0s autopkgtest [01:17:56]: starting date and time: 2025-03-16 01:17:56+0000 0s autopkgtest [01:17:56]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [01:17:56]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.okyj9z_4/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:libpng1.6 --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=libpng1.6/1.6.47-1.1 -- lxd -r lxd-armhf-10.145.243.207 lxd-armhf-10.145.243.207:autopkgtest/ubuntu/plucky/armhf 33s autopkgtest [01:18:29]: testbed dpkg architecture: armhf 37s autopkgtest [01:18:33]: testbed apt version: 2.9.33 43s autopkgtest [01:18:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 46s autopkgtest [01:18:42]: testbed release detected to be: None 57s autopkgtest [01:18:53]: updating testbed package index (apt update) 59s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 60s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 60s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 60s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 60s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 61s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 61s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 61s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [74.9 kB] 61s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1792 B] 61s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 61s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [290 kB] 61s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [10.5 kB] 61s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4168 B] 61s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 61s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 61s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 70s Get:17 http://ftpmaster.internal/ubuntu plucky/main Sources [1389 kB] 70s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 71s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.5 kB] 71s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 71s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.3 MB] 79s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 81s Fetched 41.1 MB in 22s (1911 kB/s) 83s Reading package lists... 88s autopkgtest [01:19:24]: upgrading testbed (apt dist-upgrade and autopurge) 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 91s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 91s Starting 2 pkgProblemResolver with broken count: 0 91s Done 92s Entering ResolveByKeep 92s 92s Calculating upgrade... 93s The following packages will be upgraded: 93s libpng16-16t64 pinentry-curses python3-jinja2 sos strace 93s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Need to get 1128 kB of archives. 93s After this operation, 23.6 kB of additional disk space will be used. 93s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpng16-16t64 armhf 1.6.47-1.1 [168 kB] 93s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 94s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 94s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 94s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 95s Fetched 1128 kB in 2s (704 kB/s) 95s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 95s Preparing to unpack .../libpng16-16t64_1.6.47-1.1_armhf.deb ... 95s Unpacking libpng16-16t64:armhf (1.6.47-1.1) over (1.6.47-1) ... 95s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 95s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 95s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 95s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 95s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 95s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 95s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 95s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 95s Setting up sos (4.9.0-5) ... 96s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 96s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 96s Setting up strace (6.13+ds-1ubuntu1) ... 96s Setting up libpng16-16t64:armhf (1.6.47-1.1) ... 96s Processing triggers for man-db (2.13.0-1) ... 97s Processing triggers for libc-bin (2.41-1ubuntu1) ... 101s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Starting pkgProblemResolver with broken count: 0 102s Starting 2 pkgProblemResolver with broken count: 0 102s Done 102s Solving dependencies... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s autopkgtest [01:19:42]: rebooting testbed after setup commands that affected boot 162s autopkgtest [01:20:38]: testbed running kernel: Linux 6.8.0-52-generic #53~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Jan 15 18:10:51 UTC 2 206s autopkgtest [01:21:22]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 326s Get:1 http://ftpmaster.internal/ubuntu plucky/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 326s Get:2 http://ftpmaster.internal/ubuntu plucky/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 326s Get:3 http://ftpmaster.internal/ubuntu plucky/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 327s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 327s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 327s gpgv: Can't check signature: No public key 327s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 331s autopkgtest [01:23:27]: testing package lammps version 20240207+dfsg-3build3 333s autopkgtest [01:23:29]: build not needed 356s autopkgtest [01:23:52]: test crack: preparing testbed 357s Reading package lists... 358s Building dependency tree... 358s Reading state information... 358s Starting pkgProblemResolver with broken count: 0 358s Starting 2 pkgProblemResolver with broken count: 0 358s Done 359s The following NEW packages will be installed: 359s fontconfig-config fonts-dejavu-core fonts-dejavu-mono hwloc-nox lammps 359s lammps-data libaec0 libblas3 libcairo2 libdeflate0 libdouble-conversion3 359s libfftw3-double3 libfontconfig1 libfreetype6 libgbm1 libgfortran5 libgl1 359s libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 libglx-mesa0 libglx0 359s libgomp1 libhdf5-310 libhdf5-hl-310 libhwloc15 libjbig0 libjpeg-turbo8 359s libjpeg8 libjsoncpp26 libkim-api2 liblammps0t64 liblapack3 liblerc4 359s libllvm19 libmpich12 libnetcdf22 libogg0 libopengl0 libpixman-1-0 libproj25 359s libpython3.13 libsharpyuv0 libslurm42t64 libsz2 libtbb12 libtbbbind-2-5 359s libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 359s libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 359s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 359s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxrender1 libxshmfence1 359s libxss1 libxxf86vm1 mesa-libgallium mpi-default-bin mpich proj-data 359s x11-common 359s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. 359s Need to get 101 MB of archives. 359s After this operation, 389 MB of additional disk space will be used. 359s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 360s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 361s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-2ubuntu1 [37.5 kB] 361s Get:4 http://ftpmaster.internal/ubuntu plucky/universe armhf lammps-data all 20240207+dfsg-3build3 [9732 kB] 369s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 369s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB] 369s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 370s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-2ubuntu1 [114 kB] 370s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 370s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 370s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 370s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 370s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 371s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 371s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf libdouble-conversion3 armhf 3.3.1-1 [39.1 kB] 371s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 371s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libfftw3-double3 armhf 3.3.10-2fakesync1build1 [369 kB] 371s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-server0 armhf 1.23.1-3 [30.3 kB] 372s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libllvm19 armhf 1:19.1.7-1ubuntu2 [27.8 MB] 393s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B] 394s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 394s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 394s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 394s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 394s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 394s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libxshmfence1 armhf 1.3-1build5 [4464 B] 394s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf mesa-libgallium armhf 25.0.1-2ubuntu1 [8255 kB] 400s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libgbm1 armhf 25.0.1-2ubuntu1 [29.1 kB] 400s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB] 400s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libvulkan1 armhf 1.4.304.0-1 [127 kB] 401s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1-mesa-dri armhf 25.0.1-2ubuntu1 [31.9 kB] 401s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 401s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 401s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 402s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libglx-mesa0 armhf 25.0.1-2ubuntu1 [120 kB] 402s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 402s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 402s Get:38 http://ftpmaster.internal/ubuntu plucky/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB] 402s Get:39 http://ftpmaster.internal/ubuntu plucky/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 402s Get:40 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 402s Get:41 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB] 403s Get:42 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [58.8 kB] 403s Get:43 http://ftpmaster.internal/ubuntu plucky/universe armhf libhwloc15 armhf 2.12.0-1 [147 kB] 403s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 403s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 403s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libjsoncpp26 armhf 1.9.6-3 [75.5 kB] 403s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf libkim-api2 armhf 2.3.0-1ubuntu1 [566 kB] 404s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 406s Get:49 http://ftpmaster.internal/ubuntu plucky/universe armhf libmpich12 armhf 4.2.1-5 [1574 kB] 411s Get:50 http://ftpmaster.internal/ubuntu plucky/universe armhf libnetcdf22 armhf 1:4.9.3-1 [459 kB] 411s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13 armhf 3.13.2-2 [2079 kB] 411s Get:52 http://ftpmaster.internal/ubuntu plucky/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 411s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB] 411s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 411s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf proj-data all 9.5.1-1 [7924 kB] 417s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 417s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 417s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 417s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 418s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 418s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf libproj25 armhf 9.5.1-1 [1331 kB] 419s Get:62 http://ftpmaster.internal/ubuntu plucky/universe armhf libtbbbind-2-5 armhf 2022.0.0-2 [13.8 kB] 419s Get:63 http://ftpmaster.internal/ubuntu plucky/universe armhf libtbbmalloc2 armhf 2022.0.0-2 [47.0 kB] 420s Get:64 http://ftpmaster.internal/ubuntu plucky/universe armhf libtbb12 armhf 2022.0.0-2 [80.8 kB] 420s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 420s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libtheoradec1 armhf 1.2.0~alpha1+dfsg-5 [45.7 kB] 420s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libtheoraenc1 armhf 1.2.0~alpha1+dfsg-5 [89.3 kB] 421s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 421s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 421s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 421s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 423s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf libvtk9.3 armhf 9.3.0+dfsg1-4ubuntu1 [21.9 MB] 439s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf liblammps0t64 armhf 20240207+dfsg-3build3 [6801 kB] 444s Get:74 http://ftpmaster.internal/ubuntu plucky/universe armhf libslurm42t64 armhf 24.11.1-1 [769 kB] 445s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf hwloc-nox armhf 2.12.0-1 [213 kB] 445s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf mpich armhf 4.2.1-5 [214 kB] 446s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf mpi-default-bin armhf 1.18 [2504 B] 446s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf lammps armhf 20240207+dfsg-3build3 [14.7 kB] 446s Fetched 101 MB in 1min 27s (1163 kB/s) 446s Selecting previously unselected package fonts-dejavu-mono. 446s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 446s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 446s Unpacking fonts-dejavu-mono (2.37-8) ... 446s Selecting previously unselected package fonts-dejavu-core. 446s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 446s Unpacking fonts-dejavu-core (2.37-8) ... 447s Selecting previously unselected package fontconfig-config. 447s Preparing to unpack .../02-fontconfig-config_2.15.0-2ubuntu1_armhf.deb ... 447s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 447s Selecting previously unselected package lammps-data. 447s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 447s Unpacking lammps-data (20240207+dfsg-3build3) ... 447s Selecting previously unselected package libaec0:armhf. 447s Preparing to unpack .../04-libaec0_1.1.3-1_armhf.deb ... 447s Unpacking libaec0:armhf (1.1.3-1) ... 447s Selecting previously unselected package libblas3:armhf. 447s Preparing to unpack .../05-libblas3_3.12.1-2_armhf.deb ... 447s Unpacking libblas3:armhf (3.12.1-2) ... 447s Selecting previously unselected package libfreetype6:armhf. 447s Preparing to unpack .../06-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 447s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 447s Selecting previously unselected package libfontconfig1:armhf. 447s Preparing to unpack .../07-libfontconfig1_2.15.0-2ubuntu1_armhf.deb ... 447s Unpacking libfontconfig1:armhf (2.15.0-2ubuntu1) ... 447s Selecting previously unselected package libpixman-1-0:armhf. 447s Preparing to unpack .../08-libpixman-1-0_0.44.0-3_armhf.deb ... 447s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 447s Selecting previously unselected package libxcb-render0:armhf. 447s Preparing to unpack .../09-libxcb-render0_1.17.0-2_armhf.deb ... 447s Unpacking libxcb-render0:armhf (1.17.0-2) ... 447s Selecting previously unselected package libxcb-shm0:armhf. 447s Preparing to unpack .../10-libxcb-shm0_1.17.0-2_armhf.deb ... 447s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 447s Selecting previously unselected package libxrender1:armhf. 447s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 447s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 447s Selecting previously unselected package libcairo2:armhf. 447s Preparing to unpack .../12-libcairo2_1.18.2-2_armhf.deb ... 447s Unpacking libcairo2:armhf (1.18.2-2) ... 447s Selecting previously unselected package libdeflate0:armhf. 447s Preparing to unpack .../13-libdeflate0_1.23-1_armhf.deb ... 447s Unpacking libdeflate0:armhf (1.23-1) ... 448s Selecting previously unselected package libdouble-conversion3:armhf. 448s Preparing to unpack .../14-libdouble-conversion3_3.3.1-1_armhf.deb ... 448s Unpacking libdouble-conversion3:armhf (3.3.1-1) ... 448s Selecting previously unselected package libgomp1:armhf. 448s Preparing to unpack .../15-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 448s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 448s Selecting previously unselected package libfftw3-double3:armhf. 448s Preparing to unpack .../16-libfftw3-double3_3.3.10-2fakesync1build1_armhf.deb ... 448s Unpacking libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 448s Selecting previously unselected package libwayland-server0:armhf. 448s Preparing to unpack .../17-libwayland-server0_1.23.1-3_armhf.deb ... 448s Unpacking libwayland-server0:armhf (1.23.1-3) ... 448s Selecting previously unselected package libllvm19:armhf. 448s Preparing to unpack .../18-libllvm19_1%3a19.1.7-1ubuntu2_armhf.deb ... 448s Unpacking libllvm19:armhf (1:19.1.7-1ubuntu2) ... 449s Selecting previously unselected package libx11-xcb1:armhf. 449s Preparing to unpack .../19-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... 449s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... 449s Selecting previously unselected package libxcb-dri3-0:armhf. 449s Preparing to unpack .../20-libxcb-dri3-0_1.17.0-2_armhf.deb ... 449s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 449s Selecting previously unselected package libxcb-present0:armhf. 449s Preparing to unpack .../21-libxcb-present0_1.17.0-2_armhf.deb ... 449s Unpacking libxcb-present0:armhf (1.17.0-2) ... 449s Selecting previously unselected package libxcb-randr0:armhf. 449s Preparing to unpack .../22-libxcb-randr0_1.17.0-2_armhf.deb ... 449s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 449s Selecting previously unselected package libxcb-sync1:armhf. 449s Preparing to unpack .../23-libxcb-sync1_1.17.0-2_armhf.deb ... 449s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 449s Selecting previously unselected package libxcb-xfixes0:armhf. 449s Preparing to unpack .../24-libxcb-xfixes0_1.17.0-2_armhf.deb ... 449s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 449s Selecting previously unselected package libxshmfence1:armhf. 449s Preparing to unpack .../25-libxshmfence1_1.3-1build5_armhf.deb ... 449s Unpacking libxshmfence1:armhf (1.3-1build5) ... 449s Selecting previously unselected package mesa-libgallium:armhf. 449s Preparing to unpack .../26-mesa-libgallium_25.0.1-2ubuntu1_armhf.deb ... 449s Unpacking mesa-libgallium:armhf (25.0.1-2ubuntu1) ... 449s Selecting previously unselected package libgbm1:armhf. 449s Preparing to unpack .../27-libgbm1_25.0.1-2ubuntu1_armhf.deb ... 449s Unpacking libgbm1:armhf (25.0.1-2ubuntu1) ... 449s Selecting previously unselected package libgfortran5:armhf. 449s Preparing to unpack .../28-libgfortran5_15-20250222-0ubuntu1_armhf.deb ... 449s Unpacking libgfortran5:armhf (15-20250222-0ubuntu1) ... 449s Selecting previously unselected package libvulkan1:armhf. 449s Preparing to unpack .../29-libvulkan1_1.4.304.0-1_armhf.deb ... 449s Unpacking libvulkan1:armhf (1.4.304.0-1) ... 449s Selecting previously unselected package libgl1-mesa-dri:armhf. 449s Preparing to unpack .../30-libgl1-mesa-dri_25.0.1-2ubuntu1_armhf.deb ... 449s Unpacking libgl1-mesa-dri:armhf (25.0.1-2ubuntu1) ... 449s Selecting previously unselected package libglvnd0:armhf. 449s Preparing to unpack .../31-libglvnd0_1.7.0-1build1_armhf.deb ... 449s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 449s Selecting previously unselected package libxcb-glx0:armhf. 449s Preparing to unpack .../32-libxcb-glx0_1.17.0-2_armhf.deb ... 449s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 449s Selecting previously unselected package libxxf86vm1:armhf. 449s Preparing to unpack .../33-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 449s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 449s Selecting previously unselected package libglx-mesa0:armhf. 449s Preparing to unpack .../34-libglx-mesa0_25.0.1-2ubuntu1_armhf.deb ... 449s Unpacking libglx-mesa0:armhf (25.0.1-2ubuntu1) ... 449s Selecting previously unselected package libglx0:armhf. 449s Preparing to unpack .../35-libglx0_1.7.0-1build1_armhf.deb ... 449s Unpacking libglx0:armhf (1.7.0-1build1) ... 449s Selecting previously unselected package libgl1:armhf. 449s Preparing to unpack .../36-libgl1_1.7.0-1build1_armhf.deb ... 449s Unpacking libgl1:armhf (1.7.0-1build1) ... 449s Selecting previously unselected package libgl2ps1.4. 449s Preparing to unpack .../37-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ... 449s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 449s Selecting previously unselected package libglew2.2:armhf. 449s Preparing to unpack .../38-libglew2.2_2.2.0-4build1_armhf.deb ... 449s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 449s Selecting previously unselected package libsz2:armhf. 449s Preparing to unpack .../39-libsz2_1.1.3-1_armhf.deb ... 449s Unpacking libsz2:armhf (1.1.3-1) ... 