpacking python3-looseversion (1.3.0-3) ...
302s Selecting previously unselected package python3-duecredit.
302s Preparing to unpack .../159-python3-duecredit_0.10.2-2_all.deb ...
302s Unpacking python3-duecredit (0.10.2-2) ...
302s Selecting previously unselected package python3-monotonic.
302s Preparing to unpack .../160-python3-monotonic_1.6-2_all.deb ...
302s Unpacking python3-monotonic (1.6-2) ...
302s Selecting previously unselected package python3-fasteners.
302s Preparing to unpack .../161-python3-fasteners_0.18-2_all.deb ...
302s Unpacking python3-fasteners (0.18-2) ...
302s Selecting previously unselected package python3-scipy.
302s Preparing to unpack .../162-python3-scipy_1.13.1-5_armhf.deb ...
302s Unpacking python3-scipy (1.13.1-5) ...
303s Selecting previously unselected package python3-ufolib2.
303s Preparing to unpack .../163-python3-ufolib2_0.16.1+dfsg1-1_all.deb ...
303s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ...
303s Selecting previously unselected package python3-mpmath.
303s Preparing to unpack .../164-python3-mpmath_1.3.0-1_all.deb ...
303s Unpacking python3-mpmath (1.3.0-1) ...
303s Selecting previously unselected package python3-sympy.
303s Preparing to unpack .../165-python3-sympy_1.13.3-1_all.deb ...
303s Unpacking python3-sympy (1.13.3-1) ...
303s Selecting previously unselected package python3-tz.
303s Preparing to unpack .../166-python3-tz_2024.1-2_all.deb ...
303s Unpacking python3-tz (2024.1-2) ...
303s Selecting previously unselected package python3-fs.
303s Preparing to unpack .../167-python3-fs_2.4.16-4_all.deb ...
303s Unpacking python3-fs (2.4.16-4) ...
304s Selecting previously unselected package python3-lz4.
304s Preparing to unpack .../168-python3-lz4_4.0.2+dfsg-1build4_armhf.deb ...
304s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ...
304s Selecting previously unselected package python3-unicodedata2.
304s Preparing to unpack .../169-python3-unicodedata2_15.1.0+ds-1build1_armhf.deb ...
304s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ...
304s Selecting previously unselected package unicode-data.
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304s Unpacking unicode-data (15.1.0-1) ...
304s Selecting previously unselected package python3-fonttools.
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304s Unpacking python3-fonttools (4.46.0-1build2) ...
304s Selecting previously unselected package sphinx-rtd-theme-common.
304s Preparing to unpack .../172-sphinx-rtd-theme-common_3.0.1+dfsg-1_all.deb ...
304s Unpacking sphinx-rtd-theme-common (3.0.1+dfsg-1) ...
304s Selecting previously unselected package python3-mrcfile.
304s Preparing to unpack .../173-python3-mrcfile_1.5.3-3_all.deb ...
304s Unpacking python3-mrcfile (1.5.3-3) ...
304s Selecting previously unselected package python3-griddataformats.
304s Preparing to unpack .../174-python3-griddataformats_1.0.2-2_all.deb ...
304s Unpacking python3-griddataformats (1.0.2-2) ...
304s Selecting previously unselected package python3-gsd.
304s Preparing to unpack .../175-python3-gsd_3.3.0-1_armhf.deb ...
304s Unpacking python3-gsd (3.3.0-1) ...
304s Selecting previously unselected package python3-h5py-serial.
304s Preparing to unpack .../176-python3-h5py-serial_3.11.0-5ubuntu1_armhf.deb ...
304s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ...
304s Selecting previously unselected package python3-h5py.
304s Preparing to unpack .../177-python3-h5py_3.11.0-5ubuntu1_all.deb ...
304s Unpacking python3-h5py (3.11.0-5ubuntu1) ...
304s Selecting previously unselected package python3-sortedcontainers.
304s Preparing to unpack .../178-python3-sortedcontainers_2.4.0-2_all.deb ...
304s Unpacking python3-sortedcontainers (2.4.0-2) ...
304s Selecting previously unselected package python3-hypothesis.
304s Preparing to unpack .../179-python3-hypothesis_6.116.0-1_all.deb ...
304s Unpacking python3-hypothesis (6.116.0-1) ...
304s Selecting previously unselected package python3-imagesize.
