0s autopkgtest [01:28:26]: starting date and time: 2025-03-16 01:28:26+0000 0s autopkgtest [01:28:26]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [01:28:26]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qf0u86wx/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:scikit-learn --apt-upgrade macs --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-8 -- lxd -r lxd-armhf-10.145.243.149 lxd-armhf-10.145.243.149:autopkgtest/ubuntu/plucky/armhf 22s autopkgtest [01:28:48]: testbed dpkg architecture: armhf 24s autopkgtest [01:28:50]: testbed apt version: 2.9.33 28s autopkgtest [01:28:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 30s autopkgtest [01:28:56]: testbed release detected to be: None 38s autopkgtest [01:29:04]: updating testbed package index (apt update) 40s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 40s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 40s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 41s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 41s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 41s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 41s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 41s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [74.9 kB] 41s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1792 B] 41s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 41s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [290 kB] 41s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [10.5 kB] 41s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4168 B] 41s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 41s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 56s Get:16 http://ftpmaster.internal/ubuntu plucky/main Sources [1389 kB] 58s Get:17 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 58s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 59s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.5 kB] 59s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 59s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.3 MB] 71s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 73s Fetched 41.1 MB in 33s (1245 kB/s) 74s Reading package lists... 80s autopkgtest [01:29:46]: upgrading testbed (apt dist-upgrade and autopurge) 82s Reading package lists... 82s Building dependency tree... 82s Reading state information... 82s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 83s Starting 2 pkgProblemResolver with broken count: 0 83s Done 83s Entering ResolveByKeep 84s 84s Calculating upgrade... 84s The following packages will be upgraded: 84s pinentry-curses python3-jinja2 sos strace 85s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s Need to get 960 kB of archives. 85s After this operation, 23.6 kB of additional disk space will be used. 85s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 85s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 85s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 85s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 86s Fetched 960 kB in 1s (649 kB/s) 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 87s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 87s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 87s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 87s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 87s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 87s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 87s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 87s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 87s Setting up sos (4.9.0-5) ... 88s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 88s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 88s Setting up strace (6.13+ds-1ubuntu1) ... 88s Processing triggers for man-db (2.13.0-1) ... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Starting pkgProblemResolver with broken count: 0 92s Starting 2 pkgProblemResolver with broken count: 0 92s Done 92s Solving dependencies... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s autopkgtest [01:30:01]: rebooting testbed after setup commands that affected boot 136s autopkgtest [01:30:42]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 161s autopkgtest [01:31:07]: @@@@@@@@@@@@@@@@@@@@ apt-source macs 241s Get:1 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1build3 (dsc) [2176 B] 241s Get:2 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1build3 (tar) [197 MB] 241s Get:3 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1build3 (diff) [1268 kB] 241s gpgv: Signature made Tue Mar 4 15:51:08 2025 UTC 241s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 241s gpgv: Can't check signature: No public key 241s dpkg-source: warning: cannot verify inline signature for ./macs_3.0.2-1build3.dsc: no acceptable signature found 245s autopkgtest [01:32:31]: testing package macs version 3.0.2-1build3 247s autopkgtest [01:32:33]: build not needed 266s autopkgtest [01:32:52]: test run-unit-test: preparing testbed 268s Reading package lists... 268s Building dependency tree... 268s Reading state information... 268s Starting pkgProblemResolver with broken count: 0 268s Starting 2 pkgProblemResolver with broken count: 0 268s Done 269s The following NEW packages will be installed: 269s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 macs python3-cykhash 269s python3-decorator python3-hmmlearn python3-joblib python3-numpy 269s python3-numpy-dev python3-scipy python3-sklearn python3-sklearn-lib 269s python3-threadpoolctl 269s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 269s Need to get 33.5 MB of archives. 269s After this operation, 125 MB of additional disk space will be used. 269s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy-dev armhf 1:2.2.3+ds-5 [141 kB] 270s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB] 270s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB] 270s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 270s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:2.2.3+ds-5 [3725 kB] 271s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 271s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 271s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cykhash armhf 2.0.0-3build3 [487 kB] 271s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 271s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.14.1-4ubuntu2 [16.7 MB] 275s Get:11 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-joblib all 1.4.2-3 [205 kB] 275s Get:12 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-threadpoolctl all 3.1.0-1 [21.3 kB] 275s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-sklearn-lib armhf 1.4.2+dfsg-8 [4014 kB] 276s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 276s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-hmmlearn armhf 0.3.2-2build2 [120 kB] 276s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf macs armhf 3.0.2-1build3 [3130 kB] 277s Fetched 33.5 MB in 8s (4362 kB/s) 277s Selecting previously unselected package python3-numpy-dev:armhf. 278s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 278s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_armhf.deb ... 278s Unpacking python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 278s Selecting previously unselected package libblas3:armhf. 278s Preparing to unpack .../01-libblas3_3.12.1-2_armhf.deb ... 278s Unpacking libblas3:armhf (3.12.1-2) ... 278s Selecting previously unselected package libgfortran5:armhf. 278s Preparing to unpack .../02-libgfortran5_15-20250222-0ubuntu1_armhf.deb ... 278s Unpacking libgfortran5:armhf (15-20250222-0ubuntu1) ... 278s Selecting previously unselected package liblapack3:armhf. 278s Preparing to unpack .../03-liblapack3_3.12.1-2_armhf.deb ... 278s Unpacking liblapack3:armhf (3.12.1-2) ... 278s Selecting previously unselected package python3-numpy. 278s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_armhf.deb ... 278s Unpacking python3-numpy (1:2.2.3+ds-5) ... 278s Selecting previously unselected package libgomp1:armhf. 278s Preparing to unpack .../05-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 278s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 278s Selecting previously unselected package liblbfgsb0:armhf. 278s Preparing to unpack .../06-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 278s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 278s Selecting previously unselected package python3-cykhash. 278s Preparing to unpack .../07-python3-cykhash_2.0.0-3build3_armhf.deb ... 278s Unpacking python3-cykhash (2.0.0-3build3) ... 278s Selecting previously unselected package python3-decorator. 