450s Selecting previously unselected package libhdf5-310:armhf. 450s Preparing to unpack .../40-libhdf5-310_1.14.5+repack-3_armhf.deb ... 450s Unpacking libhdf5-310:armhf (1.14.5+repack-3) ... 450s Selecting previously unselected package libhdf5-hl-310:armhf. 450s Preparing to unpack .../41-libhdf5-hl-310_1.14.5+repack-3_armhf.deb ... 450s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3) ... 450s Selecting previously unselected package libhwloc15:armhf. 450s Preparing to unpack .../42-libhwloc15_2.12.0-1_armhf.deb ... 450s Unpacking libhwloc15:armhf (2.12.0-1) ... 450s Selecting previously unselected package libjpeg-turbo8:armhf. 450s Preparing to unpack .../43-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 450s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 450s Selecting previously unselected package libjpeg8:armhf. 450s Preparing to unpack .../44-libjpeg8_8c-2ubuntu11_armhf.deb ... 450s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 450s Selecting previously unselected package libjsoncpp26:armhf. 450s Preparing to unpack .../45-libjsoncpp26_1.9.6-3_armhf.deb ... 450s Unpacking libjsoncpp26:armhf (1.9.6-3) ... 450s Selecting previously unselected package libkim-api2:armhf. 450s Preparing to unpack .../46-libkim-api2_2.3.0-1ubuntu1_armhf.deb ... 450s Unpacking libkim-api2:armhf (2.3.0-1ubuntu1) ... 450s Selecting previously unselected package liblapack3:armhf. 450s Preparing to unpack .../47-liblapack3_3.12.1-2_armhf.deb ... 450s Unpacking liblapack3:armhf (3.12.1-2) ... 450s Selecting previously unselected package libmpich12:armhf. 450s Preparing to unpack .../48-libmpich12_4.2.1-5_armhf.deb ... 450s Unpacking libmpich12:armhf (4.2.1-5) ... 450s Selecting previously unselected package libnetcdf22:armhf. 450s Preparing to unpack .../49-libnetcdf22_1%3a4.9.3-1_armhf.deb ... 450s Unpacking libnetcdf22:armhf (1:4.9.3-1) ... 450s Selecting previously unselected package libpython3.13:armhf. 450s Preparing to unpack .../50-libpython3.13_3.13.2-2_armhf.deb ... 450s Unpacking libpython3.13:armhf (3.13.2-2) ... 450s Selecting previously unselected package libvoro++1. 450s Preparing to unpack .../51-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 450s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 450s Selecting previously unselected package libogg0:armhf. 450s Preparing to unpack .../52-libogg0_1.3.5-3build1_armhf.deb ... 450s Unpacking libogg0:armhf (1.3.5-3build1) ... 450s Selecting previously unselected package libopengl0:armhf. 450s Preparing to unpack .../53-libopengl0_1.7.0-1build1_armhf.deb ... 450s Unpacking libopengl0:armhf (1.7.0-1build1) ... 450s Selecting previously unselected package proj-data. 450s Preparing to unpack .../54-proj-data_9.5.1-1_all.deb ... 450s Unpacking proj-data (9.5.1-1) ... 450s Selecting previously unselected package libjbig0:armhf. 451s Preparing to unpack .../55-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 451s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 451s Selecting previously unselected package liblerc4:armhf. 451s Preparing to unpack .../56-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 451s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 451s Selecting previously unselected package libsharpyuv0:armhf. 451s Preparing to unpack .../57-libsharpyuv0_1.5.0-0.1_armhf.deb ... 451s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 451s Selecting previously unselected package libwebp7:armhf. 451s Preparing to unpack .../58-libwebp7_1.5.0-0.1_armhf.deb ... 451s Unpacking libwebp7:armhf (1.5.0-0.1) ... 451s Selecting previously unselected package libtiff6:armhf. 451s Preparing to unpack .../59-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 451s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 451s Selecting previously unselected package libproj25:armhf. 451s Preparing to unpack .../60-libproj25_9.5.1-1_armhf.deb ... 451s Unpacking libproj25:armhf (9.5.1-1) ... 451s Selecting previously unselected package libtbbbind-2-5:armhf. 451s Preparing to unpack .../61-libtbbbind-2-5_2022.0.0-2_armhf.deb ... 451s Unpacking libtbbbind-2-5:armhf (2022.0.0-2) ... 451s Selecting previously unselected package libtbbmalloc2:armhf. 451s Preparing to unpack .../62-libtbbmalloc2_2022.0.0-2_armhf.deb ... 451s Unpacking libtbbmalloc2:armhf (2022.0.0-2) ... 451s Selecting previously unselected package libtbb12:armhf. 451s Preparing to unpack .../63-libtbb12_2022.0.0-2_armhf.deb ... 451s Unpacking libtbb12:armhf (2022.0.0-2) ... 451s Selecting previously unselected package libtcl8.6:armhf. 451s Preparing to unpack .../64-libtcl8.6_8.6.16+dfsg-1_armhf.deb ... 451s Unpacking libtcl8.6:armhf (8.6.16+dfsg-1) ... 452s Selecting previously unselected package libtheoradec1:armhf. 452s Preparing to unpack .../65-libtheoradec1_1.2.0~alpha1+dfsg-5_armhf.deb ... 452s Unpacking libtheoradec1:armhf (1.2.0~alpha1+dfsg-5) ... 452s Selecting previously unselected package libtheoraenc1:armhf. 452s Preparing to unpack .../66-libtheoraenc1_1.2.0~alpha1+dfsg-5_armhf.deb ... 452s Unpacking libtheoraenc1:armhf (1.2.0~alpha1+dfsg-5) ... 452s Selecting previously unselected package libxft2:armhf. 452s Preparing to unpack .../67-libxft2_2.3.6-1build1_armhf.deb ... 452s Unpacking libxft2:armhf (2.3.6-1build1) ... 452s Selecting previously unselected package x11-common. 452s Preparing to unpack .../68-x11-common_1%3a7.7+23ubuntu3_all.deb ... 452s Unpacking x11-common (1:7.7+23ubuntu3) ... 452s Selecting previously unselected package libxss1:armhf. 452s Preparing to unpack .../69-libxss1_1%3a1.2.3-1build3_armhf.deb ... 452s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 452s Selecting previously unselected package libtk8.6:armhf. 452s Preparing to unpack .../70-libtk8.6_8.6.16-1_armhf.deb ... 452s Unpacking libtk8.6:armhf (8.6.16-1) ... 452s Selecting previously unselected package libvtk9.3:armhf. 452s Preparing to unpack .../71-libvtk9.3_9.3.0+dfsg1-4ubuntu1_armhf.deb ... 452s Unpacking libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 452s Selecting previously unselected package liblammps0t64:armhf. 452s Preparing to unpack .../72-liblammps0t64_20240207+dfsg-3build3_armhf.deb ... 452s Unpacking liblammps0t64:armhf (20240207+dfsg-3build3) ... 452s Selecting previously unselected package libslurm42t64. 452s Preparing to unpack .../73-libslurm42t64_24.11.1-1_armhf.deb ... 452s Unpacking libslurm42t64 (24.11.1-1) ... 452s Selecting previously unselected package hwloc-nox. 452s Preparing to unpack .../74-hwloc-nox_2.12.0-1_armhf.deb ... 452s Unpacking hwloc-nox (2.12.0-1) ... 452s Selecting previously unselected package mpich. 452s Preparing to unpack .../75-mpich_4.2.1-5_armhf.deb ... 452s Unpacking mpich (4.2.1-5) ... 452s Selecting previously unselected package mpi-default-bin. 452s Preparing to unpack .../76-mpi-default-bin_1.18_armhf.deb ... 452s Unpacking mpi-default-bin (1.18) ... 452s Selecting previously unselected package lammps. 452s Preparing to unpack .../77-lammps_20240207+dfsg-3build3_armhf.deb ... 452s Unpacking lammps (20240207+dfsg-3build3) ... 452s Setting up libpython3.13:armhf (3.13.2-2) ... 452s Setting up libxcb-dri3-0:armhf (1.17.0-2) ... 452s Setting up libtbbmalloc2:armhf (2022.0.0-2) ... 452s Setting up libpixman-1-0:armhf (0.44.0-3) ... 452s Setting up libllvm19:armhf (1:19.1.7-1ubuntu2) ... 452s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 452s Setting up libwayland-server0:armhf (1.23.1-3) ... 452s Setting up libx11-xcb1:armhf (2:1.8.10-2) ... 452s Setting up libdouble-conversion3:armhf (3.3.1-1) ... 452s Setting up libxcb-xfixes0:armhf (1.17.0-2) ... 452s Setting up libogg0:armhf (1.3.5-3build1) ... 452s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 452s Setting up proj-data (9.5.1-1) ... 452s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 452s Setting up lammps-data (20240207+dfsg-3build3) ... 452s Setting up libxcb-render0:armhf (1.17.0-2) ... 452s Setting up libglvnd0:armhf (1.7.0-1build1) ... 452s Setting up libxcb-glx0:armhf (1.17.0-2) ... 452s Setting up x11-common (1:7.7+23ubuntu3) ... 453s Setting up libdeflate0:armhf (1.23-1) ... 453s Setting up libxcb-shm0:armhf (1.17.0-2) ... 453s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 453s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 453s Setting up libaec0:armhf (1.1.3-1) ... 453s Setting up libopengl0:armhf (1.7.0-1build1) ... 453s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ... 453s Setting up libxcb-present0:armhf (1.17.0-2) ... 453s Setting up libblas3:armhf (3.12.1-2) ... 453s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 453s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 453s Setting up libxcb-sync1:armhf (1.17.0-2) ... 453s Setting up libjsoncpp26:armhf (1.9.6-3) ... 453s Setting up libslurm42t64 (24.11.1-1) ... 453s Setting up fonts-dejavu-mono (2.37-8) ... 453s Setting up libhwloc15:armhf (2.12.0-1) ... 453s Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... 453s Setting up fonts-dejavu-core (2.37-8) ... 453s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 453s Setting up libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 453s Setting up libgfortran5:armhf (15-20250222-0ubuntu1) ... 453s Setting up libvulkan1:armhf (1.4.304.0-1) ... 453s Setting up libwebp7:armhf (1.5.0-0.1) ... 453s Setting up libmpich12:armhf (4.2.1-5) ... 453s Setting up libxshmfence1:armhf (1.3-1build5) ... 453s Setting up libxcb-randr0:armhf (1.17.0-2) ... 453s Setting up libxss1:armhf (1:1.2.3-1build3) ... 453s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 453s Setting up libsz2:armhf (1.1.3-1) ... 453s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 453s Setting up mesa-libgallium:armhf (25.0.1-2ubuntu1) ... 453s Setting up liblapack3:armhf (3.12.1-2) ... 453s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 453s Setting up libgbm1:armhf (25.0.1-2ubuntu1) ... 453s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 453s Setting up libgl1-mesa-dri:armhf (25.0.1-2ubuntu1) ... 453s Setting up hwloc-nox (2.12.0-1) ... 453s Setting up libkim-api2:armhf (2.3.0-1ubuntu1) ... 453s Setting up libtbbbind-2-5:armhf (2022.0.0-2) ... 453s Setting up libhdf5-310:armhf (1.14.5+repack-3) ... 453s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 453s Setting up libfontconfig1:armhf (2.15.0-2ubuntu1) ... 453s Setting up libhdf5-hl-310:armhf (1.14.5+repack-3) ... 453s Setting up libxft2:armhf (2.3.6-1build1) ... 453s Setting up libglx-mesa0:armhf (25.0.1-2ubuntu1) ... 453s Setting up libglx0:armhf (1.7.0-1build1) ... 453s Setting up libproj25:armhf (9.5.1-1) ... 453s Setting up mpich (4.2.1-5) ... 453s update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode 453s update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode 453s Setting up libtk8.6:armhf (8.6.16-1) ... 453s Setting up libnetcdf22:armhf (1:4.9.3-1) ... 453s Setting up mpi-default-bin (1.18) ... 453s Setting up libtbb12:armhf (2022.0.0-2) ... 453s Setting up libcairo2:armhf (1.18.2-2) ... 453s Setting up libgl1:armhf (1.7.0-1build1) ... 453s Setting up libtheoradec1:armhf (1.2.0~alpha1+dfsg-5) ... 453s Setting up libglew2.2:armhf (2.2.0-4build1) ... 453s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 453s Setting up libtheoraenc1:armhf (1.2.0~alpha1+dfsg-5) ... 453s Setting up libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 453s Setting up liblammps0t64:armhf (20240207+dfsg-3build3) ... 453s Setting up lammps (20240207+dfsg-3build3) ... 453s Processing triggers for man-db (2.13.0-1) ... 454s Processing triggers for libc-bin (2.41-1ubuntu1) ... 463s autopkgtest [01:25:39]: test crack: [----------------------- 466s LAMMPS (7 Feb 2024 - Update 1) 466s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 466s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 466s using 1 OpenMP thread(s) per MPI task 466s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 466s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 466s 2 by 1 by 1 MPI processor grid 466s Created 8141 atoms 466s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 466s create_atoms CPU = 0.001 seconds 466s 302 atoms in group lower 466s 302 atoms in group upper 466s 604 atoms in group boundary 466s 7537 atoms in group mobile 466s 841 atoms in group leftupper 466s 841 atoms in group leftlower 466s Setting atom values ... 466s 841 settings made for type 466s Setting atom values ... 466s 841 settings made for type 466s Setting atom values ... 466s 302 settings made for type 466s Setting atom values ... 466s 302 settings made for type 466s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 466s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 466s Neighbor list info ... 466s update: every = 1 steps, delay = 5 steps, check = yes 466s max neighbors/atom: 2000, page size: 100000 466s master list distance cutoff = 2.8 466s ghost atom cutoff = 2.8 466s binsize = 1.4, bins = 80 56 1 466s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 466s (1) pair lj/cut, perpetual 466s attributes: half, newton on 466s pair build: half/bin/atomonly/newton 466s stencil: half/bin/2d 466s bin: standard 466s Setting up Verlet run ... 466s Unit style : lj 466s Current step : 0 466s Time step : 0.003 466s Per MPI rank memory allocation (min/avg/max) = 2.784 | 2.784 | 2.784 Mbytes 466s Step Temp E_pair E_mol TotEng Press Volume 466s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 466s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 466s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 466s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 466s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 466s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 466s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 466s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 467s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 467s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 467s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 467s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 467s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 467s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 467s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 467s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 468s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 468s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 468s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 468s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 468s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 468s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 468s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 469s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 469s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 469s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 469s Loop time of 3.20257 on 2 procs for 5000 steps with 8141 atoms 469s 469s Performance: 404675.390 tau/day, 1561.248 timesteps/s, 12.710 Matom-step/s 469s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 469s 469s MPI task timing breakdown: 469s Section | min time | avg time | max time |%varavg| %total 469s --------------------------------------------------------------- 469s Pair | 2.5941 | 2.604 | 2.6138 | 0.6 | 81.31 469s Neigh | 0.12267 | 0.12613 | 0.12958 | 1.0 | 3.94 469s Comm | 0.11544 | 0.11667 | 0.1179 | 0.4 | 3.64 469s Output | 0.0012184 | 0.0017661 | 0.0023137 | 1.3 | 0.06 469s Modify | 0.23462 | 0.23504 | 0.23546 | 0.1 | 7.34 469s Other | | 0.119 | | | 3.72 469s 469s Nlocal: 4070.5 ave 4085 max 4056 min 469s Histogram: 1 0 0 0 0 0 0 0 0 1 469s Nghost: 207 ave 208 max 206 min 469s Histogram: 1 0 0 0 0 0 0 0 0 1 469s Neighs: 35700 ave 35927 max 35473 min 469s Histogram: 1 0 0 0 0 0 0 0 0 1 469s 469s Total # of neighbors = 71400 469s Ave neighs/atom = 8.7704213 469s Neighbor list builds = 106 469s Dangerous builds = 0 469s Total wall time: 0:00:03 469s LAMMPS (7 Feb 2024 - Update 1) 469s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 469s using 1 OpenMP thread(s) per MPI task 469s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 469s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 469s 1 by 1 by 1 MPI processor grid 469s Created 8141 atoms 469s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 469s create_atoms CPU = 0.002 seconds 469s 302 atoms in group lower 469s 302 atoms in group upper 469s 604 atoms in group boundary 469s 7537 atoms in group mobile 469s 841 atoms in group leftupper 469s 841 atoms in group leftlower 469s Setting atom values ... 469s 841 settings made for type 469s Setting atom values ... 469s 841 settings made for type 469s Setting atom values ... 469s 302 settings made for type 469s Setting atom values ... 469s 302 settings made for type 469s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 469s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 469s Neighbor list info ... 469s update: every = 1 steps, delay = 5 steps, check = yes 469s max neighbors/atom: 2000, page size: 100000 469s master list distance cutoff = 2.8 469s ghost atom cutoff = 2.8 469s binsize = 1.4, bins = 80 56 1 469s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 469s (1) pair lj/cut, perpetual 469s attributes: half, newton on 469s pair build: half/bin/atomonly/newton 469s stencil: half/bin/2d 469s bin: standard 469s Setting up Verlet run ... 469s Unit style : lj 469s Current step : 0 469s Time step : 0.003 469s Per MPI rank memory allocation (min/avg/max) = 2.8 | 2.8 | 2.8 Mbytes 469s Step Temp E_pair E_mol TotEng Press Volume 469s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 469s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 469s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 470s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 470s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 470s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 470s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 471s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 471s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 471s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 471s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 472s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 472s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 472s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 472s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 473s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 473s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 473s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 473s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 474s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 474s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 474s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 474s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 475s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 475s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 475s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 475s Loop time of 6.15719 on 1 procs for 5000 steps with 8141 atoms 475s 475s Performance: 210485.742 tau/day, 812.059 timesteps/s, 6.611 Matom-step/s 475s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 475s 475s MPI task timing breakdown: 475s Section | min time | avg time | max time |%varavg| %total 475s --------------------------------------------------------------- 475s Pair | 5.2413 | 5.2413 | 5.2413 | 0.0 | 85.13 475s Neigh | 0.23329 | 0.23329 | 0.23329 | 0.0 | 3.79 475s Comm | 0.020079 | 0.020079 | 0.020079 | 0.0 | 0.33 475s Output | 0.0028198 | 0.0028198 | 0.0028198 | 0.0 | 0.05 475s Modify | 0.47271 | 0.47271 | 0.47271 | 0.0 | 7.68 475s Other | | 0.1869 | | | 3.04 475s 475s Nlocal: 8141 ave 8141 max 8141 min 475s Histogram: 1 0 0 0 0 0 0 0 0 0 475s Nghost: 0 ave 0 max 0 min 475s Histogram: 1 0 0 0 0 0 0 0 0 0 475s Neighs: 71389 ave 71389 max 71389 min 475s Histogram: 1 0 0 0 0 0 0 0 0 0 475s 475s Total # of neighbors = 71389 475s Ave neighs/atom = 8.7690701 475s Neighbor list builds = 100 475s Dangerous builds = 0 475s Total wall time: 0:00:06 475s run: OK 475s autopkgtest [01:25:51]: test crack: -----------------------] 480s crack PASS 480s autopkgtest [01:25:56]: test crack: - - - - - - - - - - results - - - - - - - - - - 485s autopkgtest [01:26:01]: test dipole: preparing testbed 487s Reading package lists... 487s Building dependency tree... 487s Reading state information... 