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304s Unpacking python3-imagesize (1.4.1-1) ...
304s Selecting previously unselected package python3-iniconfig.
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304s Unpacking python3-iniconfig (1.1.1-2) ...
304s Selecting previously unselected package python3-joblib.
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304s Unpacking python3-joblib (1.3.2-5) ...
304s Selecting previously unselected package python3-kiwisolver.
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304s Unpacking python3-kiwisolver (1.4.7-2) ...
304s Selecting previously unselected package python3-latexcodec.
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304s Unpacking python3-latexcodec (3.0.0-1) ...
304s Selecting previously unselected package python3-matplotlib.
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305s Selecting previously unselected package python3-mda-xdrlib.
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305s Selecting previously unselected package python3-msgpack.
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305s Selecting previously unselected package python3-mmtf.
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305s Unpacking python3-mmtf (1.1.3-1) ...
305s Selecting previously unselected package python3-threadpoolctl.
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305s Selecting previously unselected package python3-tqdm.
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305s Selecting previously unselected package python3-mdanalysis.
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305s Selecting previously unselected package sphinx-common.
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305s Selecting previously unselected package python3-alabaster.
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305s Selecting previously unselected package python3-snowballstemmer.
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305s Selecting previously unselected package python3-sphinx.
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305s Selecting previously unselected package python3-sphinxcontrib.jquery.
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305s Selecting previously unselected package python3-sphinx-rtd-theme.
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305s Selecting previously unselected package python3-msmb-theme.
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305s Selecting previously unselected package python3-netcdf4.
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305s Selecting previously unselected package python3-networkx.
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306s Selecting previously unselected package python3-pandas-lib:armhf.
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307s Selecting previously unselected package python3-pytest.
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307s Selecting previously unselected package python3-seaborn.
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307s Selecting previously unselected package python3-sklearn-lib:armhf.
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307s Selecting previously unselected package python3-sphinx-sitemap.
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307s Selecting previously unselected package python3-sphinxcontrib.bibtex.
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307s Selecting previously unselected package autopkgtest-satdep.
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307s Setting up dh-python (6.20241024) ...
308s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ...
308s Setting up liblcms2-2:armhf (2.16-2) ...
308s Setting up python3-iniconfig (1.1.1-2) ...
308s Setting up libpixman-1-0:armhf (0.44.0-3) ...
308s Setting up libsharpyuv0:armhf (1.4.0-0.1) ...
308s Setting up fonts-lato (2.015-1) ...
308s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
308s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ...
308s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
308s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ...
308s Setting up python3-joblib (1.3.2-5) ...
308s Setting up python3-lz4 (4.0.2+dfsg-1build4) ...
309s Setting up libxcb-render0:armhf (1.17.0-2) ...
309s Setting up python3-defusedxml (0.7.1-2) ...
309s Setting up libarchive-zip-perl (1.68-1) ...
309s Setting up python3-alabaster (0.7.16-0.1) ...
309s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ...
309s Setting up fonts-lyx (2.4.2.1-1) ...
309s Setting up libdebhelper-perl (13.20ubuntu1) ...
309s Setting up python3-tqdm (4.67.0-1) ...
309s Setting up python3-threadpoolctl (3.1.0-1) ...
309s Setting up x11-common (1:7.7+23ubuntu3) ...
310s Setting up libdeflate0:armhf (1.22-1) ...
310s Setting up linux-libc-dev:armhf (6.11.0-8.8) ...
310s Setting up m4 (1.4.19-4build1) ...
310s Setting up python3-latexcodec (3.0.0-1) ...
310s Setting up libqhull-r8.0:armhf (2020.2-6build1) ...
310s Setting up libxcb-shm0:armhf (1.17.0-2) ...
310s Setting up python3-sortedcontainers (2.4.0-2) ...
310s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ...
310s Setting up python3-networkx (3.2.1-4ubuntu1) ...
313s Setting up python3-wheel (0.44.0-1) ...
314s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ...
314s Setting up python3-mda-xdrlib (0.2.0-3) ...
314s Setting up libaec0:armhf (1.1.3-1) ...
314s Setting up python3-tz (2024.1-2) ...
314s Setting up python3-monotonic (1.6-2) ...
314s Setting up unicode-data (15.1.0-1) ...
314s Setting up python3-six (1.16.0-7) ...
