0s autopkgtest [10:57:59]: starting date and time: 2024-12-02 10:57:59+0000 0s autopkgtest [10:57:59]: git checkout: be626eda Fix armhf LXD image generation for plucky 0s autopkgtest [10:57:59]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qz3mm22z/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:h5py --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu3 -- lxd -r lxd-armhf-10.145.243.16 lxd-armhf-10.145.243.16:autopkgtest/ubuntu/plucky/armhf 58s autopkgtest [10:58:57]: testbed dpkg architecture: armhf 60s autopkgtest [10:58:59]: testbed apt version: 2.9.14ubuntu1 65s autopkgtest [10:59:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 68s autopkgtest [10:59:07]: testbed release detected to be: None 80s autopkgtest [10:59:19]: updating testbed package index (apt update) 82s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 82s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [213 kB] 82s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 82s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 83s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 83s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [906 kB] 83s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.4 kB] 83s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [78.6 kB] 83s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [100 kB] 83s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [928 B] 83s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [744 kB] 83s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [8344 B] 83s Get:13 http://ftpmaster.internal/ubuntu plucky/universe Sources [20.7 MB] 84s Get:14 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [298 kB] 84s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1377 kB] 84s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1353 kB] 84s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.0 MB] 84s Get:18 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [174 kB] 88s Fetched 41.0 MB in 6s (7363 kB/s) 89s Reading package lists... 97s autopkgtest [10:59:36]: upgrading testbed (apt dist-upgrade and autopurge) 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 100s Starting 2 pkgProblemResolver with broken count: 0 100s Done 101s Entering ResolveByKeep 101s 101s The following packages will be upgraded: 101s fwupd libfwupd3 python3-software-properties software-properties-common 102s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Need to get 5190 kB of archives. 102s After this operation, 4096 B disk space will be freed. 102s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 2.0.2-2 [5020 kB] 102s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd3 armhf 2.0.2-2 [124 kB] 102s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf software-properties-common all 0.107 [16.5 kB] 102s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-software-properties all 0.107 [30.4 kB] 103s Fetched 5190 kB in 1s (6719 kB/s) 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 103s Preparing to unpack .../fwupd_2.0.2-2_armhf.deb ... 103s Unpacking fwupd (2.0.2-2) over (2.0.2-1) ... 103s Preparing to unpack .../libfwupd3_2.0.2-2_armhf.deb ... 103s Unpacking libfwupd3:armhf (2.0.2-2) over (2.0.2-1) ... 103s Preparing to unpack .../software-properties-common_0.107_all.deb ... 103s Unpacking software-properties-common (0.107) over (0.105) ... 103s Preparing to unpack .../python3-software-properties_0.107_all.deb ... 103s Unpacking python3-software-properties (0.107) over (0.105) ... 103s Setting up libfwupd3:armhf (2.0.2-2) ... 103s Setting up python3-software-properties (0.107) ... 103s Setting up fwupd (2.0.2-2) ... 104s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 104s fwupd.service is a disabled or a static unit not running, not starting it. 104s Setting up software-properties-common (0.107) ... 104s Processing triggers for libc-bin (2.40-1ubuntu3) ... 104s Processing triggers for man-db (2.13.0-1) ... 105s Processing triggers for dbus (1.14.10-4ubuntu5) ... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s Starting pkgProblemResolver with broken count: 0 109s Starting 2 pkgProblemResolver with broken count: 0 109s Done 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s autopkgtest [10:59:51]: rebooting testbed after setup commands that affected boot 197s autopkgtest [11:01:15]: testbed running kernel: Linux 6.8.0-49-generic #49~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov 6 18:12:14 UTC 2 232s autopkgtest [11:01:51]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller 250s Get:1 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B] 250s Get:2 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB] 250s Get:3 http://ftpmaster.internal/ubuntu plucky/universe mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B] 250s gpgv: Signature made Wed Apr 27 22:26:52 2022 UTC 250s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 250s gpgv: issuer "emollier@debian.org" 250s gpgv: Can't check signature: No public key 250s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3.dsc: no acceptable signature found 251s autopkgtest [11:02:10]: testing package mcaller version 1.0.3+git20210624.b415090-3 254s autopkgtest [11:02:13]: build not needed 259s autopkgtest [11:02:18]: test run-unit-test: preparing testbed 261s Reading package lists... 