488s Starting pkgProblemResolver with broken count: 0 488s Starting 2 pkgProblemResolver with broken count: 0 488s Done 489s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 497s autopkgtest [01:26:13]: test dipole: [----------------------- 500s LAMMPS (7 Feb 2024 - Update 1) 500s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 500s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 500s using 1 OpenMP thread(s) per MPI task 500s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 500s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 500s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 500s 2 by 1 by 1 MPI processor grid 500s Created 200 atoms 500s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 500s create_atoms CPU = 0.000 seconds 500s Setting atom values ... 500s 200 settings made for mass 500s Setting atom values ... 500s 200 settings made for dipole/random 500s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 500s Neighbor list info ... 500s update: every = 1 steps, delay = 0 steps, check = yes 500s max neighbors/atom: 2000, page size: 100000 500s master list distance cutoff = 2.8 500s ghost atom cutoff = 2.8 500s binsize = 1.4, bins = 13 13 2 500s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 500s (1) pair lj/cut/dipole/cut, perpetual 500s attributes: half, newton on 500s pair build: half/bin/atomonly/newton 500s stencil: half/bin/2d 500s bin: standard 500s Setting up Verlet run ... 500s Unit style : lj 500s Current step : 0 500s Time step : 0.005 500s Per MPI rank memory allocation (min/avg/max) = 4.549 | 4.549 | 4.549 Mbytes 500s Step Temp E_pair c_erot TotEng Press 500s 0 0 -2.0965715 0 -2.0965715 -2.4759659 500s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 500s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 500s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856087 500s 2000 0.44906427 -2.8037479 0.24422576 -2.356929 0.15010432 500s 2500 0.46058471 -2.8143585 0.25012657 -2.3560767 -0.38282545 500s 3000 0.47344306 -2.8070454 0.22839921 -2.3359696 0.0086809905 500s 3500 0.40527008 -2.7047531 0.20199859 -2.3015094 0.28576366 500s 4000 0.45532509 -2.7724376 0.22443356 -2.3193892 -0.026546855 500s 4500 0.43501879 -2.7267497 0.20510275 -2.293906 -0.063127027 500s 5000 0.42443514 -2.745851 0.24060818 -2.3235381 -0.025742709 500s 5500 0.3839334 -2.7073937 0.24270814 -2.32538 -0.07170774 500s 6000 0.42922278 -2.7478329 0.25153908 -2.3207562 -0.47398846 500s 6500 0.45362461 -2.7967795 0.2756071 -2.345423 0.064335127 500s 7000 0.426427 -2.7100719 0.21223279 -2.2857771 0.23817765 500s 7500 0.44329907 -2.7592192 0.25431233 -2.3181366 -0.48160925 500s 8000 0.45710982 -2.746352 0.23112717 -2.2915277 0.067805988 500s 8500 0.45706146 -2.7008059 0.20546196 -2.2460298 -0.11582213 500s 9000 0.46491089 -2.7354016 0.23514028 -2.2728153 -0.25398947 500s 9500 0.44183004 -2.6848933 0.22534954 -2.2452724 -0.047314023 500s 10000 0.42741048 -2.7131911 0.27211413 -2.2879177 0.12679961 500s Loop time of 0.58851 on 2 procs for 10000 steps with 200 atoms 500s 500s Performance: 7340570.755 tau/day, 16992.062 timesteps/s, 3.398 Matom-step/s 500s 96.6% CPU use with 2 MPI tasks x 1 OpenMP threads 500s 500s MPI task timing breakdown: 500s Section | min time | avg time | max time |%varavg| %total 500s --------------------------------------------------------------- 500s Pair | 0.33361 | 0.36438 | 0.39514 | 5.1 | 61.91 500s Neigh | 0.01621 | 0.017302 | 0.018394 | 0.8 | 2.94 500s Comm | 0.10551 | 0.13699 | 0.16846 | 8.5 | 23.28 500s Output | 0.00056356 | 0.00082973 | 0.0010959 | 0.0 | 0.14 500s Modify | 0.032546 | 0.034013 | 0.03548 | 0.8 | 5.78 500s Other | | 0.035 | | | 5.95 500s 500s Nlocal: 100 ave 106 max 94 min 500s Histogram: 1 0 0 0 0 0 0 0 0 1 500s Nghost: 118.5 ave 120 max 117 min 500s Histogram: 1 0 0 0 0 0 0 0 0 1 500s Neighs: 827.5 ave 911 max 744 min 500s Histogram: 1 0 0 0 0 0 0 0 0 1 500s 500s Total # of neighbors = 1655 500s Ave neighs/atom = 8.275 500s Neighbor list builds = 692 500s Dangerous builds = 0 500s Total wall time: 0:00:00 500s LAMMPS (7 Feb 2024 - Update 1) 500s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 500s using 1 OpenMP thread(s) per MPI task 500s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 500s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 500s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 500s 1 by 1 by 1 MPI processor grid 500s Created 200 atoms 500s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 500s create_atoms CPU = 0.000 seconds 500s Setting atom values ... 500s 200 settings made for mass 500s Setting atom values ... 500s 200 settings made for dipole/random 500s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 500s Neighbor list info ... 500s update: every = 1 steps, delay = 0 steps, check = yes 500s max neighbors/atom: 2000, page size: 100000 500s master list distance cutoff = 2.8 500s ghost atom cutoff = 2.8 500s binsize = 1.4, bins = 13 13 2 500s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 500s (1) pair lj/cut/dipole/cut, perpetual 500s attributes: half, newton on 500s pair build: half/bin/atomonly/newton 500s stencil: half/bin/2d 500s bin: standard 500s Setting up Verlet run ... 500s Unit style : lj 500s Current step : 0 500s Time step : 0.005 500s Per MPI rank memory allocation (min/avg/max) = 4.55 | 4.55 | 4.55 Mbytes 500s Step Temp E_pair c_erot TotEng Press 500s 0 0 -2.0965715 0 -2.0965715 -2.4759659 500s 500 0.37155664 -2.7150631 0.22689419 -2.3453642 -0.33510922 501s 1000 0.42354552 -2.749888 0.21162528 -2.3284602 -0.11120147 501s 1500 0.39778312 -2.7597475 0.24737266 -2.3639533 -0.33856086 501s 2000 0.44906527 -2.8037488 0.24422567 -2.3569289 0.15010101 501s 2500 0.46052127 -2.8142136 0.25010172 -2.355995 -0.38222495 501s 3000 0.48349143 -2.8019094 0.21892648 -2.3208354 -0.021940474 501s 3500 0.42818128 -2.7407155 0.22510159 -2.3146751 -0.01916692 501s 4000 0.43447865 -2.7251092 0.21179003 -2.292803 -0.054070562 501s 4500 0.49679675 -2.7760513 0.19789317 -2.2817386 -0.01374163 501s 5000 0.45369814 -2.7436186 0.22108827 -2.2921889 0.032452862 501s 5500 0.49381571 -2.8052843 0.24840557 -2.3139377 -0.011483656 501s 6000 0.47486262 -2.762914 0.230038 -2.2904257 0.35084172 501s 6500 0.47834729 -2.7628296 0.23242786 -2.286874 -0.084199114 501s 7000 0.4554671 -2.7485479 0.25152556 -2.2953581 -0.41657484 501s 7500 0.48688446 -2.7468396 0.22672266 -2.2623895 0.19798746 501s 8000 0.42093195 -2.6889197 0.24972685 -2.2700924 -0.048022487 501s 8500 0.44505913 -2.65779 0.18787506 -2.2149561 0.23409841 501s 9000 0.48102255 -2.7186808 0.22041232 -2.2400634 0.26761374 501s 9500 0.41955498 -2.688272 0.26237731 -2.2708148 0.1556688 501s 10000 0.47397757 -2.683164 0.2078595 -2.2115563 -0.21881739 501s Loop time of 0.903338 on 1 procs for 10000 steps with 200 atoms 501s 501s Performance: 4782261.106 tau/day, 11070.049 timesteps/s, 2.214 Matom-step/s 501s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 501s 501s MPI task timing breakdown: 501s Section | min time | avg time | max time |%varavg| %total 501s --------------------------------------------------------------- 501s Pair | 0.73235 | 0.73235 | 0.73235 | 0.0 | 81.07 501s Neigh | 0.034211 | 0.034211 | 0.034211 | 0.0 | 3.79 501s Comm | 0.047452 | 0.047452 | 0.047452 | 0.0 | 5.25 501s Output | 0.0010178 | 0.0010178 | 0.0010178 | 0.0 | 0.11 501s Modify | 0.059402 | 0.059402 | 0.059402 | 0.0 | 6.58 501s Other | | 0.0289 | | | 3.20 501s 501s Nlocal: 200 ave 200 max 200 min 501s Histogram: 1 0 0 0 0 0 0 0 0 0 501s Nghost: 166 ave 166 max 166 min 501s Histogram: 1 0 0 0 0 0 0 0 0 0 501s Neighs: 1624 ave 1624 max 1624 min 501s Histogram: 1 0 0 0 0 0 0 0 0 0 501s 501s Total # of neighbors = 1624 501s Ave neighs/atom = 8.12 501s Neighbor list builds = 703 501s Dangerous builds = 0 501s Total wall time: 0:00:00 501s run: OK 502s autopkgtest [01:26:18]: test dipole: -----------------------] 506s autopkgtest [01:26:22]: test dipole: - - - - - - - - - - results - - - - - - - - - - 506s dipole PASS 510s autopkgtest [01:26:26]: test ellipse: preparing testbed 513s Reading package lists... 513s Building dependency tree... 513s Reading state information... 513s Starting pkgProblemResolver with broken count: 0 513s Starting 2 pkgProblemResolver with broken count: 0 513s Done 514s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 522s autopkgtest [01:26:38]: test ellipse: [----------------------- 524s LAMMPS (7 Feb 2024 - Update 1) 524s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 524s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 524s using 1 OpenMP thread(s) per MPI task 524s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 524s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 524s 2 by 1 by 1 MPI processor grid 524s Created 400 atoms 524s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 524s create_atoms CPU = 0.000 seconds 524s Setting atom values ... 524s 29 settings made for type/fraction 524s Setting atom values ... 524s 371 settings made for mass 524s Setting atom values ... 524s 29 settings made for mass 524s Setting atom values ... 524s 371 settings made for shape 524s Setting atom values ... 524s 29 settings made for shape 524s Setting atom values ... 524s 400 settings made for quat/random 524s 371 atoms in group spheroid 524s 524s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 524s 524s Your simulation uses code contributions which should be cited: 524s - pair gayberne command: doi:10.1063/1.3058435 524s The log file lists these citations in BibTeX format. 524s 524s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 524s 524s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 524s Neighbor list info ... 524s update: every = 1 steps, delay = 0 steps, check = yes 524s max neighbors/atom: 2000, page size: 100000 524s master list distance cutoff = 4.8 524s ghost atom cutoff = 4.8 524s binsize = 2.4, bins = 59 59 3 524s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 524s (1) pair gayberne, perpetual 524s attributes: half, newton on 524s pair build: half/bin/atomonly/newton 524s stencil: half/bin/2d 524s bin: standard 524s Setting up Verlet run ... 524s Unit style : lj 524s Current step : 0 524s Time step : 0.002 524s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 524s Step c_rot E_pair TotEng Press Volume 524s 0 2.3158404 0 2.394 0.04788 20000 524s 100 1.7101139 0 1.7678302 0.034413192 20548.286 524s 200 2.3115592 0 2.3895743 0.04649702 20556.796 524s 300 1.831333 0 1.8931405 0.041256922 18354.646 524s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 524s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 524s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 524s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 524s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 524s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 524s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 524s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 524s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 524s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 524s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 524s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 524s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 524s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 524s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 525s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 525s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 525s Loop time of 0.408705 on 2 procs for 2000 steps with 400 atoms 525s 525s Performance: 845597.157 tau/day, 4893.502 timesteps/s, 1.957 Matom-step/s 525s 97.6% CPU use with 2 MPI tasks x 1 OpenMP threads 525s 525s MPI task timing breakdown: 525s Section | min time | avg time | max time |%varavg| %total 525s --------------------------------------------------------------- 525s Pair | 0.19802 | 0.22251 | 0.247 | 5.2 | 54.44 525s Neigh | 0.010965 | 0.011074 | 0.011183 | 0.1 | 2.71 525s Comm | 0.029355 | 0.05349 | 0.077625 | 10.4 | 13.09 525s Output | 0.013683 | 0.013985 | 0.014287 | 0.3 | 3.42 525s Modify | 0.094505 | 0.095048 | 0.095591 | 0.2 | 23.26 525s Other | | 0.0126 | | | 3.08 525s 525s Nlocal: 200 ave 211 max 189 min 525s Histogram: 1 0 0 0 0 0 0 0 0 1 525s Nghost: 215 ave 217 max 213 min 525s Histogram: 1 0 0 0 0 0 0 0 0 1 525s Neighs: 1561 ave 1651 max 1471 min 525s Histogram: 1 0 0 0 0 0 0 0 0 1 525s 525s Total # of neighbors = 3122 525s Ave neighs/atom = 7.805 525s Neighbor list builds = 346 525s Dangerous builds = 0 525s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 525s Setting up Verlet run ... 525s Unit style : lj 525s Current step : 2000 525s Time step : 0.002 525s Per MPI rank memory allocation (min/avg/max) = 6.461 | 6.461 | 6.461 Mbytes 525s Step c_rot E_pair TotEng Press Volume 525s 2000 1.952518 -3.6531717 -1.7078818 0.50248125 989.96894 525s 2100 1.9040485 -3.6005672 -1.6802923 0.39862443 989.96894 525s 2200 1.8951971 -3.5921565 -1.6947175 1.0260215 989.96894 525s 2300 2.0029243 -3.7081933 -1.6838652 0.66970186 989.96894 525s 2400 2.027189 -3.7314224 -1.7100024 0.89700378 989.96894 525s 2500 2.0661215 -3.7753463 -1.702413 0.57671879 989.96894 525s 2600 2.0610733 -3.7707904 -1.7111988 0.90914683 989.96894 525s 2700 2.0505106 -3.7599067 -1.7337499 0.65660966 989.96894 525s 2800 2.1106444 -3.8219338 -1.7370714 0.55276913 989.96894 525s 2900 2.0347978 -3.7428385 -1.7135242 0.69752989 989.96894 525s 3000 2.0331089 -3.7397511 -1.7515341 0.052123917 989.96894 525s 3100 1.9983479 -3.7074978 -1.7158075 0.7551458 989.96894 525s 3200 2.1299896 -3.8449355 -1.7171591 1.055861 989.96894 525s 3300 2.079427 -3.7934717 -1.684941 1.1625179 989.96894 525s 3400 2.1499496 -3.8651326 -1.703348 0.58109397 989.96894 525s 3500 2.0901278 -3.8054829 -1.699465 1.0231781 989.96894 525s 3600 2.1041735 -3.8168043 -1.6893938 1.0813513 989.96894 525s 3700 2.0650932 -3.7777761 -1.7224926 1.3120953 989.96894 525s 3800 2.0166275 -3.7282861 -1.7416258 0.78824642 989.96894 525s 3900 2.0726099 -3.7842546 -1.7339991 0.92130013 989.96894 525s 4000 2.1298275 -3.8450909 -1.7237177 0.95785441 989.96894 525s Loop time of 0.40075 on 2 procs for 2000 steps with 400 atoms 525s 525s Performance: 862382.048 tau/day, 4990.637 timesteps/s, 1.996 Matom-step/s 525s 98.7% CPU use with 2 MPI tasks x 1 OpenMP threads 525s 525s MPI task timing breakdown: 525s Section | min time | avg time | max time |%varavg| %total 525s --------------------------------------------------------------- 525s Pair | 0.28746 | 0.28752 | 0.28759 | 0.0 | 71.75 525s Neigh | 0.0028169 | 0.0032007 | 0.0035845 | 0.7 | 0.80 525s Comm | 0.037729 | 0.037928 | 0.038127 | 0.1 | 9.46 525s Output | 0.014013 | 0.014276 | 0.014539 | 0.2 | 3.56 525s Modify | 0.039987 | 0.044207 | 0.048427 | 2.0 | 11.03 525s Other | | 0.01361 | | | 3.40 525s 525s Nlocal: 200 ave 228 max 172 min 525s Histogram: 1 0 0 0 0 0 0 0 0 1 525s Nghost: 209 ave 215 max 203 min 525s Histogram: 1 0 0 0 0 0 0 0 0 1 525s Neighs: 1639.5 ave 1963 max 1316 min 525s Histogram: 1 0 0 0 0 0 0 0 0 1 525s 525s Total # of neighbors = 3279 525s Ave neighs/atom = 8.1975 525s Neighbor list builds = 50 525s Dangerous builds = 0 525s Total wall time: 0:00:00 525s LAMMPS (7 Feb 2024 - Update 1) 525s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 525s using 1 OpenMP thread(s) per MPI task 525s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 525s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 525s 1 by 1 by 1 MPI processor grid 525s Created 400 atoms 525s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 525s create_atoms CPU = 0.000 seconds 525s Setting atom values ... 525s 29 settings made for type/fraction 525s Setting atom values ... 525s 371 settings made for mass 525s Setting atom values ... 525s 29 settings made for mass 525s Setting atom values ... 525s 371 settings made for shape 525s Setting atom values ... 525s 29 settings made for shape 525s Setting atom values ... 525s 400 settings made for quat/random 525s 371 atoms in group spheroid 525s 525s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 525s 525s Your simulation uses code contributions which should be cited: 525s - pair gayberne command: doi:10.1063/1.3058435 525s The log file lists these citations in BibTeX format. 525s 525s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 525s 525s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 525s Neighbor list info ... 525s update: every = 1 steps, delay = 0 steps, check = yes 525s max neighbors/atom: 2000, page size: 100000 525s master list distance cutoff = 4.8 525s ghost atom cutoff = 4.8 525s binsize = 2.4, bins = 59 59 3 525s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 525s (1) pair gayberne, perpetual 525s attributes: half, newton on 525s pair build: half/bin/atomonly/newton 525s stencil: half/bin/2d 525s bin: standard 525s Setting up Verlet run ... 525s Unit style : lj 525s Current step : 0 525s Time step : 0.002 525s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 525s Step c_rot E_pair TotEng Press Volume 525s 0 2.3158404 0 2.394 0.04788 20000 525s 100 1.7101139 0 1.7678302 0.034413192 20548.286 525s 200 2.3115592 0 2.3895743 0.04649702 20556.796 525s 300 1.831333 0 1.8931405 0.041256922 18354.646 525s 400 2.1838099 -0.00017499954 2.2573384 0.066506278 13574.023 525s 500 1.9604824 -0.024753591 2.0018228 0.09726581 8392.5882 525s 600 1.983652 -0.13957983 1.858954 0.28044314 4590.4733 525s 700 2.0349282 -0.7537042 1.2545559 0.45904399 2452.437 525s 800 2.1883376 -1.7033514 0.37402366 1.4284826 1377.0458 525s 900 1.8893439 -3.2012297 -1.3190748 3.1235376 889.49388 525s 1000 1.5818588 -4.6980931 -3.1320854 3.6494701 700.71079 525s 1100 1.743968 -5.3117051 -3.573368 1.7907876 666.1204 525s 1200 2.1788951 -5.0690852 -2.8893841 1.0317884 697.08645 525s 1300 2.0067166 -4.6588703 -2.6387448 -0.19855863 763.72651 525s 1400 2.1020191 -4.2786372 -2.1756186 0.5410189 815.37712 525s 1500 1.805494 -4.1713612 -2.3732785 0.88817983 855.41486 526s 1600 2.1414975 -3.9792878 -1.8690882 0.79530678 899.00645 526s 1700 1.9971755 -3.8166601 -1.8380659 0.41343091 945.60821 526s 1800 2.0033499 -3.7524192 -1.7481879 0.76104973 973.71402 526s 1900 2.0083456 -3.7603247 -1.7442111 0.74095064 988.03964 526s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 526s Loop time of 0.662811 on 1 procs for 2000 steps with 400 atoms 526s 526s Performance: 521415.314 tau/day, 3017.450 timesteps/s, 1.207 Matom-step/s 526s 98.9% CPU use with 1 MPI tasks x 1 OpenMP threads 526s 526s MPI task timing breakdown: 526s Section | min time | avg time | max time |%varavg| %total 526s --------------------------------------------------------------- 526s Pair | 0.4443 | 0.4443 | 0.4443 | 0.0 | 67.03 526s Neigh | 0.021813 | 0.021813 | 0.021813 | 0.0 | 3.29 526s Comm | 0.014031 | 0.014031 | 0.014031 | 0.0 | 2.12 526s Output | 0.022982 | 0.022982 | 0.022982 | 0.0 | 3.47 526s Modify | 0.14944 | 0.14944 | 0.14944 | 0.0 | 22.55 526s Other | | 0.01024 | | | 1.55 526s 526s Nlocal: 400 ave 400 max 400 min 526s Histogram: 1 0 0 0 0 0 0 0 0 0 526s Nghost: 276 ave 276 max 276 min 526s Histogram: 1 0 0 0 0 0 0 0 0 0 526s Neighs: 3122 ave 3122 max 3122 min 526s Histogram: 1 0 0 0 0 0 0 0 0 0 526s 526s Total # of neighbors = 3122 526s Ave neighs/atom = 7.805 526s Neighbor list builds = 346 526s Dangerous builds = 0 526s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 526s Setting up Verlet run ... 