314s Setting up libpython3.12t64:armhf (3.12.7-3) ...
314s Setting up libpython3.13-minimal:armhf (3.13.0-2) ...
314s Setting up python3-roman (4.2-1) ...
314s Setting up python3-decorator (5.1.1-5) ...
315s Setting up libfontenc1:armhf (1:1.1.8-1build1) ...
315s Setting up autotools-dev (20220109.1) ...
315s Setting up libblas3:armhf (3.12.0-3build2) ...
315s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
315s Setting up python3-packaging (24.1-1) ...
315s Setting up rpcsvc-proto (1.4.2-0ubuntu7) ...
315s Setting up python3-pyproject-hooks (1.2.0-1) ...
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377s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ...
377s Setting up python3-matplotlib (3.8.3-3) ...
380s Setting up python3-mdanalysis (2.7.0-5) ...
382s Setting up python3-seaborn (0.13.2-4) ...
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417s Setting up python3-sphinx-sitemap (2.6.0-1) ...
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418s Setting up python3-sphinx-rtd-theme (3.0.1+dfsg-1) ...
418s Setting up python3-msmb-theme (1.2.0-4) ...
418s Setting up autopkgtest-satdep (0) ...
450s (Reading database ... 87907 files and directories currently installed.)
450s Removing autopkgtest-satdep (0) ...
458s autopkgtest [18:13:26]: test test-mdanalysis: [-----------------------
459s skipping tests with SKIP_TEST_LIST=
465s ============================= test session starts ==============================
465s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
465s rootdir: /tmp/autopkgtest.Bg8EJw/build.UBb/src
465s plugins: typeguard-4.4.1, hypothesis-6.116.0
465s collected 0 items / 163 errors
465s 
465s ==================================== ERRORS ====================================
465s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_align.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_align.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_atomicdistances.py __
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_atomicdistances.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_base.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_base.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_bat.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_bat.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_contacts.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_contacts.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_data.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_data.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_density.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_density.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_dielectric.py ____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_dielectric.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ___ ERROR collecting testsuite/MDAnalysisTests/analysis/test_diffusionmap.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_diffusionmap.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_dihedrals.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_dihedrals.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_distances.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_distances.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_encore.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_encore.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_gnm.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_gnm.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_helix_analysis.py __
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_helix_analysis.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hole2.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_hole2.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_leaflet.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_leaflet.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_lineardensity.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_lineardensity.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_msd.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_msd.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ___ ERROR collecting testsuite/MDAnalysisTests/analysis/test_nucleicacids.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_nucleicacids.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_nuclinfo.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_nuclinfo.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_pca.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_pca.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/analysis/test_persistencelength.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_persistencelength.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_psa.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_psa.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rdf.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_rdf.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rdf_s.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_rdf_s.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/analysis/test_rms.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_rms.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/analysis/test_waterdynamics.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_waterdynamics.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/analysis/test_wbridge.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/analysis/test_wbridge.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_core.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/auxiliary/test_core.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_edr.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/auxiliary/test_edr.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/auxiliary/test_xvg.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/auxiliary/test_xvg.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/converters/test_base.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/converters/test_base.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_openmm.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/converters/test_openmm.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/converters/test_openmm_parser.py __
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/converters/test_openmm_parser.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_parmed.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/converters/test_parmed.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/converters/test_parmed_parser.py __
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/converters/test_parmed_parser.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/converters/test_rdkit.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/converters/test_rdkit.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/converters/test_rdkit_parser.py __
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/converters/test_rdkit_parser.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py __
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_chainreader.py __
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_chainreader.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ___ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_chemfiles.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_chemfiles.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_copying.py ____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_copying.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_crd.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_crd.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dcd.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_dcd.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dlpoly.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_dlpoly.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_dms.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_dms.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_fhiaims.py ____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_fhiaims.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gms.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_gms.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gro.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_gro.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_gsd.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_gsd.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_h5md.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_h5md.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_lammps.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_lammps.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_memory.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_memory.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_mmtf.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_mmtf.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_mol2.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_mol2.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_namdbin.py ____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_namdbin.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_netcdf.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_netcdf.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_null.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_null.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pdb.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_pdb.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pdbqt.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_pdbqt.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_pqr.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_pqr.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_reader_api.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_reader_api.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_timestep_api.py __