278s Preparing to unpack .../08-python3-decorator_5.1.1-5_all.deb ... 278s Unpacking python3-decorator (5.1.1-5) ... 278s Selecting previously unselected package python3-scipy. 278s Preparing to unpack .../09-python3-scipy_1.14.1-4ubuntu2_armhf.deb ... 278s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 279s Selecting previously unselected package python3-joblib. 279s Preparing to unpack .../10-python3-joblib_1.4.2-3_all.deb ... 279s Unpacking python3-joblib (1.4.2-3) ... 279s Selecting previously unselected package python3-threadpoolctl. 279s Preparing to unpack .../11-python3-threadpoolctl_3.1.0-1_all.deb ... 279s Unpacking python3-threadpoolctl (3.1.0-1) ... 279s Selecting previously unselected package python3-sklearn-lib:armhf. 279s Preparing to unpack .../12-python3-sklearn-lib_1.4.2+dfsg-8_armhf.deb ... 279s Unpacking python3-sklearn-lib:armhf (1.4.2+dfsg-8) ... 279s Selecting previously unselected package python3-sklearn. 279s Preparing to unpack .../13-python3-sklearn_1.4.2+dfsg-8_all.deb ... 279s Unpacking python3-sklearn (1.4.2+dfsg-8) ... 279s Selecting previously unselected package python3-hmmlearn. 279s Preparing to unpack .../14-python3-hmmlearn_0.3.2-2build2_armhf.deb ... 279s Unpacking python3-hmmlearn (0.3.2-2build2) ... 279s Selecting previously unselected package macs. 279s Preparing to unpack .../15-macs_3.0.2-1build3_armhf.deb ... 279s Unpacking macs (3.0.2-1build3) ... 279s Setting up python3-joblib (1.4.2-3) ... 280s Setting up python3-threadpoolctl (3.1.0-1) ... 280s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 280s Setting up python3-cykhash (2.0.0-3build3) ... 280s Setting up python3-decorator (5.1.1-5) ... 280s Setting up libblas3:armhf (3.12.1-2) ... 280s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 280s Setting up python3-numpy-dev:armhf (1:2.2.3+ds-5) ... 280s Setting up libgfortran5:armhf (15-20250222-0ubuntu1) ... 280s Setting up liblapack3:armhf (3.12.1-2) ... 280s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 280s Setting up python3-numpy (1:2.2.3+ds-5) ... 282s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 282s Setting up python3-scipy (1.14.1-4ubuntu2) ... 286s Setting up python3-sklearn-lib:armhf (1.4.2+dfsg-8) ... 286s Setting up python3-sklearn (1.4.2+dfsg-8) ... 288s Setting up python3-hmmlearn (0.3.2-2build2) ... 288s Setting up macs (3.0.2-1build3) ... 289s Processing triggers for man-db (2.13.0-1) ... 289s Processing triggers for libc-bin (2.41-1ubuntu1) ... 298s autopkgtest [01:33:24]: test run-unit-test: [----------------------- 300s + pkg=macs 300s + '[' /tmp/autopkgtest.jculXv/autopkgtest_tmp = '' ']' 300s + cp -a /usr/share/doc/macs/examples/aluY.chr1.bed.gz /usr/share/doc/macs/examples/gerp.chr1.bed.gz /tmp/autopkgtest.jculXv/autopkgtest_tmp 300s + cd /tmp/autopkgtest.jculXv/autopkgtest_tmp 300s + gunzip aluY.chr1.bed.gz gerp.chr1.bed.gz 300s + macs3 callpeak -t aluY.chr1.bed --nomodel -g hs -n test -B -q 0.01 300s INFO @ 16 Mar 2025 01:33:26: [21 MB] 300s # Command line: callpeak -t aluY.chr1.bed --nomodel -g hs -n test -B -q 0.01 300s # ARGUMENTS LIST: 300s # name = test 300s # format = AUTO 300s # ChIP-seq file = ['aluY.chr1.bed'] 300s # control file = None 300s # effective genome size = 2.91e+09 300s # band width = 300 300s # model fold = [5, 50] 300s # qvalue cutoff = 1.00e-02 300s # The maximum gap between significant sites is assigned as the read length/tag size. 300s # The minimum length of peaks is assigned as the predicted fragment length "d". 300s # Larger dataset will be scaled towards smaller dataset. 300s # Range for calculating regional lambda is: 10000 bps 300s # Broad region calling is off 300s # Paired-End mode is off 300s 300s INFO @ 16 Mar 2025 01:33:26: [21 MB] #1 read tag files... 300s INFO @ 16 Mar 2025 01:33:26: [21 MB] #1 read treatment tags... 300s INFO @ 16 Mar 2025 01:33:26: [21 MB] Detected format is: BED 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #1 tag size is determined as 294 bps 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #1 tag size = 294.0 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #1 total tags in treatment: 11628 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #1 user defined the maximum tags... 