526s Unit style : lj 526s Current step : 2000 526s Time step : 0.002 526s Per MPI rank memory allocation (min/avg/max) = 6.488 | 6.488 | 6.488 Mbytes 526s Step c_rot E_pair TotEng Press Volume 526s 2000 1.952518 -3.6531717 -1.7078818 0.50248126 989.96894 526s 2100 1.9040485 -3.6005672 -1.6802923 0.39862445 989.96894 526s 2200 1.895197 -3.5921565 -1.6947175 1.0260215 989.96894 526s 2300 2.0029243 -3.7081933 -1.6838652 0.66970181 989.96894 526s 2400 2.027189 -3.7314224 -1.7100024 0.89700379 989.96894 526s 2500 2.0661215 -3.7753462 -1.702413 0.57671817 989.96894 526s 2600 2.0610736 -3.7707907 -1.7111987 0.90914701 989.96894 526s 2700 2.0505116 -3.7599078 -1.7337505 0.65660586 989.96894 526s 2800 2.1106432 -3.8219326 -1.7370705 0.55276071 989.96894 526s 2900 2.0347944 -3.7428349 -1.7135244 0.69753379 989.96894 526s 3000 2.033092 -3.739734 -1.7515318 0.05219688 989.96894 526s 3100 1.9983562 -3.707508 -1.7158135 0.75509883 989.96894 526s 3200 2.1298063 -3.8447512 -1.7171502 1.0568228 989.96894 526s 3300 2.0791428 -3.7931834 -1.6847086 1.1627829 989.96894 526s 3400 2.1498359 -3.8650337 -1.7032074 0.58032554 989.96894 526s 3500 2.0904809 -3.805739 -1.6981978 1.0208226 989.96894 526s 3600 2.1048714 -3.8174009 -1.691117 1.0550021 989.96894 526s 3700 2.0745341 -3.7874614 -1.7155849 1.3035756 989.96894 526s 3800 2.0439729 -3.7569157 -1.7364298 0.76483567 989.96894 526s 3900 2.0498921 -3.7613373 -1.7218798 1.0164212 989.96894 526s 4000 2.0584264 -3.7719072 -1.7005071 0.89500692 989.96894 526s Loop time of 0.714383 on 1 procs for 2000 steps with 400 atoms 526s 526s Performance: 483773.928 tau/day, 2799.618 timesteps/s, 1.120 Matom-step/s 526s 98.9% CPU use with 1 MPI tasks x 1 OpenMP threads 526s 526s MPI task timing breakdown: 526s Section | min time | avg time | max time |%varavg| %total 526s --------------------------------------------------------------- 526s Pair | 0.57499 | 0.57499 | 0.57499 | 0.0 | 80.49 526s Neigh | 0.0063323 | 0.0063323 | 0.0063323 | 0.0 | 0.89 526s Comm | 0.013966 | 0.013966 | 0.013966 | 0.0 | 1.95 526s Output | 0.023069 | 0.023069 | 0.023069 | 0.0 | 3.23 526s Modify | 0.086724 | 0.086724 | 0.086724 | 0.0 | 12.14 526s Other | | 0.009298 | | | 1.30 526s 526s Nlocal: 400 ave 400 max 400 min 526s Histogram: 1 0 0 0 0 0 0 0 0 0 526s Nghost: 284 ave 284 max 284 min 526s Histogram: 1 0 0 0 0 0 0 0 0 0 526s Neighs: 3286 ave 3286 max 3286 min 526s Histogram: 1 0 0 0 0 0 0 0 0 0 526s 526s Total # of neighbors = 3286 526s Ave neighs/atom = 8.215 526s Neighbor list builds = 50 526s Dangerous builds = 0 526s Total wall time: 0:00:01 526s LAMMPS (7 Feb 2024 - Update 1) 526s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 526s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 526s using 1 OpenMP thread(s) per MPI task 526s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 526s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 526s 2 by 1 by 1 MPI processor grid 526s Created 400 atoms 526s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 526s create_atoms CPU = 0.000 seconds 526s Setting atom values ... 526s 29 settings made for type/fraction 526s Setting atom values ... 526s 371 settings made for mass 526s Setting atom values ... 526s 29 settings made for mass 526s Setting atom values ... 526s 371 settings made for shape 526s Setting atom values ... 526s 29 settings made for shape 526s Setting atom values ... 526s 400 settings made for quat/random 526s 371 atoms in group spheroid 526s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 526s Neighbor list info ... 526s update: every = 1 steps, delay = 0 steps, check = yes 526s max neighbors/atom: 2000, page size: 100000 526s master list distance cutoff = 4.8 526s ghost atom cutoff = 4.8 526s binsize = 2.4, bins = 59 59 3 526s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 526s (1) pair resquared, perpetual 526s attributes: half, newton on 526s pair build: half/bin/atomonly/newton 526s stencil: half/bin/2d 526s bin: standard 526s Setting up Verlet run ... 526s Unit style : lj 526s Current step : 0 526s Time step : 0.002 526s Per MPI rank memory allocation (min/avg/max) = 4.306 | 4.306 | 4.306 Mbytes 526s Step c_rot E_pair TotEng Press Volume 526s 0 2.3158404 0 2.394 0.04788 20000 526s 100 1.7101139 0 1.7678302 0.034413192 20548.286 526s 200 2.3115592 0 2.3895743 0.04649702 20556.796 527s 300 1.831333 0 1.8931405 0.041256922 18354.646 527s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 527s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 527s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 527s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 527s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 527s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 527s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 527s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 527s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 527s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 527s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 527s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 527s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 527s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 527s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 527s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 527s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 527s Loop time of 0.65327 on 2 procs for 2000 steps with 400 atoms 527s 527s Performance: 529030.571 tau/day, 3061.520 timesteps/s, 1.225 Matom-step/s 527s 98.2% CPU use with 2 MPI tasks x 1 OpenMP threads 527s 527s MPI task timing breakdown: 527s Section | min time | avg time | max time |%varavg| %total 527s --------------------------------------------------------------- 527s Pair | 0.46877 | 0.47105 | 0.47334 | 0.3 | 72.11 527s Neigh | 0.011462 | 0.011873 | 0.012285 | 0.4 | 1.82 527s Comm | 0.04174 | 0.0435 | 0.045259 | 0.8 | 6.66 527s Output | 0.013927 | 0.014282 | 0.014637 | 0.3 | 2.19 527s Modify | 0.096906 | 0.098432 | 0.099958 | 0.5 | 15.07 527s Other | | 0.01413 | | | 2.16 527s 527s Nlocal: 200 ave 210 max 190 min 527s Histogram: 1 0 0 0 0 0 0 0 0 1 527s Nghost: 164 ave 168 max 160 min 527s Histogram: 1 0 0 0 0 0 0 0 0 1 527s Neighs: 910 ave 958 max 862 min 527s Histogram: 1 0 0 0 0 0 0 0 0 1 527s 527s Total # of neighbors = 1820 527s Ave neighs/atom = 4.55 527s Neighbor list builds = 420 527s Dangerous builds = 0 527s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 527s Setting up Verlet run ... 527s Unit style : lj 527s Current step : 2000 527s Time step : 0.002 527s Per MPI rank memory allocation (min/avg/max) = 6.452 | 6.452 | 6.452 Mbytes 527s Step c_rot E_pair TotEng Press Volume 527s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 527s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 527s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 527s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 527s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 527s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 527s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 527s 2700 2.0106221 0.13364603 2.1384766 1.1322764 1639.6982 528s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 528s 2900 1.9922852 0.15256969 2.0956529 1.2419163 1639.6982 528s 3000 1.9618081 0.18405952 2.1392907 1.3468022 1639.6982 528s 3100 1.9208141 0.22640846 2.1223515 1.6487932 1639.6982 528s 3200 1.9201454 0.22718165 2.1360381 1.5370081 1639.6982 528s 3300 2.0073185 0.13690917 2.1185875 1.1974013 1639.6982 528s 3400 2.0179674 0.12601938 2.1227813 1.0847666 1639.6982 528s 3500 1.9561087 0.18991131 2.1150364 1.337739 1639.6982 528s 3600 1.9971228 0.14756112 2.1401422 1.2026317 1639.6982 528s 3700 1.9731706 0.1723087 2.1473857 1.273159 1639.6982 528s 3800 2.0001051 0.14443379 2.0995168 1.1502317 1639.6982 528s 3900 1.9911498 0.15371621 2.1424901 1.2279921 1639.6982 528s 4000 1.9825331 0.16267827 2.0899844 1.2154927 1639.6982 528s Loop time of 1.00947 on 2 procs for 2000 steps with 400 atoms 528s 528s Performance: 342359.527 tau/day, 1981.247 timesteps/s, 792.499 katom-step/s 528s 99.3% CPU use with 2 MPI tasks x 1 OpenMP threads 528s 528s MPI task timing breakdown: 528s Section | min time | avg time | max time |%varavg| %total 528s --------------------------------------------------------------- 528s Pair | 0.80007 | 0.85331 | 0.90655 | 5.8 | 84.53 528s Neigh | 0.0022637 | 0.0024751 | 0.0026865 | 0.4 | 0.25 528s Comm | 0.026222 | 0.07998 | 0.13374 | 19.0 | 7.92 528s Output | 0.014537 | 0.014835 | 0.015133 | 0.2 | 1.47 528s Modify | 0.042739 | 0.04575 | 0.04876 | 1.4 | 4.53 528s Other | | 0.01312 | | | 1.30 528s 528s Nlocal: 200 ave 212 max 188 min 528s Histogram: 1 0 0 0 0 0 0 0 0 1 528s Nghost: 171.5 ave 173 max 170 min 528s Histogram: 1 0 0 0 0 0 0 0 0 1 528s Neighs: 880.5 ave 946 max 815 min 528s Histogram: 1 0 0 0 0 0 0 0 0 1 528s 528s Total # of neighbors = 1761 528s Ave neighs/atom = 4.4025 528s Neighbor list builds = 49 528s Dangerous builds = 0 528s Total wall time: 0:00:01 528s LAMMPS (7 Feb 2024 - Update 1) 528s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 528s using 1 OpenMP thread(s) per MPI task 528s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 528s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 528s 1 by 1 by 1 MPI processor grid 528s Created 400 atoms 528s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 528s create_atoms CPU = 0.000 seconds 528s Setting atom values ... 528s 29 settings made for type/fraction 528s Setting atom values ... 528s 371 settings made for mass 528s Setting atom values ... 528s 29 settings made for mass 528s Setting atom values ... 528s 371 settings made for shape 528s Setting atom values ... 528s 29 settings made for shape 528s Setting atom values ... 528s 400 settings made for quat/random 528s 371 atoms in group spheroid 528s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 528s Neighbor list info ... 528s update: every = 1 steps, delay = 0 steps, check = yes 528s max neighbors/atom: 2000, page size: 100000 528s master list distance cutoff = 4.8 528s ghost atom cutoff = 4.8 528s binsize = 2.4, bins = 59 59 3 528s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 528s (1) pair resquared, perpetual 528s attributes: half, newton on 528s pair build: half/bin/atomonly/newton 528s stencil: half/bin/2d 528s bin: standard 528s Setting up Verlet run ... 528s Unit style : lj 528s Current step : 0 528s Time step : 0.002 528s Per MPI rank memory allocation (min/avg/max) = 4.315 | 4.315 | 4.315 Mbytes 528s Step c_rot E_pair TotEng Press Volume 528s 0 2.3158404 0 2.394 0.04788 20000 528s 100 1.7101139 0 1.7678302 0.034413192 20548.286 528s 200 2.3115592 0 2.3895743 0.04649702 20556.796 528s 300 1.831333 0 1.8931405 0.041256922 18354.646 528s 400 2.1837684 -8.9738883e-06 2.2574616 0.066522186 13574.035 528s 500 1.9709471 0.0022832653 2.017568 0.098398099 8395.6884 528s 600 2.1312025 0.15575534 2.2465639 0.43878461 4664.4094 528s 700 1.9768729 0.20704026 2.1544534 0.85727857 2661.7782 528s 800 1.8049358 0.20410493 1.965827 1.2647972 1769.9195 529s 900 1.8115555 0.2163004 1.9984639 1.6554526 1443.3838 529s 1000 1.9171641 0.2328859 2.1621182 1.7795638 1436.7766 529s 1100 1.9523886 0.09158383 2.0589755 0.91188602 1668.1861 529s 1200 2.0844678 0.062228051 2.0997798 0.63282414 2088.0586 529s 1300 1.9225253 0.052820284 1.9484124 0.44379326 2643.4175 529s 1400 2.1265088 0.033305088 2.1345672 0.34979266 3172.6223 529s 1500 1.9551661 0.053995306 2.0077177 0.34810901 3444.8372 529s 1600 2.15222 0.057084004 2.1910214 0.39212275 3290.66 529s 1700 2.0126393 0.092807299 2.0739086 0.53567035 2812.2166 529s 1800 2.1109716 0.18678852 2.2572287 1.0092292 2267.5536 529s 1900 1.9107655 0.26801333 2.1635401 1.5374301 1862.3897 529s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 529s Loop time of 1.15434 on 1 procs for 2000 steps with 400 atoms 529s 529s Performance: 299391.277 tau/day, 1732.588 timesteps/s, 693.035 katom-step/s 529s 99.0% CPU use with 1 MPI tasks x 1 OpenMP threads 529s 529s MPI task timing breakdown: 529s Section | min time | avg time | max time |%varavg| %total 529s --------------------------------------------------------------- 529s Pair | 0.93181 | 0.93181 | 0.93181 | 0.0 | 80.72 529s Neigh | 0.023037 | 0.023037 | 0.023037 | 0.0 | 2.00 529s Comm | 0.012481 | 0.012481 | 0.012481 | 0.0 | 1.08 529s Output | 0.023475 | 0.023475 | 0.023475 | 0.0 | 2.03 529s Modify | 0.15254 | 0.15254 | 0.15254 | 0.0 | 13.21 529s Other | | 0.011 | | | 0.95 529s 529s Nlocal: 400 ave 400 max 400 min 529s Histogram: 1 0 0 0 0 0 0 0 0 0 529s Nghost: 206 ave 206 max 206 min 529s Histogram: 1 0 0 0 0 0 0 0 0 0 529s Neighs: 1820 ave 1820 max 1820 min 529s Histogram: 1 0 0 0 0 0 0 0 0 0 529s 529s Total # of neighbors = 1820 529s Ave neighs/atom = 4.55 529s Neighbor list builds = 420 529s Dangerous builds = 0 529s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 529s Setting up Verlet run ... 529s Unit style : lj 529s Current step : 2000 529s Time step : 0.002 529s Per MPI rank memory allocation (min/avg/max) = 6.479 | 6.479 | 6.479 Mbytes 529s Step c_rot E_pair TotEng Press Volume 529s 2000 1.9034522 0.24431156 2.1576939 1.5998792 1639.6982 529s 2100 1.9990056 0.14555548 2.132148 1.1813518 1639.6982 530s 2200 1.9913934 0.15343329 2.1279388 1.2079524 1639.6982 530s 2300 1.9931915 0.15156716 2.1646511 1.1963228 1639.6982 530s 2400 1.9969018 0.14779678 2.1413044 1.1999441 1639.6982 530s 2500 1.9401284 0.20640998 2.168038 1.4643778 1639.6982 530s 2600 1.9492999 0.19710633 2.136292 1.3812079 1639.6982 530s 2700 2.0106221 0.13364602 2.1384766 1.1322764 1639.6982 530s 2800 1.9890373 0.15589593 2.1204126 1.2343376 1639.6982 530s 2900 1.9922852 0.15256971 2.0956529 1.2419164 1639.6982 530s 3000 1.9618081 0.18405952 2.1392906 1.3468022 1639.6982 530s 3100 1.9208145 0.22640808 2.1223513 1.6487904 1639.6982 530s 3200 1.9201455 0.22718157 2.136038 1.5370079 1639.6982 531s 3300 2.0073203 0.13690734 2.1185861 1.1973861 1639.6982 531s 3400 2.0179675 0.12601936 2.1227814 1.0847665 1639.6982 531s 3500 1.956107 0.18991303 2.1150378 1.3377467 1639.6982 531s 3600 1.9971207 0.14756338 2.1401427 1.2026439 1639.6982 531s 3700 1.9731785 0.17230049 2.1473634 1.2731222 1639.6982 531s 3800 2.0001027 0.14443629 2.0995017 1.1502317 1639.6982 531s 3900 1.9911478 0.15371832 2.1424588 1.2279852 1639.6982 531s 4000 1.9824541 0.16275998 2.0899755 1.2158078 1639.6982 531s Loop time of 1.82148 on 1 procs for 2000 steps with 400 atoms 531s 531s Performance: 189735.796 tau/day, 1098.008 timesteps/s, 439.203 katom-step/s 531s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 531s 531s MPI task timing breakdown: 531s Section | min time | avg time | max time |%varavg| %total 531s --------------------------------------------------------------- 531s Pair | 1.683 | 1.683 | 1.683 | 0.0 | 92.40 531s Neigh | 0.0046134 | 0.0046134 | 0.0046134 | 0.0 | 0.25 531s Comm | 0.011686 | 0.011686 | 0.011686 | 0.0 | 0.64 531s Output | 0.023759 | 0.023759 | 0.023759 | 0.0 | 1.30 531s Modify | 0.089028 | 0.089028 | 0.089028 | 0.0 | 4.89 531s Other | | 0.009381 | | | 0.52 531s 531s Nlocal: 400 ave 400 max 400 min 531s Histogram: 1 0 0 0 0 0 0 0 0 0 531s Nghost: 215 ave 215 max 215 min 531s Histogram: 1 0 0 0 0 0 0 0 0 0 531s Neighs: 1761 ave 1761 max 1761 min 531s Histogram: 1 0 0 0 0 0 0 0 0 0 531s 531s Total # of neighbors = 1761 531s Ave neighs/atom = 4.4025 531s Neighbor list builds = 49 531s Dangerous builds = 0 531s Total wall time: 0:00:02 531s run: OK 532s autopkgtest [01:26:48]: test ellipse: -----------------------] 536s autopkgtest [01:26:52]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 536s ellipse PASS 541s autopkgtest [01:26:56]: test flow: preparing testbed 543s Reading package lists... 543s Building dependency tree... 543s Reading state information... 543s Starting pkgProblemResolver with broken count: 0 543s Starting 2 pkgProblemResolver with broken count: 0 543s Done 544s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 553s autopkgtest [01:27:09]: test flow: [----------------------- 555s LAMMPS (7 Feb 2024 - Update 1) 555s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 555s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 555s using 1 OpenMP thread(s) per MPI task 555s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 555s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 555s 2 by 1 by 1 MPI processor grid 555s Created 420 atoms 555s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 555s create_atoms CPU = 0.000 seconds 555s 60 atoms in group lower 555s 60 atoms in group upper 555s 120 atoms in group boundary 555s 300 atoms in group flow 555s Setting atom values ... 555s 60 settings made for type 555s Setting atom values ... 555s 60 settings made for type 555s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 555s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 555s Neighbor list info ... 555s update: every = 1 steps, delay = 5 steps, check = yes 555s max neighbors/atom: 2000, page size: 100000 555s master list distance cutoff = 1.42246 555s ghost atom cutoff = 1.42246 555s binsize = 0.71123, bins = 37 32 1 555s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 555s (1) pair lj/cut, perpetual 555s attributes: half, newton on 555s pair build: half/bin/atomonly/newton 555s stencil: half/bin/2d 555s bin: standard 555s Setting up Verlet run ... 555s Unit style : lj 555s Current step : 0 555s Time step : 0.003 555s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 555s Step Temp E_pair E_mol TotEng Press Volume 555s 0 1 0 0 0.71190476 0.52314537 571.54286 555s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 555s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 555s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 555s 2000 1 -0.41053 0 0.30137476 2.8651912 571.54286 555s 2500 1.1226657 -0.37033202 0 0.42889907 2.9449242 571.54286 555s 3000 1 -0.37829439 0 0.33361038 2.724957 571.54286 555s 3500 1.0214075 -0.4474262 0 0.27971864 2.4340575 571.54286 555s 4000 1 -0.42466402 0 0.28724075 2.6468652 571.54286 555s 4500 1.0385223 -0.4060451 0 0.33328387 2.8049948 571.54286 555s 5000 1 -0.44140506 0 0.2704997 2.5732992 571.54286 555s 5500 1.0412543 -0.42975001 0 0.31152391 2.5569509 571.54286 555s 6000 1 -0.40966109 0 0.30224367 2.3906115 571.54286 555s 6500 1.0821406 -0.37547129 0 0.39490976 2.5922081 571.54286 555s 7000 1 -0.41060008 0 0.30130468 2.8506205 571.54286 555s 7500 1.0819999 -0.43038503 0 0.33989586 2.6996672 571.54286 555s 8000 1 -0.3796336 0 0.33227116 2.5245689 571.54286 555s 8500 0.94746225 -0.40425285 0 0.27025004 2.5790953 571.54286 555s 9000 1 -0.4061947 0 0.30571006 2.3866707 571.54286 555s 9500 1.0336946 -0.4404991 0 0.29539298 2.2934496 571.54286 555s 10000 1 -0.44465733 0 0.26724744 2.2764313 571.54286 555s Loop time of 0.188803 on 2 procs for 10000 steps with 420 atoms 555s 555s Performance: 13728591.924 tau/day, 52965.247 timesteps/s, 22.245 Matom-step/s 555s 88.3% CPU use with 2 MPI tasks x 1 OpenMP threads 555s 555s MPI task timing breakdown: 555s Section | min time | avg time | max time |%varavg| %total 555s --------------------------------------------------------------- 555s Pair | 0.045858 | 0.046142 | 0.046425 | 0.1 | 24.44 555s Neigh | 0.020767 | 0.020838 | 0.020908 | 0.0 | 11.04 555s Comm | 0.056278 | 0.056435 | 0.056592 | 0.1 | 29.89 555s Output | 0.00044681 | 0.00068645 | 0.0009261 | 0.0 | 0.36 555s Modify | 0.033984 | 0.034013 | 0.034042 | 0.0 | 18.02 555s Other | | 0.03069 | | | 16.25 555s 555s Nlocal: 210 ave 213 max 207 min 555s Histogram: 1 0 0 0 0 0 0 0 0 1 555s Nghost: 50.5 ave 51 max 50 min 555s Histogram: 1 0 0 0 0 0 0 0 0 1 555s Neighs: 480.5 ave 492 max 469 min 555s Histogram: 1 0 0 0 0 0 0 0 0 1 555s 555s Total # of neighbors = 961 555s Ave neighs/atom = 2.2880952 555s Neighbor list builds = 964 555s Dangerous builds = 0 555s Total wall time: 0:00:00 555s LAMMPS (7 Feb 2024 - Update 1) 555s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 555s using 1 OpenMP thread(s) per MPI task 555s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 555s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 555s 1 by 1 by 1 MPI processor grid 555s Created 420 atoms 555s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 555s create_atoms CPU = 0.000 seconds 555s 60 atoms in group lower 555s 60 atoms in group upper 555s 120 atoms in group boundary 555s 300 atoms in group flow 555s Setting atom values ... 555s 60 settings made for type 555s Setting atom values ... 555s 60 settings made for type 555s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 555s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 555s Neighbor list info ... 555s update: every = 1 steps, delay = 5 steps, check = yes 555s max neighbors/atom: 2000, page size: 100000 555s master list distance cutoff = 1.42246 555s ghost atom cutoff = 1.42246 555s binsize = 0.71123, bins = 37 32 1 555s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 555s (1) pair lj/cut, perpetual 555s attributes: half, newton on 555s pair build: half/bin/atomonly/newton 555s stencil: half/bin/2d 555s bin: standard 555s Setting up Verlet run ... 