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_timestep_api.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_tng.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_tng.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trc.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_trc.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trj.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_trj.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_trz.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_trz.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_txyz.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_txyz.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_windows.py ____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_windows.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_writer_api.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_writer_api.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_writer_registration.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_writer_registration.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_xdr.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_xdr.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/coordinates/test_xyz.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/coordinates/test_xyz.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_accessors.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_accessors.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_accumulate.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_accumulate.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _________ ERROR collecting testsuite/MDAnalysisTests/core/test_atom.py _________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_atom.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_atomgroup.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_atomgroup.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/core/test_atomselections.py ____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_atomselections.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_copying.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_copying.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/core/test_fragments.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_fragments.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/core/test_group_traj_access.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_group_traj_access.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ________ ERROR collecting testsuite/MDAnalysisTests/core/test_groups.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_groups.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_index_dtype.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_index_dtype.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_requires.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_requires.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_residue.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_residue.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_residuegroup.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_residuegroup.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_segment.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_segment.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/core/test_segmentgroup.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_segmentgroup.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_topology.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_topology.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/core/test_topologyattrs.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_topologyattrs.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ___ ERROR collecting testsuite/MDAnalysisTests/core/test_topologyobjects.py ____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_topologyobjects.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/core/test_universe.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_universe.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ________ ERROR collecting testsuite/MDAnalysisTests/core/test_unwrap.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_unwrap.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/core/test_updating_atomgroup.py __
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_updating_atomgroup.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _________ ERROR collecting testsuite/MDAnalysisTests/core/test_wrap.py _________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/core/test_wrap.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/formats/test_libdcd.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/formats/test_libdcd.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/formats/test_libmdaxdr.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/formats/test_libmdaxdr.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/import/test_import.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/import/test_import.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_augment.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/lib/test_augment.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _________ ERROR collecting testsuite/MDAnalysisTests/lib/test_cutil.py _________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/lib/test_cutil.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/lib/test_distances.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/lib/test_distances.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __________ ERROR collecting testsuite/MDAnalysisTests/lib/test_log.py __________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/lib/test_log.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/lib/test_neighborsearch.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/lib/test_neighborsearch.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_nsgrid.py _________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/lib/test_nsgrid.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_pkdtree.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/lib/test_pkdtree.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ________ ERROR collecting testsuite/MDAnalysisTests/lib/test_qcprot.py _________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/lib/test_qcprot.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _________ ERROR collecting testsuite/MDAnalysisTests/lib/test_util.py __________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/lib/test_util.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py:25: in <module>
465s     import numpy as np
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py:25: in <module>
465s     from numpy.testing import assert_almost_equal