261s Building dependency tree... 261s Reading state information... 262s Starting pkgProblemResolver with broken count: 0 262s Starting 2 pkgProblemResolver with broken count: 0 262s Done 263s The following NEW packages will be installed: 263s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx 263s fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0 libfontconfig1 263s libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 263s libhdf5-103-1t64 libhdf5-hl-100t64 libhts3t64 libhtscodecs2 libimagequant0 263s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 263s liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libpixman-1-0 263s libqhull-r8.0 libraqm0 libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6 263s libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 263s libxrender1 libxslt1.1 libxss1 mcaller python-matplotlib-data 263s python3-appdirs python3-biopython python3-brotli python3-cairo 263s python3-contourpy python3-cycler python3-dateutil python3-decorator 263s python3-fonttools python3-freetype python3-fs python3-h5py 263s python3-h5py-serial python3-joblib python3-kiwisolver python3-lxml 263s python3-lz4 python3-matplotlib python3-mpmath python3-numpy 263s python3-packaging python3-pandas python3-pandas-lib python3-pil 263s python3-pil.imagetk python3-pysam python3-reportlab python3-rlpycairo 263s python3-scipy python3-seaborn python3-six python3-sklearn 263s python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk 263s python3-tz python3-ufolib2 python3-unicodedata2 python3.12-tk python3.13-tk 263s tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 263s xfonts-utils 263s 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. 263s Need to get 102 MB of archives. 263s After this operation, 431 MB of additional disk space will be used. 263s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [909 kB] 263s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 263s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 264s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 264s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB] 264s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 264s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 264s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf xfonts-utils armhf 1:7.7+7 [90.6 kB] 264s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB] 267s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 267s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 267s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 267s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 267s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 267s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.15-1 [685 kB] 267s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7build1 [525 kB] 267s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-7build1 [4840 B] 267s Get:18 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.2.1-1 [171 kB] 267s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 267s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-4 [126 kB] 267s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 267s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 267s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 267s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 267s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 267s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 267s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 268s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 268s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 268s Get:30 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 268s Get:31 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 268s Get:32 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 268s Get:33 http://ftpmaster.internal/ubuntu plucky/universe armhf libhtscodecs2 armhf 1.6.1-1 [67.9 kB] 268s Get:34 http://ftpmaster.internal/ubuntu plucky/universe armhf libhts3t64 armhf 1.20+ds-2 [394 kB] 268s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 268s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 268s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 268s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 268s Get:39 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 269s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-4 [2086 kB] 269s Get:41 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 269s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 269s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 269s Get:44 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B] 269s Get:45 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 269s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB] 269s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 269s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 269s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 269s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 269s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 269s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 