555s Unit style : lj 555s Current step : 0 555s Time step : 0.003 555s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 555s Step Temp E_pair E_mol TotEng Press Volume 555s 0 1 0 0 0.71190476 0.52314537 571.54286 555s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 555s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 555s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 555s 2000 1 -0.40814263 0 0.30376214 2.9229587 571.54286 555s 2500 1.1929729 -0.38735055 0 0.46193257 2.8337691 571.54286 555s 3000 1 -0.44542386 0 0.2664809 2.7214531 571.54286 555s 3500 1.1553179 -0.42687142 0 0.39560493 2.5109633 571.54286 555s 4000 1 -0.40604742 0 0.30585734 2.7055928 571.54286 555s 4500 1.1498154 -0.44055268 0 0.37800642 2.5561154 571.54286 555s 5000 1 -0.41742254 0 0.29448222 2.4788457 571.54286 555s 5500 1.014604 -0.42503236 0 0.29726906 2.579664 571.54286 555s 6000 1 -0.41264837 0 0.29925639 2.5861705 571.54286 555s 6500 1.1443238 -0.4392768 0 0.37537274 2.2801246 571.54286 555s 7000 1 -0.38852754 0 0.32337722 2.3294037 571.54286 555s 7500 1.0568142 -0.42350098 0 0.32885011 2.3953589 571.54286 555s 8000 1 -0.39343 0 0.31847477 2.5701342 571.54286 555s 8500 1.0872157 -0.46282796 0 0.3111661 2.2892446 571.54286 555s 9000 1 -0.402333 0 0.30957177 2.4852035 571.54286 555s 9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286 555s 10000 1 -0.43338695 0 0.27851782 2.405424 571.54286 555s Loop time of 0.241697 on 1 procs for 10000 steps with 420 atoms 555s 555s Performance: 10724187.235 tau/day, 41374.179 timesteps/s, 17.377 Matom-step/s 555s 91.1% CPU use with 1 MPI tasks x 1 OpenMP threads 555s 555s MPI task timing breakdown: 555s Section | min time | avg time | max time |%varavg| %total 555s --------------------------------------------------------------- 555s Pair | 0.091507 | 0.091507 | 0.091507 | 0.0 | 37.86 555s Neigh | 0.042164 | 0.042164 | 0.042164 | 0.0 | 17.45 555s Comm | 0.015692 | 0.015692 | 0.015692 | 0.0 | 6.49 555s Output | 0.00077177 | 0.00077177 | 0.00077177 | 0.0 | 0.32 555s Modify | 0.061447 | 0.061447 | 0.061447 | 0.0 | 25.42 555s Other | | 0.03011 | | | 12.46 555s 555s Nlocal: 420 ave 420 max 420 min 555s Histogram: 1 0 0 0 0 0 0 0 0 0 555s Nghost: 46 ave 46 max 46 min 555s Histogram: 1 0 0 0 0 0 0 0 0 0 555s Neighs: 952 ave 952 max 952 min 555s Histogram: 1 0 0 0 0 0 0 0 0 0 555s 555s Total # of neighbors = 952 555s Ave neighs/atom = 2.2666667 555s Neighbor list builds = 996 555s Dangerous builds = 0 555s Total wall time: 0:00:00 555s LAMMPS (7 Feb 2024 - Update 1) 555s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 555s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 555s using 1 OpenMP thread(s) per MPI task 555s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 555s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 555s 2 by 1 by 1 MPI processor grid 555s Created 420 atoms 555s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 555s create_atoms CPU = 0.000 seconds 555s 60 atoms in group lower 555s 60 atoms in group upper 555s 120 atoms in group boundary 555s 300 atoms in group flow 555s Setting atom values ... 555s 60 settings made for type 555s Setting atom values ... 555s 60 settings made for type 555s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 555s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 555s Neighbor list info ... 555s update: every = 1 steps, delay = 5 steps, check = yes 555s max neighbors/atom: 2000, page size: 100000 555s master list distance cutoff = 1.42246 555s ghost atom cutoff = 1.42246 555s binsize = 0.71123, bins = 37 32 1 555s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 555s (1) pair lj/cut, perpetual 555s attributes: half, newton on 555s pair build: half/bin/atomonly/newton 555s stencil: half/bin/2d 555s bin: standard 555s Setting up Verlet run ... 555s Unit style : lj 555s Current step : 0 555s Time step : 0.003 555s Per MPI rank memory allocation (min/avg/max) = 2.731 | 2.731 | 2.731 Mbytes 555s Step Temp E_pair E_mol TotEng Press Volume 555s 0 1 0 0 0.71190476 0.52314537 571.54286 555s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 555s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 555s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 555s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 555s 2500 1.2272957 -0.423819 0 0.44989866 1.454461 570.15856 555s 3000 1 -0.49143429 0 0.22047048 1.5345942 554.98632 555s 3500 1.2445009 -0.59762587 0 0.28834022 1.8753189 537.01593 555s 4000 1 -0.69889809 0 0.013006674 2.1402865 521.46673 555s 4500 1.2185161 -0.73848066 0 0.12898676 2.7425317 507.73058 555s 5000 1 -0.79158059 0 -0.079675829 3.1146693 502.02129 555s 5500 1.23812 -0.76063102 0 0.12079254 2.6101517 503.98532 555s 6000 1 -0.68093927 0 0.030965489 2.4050071 506.73975 556s 6500 1.2305347 -0.71537739 0 0.16064612 2.0966847 510.57681 556s 7000 1 -0.69996568 0 0.011939084 2.0829242 513.97036 556s 7500 1.2387996 -0.67617771 0 0.20572962 1.9857051 511.54835 556s 8000 1 -0.72135901 0 -0.0094542445 2.3327964 508.8105 556s 8500 1.2500467 -0.77802894 0 0.11188529 2.2915813 505.72027 556s 9000 1 -0.77033319 0 -0.058428426 2.4993315 503.47206 556s 9500 1.2000703 -0.74305547 0 0.11128027 2.3321564 504.5062 556s 10000 1 -0.72090813 0 -0.0090033642 2.3379679 505.23554 556s Loop time of 0.231124 on 2 procs for 10000 steps with 420 atoms 556s 556s Performance: 11214777.082 tau/day, 43266.887 timesteps/s, 18.172 Matom-step/s 556s 92.0% CPU use with 2 MPI tasks x 1 OpenMP threads 556s 556s MPI task timing breakdown: 556s Section | min time | avg time | max time |%varavg| %total 556s --------------------------------------------------------------- 556s Pair | 0.050347 | 0.050533 | 0.050718 | 0.1 | 21.86 556s Neigh | 0.012639 | 0.012828 | 0.013017 | 0.2 | 5.55 556s Comm | 0.057597 | 0.057791 | 0.057985 | 0.1 | 25.00 556s Output | 0.00045552 | 0.00070029 | 0.00094505 | 0.0 | 0.30 556s Modify | 0.078501 | 0.078675 | 0.078849 | 0.1 | 34.04 556s Other | | 0.0306 | | | 13.24 556s 556s Nlocal: 210 ave 213 max 207 min 556s Histogram: 1 0 0 0 0 0 0 0 0 1 556s Nghost: 50 ave 51 max 49 min 556s Histogram: 1 0 0 0 0 0 0 0 0 1 556s Neighs: 558.5 ave 573 max 544 min 556s Histogram: 1 0 0 0 0 0 0 0 0 1 556s 556s Total # of neighbors = 1117 556s Ave neighs/atom = 2.6595238 556s Neighbor list builds = 562 556s Dangerous builds = 0 556s Total wall time: 0:00:00 556s LAMMPS (7 Feb 2024 - Update 1) 556s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 556s using 1 OpenMP thread(s) per MPI task 556s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 556s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 556s 1 by 1 by 1 MPI processor grid 556s Created 420 atoms 556s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 556s create_atoms CPU = 0.000 seconds 556s 60 atoms in group lower 556s 60 atoms in group upper 556s 120 atoms in group boundary 556s 300 atoms in group flow 556s Setting atom values ... 556s 60 settings made for type 556s Setting atom values ... 556s 60 settings made for type 556s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 556s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 556s Neighbor list info ... 556s update: every = 1 steps, delay = 5 steps, check = yes 556s max neighbors/atom: 2000, page size: 100000 556s master list distance cutoff = 1.42246 556s ghost atom cutoff = 1.42246 556s binsize = 0.71123, bins = 37 32 1 556s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 556s (1) pair lj/cut, perpetual 556s attributes: half, newton on 556s pair build: half/bin/atomonly/newton 556s stencil: half/bin/2d 556s bin: standard 556s Setting up Verlet run ... 556s Unit style : lj 556s Current step : 0 556s Time step : 0.003 556s Per MPI rank memory allocation (min/avg/max) = 2.735 | 2.735 | 2.735 Mbytes 556s Step Temp E_pair E_mol TotEng Press Volume 556s 0 1 0 0 0.71190476 0.52314537 571.54286 556s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 556s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 556s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 556s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 556s 2500 1.2236323 -0.40128446 0 0.46982521 1.4276891 570.03729 556s 3000 1 -0.48849353 0 0.22341123 1.5091361 553.64637 556s 3500 1.2404547 -0.63017551 0 0.25291012 1.768107 535.22599 556s 4000 1 -0.71545964 0 -0.0035548789 2.2079822 516.73161 556s 4500 1.2270239 -0.78740977 0 0.086114399 2.6094706 503.17906 556s 5000 1 -0.8367971 0 -0.12489233 3.186175 498.73275 556s 5500 1.2257721 -0.77200456 0 0.10062844 2.6369599 502.75573 556s 6000 1 -0.6766551 0 0.035249665 2.2092944 512.08396 556s 6500 1.2201203 -0.67876788 0 0.18984154 1.8784541 517.92079 556s 7000 1 -0.68555696 0 0.026347797 1.8142356 516.44963 556s 7500 1.2482526 -0.7345934 0 0.15404357 2.0253109 511.4042 556s 8000 1 -0.70068231 0 0.011222455 2.1739831 504.55527 556s 8500 1.2151375 -0.77680457 0 0.088257564 2.6264947 498.00946 556s 9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523 556s 9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877 556s 10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444 556s Loop time of 0.272488 on 1 procs for 10000 steps with 420 atoms 556s 556s Performance: 9512338.411 tau/day, 36698.836 timesteps/s, 15.414 Matom-step/s 556s 95.3% CPU use with 1 MPI tasks x 1 OpenMP threads 556s 556s MPI task timing breakdown: 556s Section | min time | avg time | max time |%varavg| %total 556s --------------------------------------------------------------- 556s Pair | 0.10027 | 0.10027 | 0.10027 | 0.0 | 36.80 556s Neigh | 0.023475 | 0.023475 | 0.023475 | 0.0 | 8.61 556s Comm | 0.012549 | 0.012549 | 0.012549 | 0.0 | 4.61 556s Output | 0.00090625 | 0.00090625 | 0.00090625 | 0.0 | 0.33 556s Modify | 0.10688 | 0.10688 | 0.10688 | 0.0 | 39.22 556s Other | | 0.02841 | | | 10.43 556s 556s Nlocal: 420 ave 420 max 420 min 556s Histogram: 1 0 0 0 0 0 0 0 0 0 556s Nghost: 48 ave 48 max 48 min 556s Histogram: 1 0 0 0 0 0 0 0 0 0 556s Neighs: 1124 ave 1124 max 1124 min 556s Histogram: 1 0 0 0 0 0 0 0 0 0 556s 556s Total # of neighbors = 1124 556s Ave neighs/atom = 2.6761905 556s Neighbor list builds = 561 556s Dangerous builds = 0 556s Total wall time: 0:00:00 556s run: OK 556s autopkgtest [01:27:12]: test flow: -----------------------] 561s flow PASS 561s autopkgtest [01:27:17]: test flow: - - - - - - - - - - results - - - - - - - - - - 565s autopkgtest [01:27:21]: test friction: preparing testbed 567s Reading package lists... 567s Building dependency tree... 567s Reading state information... 567s Starting pkgProblemResolver with broken count: 0 568s Starting 2 pkgProblemResolver with broken count: 0 568s Done 568s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 578s autopkgtest [01:27:34]: test friction: [----------------------- 580s LAMMPS (7 Feb 2024 - Update 1) 580s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 580s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 580s using 1 OpenMP thread(s) per MPI task 580s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 580s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 580s 2 by 1 by 1 MPI processor grid 580s Created 750 atoms 580s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 580s create_atoms CPU = 0.001 seconds 580s Created 750 atoms 580s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 580s create_atoms CPU = 0.000 seconds 580s Created 112 atoms 580s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 580s create_atoms CPU = 0.000 seconds 580s Created 112 atoms 580s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 580s create_atoms CPU = 0.000 seconds 580s 750 atoms in group lo 580s 862 atoms in group lo 580s 750 atoms in group hi 580s 862 atoms in group hi 580s 150 atoms in group lo-fixed 580s 150 atoms in group hi-fixed 580s 300 atoms in group boundary 580s 1424 atoms in group mobile 580s Setting atom values ... 580s 150 settings made for type 580s Setting atom values ... 580s 150 settings made for type 580s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 580s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 580s Neighbor list info ... 580s update: every = 1 steps, delay = 5 steps, check = yes 580s max neighbors/atom: 2000, page size: 100000 580s master list distance cutoff = 2.8 580s ghost atom cutoff = 2.8 580s binsize = 1.4, bins = 41 31 1 580s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 580s (1) pair lj/cut, perpetual 580s attributes: half, newton on 580s pair build: half/bin/atomonly/newton 580s stencil: half/bin/2d 580s bin: standard 580s Setting up Verlet run ... 580s Unit style : lj 580s Current step : 0 580s Time step : 0.0025 580s Per MPI rank memory allocation (min/avg/max) = 2.737 | 2.737 | 2.737 Mbytes 580s Step Temp E_pair E_mol TotEng Press Volume 580s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 580s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 580s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 580s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 580s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 580s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 581s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314787 2444.9333 581s 7000 0.11587092 -3.0413277 0 -2.9935074 -0.37543734 2444.9333 581s 8000 0.1 -3.0296549 0 -2.9883846 -0.41894885 2444.9333 581s 9000 0.11363101 -3.0247314 0 -2.9778355 -0.43224741 2444.9333 581s 10000 0.11551834 -3.0287315 0 -2.9810568 -0.37046468 2444.9333 581s 11000 0.1131303 -3.0177397 0 -2.9710505 -0.48802477 2444.9333 582s 12000 0.1 -3.0280411 0 -2.9867708 -0.23387667 2444.9333 582s 13000 0.11507336 -3.0315952 0 -2.984104 -0.40349366 2444.9333 582s 14000 0.11501583 -3.0318726 0 -2.9844053 -0.31400965 2444.9333 582s 15000 0.10799871 -3.0337962 0 -2.9892248 -0.32505402 2444.9333 582s 16000 0.10673344 -3.0405071 0 -2.9964579 -0.24604448 2444.9333 582s 17000 0.10623843 -3.0391607 0 -2.9953158 -0.44372008 2444.9333 582s 18000 0.11358768 -3.0422681 0 -2.9953901 -0.30148543 2444.9333 582s 19000 0.11591119 -3.0468785 0 -2.9990416 -0.33570287 2444.9333 583s 20000 0.11149703 -3.0428984 0 -2.9968833 -0.34952494 2444.9333 583s Loop time of 2.89971 on 2 procs for 20000 steps with 1724 atoms 583s 583s Performance: 1489803.521 tau/day, 6897.239 timesteps/s, 11.891 Matom-step/s 583s 98.2% CPU use with 2 MPI tasks x 1 OpenMP threads 583s 583s MPI task timing breakdown: 583s Section | min time | avg time | max time |%varavg| %total 583s --------------------------------------------------------------- 583s Pair | 1.9294 | 2.0622 | 2.195 | 9.2 | 71.12 583s Neigh | 0.10751 | 0.11758 | 0.12766 | 2.9 | 4.06 583s Comm | 0.20354 | 0.34871 | 0.49387 | 24.6 | 12.03 583s Output | 0.00060985 | 0.00098097 | 0.0013521 | 0.0 | 0.03 583s Modify | 0.21915 | 0.23118 | 0.2432 | 2.5 | 7.97 583s Other | | 0.1391 | | | 4.80 583s 583s Nlocal: 862 ave 868 max 856 min 583s Histogram: 1 0 0 0 0 0 0 0 0 1 583s Nghost: 160.5 ave 161 max 160 min 583s Histogram: 1 0 0 0 0 0 0 0 0 1 583s Neighs: 7178.5 ave 7223 max 7134 min 583s Histogram: 1 0 0 0 0 0 0 0 0 1 583s 583s Total # of neighbors = 14357 583s Ave neighs/atom = 8.3277262 583s Neighbor list builds = 716 583s Dangerous builds = 0 583s Total wall time: 0:00:02 583s LAMMPS (7 Feb 2024 - Update 1) 583s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 583s using 1 OpenMP thread(s) per MPI task 583s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 583s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 583s 1 by 1 by 1 MPI processor grid 583s Created 750 atoms 583s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 583s create_atoms CPU = 0.000 seconds 583s Created 750 atoms 583s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 583s create_atoms CPU = 0.000 seconds 583s Created 112 atoms 583s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 583s create_atoms CPU = 0.000 seconds 583s Created 112 atoms 583s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 583s create_atoms CPU = 0.000 seconds 583s 750 atoms in group lo 583s 862 atoms in group lo 583s 750 atoms in group hi 583s 862 atoms in group hi 583s 150 atoms in group lo-fixed 583s 150 atoms in group hi-fixed 583s 300 atoms in group boundary 583s 1424 atoms in group mobile 583s Setting atom values ... 583s 150 settings made for type 583s Setting atom values ... 583s 150 settings made for type 583s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 583s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 583s Neighbor list info ... 583s update: every = 1 steps, delay = 5 steps, check = yes 583s max neighbors/atom: 2000, page size: 100000 583s master list distance cutoff = 2.8 583s ghost atom cutoff = 2.8 583s binsize = 1.4, bins = 41 31 1 583s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 583s (1) pair lj/cut, perpetual 583s attributes: half, newton on 583s pair build: half/bin/atomonly/newton 583s stencil: half/bin/2d 583s bin: standard 583s Setting up Verlet run ... 583s Unit style : lj 583s Current step : 0 583s Time step : 0.0025 583s Per MPI rank memory allocation (min/avg/max) = 2.746 | 2.746 | 2.746 Mbytes 583s Step Temp E_pair E_mol TotEng Press Volume 583s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 583s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 583s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 583s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 584s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 584s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 584s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 584s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431666 2444.9333 585s 8000 0.10658282 -3.0364048 0 -2.9924178 -0.45722834 2444.9333 585s 9000 0.11650947 -3.0271611 0 -2.9790773 -0.4588819 2444.9333 585s 10000 0.10575546 -3.0298463 0 -2.9862007 -0.35241095 2444.9333 586s 11000 0.10953331 -3.0352955 0 -2.9900908 -0.4622173 2444.9333 586s 12000 0.11720787 -3.0378371 0 -2.989465 -0.27733023 2444.9333 586s 13000 0.11492573 -3.037974 0 -2.9905438 -0.43259084 2444.9333 586s 14000 0.11125454 -3.0413758 0 -2.9954607 -0.31244429 2444.9333 586s 15000 0.10882772 -3.0406062 0 -2.9956927 -0.30403665 2444.9333 587s 16000 0.1152685 -3.0433936 0 -2.9958219 -0.26659294 2444.9333 587s 17000 0.10840025 -3.0414208 0 -2.9966837 -0.36183887 2444.9333 587s 18000 0.11159326 -3.0416392 0 -2.9955843 -0.22725121 2444.9333 587s 19000 0.11530974 -3.0457005 0 -2.9981118 -0.36488457 2444.9333 588s 20000 0.1131733 -3.0417814 0 -2.9950744 -0.27902539 2444.9333 588s Loop time of 5.05278 on 1 procs for 20000 steps with 1724 atoms 588s 588s Performance: 854974.958 tau/day, 3958.217 timesteps/s, 6.824 Matom-step/s 588s 98.2% CPU use with 1 MPI tasks x 1 OpenMP threads 588s 588s MPI task timing breakdown: 588s Section | min time | avg time | max time |%varavg| %total 588s --------------------------------------------------------------- 588s Pair | 4.1389 | 4.1389 | 4.1389 | 0.0 | 81.91 588s Neigh | 0.21966 | 0.21966 | 0.21966 | 0.0 | 4.35 588s Comm | 0.058241 | 0.058241 | 0.058241 | 0.0 | 1.15 588s Output | 0.0013026 | 0.0013026 | 0.0013026 | 0.0 | 0.03 588s Modify | 0.45983 | 0.45983 | 0.45983 | 0.0 | 9.10 588s Other | | 0.1748 | | | 3.46 588s 588s Nlocal: 1724 ave 1724 max 1724 min 588s Histogram: 1 0 0 0 0 0 0 0 0 0 588s Nghost: 144 ave 144 max 144 min 588s Histogram: 1 0 0 0 0 0 0 0 0 0 588s Neighs: 14364 ave 14364 max 14364 min 588s Histogram: 1 0 0 0 0 0 0 0 0 0 588s 588s Total # of neighbors = 14364 588s Ave neighs/atom = 8.3317865 588s Neighbor list builds = 714 588s Dangerous builds = 0 588s Total wall time: 0:00:05 588s run: OK 588s autopkgtest [01:27:44]: test friction: -----------------------] 593s friction PASS 593s autopkgtest [01:27:49]: test friction: - - - - - - - - - - results - - - - - - - - - - 597s autopkgtest [01:27:53]: test hugo: preparing testbed 598s Reading package lists... 599s Building dependency tree... 599s Reading state information... 599s Starting pkgProblemResolver with broken count: 0 599s Starting 2 pkgProblemResolver with broken count: 0 599s Done 600s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 608s autopkgtest [01:28:04]: test hugo: [----------------------- 610s LAMMPS (7 Feb 2024 - Update 1) 610s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 610s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 610s using 1 OpenMP thread(s) per MPI task 610s Lattice spacing in x,y,z = 1.4142135 2 2 610s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 610s 1 by 1 by 2 MPI processor grid 610s Created 1000 atoms 610s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 610s create_atoms CPU = 0.000 seconds 610s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 610s Neighbor list info ... 610s update: every = 1 steps, delay = 0 steps, check = yes 610s max neighbors/atom: 2000, page size: 100000 610s master list distance cutoff = 1.8475372 610s ghost atom cutoff = 1.8475372 610s binsize = 0.92376862, bins = 8 11 11 610s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 610s (1) pair lj/cubic, perpetual 610s attributes: half, newton on 610s pair build: half/bin/atomonly/newton 610s stencil: half/bin/3d 610s bin: standard 610s Setting up cg style minimization ... 