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____________ ERROR collecting testsuite/MDAnalysisTests/test_api.py ____________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/test_api.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_altloc.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_altloc.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_crd.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_crd.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_dlpoly.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_dlpoly.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_dms.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_dms.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_fhiaims.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_fhiaims.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gms.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_gms.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gro.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_gro.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_gsd.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_gsd.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_guessers.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_guessers.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_hoomdxml.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_hoomdxml.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_itp.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_itp.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/topology/test_lammpsdata.py ____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_lammpsdata.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/topology/test_minimal.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_minimal.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_mmtf.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_mmtf.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_mol2.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_mol2.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pdb.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_pdb.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pdbqt.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_pdbqt.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_pqr.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_pqr.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_psf.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_psf.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_top.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_top.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/topology/test_topology_base.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_topology_base.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/topology/test_topology_str_types.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_topology_str_types.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/topology/test_tprparser.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_tprparser.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_txyz.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_txyz.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_xpdb.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_xpdb.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/topology/test_xyz.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/topology/test_xyz.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ___ ERROR collecting testsuite/MDAnalysisTests/transformations/test_base.py ____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/transformations/test_base.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_boxdimensions.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/transformations/test_boxdimensions.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ____ ERROR collecting testsuite/MDAnalysisTests/transformations/test_fit.py ____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/transformations/test_fit.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/transformations/test_nojump.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/transformations/test_nojump.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_positionaveraging.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/transformations/test_positionaveraging.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s __ ERROR collecting testsuite/MDAnalysisTests/transformations/test_rotate.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/transformations/test_rotate.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/transformations/test_translate.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/transformations/test_translate.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ___ ERROR collecting testsuite/MDAnalysisTests/transformations/test_wrap.py ____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/transformations/test_wrap.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_authors.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_authors.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_datafiles.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_datafiles.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_duecredit.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_duecredit.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_failure.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_failure.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_imports.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_imports.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _________ ERROR collecting testsuite/MDAnalysisTests/utils/test_log.py _________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_log.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ________ ERROR collecting testsuite/MDAnalysisTests/utils/test_meta.py _________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_meta.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_modelling.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_modelling.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/utils/test_persistence.py _____
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_persistence.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_pickleio.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_pickleio.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _______ ERROR collecting testsuite/MDAnalysisTests/utils/test_qcprot.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_qcprot.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _____ ERROR collecting testsuite/MDAnalysisTests/utils/test_selections.py ______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_selections.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ______ ERROR collecting testsuite/MDAnalysisTests/utils/test_streamio.py _______
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_streamio.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ___ ERROR collecting testsuite/MDAnalysisTests/utils/test_transformations.py ___
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_transformations.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s ________ ERROR collecting testsuite/MDAnalysisTests/utils/test_units.py ________
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/utils/test_units.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s _ ERROR collecting testsuite/MDAnalysisTests/visualization/test_streamlines.py _
465s ImportError while importing test module '/tmp/autopkgtest.Bg8EJw/build.UBb/src/testsuite/MDAnalysisTests/visualization/test_streamlines.py'.
465s Hint: make sure your test modules/packages have valid Python names.
465s Traceback:
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
465s     from . import multiarray
465s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
465s     from . import overrides
465s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
465s     from numpy.core._multiarray_umath import (
465s E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
465s 
465s During handling of the above exception, another exception occurred:
465s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
465s     from numpy.__config__ import show as show_config
465s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
465s     from numpy.core._multiarray_umath import (
465s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
465s     raise ImportError(msg)
465s E   ImportError: 
465s E   
465s E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
465s E   
465s E   Importing the numpy C-extensions failed. This error can happen for
465s E   many reasons, often due to issues with your setup or how NumPy was
465s E   installed.
465s E   
465s E   We have compiled some common reasons and troubleshooting tips at:
465s E   
465s E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
465s E   
465s E   Please note and check the following:
465s E   
465s E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
465s E     * The NumPy version is: "1.26.4"
465s E   
465s E   and make sure that they are the versions you expect.
465s E   Please carefully study the documentation linked above for further help.
465s E   
465s E   Original error was: No module named 'numpy.core._multiarray_umath'
465s 
465s The above exception was the direct cause of the following exception:
465s /usr/lib/python3.13/importlib/__init__.py:88: in import_module
465s     return _bootstrap._gcd_import(name[level:], package, level)
465s testsuite/MDAnalysisTests/__init__.py:125: in <module>
465s     from MDAnalysisTests.util import (
465s testsuite/MDAnalysisTests/util.py:41: in <module>
465s     from numpy.testing import assert_warns
465s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
465s     raise ImportError(msg) from e
465s E   ImportError: Error importing numpy: you should not try to import numpy from
465s E           its source directory; please exit the numpy source tree, and relaunch
465s E           your python interpreter from there.