269s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu1 [150 kB] 269s Get:54 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-joblib all 1.3.2-5 [206 kB] 269s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11ubuntu1 [3975 kB] 270s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 270s Get:57 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5ubuntu1 [19.1 MB] 271s Get:58 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-threadpoolctl all 3.1.0-1 [21.3 kB] 271s Get:59 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sklearn-lib armhf 1.4.2+dfsg-6build1 [6321 kB] 271s Get:60 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sklearn all 1.4.2+dfsg-6build1 [2257 kB] 271s Get:61 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py-serial armhf 3.11.0-8ubuntu3 [1559 kB] 271s Get:62 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py all 3.11.0-8ubuntu3 [7982 B] 271s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.7-3 [112 kB] 271s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-tk armhf 3.13.0-2 [103 kB] 271s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tk armhf 3.12.7-1 [9752 B] 271s Get:66 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 10.4.0-1ubuntu2 [8970 B] 271s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 271s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu2 [446 kB] 271s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cairo armhf 1.26.1-2build1 [129 kB] 271s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-freetype all 2.5.1-1 [92.3 kB] 272s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B] 272s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-reportlab all 4.2.5-1 [1107 kB] 272s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf w3c-sgml-lib all 1.3-3 [280 kB] 272s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-biopython armhf 1.84+dfsg-4build1 [1672 kB] 272s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB] 272s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dateutil all 2.9.0-3 [80.2 kB] 272s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.0-2build1 [238 kB] 272s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B] 272s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build3 [324 kB] 272s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2024.1-2 [31.4 kB] 272s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf python3-six all 1.16.0-7 [13.1 kB] 272s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf python3-appdirs all 1.4.4-4 [10.9 kB] 272s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-4 [91.3 kB] 272s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.0-1build1 [1630 kB] 272s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.0.2+dfsg-1build5 [25.5 kB] 272s Get:86 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 272s Get:87 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB] 272s Get:88 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 272s Get:89 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-unicodedata2 armhf 15.1.0+ds-1build2 [357 kB] 272s Get:90 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB] 272s Get:91 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.55.0-3 [1626 kB] 272s Get:92 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-2build1 [71.1 kB] 272s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.2-1 [51.5 kB] 272s Get:94 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib armhf 3.8.3-3ubuntu1 [4597 kB] 273s Get:95 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-5ubuntu1 [7608 kB] 273s Get:96 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas all 2.2.3+dfsg-5ubuntu1 [3112 kB] 273s Get:97 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-seaborn all 0.13.2-4 [225 kB] 273s Get:98 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pysam armhf 0.22.1+ds-2build1 [3965 kB] 273s Get:99 http://ftpmaster.internal/ubuntu plucky/universe armhf mcaller all 1.0.3+git20210624.b415090-3 [19.3 kB] 274s Fetched 102 MB in 11s (9502 kB/s) 274s Selecting previously unselected package libtcl8.6:armhf. 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 274s Preparing to unpack .../00-libtcl8.6_8.6.15+dfsg-2_armhf.deb ... 274s Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ... 274s Selecting previously unselected package libfreetype6:armhf. 274s Preparing to unpack .../01-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 274s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 274s Selecting previously unselected package fonts-dejavu-mono. 274s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ... 274s Unpacking fonts-dejavu-mono (2.37-8) ... 274s Selecting previously unselected package fonts-dejavu-core. 274s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ... 274s Unpacking fonts-dejavu-core (2.37-8) ... 274s Selecting previously unselected package libfontenc1:armhf. 274s Preparing to unpack .../04-libfontenc1_1%3a1.1.8-1build1_armhf.deb ... 274s Unpacking libfontenc1:armhf (1:1.1.8-1build1) ... 274s Selecting previously unselected package x11-common. 274s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu3_all.deb ... 274s Unpacking x11-common (1:7.7+23ubuntu3) ... 274s Selecting previously unselected package xfonts-encodings. 