610s Unit style : lj 610s Current step : 0 610s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 610s (src/min.cpp:219) 610s Per MPI rank memory allocation (min/avg/max) = 3.924 | 3.924 | 3.924 Mbytes 610s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 610s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 610s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 610s 134 0 -6.3344253 -6.3344253 -4.3497387e-13 -4.7220431e-13 -4.7089748e-13 6.9780267 9.8684199 9.8684199 610s Loop time of 0.0383108 on 2 procs for 134 steps with 1000 atoms 610s 610s 96.1% CPU use with 2 MPI tasks x 1 OpenMP threads 610s 610s Minimization stats: 610s Stopping criterion = force tolerance 610s Energy initial, next-to-last, final = 610s -6.29375358358574 -6.33442531515467 -6.33442531515467 610s Force two-norm initial, final = 3395.2895 5.5900884e-10 610s Force max component initial, final = 1960.2713 3.2516979e-10 610s Final line search alpha, max atom move = 1 3.2516979e-10 610s Iterations, force evaluations = 134 137 610s 610s MPI task timing breakdown: 610s Section | min time | avg time | max time |%varavg| %total 610s --------------------------------------------------------------- 610s Pair | 0.022688 | 0.024007 | 0.025325 | 0.9 | 62.66 610s Neigh | 0.00040428 | 0.00046404 | 0.00052381 | 0.0 | 1.21 610s Comm | 0.0034768 | 0.0048309 | 0.006185 | 1.9 | 12.61 610s Output | 2.7e-05 | 4.3541e-05 | 6.0081e-05 | 0.0 | 0.11 610s Modify | 0 | 0 | 0 | 0.0 | 0.00 610s Other | | 0.008966 | | | 23.40 610s 610s Nlocal: 500 ave 550 max 450 min 610s Histogram: 1 0 0 0 0 0 0 0 0 1 610s Nghost: 1214 ave 1264 max 1164 min 610s Histogram: 1 0 0 0 0 0 0 0 0 1 610s Neighs: 10500 ave 11550 max 9450 min 610s Histogram: 1 0 0 0 0 0 0 0 0 1 611s 611s Total # of neighbors = 21000 611s Ave neighs/atom = 21 611s Neighbor list builds = 1 611s Dangerous builds = 0 611s System init for write_restart ... 611s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 611s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 611s using 1 OpenMP thread(s) per MPI task 611s Reading restart file ... 611s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 611s restoring atom style atomic from restart 611s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 611s 1 by 1 by 2 MPI processor grid 611s restoring pair style lj/cubic from restart 611s 1000 atoms 611s read_restart CPU = 0.001 seconds 611s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 611s Neighbor list info ... 611s update: every = 1 steps, delay = 0 steps, check = yes 611s max neighbors/atom: 2000, page size: 100000 611s master list distance cutoff = 1.7475372 611s ghost atom cutoff = 1.7475372 611s binsize = 0.87376862, bins = 8 12 12 611s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 611s (1) pair lj/cubic, perpetual 611s attributes: half, newton on 611s pair build: half/bin/atomonly/newton 611s stencil: half/bin/3d 611s bin: standard 611s Setting up Verlet run ... 611s Unit style : lj 611s Current step : 0 611s Time step : 0.001 611s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 611s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 611s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 611s 1000 0.010142951 0.015199212 -2.1715786 -4183.8734 129.07448 58.487036 8.3141728 -4.1817171 0.93612119 23.511325 3.7371582 611s 2000 0.37217696 0.55770718 -5.501671 -1113.5078 12.361734 0.56717221 9.4220234 -1.1085639 -0.39798945 13.397419 0.62811105 611s 3000 0.52025677 0.77960476 -3.8549126 -3288.4446 57.946721 16.7702 8.5666574 -3.2853693 -0.20934692 17.195254 2.2940268 612s 4000 0.52000674 0.77923009 -4.0042813 -3180.1686 42.281055 5.2538452 8.5173574 -3.1769436 -0.37279124 14.42108 1.9958424 612s 5000 0.26632329 0.39908545 -5.1559109 -1725.4657 25.17764 3.3288258 8.8480337 -1.7207089 -0.22616494 12.779441 1.3411624 612s 6000 0.14673418 0.21988117 -3.7657368 -1845.8673 60.573444 14.615699 8.242708 -1.8423215 0.21289355 15.752155 2.6177037 613s 7000 0.085950705 0.12879713 -5.1644144 -1924.7174 30.48448 5.8732723 8.6787408 -1.9196818 -0.010600412 13.03827 1.5916113 613s 8000 0.040267888 0.060341431 -4.7547111 -1486.1603 41.506923 9.5593428 8.4878924 -1.4814659 0.11935469 14.137029 1.9986677 613s 9000 0.025458786 0.038149991 -4.5523455 -1642.5001 44.838555 9.9866475 8.4152155 -1.6379859 0.15016793 14.325688 2.1306608 614s 10000 0.013645992 0.020448519 -5.2852664 -2425.1699 28.141793 5.1524388 8.6994187 -2.419905 0.02671273 12.635999 1.516074 614s Loop time of 3.28951 on 2 procs for 10000 steps with 1000 atoms 614s 614s Performance: 262653.407 tau/day, 3039.970 timesteps/s, 3.040 Matom-step/s 614s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads 614s 614s MPI task timing breakdown: 614s Section | min time | avg time | max time |%varavg| %total 614s --------------------------------------------------------------- 614s Pair | 2.1237 | 2.2005 | 2.2773 | 5.2 | 66.89 614s Neigh | 0.088829 | 0.092921 | 0.097013 | 1.3 | 2.82 614s Comm | 0.25291 | 0.33061 | 0.4083 | 13.5 | 10.05 614s Output | 0.00078557 | 0.00087893 | 0.00097229 | 0.0 | 0.03 614s Modify | 0.57788 | 0.57948 | 0.58109 | 0.2 | 17.62 614s Other | | 0.08513 | | | 2.59 614s 614s Nlocal: 500 ave 510 max 490 min 614s Histogram: 1 0 0 0 0 0 0 0 0 1 614s Nghost: 1351.5 ave 1357 max 1346 min 614s Histogram: 1 0 0 0 0 0 0 0 0 1 614s Neighs: 10160.5 ave 10780 max 9541 min 614s Histogram: 1 0 0 0 0 0 0 0 0 1 614s 614s Total # of neighbors = 20321 614s Ave neighs/atom = 20.321 614s Neighbor list builds = 194 614s Dangerous builds = 0 614s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 614s using 1 OpenMP thread(s) per MPI task 614s Reading restart file ... 614s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 614s restoring atom style atomic from restart 614s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 614s 1 by 1 by 2 MPI processor grid 614s restoring pair style lj/cubic from restart 614s 1000 atoms 614s read_restart CPU = 0.001 seconds 614s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 614s Neighbor list info ... 614s update: every = 1 steps, delay = 0 steps, check = yes 614s max neighbors/atom: 2000, page size: 100000 614s master list distance cutoff = 1.7475372 614s ghost atom cutoff = 1.7475372 614s binsize = 0.87376862, bins = 8 12 12 614s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 614s (1) pair lj/cubic, perpetual 614s attributes: half, newton on 614s pair build: half/bin/atomonly/newton 614s stencil: half/bin/3d 614s bin: standard 614s Setting up Verlet run ... 614s Unit style : lj 614s Current step : 0 614s Time step : 0.001 614s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 614s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 614s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 614s 1000 0.0062486434 0.0093635921 -5.9891167 -1670.9585 18.915821 7.5825014 9.233799 -1.6649788 0.023420172 13.975961 0.92134379 614s 2000 0.0067916638 0.010177308 -5.4565133 -2537.9542 37.064222 15.536207 8.949588 -2.5325079 0.10233218 16.324942 1.5455443 615s 3000 0.0073287622 0.01098215 -5.3664364 -2643.9475 39.90842 16.808813 8.915463 -2.638592 0.11823484 16.639094 1.6327251 615s 4000 0.0070205928 0.010520358 -5.3625886 -2655.7942 40.007504 16.850221 8.9144166 -2.6504422 0.11869019 16.650758 1.6356322 615s 5000 0.007504613 0.011245663 -5.3630526 -2664.53 39.995767 16.844528 8.9145098 -2.6591782 0.11842922 16.649115 1.6353137 615s 6000 0.0076250338 0.011426113 -5.3627977 -2673.3599 39.995632 16.842795 8.9145438 -2.6680085 0.11826685 16.649378 1.6352823 616s 7000 0.0075689977 0.011342143 -5.3621825 -2682.2145 40.003065 16.845001 8.9145477 -2.6768636 0.11817069 16.650959 1.6354309 616s 8000 0.0078519894 0.011766206 -5.3620929 -2691.0711 39.995512 16.838121 8.9145618 -2.6857208 0.11790857 16.649508 1.6352647 616s 9000 0.0084026053 0.012591304 -5.3624375 -2700.1249 40.00216 16.845103 8.9145931 -2.694775 0.11780799 16.65116 1.6353742 617s 10000 0.0087571135 0.013122535 -5.3624901 -2708.9831 39.996386 16.840912 8.9146292 -2.7036337 0.11756735 16.650267 1.6352259 617s Loop time of 2.82575 on 2 procs for 10000 steps with 1000 atoms 617s 617s Performance: 305759.750 tau/day, 3538.886 timesteps/s, 3.539 Matom-step/s 617s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads 617s 617s MPI task timing breakdown: 617s Section | min time | avg time | max time |%varavg| %total 617s --------------------------------------------------------------- 617s Pair | 1.9268 | 1.9373 | 1.9479 | 0.8 | 68.56 617s Neigh | 0.0046168 | 0.004621 | 0.0046251 | 0.0 | 0.16 617s Comm | 0.22747 | 0.23808 | 0.24869 | 2.2 | 8.43 617s Output | 0.00078181 | 0.00088967 | 0.00099753 | 0.0 | 0.03 617s Modify | 0.56982 | 0.57025 | 0.57068 | 0.1 | 20.18 617s Other | | 0.07457 | | | 2.64 617s 617s Nlocal: 500 ave 503 max 497 min 617s Histogram: 1 0 0 0 0 0 0 0 0 1 617s Nghost: 1214 ave 1217 max 1211 min 617s Histogram: 1 0 0 0 0 0 0 0 0 1 617s Neighs: 10500 ave 10560 max 10440 min 617s Histogram: 1 0 0 0 0 0 0 0 0 1 617s 617s Total # of neighbors = 21000 617s Ave neighs/atom = 21 617s Neighbor list builds = 10 617s Dangerous builds = 0 617s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 617s using 1 OpenMP thread(s) per MPI task 617s Reading restart file ... 617s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 617s restoring atom style atomic from restart 617s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 617s 1 by 1 by 2 MPI processor grid 617s restoring pair style lj/cubic from restart 617s 1000 atoms 617s read_restart CPU = 0.000 seconds 617s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 617s Neighbor list info ... 617s update: every = 1 steps, delay = 0 steps, check = yes 617s max neighbors/atom: 2000, page size: 100000 617s master list distance cutoff = 1.7475372 617s ghost atom cutoff = 1.7475372 617s binsize = 0.87376862, bins = 8 12 12 617s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 617s (1) pair lj/cubic, perpetual 617s attributes: half, newton on 617s pair build: half/bin/atomonly/newton 617s stencil: half/bin/3d 617s bin: standard 617s Setting up Verlet run ... 617s Unit style : lj 617s Current step : 0 617s Time step : 0.001 617s Per MPI rank memory allocation (min/avg/max) = 2.799 | 2.799 | 2.799 Mbytes 617s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 617s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 617s 1000 0.0081680995 0.012239897 -5.502183 -838.86998 35.611847 14.887133 8.9677725 -0.83338004 0.093826643 16.159657 1.5001702 617s 2000 0.019411571 0.02908824 -5.2936173 -1019.8648 41.786268 17.574468 8.8958707 -1.0146003 0.11822851 16.856679 1.6874844 617s 3000 0.047493358 0.071168797 -5.3442104 -973.41424 39.063178 16.131155 8.932271 -0.9681412 0.073773934 16.606449 1.6012863 618s 4000 0.11967749 0.17933672 -5.2091216 -1305.4423 40.847348 16.439268 8.9207902 -1.3004125 0.017533293 16.880106 1.647278 618s 5000 0.1321076 0.19796323 -5.2602273 -1221.8186 39.035827 15.56534 8.9413169 -1.2167564 -0.00091184948 16.679969 1.5931121 618s 6000 0.14696328 0.22022448 -5.1837201 -1395.6748 40.850308 16.268271 8.9221523 -1.3907113 -0.0051917075 16.892648 1.6461742 619s 7000 0.12077248 0.18097755 -5.2583118 -1181.0031 39.190631 15.648852 8.9380865 -1.1759258 0.0072501862 16.684492 1.5989963 619s 8000 0.14329465 0.21472703 -5.1714516 -1352.4587 40.863939 16.196848 8.9218327 -1.347502 -0.0071500832 16.892664 1.646722 619s 9000 0.12213842 0.18302442 -5.259117 -1191.6806 39.213345 15.658699 8.9368295 -1.1866045 0.0076494093 16.678266 1.6005204 620s 10000 0.1480674 0.221879 -5.1796888 -1362.5622 40.676046 16.107317 8.9229551 -1.3576044 -0.0093926147 16.863607 1.6419747 620s Loop time of 2.95881 on 2 procs for 10000 steps with 1000 atoms 620s 620s Performance: 292008.973 tau/day, 3379.733 timesteps/s, 3.380 Matom-step/s 620s 98.4% CPU use with 2 MPI tasks x 1 OpenMP threads 620s 620s MPI task timing breakdown: 620s Section | min time | avg time | max time |%varavg| %total 620s --------------------------------------------------------------- 620s Pair | 1.9915 | 1.9952 | 1.999 | 0.3 | 67.43 620s Neigh | 0.042571 | 0.042668 | 0.042765 | 0.0 | 1.44 620s Comm | 0.25328 | 0.25758 | 0.26187 | 0.8 | 8.71 620s Output | 0.00082389 | 0.00093649 | 0.0010491 | 0.0 | 0.03 620s Modify | 0.58285 | 0.58435 | 0.58586 | 0.2 | 19.75 620s Other | | 0.07805 | | | 2.64 620s 620s Nlocal: 500 ave 503 max 497 min 620s Histogram: 1 0 0 0 0 0 0 0 0 1 620s Nghost: 1217.5 ave 1219 max 1216 min 620s Histogram: 1 0 0 0 0 0 0 0 0 1 620s Neighs: 10291 ave 10353 max 10229 min 620s Histogram: 1 0 0 0 0 0 0 0 0 1 620s 620s Total # of neighbors = 20582 620s Ave neighs/atom = 20.582 620s Neighbor list builds = 89 620s Dangerous builds = 0 620s Total wall time: 0:00:09 620s LAMMPS (7 Feb 2024 - Update 1) 620s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 620s using 1 OpenMP thread(s) per MPI task 620s Lattice spacing in x,y,z = 1.4142135 2 2 620s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 620s 1 by 1 by 1 MPI processor grid 620s Created 1000 atoms 620s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 620s create_atoms CPU = 0.000 seconds 620s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 620s Neighbor list info ... 620s update: every = 1 steps, delay = 0 steps, check = yes 620s max neighbors/atom: 2000, page size: 100000 620s master list distance cutoff = 1.8475372 620s ghost atom cutoff = 1.8475372 620s binsize = 0.92376862, bins = 8 11 11 620s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 620s (1) pair lj/cubic, perpetual 620s attributes: half, newton on 620s pair build: half/bin/atomonly/newton 620s stencil: half/bin/3d 620s bin: standard 620s Setting up cg style minimization ... 620s Unit style : lj 620s Current step : 0 620s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 620s (src/min.cpp:219) 620s Per MPI rank memory allocation (min/avg/max) = 3.934 | 3.934 | 3.934 Mbytes 620s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 620s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 620s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 620s 134 0 -6.3344253 -6.3344253 -4.3330648e-13 -4.7530261e-13 -4.7130069e-13 6.9780267 9.8684199 9.8684199 620s Loop time of 0.0611154 on 1 procs for 134 steps with 1000 atoms 620s 620s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 620s 620s Minimization stats: 620s Stopping criterion = force tolerance 620s Energy initial, next-to-last, final = 620s -6.29375358358557 -6.33442531515503 -6.33442531515503 620s Force two-norm initial, final = 3395.2895 5.5740327e-10 620s Force max component initial, final = 1960.2713 3.2730334e-10 620s Final line search alpha, max atom move = 1 3.2730334e-10 620s Iterations, force evaluations = 134 137 620s 620s MPI task timing breakdown: 620s Section | min time | avg time | max time |%varavg| %total 620s --------------------------------------------------------------- 620s Pair | 0.047162 | 0.047162 | 0.047162 | 0.0 | 77.17 620s Neigh | 0.00086441 | 0.00086441 | 0.00086441 | 0.0 | 1.41 620s Comm | 0.0013754 | 0.0013754 | 0.0013754 | 0.0 | 2.25 620s Output | 5.6641e-05 | 5.6641e-05 | 5.6641e-05 | 0.0 | 0.09 620s Modify | 0 | 0 | 0 | 0.0 | 0.00 620s Other | | 0.01166 | | | 19.07 620s 620s Nlocal: 1000 ave 1000 max 1000 min 620s Histogram: 1 0 0 0 0 0 0 0 0 0 620s Nghost: 1724 ave 1724 max 1724 min 620s Histogram: 1 0 0 0 0 0 0 0 0 0 620s Neighs: 21000 ave 21000 max 21000 min 620s Histogram: 1 0 0 0 0 0 0 0 0 0 620s 620s Total # of neighbors = 21000 620s Ave neighs/atom = 21 620s Neighbor list builds = 1 620s Dangerous builds = 0 620s System init for write_restart ... 620s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 620s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 620s using 1 OpenMP thread(s) per MPI task 620s Reading restart file ... 620s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 620s restoring atom style atomic from restart 620s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 620s 1 by 1 by 1 MPI processor grid 620s restoring pair style lj/cubic from restart 620s 1000 atoms 620s read_restart CPU = 0.000 seconds 620s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 620s Neighbor list info ... 620s update: every = 1 steps, delay = 0 steps, check = yes 620s max neighbors/atom: 2000, page size: 100000 620s master list distance cutoff = 1.7475372 620s ghost atom cutoff = 1.7475372 620s binsize = 0.87376862, bins = 8 12 12 620s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 620s (1) pair lj/cubic, perpetual 620s attributes: half, newton on 620s pair build: half/bin/atomonly/newton 620s stencil: half/bin/3d 620s bin: standard 620s Setting up Verlet run ... 620s Unit style : lj 620s Current step : 0 620s Time step : 0.001 620s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 620s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 620s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 620s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 621s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 621s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 622s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 624s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 624s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 624s 7000 0.094832866 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659776 12.95347 1.8841809 624s 8000 0.043338745 0.06494311 -4.6249403 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 625s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 625s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 625s Loop time of 5.51121 on 1 procs for 10000 steps with 1000 atoms 625s 625s Performance: 156771.421 tau/day, 1814.484 timesteps/s, 1.814 Matom-step/s 625s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 625s 625s MPI task timing breakdown: 625s Section | min time | avg time | max time |%varavg| %total 625s --------------------------------------------------------------- 625s Pair | 4.4256 | 4.4256 | 4.4256 | 0.0 | 80.30 625s Neigh | 0.17618 | 0.17618 | 0.17618 | 0.0 | 3.20 625s Comm | 0.11429 | 0.11429 | 0.11429 | 0.0 | 2.07 625s Output | 0.0011843 | 0.0011843 | 0.0011843 | 0.0 | 0.02 625s Modify | 0.70477 | 0.70477 | 0.70477 | 0.0 | 12.79 625s Other | | 0.08918 | | | 1.62 625s 625s Nlocal: 1000 ave 1000 max 1000 min 625s Histogram: 1 0 0 0 0 0 0 0 0 0 625s Nghost: 1886 ave 1886 max 1886 min 625s Histogram: 1 0 0 0 0 0 0 0 0 0 625s Neighs: 20874 ave 20874 max 20874 min 625s Histogram: 1 0 0 0 0 0 0 0 0 0 625s 625s Total # of neighbors = 20874 625s Ave neighs/atom = 20.874 625s Neighbor list builds = 188 625s Dangerous builds = 0 625s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 625s using 1 OpenMP thread(s) per MPI task 625s Reading restart file ... 625s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 625s restoring atom style atomic from restart 625s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 625s 1 by 1 by 1 MPI processor grid 625s restoring pair style lj/cubic from restart 625s 1000 atoms 625s read_restart CPU = 0.001 seconds 625s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 625s Neighbor list info ... 625s update: every = 1 steps, delay = 0 steps, check = yes 625s max neighbors/atom: 2000, page size: 100000 625s master list distance cutoff = 1.7475372 625s ghost atom cutoff = 1.7475372 625s binsize = 0.87376862, bins = 8 12 12 625s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 625s (1) pair lj/cubic, perpetual 625s attributes: half, newton on 625s pair build: half/bin/atomonly/newton 625s stencil: half/bin/3d 625s bin: standard 625s Setting up Verlet run ... 625s Unit style : lj 625s Current step : 0 625s Time step : 0.001 625s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 625s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 625s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 626s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 626s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 627s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 627s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 628s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 628s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 629s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 629s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 630s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 630s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 630s Loop time of 4.76915 on 1 procs for 10000 steps with 1000 atoms 630s 630s Performance: 181164.442 tau/day, 2096.811 timesteps/s, 2.097 Matom-step/s 630s 99.0% CPU use with 1 MPI tasks x 1 OpenMP threads 630s 630s MPI task timing breakdown: 630s Section | min time | avg time | max time |%varavg| %total 630s --------------------------------------------------------------- 630s Pair | 3.9129 | 3.9129 | 3.9129 | 0.0 | 82.05 630s Neigh | 0.010086 | 0.010086 | 0.010086 | 0.0 | 0.21 630s Comm | 0.096368 | 0.096368 | 0.096368 | 0.0 | 2.02 630s Output | 0.0010382 | 0.0010382 | 0.0010382 | 0.0 | 0.02 630s Modify | 0.66859 | 0.66859 | 0.66859 | 0.0 | 14.02 630s Other | | 0.08019 | | | 1.68 630s 630s Nlocal: 1000 ave 1000 max 1000 min 630s Histogram: 1 0 0 0 0 0 0 0 0 0 630s Nghost: 1724 ave 1724 max 1724 min 630s Histogram: 1 0 0 0 0 0 0 0 0 0 630s Neighs: 21000 ave 21000 max 21000 min 630s Histogram: 1 0 0 0 0 0 0 0 0 0 630s 630s Total # of neighbors = 21000 630s Ave neighs/atom = 21 630s Neighbor list builds = 11 630s Dangerous builds = 0 630s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 630s using 1 OpenMP thread(s) per MPI task 630s Reading restart file ... 