465s =========================== short test summary info ============================
465s ERROR testsuite/MDAnalysisTests/analysis/test_align.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_atomicdistances.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_base.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_bat.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_contacts.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_data.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_density.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_dielectric.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_diffusionmap.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_dihedrals.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_distances.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_encore.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_gnm.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_helix_analysis.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_hole2.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbondautocorrel_deprecated.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_hydrogenbonds_analysis.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_leaflet.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_lineardensity.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_msd.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_nucleicacids.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_nuclinfo.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_pca.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_persistencelength.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_psa.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_rdf.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_rdf_s.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_rms.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_waterdynamics.py
465s ERROR testsuite/MDAnalysisTests/analysis/test_wbridge.py
465s ERROR testsuite/MDAnalysisTests/auxiliary/test_core.py
465s ERROR testsuite/MDAnalysisTests/auxiliary/test_edr.py
465s ERROR testsuite/MDAnalysisTests/auxiliary/test_xvg.py
465s ERROR testsuite/MDAnalysisTests/converters/test_base.py
465s ERROR testsuite/MDAnalysisTests/converters/test_openmm.py
465s ERROR testsuite/MDAnalysisTests/converters/test_openmm_parser.py
465s ERROR testsuite/MDAnalysisTests/converters/test_parmed.py
465s ERROR testsuite/MDAnalysisTests/converters/test_parmed_parser.py
465s ERROR testsuite/MDAnalysisTests/converters/test_rdkit.py
465s ERROR testsuite/MDAnalysisTests/converters/test_rdkit_parser.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_amber_inpcrd.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_chainreader.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_chemfiles.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_copying.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_crd.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_dcd.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_dlpoly.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_dms.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_fhiaims.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_gms.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_gro.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_gsd.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_h5md.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_lammps.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_memory.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_mmtf.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_mol2.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_namdbin.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_netcdf.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_null.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_pdb.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_pdbqt.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_pqr.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_reader_api.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_timestep_api.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_tng.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_trc.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_trj.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_trz.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_txyz.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_windows.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_writer_api.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_writer_registration.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_xdr.py
465s ERROR testsuite/MDAnalysisTests/coordinates/test_xyz.py
465s ERROR testsuite/MDAnalysisTests/core/test_accessors.py
465s ERROR testsuite/MDAnalysisTests/core/test_accumulate.py
465s ERROR testsuite/MDAnalysisTests/core/test_atom.py
465s ERROR testsuite/MDAnalysisTests/core/test_atomgroup.py
465s ERROR testsuite/MDAnalysisTests/core/test_atomselections.py
465s ERROR testsuite/MDAnalysisTests/core/test_copying.py
465s ERROR testsuite/MDAnalysisTests/core/test_fragments.py
465s ERROR testsuite/MDAnalysisTests/core/test_group_traj_access.py
465s ERROR testsuite/MDAnalysisTests/core/test_groups.py