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #1 tags after filtering in treatment: 11628 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #1 Redundant rate of treatment: 0.00 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #1 finished! 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #2 Build Peak Model... 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #2 Skipped... 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #2 Use 200 as fragment length 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #3 Call peaks... 300s INFO @ 16 Mar 2025 01:33:26: [22 MB] #3 Pre-compute pvalue-qvalue table... 300s INFO @ 16 Mar 2025 01:33:26: [25 MB] #3 In the peak calling step, the following will be performed simultaneously: 300s INFO @ 16 Mar 2025 01:33:26: [25 MB] #3 Write bedGraph files for treatment pileup (after scaling if necessary)... test_treat_pileup.bdg 300s INFO @ 16 Mar 2025 01:33:26: [25 MB] #3 Write bedGraph files for control lambda (after scaling if necessary)... test_control_lambda.bdg 300s INFO @ 16 Mar 2025 01:33:26: [25 MB] #3 Pileup will be based on sequencing depth in treatment. 300s INFO @ 16 Mar 2025 01:33:26: [25 MB] #3 Call peaks for each chromosome... 300s INFO @ 16 Mar 2025 01:33:26: [25 MB] #4 Write output xls file... test_peaks.xls 300s INFO @ 16 Mar 2025 01:33:26: [25 MB] #4 Write peak in narrowPeak format file... test_peaks.narrowPeak 300s INFO @ 16 Mar 2025 01:33:26: [25 MB] #4 Write summits bed file... test_summits.bed 300s INFO @ 16 Mar 2025 01:33:26: [25 MB] Done! 300s + macs3 callpeak -t gerp.chr1.bed --nomodel --broad -g hs --broad-cutoff 0.1 301s INFO @ 16 Mar 2025 01:33:26: [21 MB] 301s # Command line: callpeak -t gerp.chr1.bed --nomodel --broad -g hs --broad-cutoff 0.1 301s # ARGUMENTS LIST: 301s # name = NA 301s # format = AUTO 301s # ChIP-seq file = ['gerp.chr1.bed'] 301s # control file = None 301s # effective genome size = 2.91e+09 301s # band width = 300 301s # model fold = [5, 50] 301s # qvalue cutoff for narrow/strong regions = 5.00e-02 301s # qvalue cutoff for broad/weak regions = 1.00e-01 301s # The maximum gap between significant sites is assigned as the read length/tag size. 301s # The minimum length of peaks is assigned as the predicted fragment length "d". 301s # Larger dataset will be scaled towards smaller dataset. 301s # Range for calculating regional lambda is: 10000 bps 301s # Broad region calling is on 301s # Paired-End mode is off 301s 301s INFO @ 16 Mar 2025 01:33:26: [21 MB] #1 read tag files... 301s INFO @ 16 Mar 2025 01:33:26: [21 MB] #1 read treatment tags... 301s INFO @ 16 Mar 2025 01:33:26: [21 MB] Detected format is: BED 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #1 tag size is determined as 181 bps 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #1 tag size = 181.0 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #1 total tags in treatment: 88292 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #1 user defined the maximum tags... 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #1 tags after filtering in treatment: 88292 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #1 Redundant rate of treatment: 0.00 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #1 finished! 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #2 Build Peak Model... 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #2 Skipped... 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #2 Use 200 as fragment length 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #3 Call peaks... 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #3 Call broad peaks with given level1 -log10qvalue cutoff and level2: 1.301030, 1.000000... 301s INFO @ 16 Mar 2025 01:33:27: [29 MB] #3 Pre-compute pvalue-qvalue table... 301s INFO @ 16 Mar 2025 01:33:27: [43 MB] #3 Call peaks for each chromosome... 301s INFO @ 16 Mar 2025 01:33:27: [43 MB] #4 Write output xls file... NA_peaks.xls 301s INFO @ 16 Mar 2025 01:33:27: [43 MB] #4 Write broad peak in broadPeak format file... NA_peaks.broadPeak 301s INFO @ 16 Mar 2025 01:33:27: [43 MB] #4 Write broad peak in bed12/gappedPeak format file... NA_peaks.gappedPeak 301s INFO @ 16 Mar 2025 01:33:27: [43 MB] Done! 301s autopkgtest [01:33:27]: test run-unit-test: -----------------------] 306s autopkgtest [01:33:32]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 306s run-unit-test PASS 311s autopkgtest [01:33:37]: @@@@@@@@@@@@@@@@@@@@ summary 311s run-unit-test PASS