0s autopkgtest [20:16:55]: starting date and time: 2024-11-15 20:16:55+0000 0s autopkgtest [20:16:55]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [20:16:55]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5wxah4_p/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:scikit-learn --apt-upgrade macs --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=scikit-learn/1.4.2+dfsg-6build1 -- lxd -r lxd-armhf-10.145.243.51 lxd-armhf-10.145.243.51:autopkgtest/ubuntu/plucky/armhf 53s autopkgtest [20:17:48]: testbed dpkg architecture: armhf 55s autopkgtest [20:17:50]: testbed apt version: 2.9.8 55s autopkgtest [20:17:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 63s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [1043 kB] 63s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [92.2 kB] 63s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 63s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.5 kB] 63s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [143 kB] 63s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [747 kB] 63s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4428 B] 63s Fetched 2126 kB in 1s (2233 kB/s) 63s Reading package lists... 80s tee: /proc/self/fd/2: Permission denied 103s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 103s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 103s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 105s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s Calculating upgrade... 107s The following NEW packages will be installed: 107s libassuan9 107s The following packages will be upgraded: 107s libgpgme11t64 libseccomp2 python3-cffi-backend python3-markupsafe 107s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 297 kB of archives. 107s After this operation, 224 kB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libseccomp2 armhf 2.5.5-1ubuntu5 [49.3 kB] 107s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2build1 [75.9 kB] 107s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libassuan9 armhf 3.0.1-2 [34.3 kB] 107s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.24.0-2ubuntu1 [125 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-markupsafe armhf 2.1.5-1build3 [12.5 kB] 108s Fetched 297 kB in 0s (622 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 108s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu5_armhf.deb ... 108s Unpacking libseccomp2:armhf (2.5.5-1ubuntu5) over (2.5.5-1ubuntu4) ... 108s Setting up libseccomp2:armhf (2.5.5-1ubuntu5) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59566 files and directories currently installed.) 108s Preparing to unpack .../python3-cffi-backend_1.17.1-2build1_armhf.deb ... 108s Unpacking python3-cffi-backend:armhf (1.17.1-2build1) over (1.17.1-2) ... 108s Selecting previously unselected package libassuan9:armhf. 108s Preparing to unpack .../libassuan9_3.0.1-2_armhf.deb ... 108s Unpacking libassuan9:armhf (3.0.1-2) ... 108s Preparing to unpack .../libgpgme11t64_1.24.0-2ubuntu1_armhf.deb ... 108s Unpacking libgpgme11t64:armhf (1.24.0-2ubuntu1) over (1.23.2-5ubuntu4) ... 108s Preparing to unpack .../python3-markupsafe_2.1.5-1build3_armhf.deb ... 108s Unpacking python3-markupsafe (2.1.5-1build3) over (2.1.5-1build2) ... 108s Setting up python3-markupsafe (2.1.5-1build3) ... 108s Setting up libassuan9:armhf (3.0.1-2) ... 108s Setting up libgpgme11t64:armhf (1.24.0-2ubuntu1) ... 108s Setting up python3-cffi-backend:armhf (1.17.1-2build1) ... 108s Processing triggers for libc-bin (2.40-1ubuntu3) ... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s autopkgtest [20:18:47]: rebooting testbed after setup commands that affected boot 180s autopkgtest [20:19:55]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 207s autopkgtest [20:20:22]: @@@@@@@@@@@@@@@@@@@@ apt-source macs 222s Get:1 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1 (dsc) [2152 B] 222s Get:2 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1 (tar) [197 MB] 222s Get:3 http://ftpmaster.internal/ubuntu plucky/universe macs 3.0.2-1 (diff) [1268 kB] 223s gpgv: Signature made Sat Sep 7 23:10:03 2024 UTC 223s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 223s gpgv: Can't check signature: No public key 223s dpkg-source: warning: cannot verify inline signature for ./macs_3.0.2-1.dsc: no acceptable signature found 228s autopkgtest [20:20:43]: testing package macs version 3.0.2-1 230s autopkgtest [20:20:45]: build not needed 243s autopkgtest [20:20:58]: test run-unit-test: preparing testbed 255s Reading package lists... 