274s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 274s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 274s Selecting previously unselected package xfonts-utils. 274s Preparing to unpack .../07-xfonts-utils_1%3a7.7+7_armhf.deb ... 274s Unpacking xfonts-utils (1:7.7+7) ... 274s Selecting previously unselected package fonts-urw-base35. 274s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ... 274s Unpacking fonts-urw-base35 (20200910-8) ... 274s Selecting previously unselected package fontconfig-config. 274s Preparing to unpack .../09-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 275s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 275s Selecting previously unselected package libfontconfig1:armhf. 275s Preparing to unpack .../10-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 275s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 275s Selecting previously unselected package libxrender1:armhf. 275s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 275s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 275s Selecting previously unselected package libxft2:armhf. 275s Preparing to unpack .../12-libxft2_2.3.6-1build1_armhf.deb ... 275s Unpacking libxft2:armhf (2.3.6-1build1) ... 275s Selecting previously unselected package libxss1:armhf. 275s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_armhf.deb ... 275s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 275s Selecting previously unselected package libtk8.6:armhf. 275s Preparing to unpack .../14-libtk8.6_8.6.15-1_armhf.deb ... 275s Unpacking libtk8.6:armhf (8.6.15-1) ... 275s Selecting previously unselected package tk8.6-blt2.5. 275s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-7build1_armhf.deb ... 275s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 275s Selecting previously unselected package blt. 275s Preparing to unpack .../16-blt_2.5.3+dfsg-7build1_armhf.deb ... 275s Unpacking blt (2.5.3+dfsg-7build1) ... 275s Selecting previously unselected package fonts-lyx. 275s Preparing to unpack .../17-fonts-lyx_2.4.2.1-1_all.deb ... 275s Unpacking fonts-lyx (2.4.2.1-1) ... 275s Selecting previously unselected package libaec0:armhf. 275s Preparing to unpack .../18-libaec0_1.1.3-1_armhf.deb ... 275s Unpacking libaec0:armhf (1.1.3-1) ... 275s Selecting previously unselected package libblas3:armhf. 275s Preparing to unpack .../19-libblas3_3.12.0-4_armhf.deb ... 275s Unpacking libblas3:armhf (3.12.0-4) ... 275s Selecting previously unselected package libpixman-1-0:armhf. 275s Preparing to unpack .../20-libpixman-1-0_0.44.0-3_armhf.deb ... 275s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 275s Selecting previously unselected package libxcb-render0:armhf. 275s Preparing to unpack .../21-libxcb-render0_1.17.0-2_armhf.deb ... 275s Unpacking libxcb-render0:armhf (1.17.0-2) ... 275s Selecting previously unselected package libxcb-shm0:armhf. 275s Preparing to unpack .../22-libxcb-shm0_1.17.0-2_armhf.deb ... 275s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 275s Selecting previously unselected package libcairo2:armhf. 275s Preparing to unpack .../23-libcairo2_1.18.2-2_armhf.deb ... 275s Unpacking libcairo2:armhf (1.18.2-2) ... 275s Selecting previously unselected package libdeflate0:armhf. 275s Preparing to unpack .../24-libdeflate0_1.22-1_armhf.deb ... 275s Unpacking libdeflate0:armhf (1.22-1) ... 275s Selecting previously unselected package libgfortran5:armhf. 275s Preparing to unpack .../25-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 275s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 275s Selecting previously unselected package libgomp1:armhf. 275s Preparing to unpack .../26-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 275s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 275s Selecting previously unselected package libgraphite2-3:armhf. 275s Preparing to unpack .../27-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 275s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 275s Selecting previously unselected package libharfbuzz0b:armhf. 275s Preparing to unpack .../28-libharfbuzz0b_10.0.1-1_armhf.deb ... 275s Unpacking libharfbuzz0b:armhf (10.0.1-1) ... 275s Selecting previously unselected package libsz2:armhf. 275s Preparing to unpack .../29-libsz2_1.1.3-1_armhf.deb ... 275s Unpacking libsz2:armhf (1.1.3-1) ... 275s Selecting previously unselected package libhdf5-103-1t64:armhf. 275s Preparing to unpack .../30-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 275s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 275s Selecting previously unselected package libhdf5-hl-100t64:armhf. 275s Preparing to unpack .../31-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 275s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 275s Selecting previously unselected package libhtscodecs2:armhf. 275s Preparing to unpack .../32-libhtscodecs2_1.6.1-1_armhf.deb ... 275s Unpacking libhtscodecs2:armhf (1.6.1-1) ... 275s Selecting previously unselected package libhts3t64:armhf. 275s Preparing to unpack .../33-libhts3t64_1.20+ds-2_armhf.deb ... 275s Unpacking libhts3t64:armhf (1.20+ds-2) ... 275s Selecting previously unselected package libimagequant0:armhf. 