630s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 630s restoring atom style atomic from restart 630s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 630s 1 by 1 by 1 MPI processor grid 630s restoring pair style lj/cubic from restart 630s 1000 atoms 630s read_restart CPU = 0.000 seconds 630s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 630s Neighbor list info ... 630s update: every = 1 steps, delay = 0 steps, check = yes 630s max neighbors/atom: 2000, page size: 100000 630s master list distance cutoff = 1.7475372 630s ghost atom cutoff = 1.7475372 630s binsize = 0.87376862, bins = 8 12 12 630s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 630s (1) pair lj/cubic, perpetual 630s attributes: half, newton on 630s pair build: half/bin/atomonly/newton 630s stencil: half/bin/3d 630s bin: standard 630s Setting up Verlet run ... 630s Unit style : lj 630s Current step : 0 630s Time step : 0.001 630s Per MPI rank memory allocation (min/avg/max) = 2.811 | 2.811 | 2.811 Mbytes 630s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 630s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 630s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 631s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 631s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 632s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 632s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 633s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 633s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 634s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 635s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 635s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 635s Loop time of 4.99513 on 1 procs for 10000 steps with 1000 atoms 635s 635s Performance: 172968.418 tau/day, 2001.949 timesteps/s, 2.002 Matom-step/s 635s 98.9% CPU use with 1 MPI tasks x 1 OpenMP threads 635s 635s MPI task timing breakdown: 635s Section | min time | avg time | max time |%varavg| %total 635s --------------------------------------------------------------- 635s Pair | 4.0502 | 4.0502 | 4.0502 | 0.0 | 81.08 635s Neigh | 0.089325 | 0.089325 | 0.089325 | 0.0 | 1.79 635s Comm | 0.10004 | 0.10004 | 0.10004 | 0.0 | 2.00 635s Output | 0.0014614 | 0.0014614 | 0.0014614 | 0.0 | 0.03 635s Modify | 0.67046 | 0.67046 | 0.67046 | 0.0 | 13.42 635s Other | | 0.08368 | | | 1.68 635s 635s Nlocal: 1000 ave 1000 max 1000 min 635s Histogram: 1 0 0 0 0 0 0 0 0 0 635s Nghost: 1724 ave 1724 max 1724 min 635s Histogram: 1 0 0 0 0 0 0 0 0 0 635s Neighs: 20654 ave 20654 max 20654 min 635s Histogram: 1 0 0 0 0 0 0 0 0 0 635s 635s Total # of neighbors = 20654 635s Ave neighs/atom = 20.654 635s Neighbor list builds = 94 635s Dangerous builds = 0 635s Total wall time: 0:00:15 635s run: OK 635s autopkgtest [01:28:31]: test hugo: -----------------------] 640s autopkgtest [01:28:36]: test hugo: - - - - - - - - - - results - - - - - - - - - - 640s hugo PASS 644s autopkgtest [01:28:40]: test command1: preparing testbed 667s autopkgtest [01:29:03]: testbed dpkg architecture: armhf 669s autopkgtest [01:29:05]: testbed apt version: 2.9.33 676s autopkgtest [01:29:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 679s autopkgtest [01:29:15]: testbed release detected to be: plucky 692s autopkgtest [01:29:28]: updating testbed package index (apt update) 694s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 695s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [257 kB] 695s Get:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease [126 kB] 695s Get:4 http://ftpmaster.internal/ubuntu plucky-security InRelease [126 kB] 696s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [41.4 kB] 696s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.7 kB] 696s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [365 kB] 696s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [74.9 kB] 696s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf c-n-f Metadata [1792 B] 696s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf c-n-f Metadata [116 B] 696s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [290 kB] 697s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf c-n-f Metadata [10.5 kB] 697s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [4168 B] 697s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf c-n-f Metadata [240 B] 697s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [299 kB] 697s Get:16 http://ftpmaster.internal/ubuntu plucky/universe Sources [21.0 MB] 722s Get:17 http://ftpmaster.internal/ubuntu plucky/main Sources [1389 kB] 724s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1378 kB] 727s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf c-n-f Metadata [29.5 kB] 727s Get:20 http://ftpmaster.internal/ubuntu plucky/restricted armhf c-n-f Metadata [108 B] 727s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.3 MB] 744s Get:22 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [172 kB] 745s Fetched 41.1 MB in 51s (810 kB/s) 746s Reading package lists... 752s autopkgtest [01:30:28]: upgrading testbed (apt dist-upgrade and autopurge) 754s Reading package lists... 754s Building dependency tree... 754s Reading state information... 755s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 755s Starting 2 pkgProblemResolver with broken count: 0 755s Done 755s Entering ResolveByKeep 756s 756s Calculating upgrade... 756s The following packages will be upgraded: 756s libpng16-16t64 pinentry-curses python3-jinja2 sos strace 757s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 757s Need to get 1128 kB of archives. 757s After this operation, 23.6 kB of additional disk space will be used. 757s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpng16-16t64 armhf 1.6.47-1.1 [168 kB] 757s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf strace armhf 6.13+ds-1ubuntu1 [445 kB] 757s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf pinentry-curses armhf 1.3.1-2ubuntu3 [40.6 kB] 758s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 758s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf sos all 4.9.0-5 [365 kB] 759s Fetched 1128 kB in 2s (640 kB/s) 759s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 759s Preparing to unpack .../libpng16-16t64_1.6.47-1.1_armhf.deb ... 759s Unpacking libpng16-16t64:armhf (1.6.47-1.1) over (1.6.47-1) ... 759s Preparing to unpack .../strace_6.13+ds-1ubuntu1_armhf.deb ... 759s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 759s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_armhf.deb ... 759s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 759s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 759s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 759s Preparing to unpack .../archives/sos_4.9.0-5_all.deb ... 759s Unpacking sos (4.9.0-5) over (4.9.0-4) ... 759s Setting up sos (4.9.0-5) ... 760s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 760s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 760s Setting up strace (6.13+ds-1ubuntu1) ... 760s Setting up libpng16-16t64:armhf (1.6.47-1.1) ... 760s Processing triggers for man-db (2.13.0-1) ... 761s Processing triggers for libc-bin (2.41-1ubuntu1) ... 763s Reading package lists... 763s Building dependency tree... 763s Reading state information... 764s Starting pkgProblemResolver with broken count: 0 764s Starting 2 pkgProblemResolver with broken count: 0 764s Done 764s Solving dependencies... 765s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 767s autopkgtest [01:30:43]: rebooting testbed after setup commands that affected boot 832s Reading package lists... 832s Building dependency tree... 832s Reading state information... 832s Starting pkgProblemResolver with broken count: 0 833s Starting 2 pkgProblemResolver with broken count: 0 833s Done 833s The following NEW packages will be installed: 833s autoconf automake autotools-dev cpp cpp-14 cpp-14-arm-linux-gnueabihf 833s cpp-arm-linux-gnueabihf fontconfig-config fonts-dejavu-core 833s fonts-dejavu-mono g++ g++-14 g++-14-arm-linux-gnueabihf 833s g++-arm-linux-gnueabihf gcc gcc-14 gcc-14-arm-linux-gnueabihf 833s gcc-arm-linux-gnueabihf gfortran-14 gfortran-14-arm-linux-gnueabihf 833s hwloc-nox libaec0 libasan8 libblas3 libc-dev-bin libc6-dev libcairo2 833s libcc1-0 libcrypt-dev libdeflate0 libdouble-conversion3 libfftw3-double3 833s libfontconfig1 libfreetype6 libgbm1 libgcc-14-dev libgfortran-14-dev 833s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 833s libglx-mesa0 libglx0 libgomp1 libhdf5-310 libhdf5-hl-310 libhwloc-dev 833s libhwloc15 libisl23 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp26 833s libkim-api2 liblammps-dev liblammps0t64 liblapack3 liblerc4 libllvm19 833s libltdl-dev libltdl7 libmpc3 libmpich-dev libmpich12 libnetcdf22 libnuma-dev 833s libogg0 libopengl0 libpixman-1-0 libproj25 libpython3.13 libsharpyuv0 833s libslurm42t64 libstdc++-14-dev libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 833s libtcl8.6 libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libubsan1 libvoro++1 833s libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 833s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 833s libxcb-sync1 libxcb-xfixes0 libxft2 libxrender1 libxshmfence1 libxss1 833s libxxf86vm1 linux-libc-dev m4 mesa-libgallium mpi-default-bin 833s mpi-default-dev mpich proj-data python3-lammps rpcsvc-proto x11-common 834s 0 upgraded, 115 newly installed, 0 to remove and 0 not upgraded. 834s Need to get 155 MB of archives. 834s After this operation, 520 MB of additional disk space will be used. 834s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf m4 armhf 1.4.19-7 [238 kB] 834s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf autoconf all 2.72-3ubuntu1 [383 kB] 834s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf autotools-dev all 20220109.1 [44.9 kB] 834s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf automake all 1:1.17-3ubuntu1 [572 kB] 835s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libisl23 armhf 0.27-1 [546 kB] 835s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libmpc3 armhf 1.3.1-1build2 [47.1 kB] 835s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [9220 kB] 843s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-14 armhf 14.2.0-17ubuntu3 [1030 B] 843s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf cpp-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [5578 B] 843s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf cpp armhf 4:14.2.0-1ubuntu1 [22.4 kB] 843s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 843s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 844s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-2ubuntu1 [37.5 kB] 846s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libcc1-0 armhf 15-20250222-0ubuntu1 [38.9 kB] 846s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 15-20250222-0ubuntu1 [128 kB] 846s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf libasan8 armhf 15-20250222-0ubuntu1 [2955 kB] 846s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libubsan1 armhf 15-20250222-0ubuntu1 [1191 kB] 847s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-14-dev armhf 14.2.0-17ubuntu3 [897 kB] 848s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [18.0 MB] 860s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14 armhf 14.2.0-17ubuntu3 [506 kB] 861s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [1218 B] 861s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf gcc armhf 4:14.2.0-1ubuntu1 [5004 B] 861s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf libc-dev-bin armhf 2.41-1ubuntu1 [23.0 kB] 861s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf linux-libc-dev armhf 6.14.0-10.10 [1683 kB] 862s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libcrypt-dev armhf 1:4.4.38-1 [120 kB] 862s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 862s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libc6-dev armhf 2.41-1ubuntu1 [1396 kB] 863s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++-14-dev armhf 14.2.0-17ubuntu3 [2573 kB] 865s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [10.5 MB] 872s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf g++-14 armhf 14.2.0-17ubuntu3 [21.8 kB] 872s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf g++-arm-linux-gnueabihf armhf 4:14.2.0-1ubuntu1 [966 B] 872s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf g++ armhf 4:14.2.0-1ubuntu1 [1084 B] 872s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 15-20250222-0ubuntu1 [330 kB] 872s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran-14-dev armhf 14.2.0-17ubuntu3 [370 kB] 872s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-14-arm-linux-gnueabihf armhf 14.2.0-17ubuntu3 [9763 kB] 878s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf gfortran-14 armhf 14.2.0-17ubuntu3 [13.6 kB] 878s Get:37 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 878s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.1-2 [132 kB] 878s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 878s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-2ubuntu1 [114 kB] 878s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libpixman-1-0 armhf 0.44.0-3 [183 kB] 878s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB] 878s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B] 878s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 878s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libcairo2 armhf 1.18.2-2 [484 kB] 879s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.23-1 [38.5 kB] 879s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf libdouble-conversion3 armhf 3.3.1-1 [39.1 kB] 879s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libfftw3-double3 armhf 3.3.10-2fakesync1build1 [369 kB] 879s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libwayland-server0 armhf 1.23.1-3 [30.3 kB] 879s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libllvm19 armhf 1:19.1.7-1ubuntu2 [27.8 MB] 896s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-xcb1 armhf 2:1.8.10-2 [7902 B] 896s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-dri3-0 armhf 1.17.0-2 [7120 B] 896s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-present0 armhf 1.17.0-2 [5940 B] 896s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-randr0 armhf 1.17.0-2 [17.0 kB] 896s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-sync1 armhf 1.17.0-2 [8732 B] 896s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-xfixes0 armhf 1.17.0-2 [10.0 kB] 896s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libxshmfence1 armhf 1.3-1build5 [4464 B] 896s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf mesa-libgallium armhf 25.0.1-2ubuntu1 [8255 kB] 901s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libgbm1 armhf 25.0.1-2ubuntu1 [29.1 kB] 901s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libvulkan1 armhf 1.4.304.0-1 [127 kB] 902s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1-mesa-dri armhf 25.0.1-2ubuntu1 [31.9 kB] 902s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libglvnd0 armhf 1.7.0-1build1 [83.7 kB] 902s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libxcb-glx0 armhf 1.17.0-2 [22.6 kB] 902s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libxxf86vm1 armhf 1:1.1.4-1build4 [8068 B] 902s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf libglx-mesa0 armhf 25.0.1-2ubuntu1 [120 kB] 902s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf libglx0 armhf 1.7.0-1build1 [39.3 kB] 902s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf libgl1 armhf 1.7.0-1build1 [105 kB] 902s Get:68 http://ftpmaster.internal/ubuntu plucky/universe armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2build1 [37.7 kB] 902s Get:69 http://ftpmaster.internal/ubuntu plucky/universe armhf libglew2.2 armhf 2.2.0-4build1 [197 kB] 902s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 902s Get:71 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-310 armhf 1.14.5+repack-3 [1410 kB] 903s Get:72 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-310 armhf 1.14.5+repack-3 [58.8 kB] 903s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf libhwloc15 armhf 2.12.0-1 [147 kB] 903s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 903s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 903s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libjsoncpp26 armhf 1.9.6-3 [75.5 kB] 903s Get:77 http://ftpmaster.internal/ubuntu plucky/universe armhf libkim-api2 armhf 2.3.0-1ubuntu1 [566 kB] 904s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.1-2 [2091 kB] 905s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf libmpich12 armhf 4.2.1-5 [1574 kB] 906s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf libnetcdf22 armhf 1:4.9.3-1 [459 kB] 907s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13 armhf 3.13.2-2 [2079 kB] 909s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [94.8 kB] 909s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libogg0 armhf 1.3.5-3build1 [20.5 kB] 909s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libopengl0 armhf 1.7.0-1build1 [36.2 kB] 909s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf proj-data all 9.5.1-1 [7924 kB] 914s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 914s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 914s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.5.0-0.1 [16.4 kB] 914s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.5.0-0.1 [188 kB] 914s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 915s Get:91 http://ftpmaster.internal/ubuntu plucky/universe armhf libproj25 armhf 9.5.1-1 [1331 kB] 915s Get:92 http://ftpmaster.internal/ubuntu plucky/universe armhf libtbbbind-2-5 armhf 2022.0.0-2 [13.8 kB] 915s Get:93 http://ftpmaster.internal/ubuntu plucky/universe armhf libtbbmalloc2 armhf 2022.0.0-2 [47.0 kB] 916s Get:94 http://ftpmaster.internal/ubuntu plucky/universe armhf libtbb12 armhf 2022.0.0-2 [80.8 kB] 916s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [909 kB] 916s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf libtheoradec1 armhf 1.2.0~alpha1+dfsg-5 [45.7 kB] 916s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf libtheoraenc1 armhf 1.2.0~alpha1+dfsg-5 [89.3 kB] 916s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 916s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 916s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 916s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.16-1 [686 kB] 917s Get:102 http://ftpmaster.internal/ubuntu plucky/universe armhf libvtk9.3 armhf 9.3.0+dfsg1-4ubuntu1 [21.9 MB] 931s Get:103 http://ftpmaster.internal/ubuntu plucky/universe armhf liblammps0t64 armhf 20240207+dfsg-3build3 [6801 kB] 935s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf libnuma-dev armhf 2.0.18-1build1 [35.0 kB] 935s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libltdl7 armhf 2.5.4-4 [39.8 kB] 935s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libltdl-dev armhf 2.5.4-4 [169 kB] 935s Get:107 http://ftpmaster.internal/ubuntu plucky/universe armhf libhwloc-dev armhf 2.12.0-1 [247 kB] 935s Get:108 http://ftpmaster.internal/ubuntu plucky/universe armhf hwloc-nox armhf 2.12.0-1 [213 kB] 935s Get:109 http://ftpmaster.internal/ubuntu plucky/universe armhf libslurm42t64 armhf 24.11.1-1 [769 kB] 936s Get:110 http://ftpmaster.internal/ubuntu plucky/universe armhf mpich armhf 4.2.1-5 [214 kB] 936s Get:111 http://ftpmaster.internal/ubuntu plucky/universe armhf libmpich-dev armhf 4.2.1-5 [2459 kB] 937s Get:112 http://ftpmaster.internal/ubuntu plucky/universe armhf mpi-default-dev armhf 1.18 [3322 B] 937s Get:113 http://ftpmaster.internal/ubuntu plucky/universe armhf liblammps-dev armhf 20240207+dfsg-3build3 [112 kB] 937s Get:114 http://ftpmaster.internal/ubuntu plucky/universe armhf mpi-default-bin armhf 1.18 [2504 B] 937s Get:115 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lammps armhf 20240207+dfsg-3build3 [70.5 kB] 938s Fetched 155 MB in 1min 44s (1494 kB/s) 938s Selecting previously unselected package m4. 938s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64655 files and directories currently installed.) 938s Preparing to unpack .../000-m4_1.4.19-7_armhf.deb ... 938s Unpacking m4 (1.4.19-7) ... 