256s Building dependency tree... 256s Reading state information... 256s Starting pkgProblemResolver with broken count: 0 256s Starting 2 pkgProblemResolver with broken count: 0 256s Done 257s The following additional packages will be installed: 257s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 macs python3-cykhash 257s python3-decorator python3-hmmlearn python3-joblib python3-numpy 257s python3-scipy python3-sklearn python3-sklearn-lib python3-threadpoolctl 257s Suggested packages: 257s python-joblib-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 257s python-scipy-doc python3-dap python-sklearn-doc ipython3 257s Recommended packages: 257s python3-pytest python3-simplejson python3-psutil g++ | c++-compiler 257s python3-pil python3-matplotlib 257s The following NEW packages will be installed: 257s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 macs 257s python3-cykhash python3-decorator python3-hmmlearn python3-joblib 257s python3-numpy python3-scipy python3-sklearn python3-sklearn-lib 257s python3-threadpoolctl 257s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 257s Need to get 35.1 MB/35.1 MB of archives. 257s After this operation, 128 MB of additional disk space will be used. 257s Get:1 /tmp/autopkgtest.LZ6Gom/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 258s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 258s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 258s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 258s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 258s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 258s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB] 258s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cykhash armhf 2.0.0-3build1 [455 kB] 258s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 258s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB] 259s Get:11 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-joblib all 1.3.2-5 [206 kB] 259s Get:12 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-threadpoolctl all 3.1.0-1 [21.3 kB] 259s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-sklearn-lib armhf 1.4.2+dfsg-6build1 [6321 kB] 259s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-sklearn all 1.4.2+dfsg-6build1 [2257 kB] 259s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-hmmlearn armhf 0.3.2-2 [120 kB] 259s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf macs armhf 3.0.2-1 [3102 kB] 260s Fetched 35.1 MB in 2s (21.2 MB/s) 260s Selecting previously unselected package libblas3:armhf. 260s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59573 files and directories currently installed.) 260s Preparing to unpack .../00-libblas3_3.12.0-3build2_armhf.deb ... 260s Unpacking libblas3:armhf (3.12.0-3build2) ... 260s Selecting previously unselected package libgfortran5:armhf. 260s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 260s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 260s Selecting previously unselected package libgomp1:armhf. 260s Preparing to unpack .../02-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 260s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 260s Selecting previously unselected package liblapack3:armhf. 260s Preparing to unpack .../03-liblapack3_3.12.0-3build2_armhf.deb ... 260s Unpacking liblapack3:armhf (3.12.0-3build2) ... 260s Selecting previously unselected package liblbfgsb0:armhf. 260s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 260s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 260s Selecting previously unselected package python3-numpy. 260s Preparing to unpack .../05-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ... 260s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 261s Selecting previously unselected package python3-cykhash. 261s Preparing to unpack .../06-python3-cykhash_2.0.0-3build1_armhf.deb ... 261s Unpacking python3-cykhash (2.0.0-3build1) ... 261s Selecting previously unselected package python3-decorator. 261s Preparing to unpack .../07-python3-decorator_5.1.1-5_all.deb ... 261s Unpacking python3-decorator (5.1.1-5) ... 261s Selecting previously unselected package python3-scipy. 