275s Preparing to unpack .../34-libimagequant0_2.18.0-1build1_armhf.deb ... 275s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 275s Selecting previously unselected package libjpeg-turbo8:armhf. 275s Preparing to unpack .../35-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 275s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 275s Selecting previously unselected package libjpeg8:armhf. 275s Preparing to unpack .../36-libjpeg8_8c-2ubuntu11_armhf.deb ... 275s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 275s Selecting previously unselected package libjs-jquery. 275s Preparing to unpack .../37-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 275s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 275s Selecting previously unselected package libjs-jquery-ui. 275s Preparing to unpack .../38-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 275s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 276s Selecting previously unselected package liblapack3:armhf. 276s Preparing to unpack .../39-liblapack3_3.12.0-4_armhf.deb ... 276s Unpacking liblapack3:armhf (3.12.0-4) ... 276s Selecting previously unselected package liblbfgsb0:armhf. 276s Preparing to unpack .../40-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 276s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 276s Selecting previously unselected package liblcms2-2:armhf. 276s Preparing to unpack .../41-liblcms2-2_2.16-2_armhf.deb ... 276s Unpacking liblcms2-2:armhf (2.16-2) ... 276s Selecting previously unselected package liblerc4:armhf. 276s Preparing to unpack .../42-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 276s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 276s Selecting previously unselected package liblzf1:armhf. 276s Preparing to unpack .../43-liblzf1_3.6-4_armhf.deb ... 276s Unpacking liblzf1:armhf (3.6-4) ... 276s Selecting previously unselected package libqhull-r8.0:armhf. 276s Preparing to unpack .../44-libqhull-r8.0_2020.2-6build1_armhf.deb ... 276s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 276s Selecting previously unselected package libraqm0:armhf. 276s Preparing to unpack .../45-libraqm0_0.10.1-1build1_armhf.deb ... 276s Unpacking libraqm0:armhf (0.10.1-1build1) ... 276s Selecting previously unselected package libsharpyuv0:armhf. 276s Preparing to unpack .../46-libsharpyuv0_1.4.0-0.1_armhf.deb ... 276s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 276s Selecting previously unselected package libjbig0:armhf. 276s Preparing to unpack .../47-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 276s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 276s Selecting previously unselected package libwebp7:armhf. 276s Preparing to unpack .../48-libwebp7_1.4.0-0.1_armhf.deb ... 276s Unpacking libwebp7:armhf (1.4.0-0.1) ... 276s Selecting previously unselected package libtiff6:armhf. 276s Preparing to unpack .../49-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 276s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 276s Selecting previously unselected package libwebpdemux2:armhf. 276s Preparing to unpack .../50-libwebpdemux2_1.4.0-0.1_armhf.deb ... 276s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 276s Selecting previously unselected package libwebpmux3:armhf. 276s Preparing to unpack .../51-libwebpmux3_1.4.0-0.1_armhf.deb ... 276s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 276s Selecting previously unselected package libxslt1.1:armhf. 276s Preparing to unpack .../52-libxslt1.1_1.1.39-0exp1ubuntu1_armhf.deb ... 276s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 276s Selecting previously unselected package python3-joblib. 276s Preparing to unpack .../53-python3-joblib_1.3.2-5_all.deb ... 276s Unpacking python3-joblib (1.3.2-5) ... 276s Selecting previously unselected package python3-numpy. 276s Preparing to unpack .../54-python3-numpy_1%3a1.26.4+ds-11ubuntu1_armhf.deb ... 276s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 276s Selecting previously unselected package python3-decorator. 276s Preparing to unpack .../55-python3-decorator_5.1.1-5_all.deb ... 276s Unpacking python3-decorator (5.1.1-5) ... 276s Selecting previously unselected package python3-scipy. 276s Preparing to unpack .../56-python3-scipy_1.13.1-5ubuntu1_armhf.deb ... 276s Unpacking python3-scipy (1.13.1-5ubuntu1) ... 277s Selecting previously unselected package python3-threadpoolctl. 277s Preparing to unpack .../57-python3-threadpoolctl_3.1.0-1_all.deb ... 277s Unpacking python3-threadpoolctl (3.1.0-1) ... 277s Selecting previously unselected package python3-sklearn-lib:armhf. 277s Preparing to unpack .../58-python3-sklearn-lib_1.4.2+dfsg-6build1_armhf.deb ... 277s Unpacking python3-sklearn-lib:armhf (1.4.2+dfsg-6build1) ... 277s Selecting previously unselected package python3-sklearn. 277s Preparing to unpack .../59-python3-sklearn_1.4.2+dfsg-6build1_all.deb ... 277s Unpacking python3-sklearn (1.4.2+dfsg-6build1) ... 277s Selecting previously unselected package python3-h5py-serial. 277s Preparing to unpack .../60-python3-h5py-serial_3.11.0-8ubuntu3_armhf.deb ... 277s Unpacking python3-h5py-serial (3.11.0-8ubuntu3) ... 