465s ERROR testsuite/MDAnalysisTests/core/test_index_dtype.py
465s ERROR testsuite/MDAnalysisTests/core/test_requires.py
465s ERROR testsuite/MDAnalysisTests/core/test_residue.py
465s ERROR testsuite/MDAnalysisTests/core/test_residuegroup.py
465s ERROR testsuite/MDAnalysisTests/core/test_segment.py
465s ERROR testsuite/MDAnalysisTests/core/test_segmentgroup.py
465s ERROR testsuite/MDAnalysisTests/core/test_topology.py
465s ERROR testsuite/MDAnalysisTests/core/test_topologyattrs.py
465s ERROR testsuite/MDAnalysisTests/core/test_topologyobjects.py
465s ERROR testsuite/MDAnalysisTests/core/test_universe.py
465s ERROR testsuite/MDAnalysisTests/core/test_unwrap.py
465s ERROR testsuite/MDAnalysisTests/core/test_updating_atomgroup.py
465s ERROR testsuite/MDAnalysisTests/core/test_wrap.py
465s ERROR testsuite/MDAnalysisTests/formats/test_libdcd.py
465s ERROR testsuite/MDAnalysisTests/formats/test_libmdaxdr.py
465s ERROR testsuite/MDAnalysisTests/import/test_import.py
465s ERROR testsuite/MDAnalysisTests/lib/test_augment.py
465s ERROR testsuite/MDAnalysisTests/lib/test_cutil.py
465s ERROR testsuite/MDAnalysisTests/lib/test_distances.py
465s ERROR testsuite/MDAnalysisTests/lib/test_log.py
465s ERROR testsuite/MDAnalysisTests/lib/test_neighborsearch.py
465s ERROR testsuite/MDAnalysisTests/lib/test_nsgrid.py
465s ERROR testsuite/MDAnalysisTests/lib/test_pkdtree.py
465s ERROR testsuite/MDAnalysisTests/lib/test_qcprot.py
465s ERROR testsuite/MDAnalysisTests/lib/test_util.py
465s ERROR testsuite/MDAnalysisTests/parallelism/test_multiprocessing.py
465s ERROR testsuite/MDAnalysisTests/parallelism/test_pickle_transformation.py
465s ERROR testsuite/MDAnalysisTests/test_api.py
465s ERROR testsuite/MDAnalysisTests/topology/test_altloc.py
465s ERROR testsuite/MDAnalysisTests/topology/test_crd.py
465s ERROR testsuite/MDAnalysisTests/topology/test_dlpoly.py
465s ERROR testsuite/MDAnalysisTests/topology/test_dms.py
465s ERROR testsuite/MDAnalysisTests/topology/test_fhiaims.py
465s ERROR testsuite/MDAnalysisTests/topology/test_gms.py
465s ERROR testsuite/MDAnalysisTests/topology/test_gro.py
465s ERROR testsuite/MDAnalysisTests/topology/test_gsd.py
465s ERROR testsuite/MDAnalysisTests/topology/test_guessers.py
465s ERROR testsuite/MDAnalysisTests/topology/test_hoomdxml.py
465s ERROR testsuite/MDAnalysisTests/topology/test_itp.py
465s ERROR testsuite/MDAnalysisTests/topology/test_lammpsdata.py
465s ERROR testsuite/MDAnalysisTests/topology/test_minimal.py
465s ERROR testsuite/MDAnalysisTests/topology/test_mmtf.py
465s ERROR testsuite/MDAnalysisTests/topology/test_mol2.py
465s ERROR testsuite/MDAnalysisTests/topology/test_pdb.py
465s ERROR testsuite/MDAnalysisTests/topology/test_pdbqt.py
465s ERROR testsuite/MDAnalysisTests/topology/test_pqr.py
465s ERROR testsuite/MDAnalysisTests/topology/test_psf.py
465s ERROR testsuite/MDAnalysisTests/topology/test_top.py
465s ERROR testsuite/MDAnalysisTests/topology/test_topology_base.py
465s ERROR testsuite/MDAnalysisTests/topology/test_topology_str_types.py
465s ERROR testsuite/MDAnalysisTests/topology/test_tprparser.py
465s ERROR testsuite/MDAnalysisTests/topology/test_txyz.py
465s ERROR testsuite/MDAnalysisTests/topology/test_xpdb.py
465s ERROR testsuite/MDAnalysisTests/topology/test_xyz.py
465s ERROR testsuite/MDAnalysisTests/transformations/test_base.py
465s ERROR testsuite/MDAnalysisTests/transformations/test_boxdimensions.py
465s ERROR testsuite/MDAnalysisTests/transformations/test_fit.py
465s ERROR testsuite/MDAnalysisTests/transformations/test_nojump.py
465s ERROR testsuite/MDAnalysisTests/transformations/test_positionaveraging.py
465s ERROR testsuite/MDAnalysisTests/transformations/test_rotate.py
465s ERROR testsuite/MDAnalysisTests/transformations/test_translate.py
465s ERROR testsuite/MDAnalysisTests/transformations/test_wrap.py
465s ERROR testsuite/MDAnalysisTests/utils/test_authors.py
465s ERROR testsuite/MDAnalysisTests/utils/test_datafiles.py
465s ERROR testsuite/MDAnalysisTests/utils/test_duecredit.py
465s ERROR testsuite/MDAnalysisTests/utils/test_failure.py
465s ERROR testsuite/MDAnalysisTests/utils/test_imports.py
465s ERROR testsuite/MDAnalysisTests/utils/test_log.py
465s ERROR testsuite/MDAnalysisTests/utils/test_meta.py
465s ERROR testsuite/MDAnalysisTests/utils/test_modelling.py
465s ERROR testsuite/MDAnalysisTests/utils/test_persistence.py
465s ERROR testsuite/MDAnalysisTests/utils/test_pickleio.py
465s ERROR testsuite/MDAnalysisTests/utils/test_qcprot.py
465s ERROR testsuite/MDAnalysisTests/utils/test_selections.py
465s ERROR testsuite/MDAnalysisTests/utils/test_streamio.py
465s ERROR testsuite/MDAnalysisTests/utils/test_transformations.py
465s ERROR testsuite/MDAnalysisTests/utils/test_units.py
465s ERROR testsuite/MDAnalysisTests/visualization/test_streamlines.py
465s !!!!!!!!!!!!!!!!!! Interrupted: 163 errors during collection !!!!!!!!!!!!!!!!!!!
465s ============================= 163 errors in 5.26s ==============================
465s autopkgtest [18:13:34]: test test-mdanalysis: -----------------------]
470s test-mdanalysis      FAIL non-zero exit status 2
470s autopkgtest [18:13:39]: test test-mdanalysis:  - - - - - - - - - - results - - - - - - - - - -
474s autopkgtest [18:13:43]: @@@@@@@@@@@@@@@@@@@@ summary
474s test-mdanalysis      FAIL non-zero exit status 2