261s Preparing to unpack .../08-python3-scipy_1.13.1-5_armhf.deb ... 261s Unpacking python3-scipy (1.13.1-5) ... 262s Selecting previously unselected package python3-joblib. 262s Preparing to unpack .../09-python3-joblib_1.3.2-5_all.deb ... 262s Unpacking python3-joblib (1.3.2-5) ... 262s Selecting previously unselected package python3-threadpoolctl. 262s Preparing to unpack .../10-python3-threadpoolctl_3.1.0-1_all.deb ... 262s Unpacking python3-threadpoolctl (3.1.0-1) ... 262s Selecting previously unselected package python3-sklearn-lib:armhf. 262s Preparing to unpack .../11-python3-sklearn-lib_1.4.2+dfsg-6build1_armhf.deb ... 262s Unpacking python3-sklearn-lib:armhf (1.4.2+dfsg-6build1) ... 262s Selecting previously unselected package python3-sklearn. 262s Preparing to unpack .../12-python3-sklearn_1.4.2+dfsg-6build1_all.deb ... 262s Unpacking python3-sklearn (1.4.2+dfsg-6build1) ... 263s Selecting previously unselected package python3-hmmlearn. 263s Preparing to unpack .../13-python3-hmmlearn_0.3.2-2_armhf.deb ... 263s Unpacking python3-hmmlearn (0.3.2-2) ... 263s Selecting previously unselected package macs. 263s Preparing to unpack .../14-macs_3.0.2-1_armhf.deb ... 263s Unpacking macs (3.0.2-1) ... 263s Selecting previously unselected package autopkgtest-satdep. 263s Preparing to unpack .../15-1-autopkgtest-satdep.deb ... 263s Unpacking autopkgtest-satdep (0) ... 263s Setting up python3-joblib (1.3.2-5) ... 263s Setting up python3-threadpoolctl (3.1.0-1) ... 264s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 264s Setting up python3-cykhash (2.0.0-3build1) ... 264s Setting up python3-decorator (5.1.1-5) ... 264s Setting up libblas3:armhf (3.12.0-3build2) ... 264s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 264s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 264s Setting up liblapack3:armhf (3.12.0-3build2) ... 264s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 264s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 267s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 267s Setting up python3-scipy (1.13.1-5) ... 271s Setting up python3-sklearn-lib:armhf (1.4.2+dfsg-6build1) ... 271s Setting up python3-sklearn (1.4.2+dfsg-6build1) ... 274s Setting up python3-hmmlearn (0.3.2-2) ... 275s Setting up macs (3.0.2-1) ... 275s Setting up autopkgtest-satdep (0) ... 275s Processing triggers for man-db (2.13.0-1) ... 276s Processing triggers for libc-bin (2.40-1ubuntu3) ... 287s (Reading database ... 63200 files and directories currently installed.) 287s Removing autopkgtest-satdep (0) ... 293s autopkgtest [20:21:48]: test run-unit-test: [----------------------- 295s + pkg=macs 295s + '[' /tmp/autopkgtest.LZ6Gom/autopkgtest_tmp = '' ']' 295s + cp -a /usr/share/doc/macs/examples/aluY.chr1.bed.gz /usr/share/doc/macs/examples/gerp.chr1.bed.gz /tmp/autopkgtest.LZ6Gom/autopkgtest_tmp 295s + cd /tmp/autopkgtest.LZ6Gom/autopkgtest_tmp 295s + gunzip aluY.chr1.bed.gz gerp.chr1.bed.gz 295s + macs3 callpeak -t aluY.chr1.bed --nomodel -g hs -n test -B -q 0.01 295s INFO @ 15 Nov 2024 20:21:50: [27 MB] 295s # Command line: callpeak -t aluY.chr1.bed --nomodel -g hs -n test -B -q 0.01 295s # ARGUMENTS LIST: 295s # name = test 295s # format = AUTO 295s # ChIP-seq file = ['aluY.chr1.bed'] 295s # control file = None 295s # effective genome size = 2.91e+09 295s # band width = 300 295s # model fold = [5, 50] 295s # qvalue cutoff = 1.00e-02 295s # The maximum gap between significant sites is assigned as the read length/tag size. 295s # The minimum length of peaks is assigned as the predicted fragment length "d". 295s # Larger dataset will be scaled towards smaller dataset. 295s # Range for calculating regional lambda is: 10000 bps 295s # Broad region calling is off 295s # Paired-End mode is off 295s 295s INFO @ 15 Nov 2024 20:21:50: [27 MB] #1 read tag files... 295s INFO @ 15 Nov 2024 20:21:50: [27 MB] #1 read treatment tags... 296s INFO @ 15 Nov 2024 20:21:50: [27 MB] Detected format is: BED 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #1 tag size is determined as 294 bps 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #1 tag size = 294.0 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #1 total tags in treatment: 11628 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #1 user defined the maximum tags... 