277s Selecting previously unselected package python3-h5py. 277s Preparing to unpack .../61-python3-h5py_3.11.0-8ubuntu3_all.deb ... 277s Unpacking python3-h5py (3.11.0-8ubuntu3) ... 277s Selecting previously unselected package python3.12-tk. 277s Preparing to unpack .../62-python3.12-tk_3.12.7-3_armhf.deb ... 277s Unpacking python3.12-tk (3.12.7-3) ... 277s Selecting previously unselected package python3.13-tk. 277s Preparing to unpack .../63-python3.13-tk_3.13.0-2_armhf.deb ... 277s Unpacking python3.13-tk (3.13.0-2) ... 277s Selecting previously unselected package python3-tk:armhf. 277s Preparing to unpack .../64-python3-tk_3.12.7-1_armhf.deb ... 277s Unpacking python3-tk:armhf (3.12.7-1) ... 277s Selecting previously unselected package python3-pil.imagetk:armhf. 277s Preparing to unpack .../65-python3-pil.imagetk_10.4.0-1ubuntu2_armhf.deb ... 278s Unpacking python3-pil.imagetk:armhf (10.4.0-1ubuntu2) ... 278s Selecting previously unselected package libopenjp2-7:armhf. 278s Preparing to unpack .../66-libopenjp2-7_2.5.0-2ubuntu1_armhf.deb ... 278s Unpacking libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 278s Selecting previously unselected package python3-pil:armhf. 278s Preparing to unpack .../67-python3-pil_10.4.0-1ubuntu2_armhf.deb ... 278s Unpacking python3-pil:armhf (10.4.0-1ubuntu2) ... 278s Selecting previously unselected package python3-cairo. 278s Preparing to unpack .../68-python3-cairo_1.26.1-2build1_armhf.deb ... 278s Unpacking python3-cairo (1.26.1-2build1) ... 278s Selecting previously unselected package python3-freetype. 278s Preparing to unpack .../69-python3-freetype_2.5.1-1_all.deb ... 278s Unpacking python3-freetype (2.5.1-1) ... 278s Selecting previously unselected package python3-rlpycairo. 278s Preparing to unpack .../70-python3-rlpycairo_0.3.0-3_all.deb ... 278s Unpacking python3-rlpycairo (0.3.0-3) ... 278s Selecting previously unselected package python3-reportlab. 278s Preparing to unpack .../71-python3-reportlab_4.2.5-1_all.deb ... 278s Unpacking python3-reportlab (4.2.5-1) ... 278s Selecting previously unselected package w3c-sgml-lib. 278s Preparing to unpack .../72-w3c-sgml-lib_1.3-3_all.deb ... 278s Unpacking w3c-sgml-lib (1.3-3) ... 278s Selecting previously unselected package python3-biopython. 278s Preparing to unpack .../73-python3-biopython_1.84+dfsg-4build1_armhf.deb ... 278s Unpacking python3-biopython (1.84+dfsg-4build1) ... 278s Selecting previously unselected package python-matplotlib-data. 278s Preparing to unpack .../74-python-matplotlib-data_3.8.3-3ubuntu1_all.deb ... 278s Unpacking python-matplotlib-data (3.8.3-3ubuntu1) ... 278s Selecting previously unselected package python3-dateutil. 278s Preparing to unpack .../75-python3-dateutil_2.9.0-3_all.deb ... 278s Unpacking python3-dateutil (2.9.0-3) ... 278s Selecting previously unselected package python3-contourpy. 278s Preparing to unpack .../76-python3-contourpy_1.3.0-2build1_armhf.deb ... 278s Unpacking python3-contourpy (1.3.0-2build1) ... 278s Selecting previously unselected package python3-cycler. 278s Preparing to unpack .../77-python3-cycler_0.12.1-1_all.deb ... 278s Unpacking python3-cycler (0.12.1-1) ... 278s Selecting previously unselected package python3-brotli. 278s Preparing to unpack .../78-python3-brotli_1.1.0-2build3_armhf.deb ... 278s Unpacking python3-brotli (1.1.0-2build3) ... 278s Selecting previously unselected package python3-tz. 278s Preparing to unpack .../79-python3-tz_2024.1-2_all.deb ... 278s Unpacking python3-tz (2024.1-2) ... 278s Selecting previously unselected package python3-six. 278s Preparing to unpack .../80-python3-six_1.16.0-7_all.deb ... 278s Unpacking python3-six (1.16.0-7) ... 278s Selecting previously unselected package python3-appdirs. 278s Preparing to unpack .../81-python3-appdirs_1.4.4-4_all.deb ... 278s Unpacking python3-appdirs (1.4.4-4) ... 278s Selecting previously unselected package python3-fs. 278s Preparing to unpack .../82-python3-fs_2.4.16-4_all.deb ... 278s Unpacking python3-fs (2.4.16-4) ... 278s Selecting previously unselected package python3-lxml:armhf. 278s Preparing to unpack .../83-python3-lxml_5.3.0-1build1_armhf.deb ... 278s Unpacking python3-lxml:armhf (5.3.0-1build1) ... 279s Selecting previously unselected package python3-lz4. 279s Preparing to unpack .../84-python3-lz4_4.0.2+dfsg-1build5_armhf.deb ... 279s Unpacking python3-lz4 (4.0.2+dfsg-1build5) ... 279s Selecting previously unselected package python3-mpmath. 279s Preparing to unpack .../85-python3-mpmath_1.3.0-1_all.deb ... 279s Unpacking python3-mpmath (1.3.0-1) ... 279s Selecting previously unselected package python3-sympy. 279s Preparing to unpack .../86-python3-sympy_1.13.3-1_all.deb ... 279s Unpacking python3-sympy (1.13.3-1) ... 279s Selecting previously unselected package python3-ufolib2. 279s Preparing to unpack .../87-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 279s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 279s Selecting previously unselected package python3-unicodedata2. 279s Preparing to unpack .../88-python3-unicodedata2_15.1.0+ds-1build2_armhf.deb ... 279s Unpacking python3-unicodedata2 (15.1.0+ds-1build2) ... 279s Selecting previously unselected package unicode-data. 279s Preparing to unpack .../89-unicode-data_15.1.0-1_all.deb ... 279s Unpacking unicode-data (15.1.0-1) ... 279s Selecting previously unselected package python3-fonttools. 279s Preparing to unpack .../90-python3-fonttools_4.55.0-3_armhf.deb ... 279s Unpacking python3-fonttools (4.55.0-3) ... 279s Selecting previously unselected package python3-kiwisolver. 279s Preparing to unpack .../91-python3-kiwisolver_1.4.7-2build1_armhf.deb ... 279s Unpacking python3-kiwisolver (1.4.7-2build1) ... 279s Selecting previously unselected package python3-packaging. 279s Preparing to unpack .../92-python3-packaging_24.2-1_all.deb ... 279s Unpacking python3-packaging (24.2-1) ... 279s Selecting previously unselected package python3-matplotlib. 279s Preparing to unpack .../93-python3-matplotlib_3.8.3-3ubuntu1_armhf.deb ... 279s Unpacking python3-matplotlib (3.8.3-3ubuntu1) ... 280s Selecting previously unselected package python3-pandas-lib:armhf. 280s Preparing to unpack .../94-python3-pandas-lib_2.2.3+dfsg-5ubuntu1_armhf.deb ... 280s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-5ubuntu1) ... 280s Selecting previously unselected package python3-pandas. 280s Preparing to unpack .../95-python3-pandas_2.2.3+dfsg-5ubuntu1_all.deb ... 280s Unpacking python3-pandas (2.2.3+dfsg-5ubuntu1) ... 280s Selecting previously unselected package python3-seaborn. 280s Preparing to unpack .../96-python3-seaborn_0.13.2-4_all.deb ... 280s Unpacking python3-seaborn (0.13.2-4) ... 280s Selecting previously unselected package python3-pysam. 280s Preparing to unpack .../97-python3-pysam_0.22.1+ds-2build1_armhf.deb ... 280s Unpacking python3-pysam (0.22.1+ds-2build1) ... 280s Selecting previously unselected package mcaller. 280s Preparing to unpack .../98-mcaller_1.0.3+git20210624.b415090-3_all.deb ... 280s Unpacking mcaller (1.0.3+git20210624.b415090-3) ... 280s Setting up libhtscodecs2:armhf (1.6.1-1) ... 280s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 280s Setting up liblcms2-2:armhf (2.16-2) ... 280s Setting up libpixman-1-0:armhf (0.44.0-3) ... 280s Setting up libsharpyuv0:armhf (1.4.0-0.1) ... 280s Setting up w3c-sgml-lib (1.3-3) ... 308s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 308s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 308s Setting up python3-joblib (1.3.2-5) ... 308s Setting up python3-lz4 (4.0.2+dfsg-1build5) ... 308s Setting up libxcb-render0:armhf (1.17.0-2) ... 308s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ... 308s Setting up fonts-lyx (2.4.2.1-1) ... 308s Setting up python3-threadpoolctl (3.1.0-1) ... 308s Setting up x11-common (1:7.7+23ubuntu3) ... 309s Setting up libdeflate0:armhf (1.22-1) ... 309s Setting up libqhull-r8.0:armhf (2020.2-6build1) ... 309s Setting up libxcb-shm0:armhf (1.17.0-2) ... 309s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 309s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 309s Setting up libaec0:armhf (1.1.3-1) ... 309s Setting up python3-tz (2024.1-2) ... 309s Setting up unicode-data (15.1.0-1) ... 309s Setting up python3-six (1.16.0-7) ... 309s Setting up python3-decorator (5.1.1-5) ... 309s Setting up libfontenc1:armhf (1:1.1.8-1build1) ... 309s Setting up libblas3:armhf (3.12.0-4) ... 309s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 309s Setting up python3-packaging (24.2-1) ... 309s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 309s Setting up python3-brotli (1.1.0-2build3) ... 309s Setting up liblzf1:armhf (3.6-4) ... 309s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 309s Setting up python3-cycler (0.12.1-1) ... 309s Setting up libimagequant0:armhf (2.18.0-1build1) ... 309s Setting up fonts-dejavu-mono (2.37-8) ... 309s Setting up python3-kiwisolver (1.4.7-2build1) ... 310s Setting up libtcl8.6:armhf (8.6.15+dfsg-2) ... 310s Setting up fonts-dejavu-core (2.37-8) ... 310s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 310s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 310s Setting up libwebp7:armhf (1.4.0-0.1) ... 310s Setting up libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 310s Setting up libhts3t64:armhf (1.20+ds-2) ... 310s Setting up libopenjp2-7:armhf (2.5.0-2ubuntu1) ... 310s Setting up libharfbuzz0b:armhf (10.0.1-1) ... 310s Setting up python3-dateutil (2.9.0-3) ... 310s Setting up libxss1:armhf (1:1.2.3-1build3) ... 310s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 310s Setting up python3-mpmath (1.3.0-1) ... 311s Setting up python-matplotlib-data (3.8.3-3ubuntu1) ... 311s Setting up libwebpmux3:armhf (1.4.0-0.1) ... 311s Setting up python3-appdirs (1.4.4-4) ... 311s Setting up libsz2:armhf (1.1.3-1) ... 311s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 311s Setting up python3-sympy (1.13.3-1) ... 318s Setting up liblapack3:armhf (3.12.0-4) ... 318s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 318s Setting up python3-pysam (0.22.1+ds-2build1) ... 318s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 318s Setting up libwebpdemux2:armhf (1.4.0-0.1) ... 318s Setting up python3-freetype (2.5.1-1) ... 318s Setting up xfonts-utils (1:7.7+7) ... 318s Setting up python3-fs (2.4.16-4) ... 319s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 319s Setting up libraqm0:armhf (0.10.1-1build1) ... 