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #1 tags after filtering in treatment: 11628 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #1 Redundant rate of treatment: 0.00 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #1 finished! 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #2 Build Peak Model... 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #2 Skipped... 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #2 Use 200 as fragment length 296s INFO @ 15 Nov 2024 20:21:50: [28 MB] #3 Call peaks... 296s INFO @ 15 Nov 2024 20:21:50: [29 MB] #3 Pre-compute pvalue-qvalue table... 296s INFO @ 15 Nov 2024 20:21:51: [31 MB] #3 In the peak calling step, the following will be performed simultaneously: 296s INFO @ 15 Nov 2024 20:21:51: [31 MB] #3 Write bedGraph files for treatment pileup (after scaling if necessary)... test_treat_pileup.bdg 296s INFO @ 15 Nov 2024 20:21:51: [31 MB] #3 Write bedGraph files for control lambda (after scaling if necessary)... test_control_lambda.bdg 296s INFO @ 15 Nov 2024 20:21:51: [31 MB] #3 Pileup will be based on sequencing depth in treatment. 296s INFO @ 15 Nov 2024 20:21:51: [31 MB] #3 Call peaks for each chromosome... 296s INFO @ 15 Nov 2024 20:21:51: [31 MB] #4 Write output xls file... test_peaks.xls 296s INFO @ 15 Nov 2024 20:21:51: [31 MB] #4 Write peak in narrowPeak format file... test_peaks.narrowPeak 296s INFO @ 15 Nov 2024 20:21:51: [31 MB] #4 Write summits bed file... test_summits.bed 296s INFO @ 15 Nov 2024 20:21:51: [31 MB] Done! 296s + macs3 callpeak -t gerp.chr1.bed --nomodel --broad -g hs --broad-cutoff 0.1 296s INFO @ 15 Nov 2024 20:21:51: [27 MB] 296s # Command line: callpeak -t gerp.chr1.bed --nomodel --broad -g hs --broad-cutoff 0.1 296s # ARGUMENTS LIST: 296s # name = NA 296s # format = AUTO 296s # ChIP-seq file = ['gerp.chr1.bed'] 296s # control file = None 296s # effective genome size = 2.91e+09 296s # band width = 300 296s # model fold = [5, 50] 296s # qvalue cutoff for narrow/strong regions = 5.00e-02 296s # qvalue cutoff for broad/weak regions = 1.00e-01 296s # The maximum gap between significant sites is assigned as the read length/tag size. 296s # The minimum length of peaks is assigned as the predicted fragment length "d". 296s # Larger dataset will be scaled towards smaller dataset. 296s # Range for calculating regional lambda is: 10000 bps 296s # Broad region calling is on 296s # Paired-End mode is off 296s 296s INFO @ 15 Nov 2024 20:21:51: [27 MB] #1 read tag files... 296s INFO @ 15 Nov 2024 20:21:51: [27 MB] #1 read treatment tags... 296s INFO @ 15 Nov 2024 20:21:51: [27 MB] Detected format is: BED 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #1 tag size is determined as 181 bps 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #1 tag size = 181.0 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #1 total tags in treatment: 88292 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #1 user defined the maximum tags... 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #1 tags after filtering in treatment: 88292 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #1 Redundant rate of treatment: 0.00 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #1 finished! 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #2 Build Peak Model... 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #2 Skipped... 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #2 Use 200 as fragment length 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #3 Call peaks... 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #3 Call broad peaks with given level1 -log10qvalue cutoff and level2: 1.301030, 1.000000... 296s INFO @ 15 Nov 2024 20:21:51: [35 MB] #3 Pre-compute pvalue-qvalue table... 296s INFO @ 15 Nov 2024 20:21:51: [49 MB] #3 Call peaks for each chromosome... 296s INFO @ 15 Nov 2024 20:21:51: [49 MB] #4 Write output xls file... NA_peaks.xls 296s INFO @ 15 Nov 2024 20:21:51: [49 MB] #4 Write broad peak in broadPeak format file... NA_peaks.broadPeak 296s INFO @ 15 Nov 2024 20:21:51: [49 MB] #4 Write broad peak in bed12/gappedPeak format file... NA_peaks.gappedPeak 296s INFO @ 15 Nov 2024 20:21:51: [49 MB] Done! 297s autopkgtest [20:21:52]: test run-unit-test: -----------------------] 301s autopkgtest [20:21:56]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 301s run-unit-test PASS 305s autopkgtest [20:22:00]: @@@@@@@@@@@@@@@@@@@@ summary 305s run-unit-test PASS