319s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 321s Setting up python3-lxml:armhf (5.3.0-1build1) ... 321s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 321s Setting up python3-contourpy (1.3.0-2build1) ... 321s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 321s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 321s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 321s Setting up python3-scipy (1.13.1-5ubuntu1) ... 325s Setting up python3-pandas-lib:armhf (2.2.3+dfsg-5ubuntu1) ... 325s Setting up python3-sklearn-lib:armhf (1.4.2+dfsg-6build1) ... 325s Setting up python3-h5py-serial (3.11.0-8ubuntu3) ... 325s Setting up fonts-urw-base35 (20200910-8) ... 325s Setting up python3-pil:armhf (10.4.0-1ubuntu2) ... 325s Setting up python3-pandas (2.2.3+dfsg-5ubuntu1) ... 331s Setting up python3-h5py (3.11.0-8ubuntu3) ... 331s Setting up python3-sklearn (1.4.2+dfsg-6build1) ... 333s Setting up python3-fonttools (4.55.0-3) ... 334s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 334s Processing triggers for sgml-base (1.31) ... 334s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 334s Setting up libxft2:armhf (2.3.6-1build1) ... 334s Setting up libtk8.6:armhf (8.6.15-1) ... 334s Processing triggers for libc-bin (2.40-1ubuntu3) ... 334s Setting up python3.12-tk (3.12.7-3) ... 334s Processing triggers for man-db (2.13.0-1) ... 335s Setting up libcairo2:armhf (1.18.2-2) ... 335s Setting up python3.13-tk (3.13.0-2) ... 335s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 335s Setting up python3-cairo (1.26.1-2build1) ... 335s Setting up blt (2.5.3+dfsg-7build1) ... 335s Setting up python3-tk:armhf (3.12.7-1) ... 335s Setting up python3-pil.imagetk:armhf (10.4.0-1ubuntu2) ... 336s Setting up python3-rlpycairo (0.3.0-3) ... 336s Setting up python3-reportlab (4.2.5-1) ... 336s Setting up python3-biopython (1.84+dfsg-4build1) ... 338s Setting up python3-matplotlib (3.8.3-3ubuntu1) ... 339s Setting up python3-seaborn (0.13.2-4) ... 340s Setting up mcaller (1.0.3+git20210624.b415090-3) ... 340s Processing triggers for libc-bin (2.40-1ubuntu3) ... 353s autopkgtest [11:03:51]: test run-unit-test: [----------------------- 357s testdata/ 357s 1 contigs 357s 1 threads 357s thread finished processing...: 357s 35 observations 357s 35 positions 357s 0 regions with multiple methylated bases 357s 0 observations with skips included 357s 8 observations with too many skips 357s Finished extracting signals 359s testdata/ 359s 1 contigs 359s 1 threads 359s thread finished processing...: 359s 9 observations 359s 9 positions 359s 0 regions with multiple methylated bases 359s 0 observations with skips included 359s 2 observations with too many skips 359s Finished extracting signals 359s testdata/ 359s 1 contigs 359s 4 threads 359s thread finished processing...: 359s 9 observations 359s 9 positions 359s 0 regions with multiple methylated bases 359s 0 observations with skips included 359s 4 observations with too many skips 359s Error: could not find sequence for reference contig li 359s thread finished processing...: 359s 16 observations 359s 16 positions 359s 0 regions with multiple methylated bases 359s 0 observations with skips included 359s 6 observations with too many skips 359s thread finished processing...: 359s 44 observations 359s 44 positions 359s 1 regions with multiple methylated bases 359s 0 observations with skips included 359s 10 observations with too many skips 359s thread finished processing...: 359s 28 observations 359s 28 positions 359s 0 regions with multiple methylated bases 359s 0 observations with skips included 359s 6 observations with too many skips 360s Finished extracting signals 360s Merging files... 360s Training... 360s ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A'] 360s [[-0.18999999999999992, -1.6799999999999997, -2.3, 0.56, -1.41, 1.48, 7.055265349382997], [-1.1300000000000001, -1.67, -1.1, -0.5774999999999999, 0.42, 1.0225, 7.055265349382997], [0.0050000000000000044, -0.29500000000000004, -0.54, 3.96, 1.47, 0.06499999999999995, 7.055265349382997], [3.255, 3.925, 0.03999999999999998, -0.15599999999999997, -1.01, 1.3533333333333333, 7.055265349382997], [-0.07999999999999996, -1.3666666666666665, 0.84, -0.5449999999999999, -3.22, -1.53, 7.055265349382997], [-1.74, -2.56, -2.0774999999999997, 1.84, -0.09999999999999998, -0.3, 7.055265349382997], [1.92, 2.75, 1.59, 1.6433333333333333, 1.59, 1.27, 7.055265349382997], [-2.15, 1.8849999999999998, 2.58, -0.36, 4.26, -2.4625, 7.055265349382997], [1.485, 4.095000000000001, -1.12, -0.91, -0.62, 1.17, 7.055265349382997], [1.095, 0.78, -2.38, 1.47, -1.7149999999999999, -0.8283333333333335, 7.055265349382997]] 360s ['GGATTMTTTCA', 'CTGGAMAAAGC', 'GGGCCMTTACC', 'GGTGGMTGAAT', 'GGTTAMCGCGT', 'TGTGGMGAAAC', 'AGAACMCTTTC', 'AGGCCMTTCAA', 'AATCAMAAGAA', 'TACTTMCCGCA'] 360s NN general model scores: 1.0,0.375,0.75,0.625,0.875 360s Cross validation accuracy: 0.72 (+/- 0.43) 360s Finished training 360s PASS 361s autopkgtest [11:04:00]: test run-unit-test: -----------------------] 368s autopkgtest [11:04:07]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 368s run-unit-test PASS 375s autopkgtest [11:04:14]: @@@@@@@@@@@@@@@@@@@@ summary 375s run-unit-test PASS