938s Selecting previously unselected package autoconf. 938s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 938s Unpacking autoconf (2.72-3ubuntu1) ... 938s Selecting previously unselected package autotools-dev. 938s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 938s Unpacking autotools-dev (20220109.1) ... 938s Selecting previously unselected package automake. 938s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 938s Unpacking automake (1:1.17-3ubuntu1) ... 938s Selecting previously unselected package libisl23:armhf. 938s Preparing to unpack .../004-libisl23_0.27-1_armhf.deb ... 938s Unpacking libisl23:armhf (0.27-1) ... 938s Selecting previously unselected package libmpc3:armhf. 938s Preparing to unpack .../005-libmpc3_1.3.1-1build2_armhf.deb ... 938s Unpacking libmpc3:armhf (1.3.1-1build2) ... 938s Selecting previously unselected package cpp-14-arm-linux-gnueabihf. 938s Preparing to unpack .../006-cpp-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 938s Unpacking cpp-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 938s Selecting previously unselected package cpp-14. 938s Preparing to unpack .../007-cpp-14_14.2.0-17ubuntu3_armhf.deb ... 938s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 939s Selecting previously unselected package cpp-arm-linux-gnueabihf. 939s Preparing to unpack .../008-cpp-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 939s Unpacking cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 939s Selecting previously unselected package cpp. 939s Preparing to unpack .../009-cpp_4%3a14.2.0-1ubuntu1_armhf.deb ... 939s Unpacking cpp (4:14.2.0-1ubuntu1) ... 939s Selecting previously unselected package fonts-dejavu-mono. 939s Preparing to unpack .../010-fonts-dejavu-mono_2.37-8_all.deb ... 939s Unpacking fonts-dejavu-mono (2.37-8) ... 939s Selecting previously unselected package fonts-dejavu-core. 939s Preparing to unpack .../011-fonts-dejavu-core_2.37-8_all.deb ... 939s Unpacking fonts-dejavu-core (2.37-8) ... 939s Selecting previously unselected package fontconfig-config. 939s Preparing to unpack .../012-fontconfig-config_2.15.0-2ubuntu1_armhf.deb ... 939s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 939s Selecting previously unselected package libcc1-0:armhf. 939s Preparing to unpack .../013-libcc1-0_15-20250222-0ubuntu1_armhf.deb ... 939s Unpacking libcc1-0:armhf (15-20250222-0ubuntu1) ... 939s Selecting previously unselected package libgomp1:armhf. 939s Preparing to unpack .../014-libgomp1_15-20250222-0ubuntu1_armhf.deb ... 939s Unpacking libgomp1:armhf (15-20250222-0ubuntu1) ... 939s Selecting previously unselected package libasan8:armhf. 939s Preparing to unpack .../015-libasan8_15-20250222-0ubuntu1_armhf.deb ... 939s Unpacking libasan8:armhf (15-20250222-0ubuntu1) ... 939s Selecting previously unselected package libubsan1:armhf. 939s Preparing to unpack .../016-libubsan1_15-20250222-0ubuntu1_armhf.deb ... 939s Unpacking libubsan1:armhf (15-20250222-0ubuntu1) ... 939s Selecting previously unselected package libgcc-14-dev:armhf. 939s Preparing to unpack .../017-libgcc-14-dev_14.2.0-17ubuntu3_armhf.deb ... 939s Unpacking libgcc-14-dev:armhf (14.2.0-17ubuntu3) ... 940s Selecting previously unselected package gcc-14-arm-linux-gnueabihf. 940s Preparing to unpack .../018-gcc-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 940s Unpacking gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 940s Selecting previously unselected package gcc-14. 940s Preparing to unpack .../019-gcc-14_14.2.0-17ubuntu3_armhf.deb ... 940s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 940s Selecting previously unselected package gcc-arm-linux-gnueabihf. 940s Preparing to unpack .../020-gcc-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 940s Unpacking gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 940s Selecting previously unselected package gcc. 940s Preparing to unpack .../021-gcc_4%3a14.2.0-1ubuntu1_armhf.deb ... 940s Unpacking gcc (4:14.2.0-1ubuntu1) ... 940s Selecting previously unselected package libc-dev-bin. 940s Preparing to unpack .../022-libc-dev-bin_2.41-1ubuntu1_armhf.deb ... 940s Unpacking libc-dev-bin (2.41-1ubuntu1) ... 940s Selecting previously unselected package linux-libc-dev:armhf. 940s Preparing to unpack .../023-linux-libc-dev_6.14.0-10.10_armhf.deb ... 940s Unpacking linux-libc-dev:armhf (6.14.0-10.10) ... 940s Selecting previously unselected package libcrypt-dev:armhf. 940s Preparing to unpack .../024-libcrypt-dev_1%3a4.4.38-1_armhf.deb ... 940s Unpacking libcrypt-dev:armhf (1:4.4.38-1) ... 940s Selecting previously unselected package rpcsvc-proto. 940s Preparing to unpack .../025-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 940s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 940s Selecting previously unselected package libc6-dev:armhf. 940s Preparing to unpack .../026-libc6-dev_2.41-1ubuntu1_armhf.deb ... 940s Unpacking libc6-dev:armhf (2.41-1ubuntu1) ... 941s Selecting previously unselected package libstdc++-14-dev:armhf. 941s Preparing to unpack .../027-libstdc++-14-dev_14.2.0-17ubuntu3_armhf.deb ... 941s Unpacking libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 941s Selecting previously unselected package g++-14-arm-linux-gnueabihf. 941s Preparing to unpack .../028-g++-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 941s Unpacking g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 941s Selecting previously unselected package g++-14. 941s Preparing to unpack .../029-g++-14_14.2.0-17ubuntu3_armhf.deb ... 941s Unpacking g++-14 (14.2.0-17ubuntu3) ... 941s Selecting previously unselected package g++-arm-linux-gnueabihf. 941s Preparing to unpack .../030-g++-arm-linux-gnueabihf_4%3a14.2.0-1ubuntu1_armhf.deb ... 941s Unpacking g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 941s Selecting previously unselected package g++. 941s Preparing to unpack .../031-g++_4%3a14.2.0-1ubuntu1_armhf.deb ... 941s Unpacking g++ (4:14.2.0-1ubuntu1) ... 941s Selecting previously unselected package libgfortran5:armhf. 941s Preparing to unpack .../032-libgfortran5_15-20250222-0ubuntu1_armhf.deb ... 941s Unpacking libgfortran5:armhf (15-20250222-0ubuntu1) ... 941s Selecting previously unselected package libgfortran-14-dev:armhf. 941s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-17ubuntu3_armhf.deb ... 941s Unpacking libgfortran-14-dev:armhf (14.2.0-17ubuntu3) ... 941s Selecting previously unselected package gfortran-14-arm-linux-gnueabihf. 941s Preparing to unpack .../034-gfortran-14-arm-linux-gnueabihf_14.2.0-17ubuntu3_armhf.deb ... 941s Unpacking gfortran-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 941s Selecting previously unselected package gfortran-14. 941s Preparing to unpack .../035-gfortran-14_14.2.0-17ubuntu3_armhf.deb ... 941s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 941s Selecting previously unselected package libaec0:armhf. 941s Preparing to unpack .../036-libaec0_1.1.3-1_armhf.deb ... 941s Unpacking libaec0:armhf (1.1.3-1) ... 941s Selecting previously unselected package libblas3:armhf. 941s Preparing to unpack .../037-libblas3_3.12.1-2_armhf.deb ... 941s Unpacking libblas3:armhf (3.12.1-2) ... 941s Selecting previously unselected package libfreetype6:armhf. 941s Preparing to unpack .../038-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 941s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 942s Selecting previously unselected package libfontconfig1:armhf. 942s Preparing to unpack .../039-libfontconfig1_2.15.0-2ubuntu1_armhf.deb ... 942s Unpacking libfontconfig1:armhf (2.15.0-2ubuntu1) ... 942s Selecting previously unselected package libpixman-1-0:armhf. 942s Preparing to unpack .../040-libpixman-1-0_0.44.0-3_armhf.deb ... 942s Unpacking libpixman-1-0:armhf (0.44.0-3) ... 942s Selecting previously unselected package libxcb-render0:armhf. 942s Preparing to unpack .../041-libxcb-render0_1.17.0-2_armhf.deb ... 942s Unpacking libxcb-render0:armhf (1.17.0-2) ... 942s Selecting previously unselected package libxcb-shm0:armhf. 942s Preparing to unpack .../042-libxcb-shm0_1.17.0-2_armhf.deb ... 942s Unpacking libxcb-shm0:armhf (1.17.0-2) ... 942s Selecting previously unselected package libxrender1:armhf. 942s Preparing to unpack .../043-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 942s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 942s Selecting previously unselected package libcairo2:armhf. 942s Preparing to unpack .../044-libcairo2_1.18.2-2_armhf.deb ... 942s Unpacking libcairo2:armhf (1.18.2-2) ... 942s Selecting previously unselected package libdeflate0:armhf. 942s Preparing to unpack .../045-libdeflate0_1.23-1_armhf.deb ... 942s Unpacking libdeflate0:armhf (1.23-1) ... 942s Selecting previously unselected package libdouble-conversion3:armhf. 942s Preparing to unpack .../046-libdouble-conversion3_3.3.1-1_armhf.deb ... 942s Unpacking libdouble-conversion3:armhf (3.3.1-1) ... 942s Selecting previously unselected package libfftw3-double3:armhf. 942s Preparing to unpack .../047-libfftw3-double3_3.3.10-2fakesync1build1_armhf.deb ... 942s Unpacking libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 942s Selecting previously unselected package libwayland-server0:armhf. 942s Preparing to unpack .../048-libwayland-server0_1.23.1-3_armhf.deb ... 942s Unpacking libwayland-server0:armhf (1.23.1-3) ... 942s Selecting previously unselected package libllvm19:armhf. 942s Preparing to unpack .../049-libllvm19_1%3a19.1.7-1ubuntu2_armhf.deb ... 942s Unpacking libllvm19:armhf (1:19.1.7-1ubuntu2) ... 943s Selecting previously unselected package libx11-xcb1:armhf. 943s Preparing to unpack .../050-libx11-xcb1_2%3a1.8.10-2_armhf.deb ... 943s Unpacking libx11-xcb1:armhf (2:1.8.10-2) ... 943s Selecting previously unselected package libxcb-dri3-0:armhf. 943s Preparing to unpack .../051-libxcb-dri3-0_1.17.0-2_armhf.deb ... 943s Unpacking libxcb-dri3-0:armhf (1.17.0-2) ... 943s Selecting previously unselected package libxcb-present0:armhf. 943s Preparing to unpack .../052-libxcb-present0_1.17.0-2_armhf.deb ... 943s Unpacking libxcb-present0:armhf (1.17.0-2) ... 943s Selecting previously unselected package libxcb-randr0:armhf. 943s Preparing to unpack .../053-libxcb-randr0_1.17.0-2_armhf.deb ... 943s Unpacking libxcb-randr0:armhf (1.17.0-2) ... 943s Selecting previously unselected package libxcb-sync1:armhf. 943s Preparing to unpack .../054-libxcb-sync1_1.17.0-2_armhf.deb ... 943s Unpacking libxcb-sync1:armhf (1.17.0-2) ... 943s Selecting previously unselected package libxcb-xfixes0:armhf. 943s Preparing to unpack .../055-libxcb-xfixes0_1.17.0-2_armhf.deb ... 943s Unpacking libxcb-xfixes0:armhf (1.17.0-2) ... 943s Selecting previously unselected package libxshmfence1:armhf. 943s Preparing to unpack .../056-libxshmfence1_1.3-1build5_armhf.deb ... 943s Unpacking libxshmfence1:armhf (1.3-1build5) ... 943s Selecting previously unselected package mesa-libgallium:armhf. 943s Preparing to unpack .../057-mesa-libgallium_25.0.1-2ubuntu1_armhf.deb ... 943s Unpacking mesa-libgallium:armhf (25.0.1-2ubuntu1) ... 943s Selecting previously unselected package libgbm1:armhf. 943s Preparing to unpack .../058-libgbm1_25.0.1-2ubuntu1_armhf.deb ... 943s Unpacking libgbm1:armhf (25.0.1-2ubuntu1) ... 943s Selecting previously unselected package libvulkan1:armhf. 943s Preparing to unpack .../059-libvulkan1_1.4.304.0-1_armhf.deb ... 943s Unpacking libvulkan1:armhf (1.4.304.0-1) ... 943s Selecting previously unselected package libgl1-mesa-dri:armhf. 943s Preparing to unpack .../060-libgl1-mesa-dri_25.0.1-2ubuntu1_armhf.deb ... 943s Unpacking libgl1-mesa-dri:armhf (25.0.1-2ubuntu1) ... 943s Selecting previously unselected package libglvnd0:armhf. 943s Preparing to unpack .../061-libglvnd0_1.7.0-1build1_armhf.deb ... 943s Unpacking libglvnd0:armhf (1.7.0-1build1) ... 943s Selecting previously unselected package libxcb-glx0:armhf. 943s Preparing to unpack .../062-libxcb-glx0_1.17.0-2_armhf.deb ... 943s Unpacking libxcb-glx0:armhf (1.17.0-2) ... 943s Selecting previously unselected package libxxf86vm1:armhf. 943s Preparing to unpack .../063-libxxf86vm1_1%3a1.1.4-1build4_armhf.deb ... 943s Unpacking libxxf86vm1:armhf (1:1.1.4-1build4) ... 943s Selecting previously unselected package libglx-mesa0:armhf. 943s Preparing to unpack .../064-libglx-mesa0_25.0.1-2ubuntu1_armhf.deb ... 943s Unpacking libglx-mesa0:armhf (25.0.1-2ubuntu1) ... 943s Selecting previously unselected package libglx0:armhf. 943s Preparing to unpack .../065-libglx0_1.7.0-1build1_armhf.deb ... 943s Unpacking libglx0:armhf (1.7.0-1build1) ... 943s Selecting previously unselected package libgl1:armhf. 943s Preparing to unpack .../066-libgl1_1.7.0-1build1_armhf.deb ... 943s Unpacking libgl1:armhf (1.7.0-1build1) ... 943s Selecting previously unselected package libgl2ps1.4. 943s Preparing to unpack .../067-libgl2ps1.4_1.4.2+dfsg1-2build1_armhf.deb ... 943s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 944s Selecting previously unselected package libglew2.2:armhf. 944s Preparing to unpack .../068-libglew2.2_2.2.0-4build1_armhf.deb ... 944s Unpacking libglew2.2:armhf (2.2.0-4build1) ... 944s Selecting previously unselected package libsz2:armhf. 944s Preparing to unpack .../069-libsz2_1.1.3-1_armhf.deb ... 944s Unpacking libsz2:armhf (1.1.3-1) ... 944s Selecting previously unselected package libhdf5-310:armhf. 944s Preparing to unpack .../070-libhdf5-310_1.14.5+repack-3_armhf.deb ... 944s Unpacking libhdf5-310:armhf (1.14.5+repack-3) ... 944s Selecting previously unselected package libhdf5-hl-310:armhf. 944s Preparing to unpack .../071-libhdf5-hl-310_1.14.5+repack-3_armhf.deb ... 944s Unpacking libhdf5-hl-310:armhf (1.14.5+repack-3) ... 944s Selecting previously unselected package libhwloc15:armhf. 944s Preparing to unpack .../072-libhwloc15_2.12.0-1_armhf.deb ... 944s Unpacking libhwloc15:armhf (2.12.0-1) ... 944s Selecting previously unselected package libjpeg-turbo8:armhf. 944s Preparing to unpack .../073-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 944s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 944s Selecting previously unselected package libjpeg8:armhf. 944s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_armhf.deb ... 944s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 944s Selecting previously unselected package libjsoncpp26:armhf. 944s Preparing to unpack .../075-libjsoncpp26_1.9.6-3_armhf.deb ... 944s Unpacking libjsoncpp26:armhf (1.9.6-3) ... 944s Selecting previously unselected package libkim-api2:armhf. 944s Preparing to unpack .../076-libkim-api2_2.3.0-1ubuntu1_armhf.deb ... 944s Unpacking libkim-api2:armhf (2.3.0-1ubuntu1) ... 944s Selecting previously unselected package liblapack3:armhf. 944s Preparing to unpack .../077-liblapack3_3.12.1-2_armhf.deb ... 944s Unpacking liblapack3:armhf (3.12.1-2) ... 944s Selecting previously unselected package libmpich12:armhf. 944s Preparing to unpack .../078-libmpich12_4.2.1-5_armhf.deb ... 944s Unpacking libmpich12:armhf (4.2.1-5) ... 944s Selecting previously unselected package libnetcdf22:armhf. 944s Preparing to unpack .../079-libnetcdf22_1%3a4.9.3-1_armhf.deb ... 944s Unpacking libnetcdf22:armhf (1:4.9.3-1) ... 944s Selecting previously unselected package libpython3.13:armhf. 944s Preparing to unpack .../080-libpython3.13_3.13.2-2_armhf.deb ... 944s Unpacking libpython3.13:armhf (3.13.2-2) ... 944s Selecting previously unselected package libvoro++1. 944s Preparing to unpack .../081-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_armhf.deb ... 944s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 944s Selecting previously unselected package libogg0:armhf. 944s Preparing to unpack .../082-libogg0_1.3.5-3build1_armhf.deb ... 944s Unpacking libogg0:armhf (1.3.5-3build1) ... 944s Selecting previously unselected package libopengl0:armhf. 944s Preparing to unpack .../083-libopengl0_1.7.0-1build1_armhf.deb ... 944s Unpacking libopengl0:armhf (1.7.0-1build1) ... 944s Selecting previously unselected package proj-data. 944s Preparing to unpack .../084-proj-data_9.5.1-1_all.deb ... 944s Unpacking proj-data (9.5.1-1) ... 944s Selecting previously unselected package libjbig0:armhf. 944s Preparing to unpack .../085-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 944s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 944s Selecting previously unselected package liblerc4:armhf. 944s Preparing to unpack .../086-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 944s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 944s Selecting previously unselected package libsharpyuv0:armhf. 945s Preparing to unpack .../087-libsharpyuv0_1.5.0-0.1_armhf.deb ... 945s Unpacking libsharpyuv0:armhf (1.5.0-0.1) ... 945s Selecting previously unselected package libwebp7:armhf. 945s Preparing to unpack .../088-libwebp7_1.5.0-0.1_armhf.deb ... 945s Unpacking libwebp7:armhf (1.5.0-0.1) ... 945s Selecting previously unselected package libtiff6:armhf. 945s Preparing to unpack .../089-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 945s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 945s Selecting previously unselected package libproj25:armhf. 945s Preparing to unpack .../090-libproj25_9.5.1-1_armhf.deb ... 945s Unpacking libproj25:armhf (9.5.1-1) ... 945s Selecting previously unselected package libtbbbind-2-5:armhf. 945s Preparing to unpack .../091-libtbbbind-2-5_2022.0.0-2_armhf.deb ... 945s Unpacking libtbbbind-2-5:armhf (2022.0.0-2) ... 945s Selecting previously unselected package libtbbmalloc2:armhf. 945s Preparing to unpack .../092-libtbbmalloc2_2022.0.0-2_armhf.deb ... 945s Unpacking libtbbmalloc2:armhf (2022.0.0-2) ... 945s Selecting previously unselected package libtbb12:armhf. 945s Preparing to unpack .../093-libtbb12_2022.0.0-2_armhf.deb ... 945s Unpacking libtbb12:armhf (2022.0.0-2) ... 945s Selecting previously unselected package libtcl8.6:armhf. 945s Preparing to unpack .../094-libtcl8.6_8.6.16+dfsg-1_armhf.deb ... 945s Unpacking libtcl8.6:armhf (8.6.16+dfsg-1) ... 945s Selecting previously unselected package libtheoradec1:armhf. 945s Preparing to unpack .../095-libtheoradec1_1.2.0~alpha1+dfsg-5_armhf.deb ... 945s Unpacking libtheoradec1:armhf (1.2.0~alpha1+dfsg-5) ... 945s Selecting previously unselected package libtheoraenc1:armhf. 945s Preparing to unpack .../096-libtheoraenc1_1.2.0~alpha1+dfsg-5_armhf.deb ... 945s Unpacking libtheoraenc1:armhf (1.2.0~alpha1+dfsg-5) ... 945s Selecting previously unselected package libxft2:armhf. 945s Preparing to unpack .../097-libxft2_2.3.6-1build1_armhf.deb ... 945s Unpacking libxft2:armhf (2.3.6-1build1) ... 945s Selecting previously unselected package x11-common. 945s Preparing to unpack .../098-x11-common_1%3a7.7+23ubuntu3_all.deb ... 945s Unpacking x11-common (1:7.7+23ubuntu3) ... 945s Selecting previously unselected package libxss1:armhf. 945s Preparing to unpack .../099-libxss1_1%3a1.2.3-1build3_armhf.deb ... 945s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 945s Selecting previously unselected package libtk8.6:armhf. 945s Preparing to unpack .../100-libtk8.6_8.6.16-1_armhf.deb ... 945s Unpacking libtk8.6:armhf (8.6.16-1) ... 945s Selecting previously unselected package libvtk9.3:armhf. 945s Preparing to unpack .../101-libvtk9.3_9.3.0+dfsg1-4ubuntu1_armhf.deb ... 945s Unpacking libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 946s Selecting previously unselected package liblammps0t64:armhf. 946s Preparing to unpack .../102-liblammps0t64_20240207+dfsg-3build3_armhf.deb ... 946s Unpacking liblammps0t64:armhf (20240207+dfsg-3build3) ... 946s Selecting previously unselected package libnuma-dev:armhf. 946s Preparing to unpack .../103-libnuma-dev_2.0.18-1build1_armhf.deb ... 946s Unpacking libnuma-dev:armhf (2.0.18-1build1) ... 946s Selecting previously unselected package libltdl7:armhf. 946s Preparing to unpack .../104-libltdl7_2.5.4-4_armhf.deb ... 946s Unpacking libltdl7:armhf (2.5.4-4) ... 946s Selecting previously unselected package libltdl-dev:armhf. 946s Preparing to unpack .../105-libltdl-dev_2.5.4-4_armhf.deb ... 946s Unpacking libltdl-dev:armhf (2.5.4-4) ... 946s Selecting previously unselected package libhwloc-dev:armhf. 946s Preparing to unpack .../106-libhwloc-dev_2.12.0-1_armhf.deb ... 946s Unpacking libhwloc-dev:armhf (2.12.0-1) ... 946s Selecting previously unselected package hwloc-nox. 946s Preparing to unpack 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package mpi-default-bin. 947s Preparing to unpack .../113-mpi-default-bin_1.18_armhf.deb ... 947s Unpacking mpi-default-bin (1.18) ... 947s Selecting previously unselected package python3-lammps. 947s Preparing to unpack .../114-python3-lammps_20240207+dfsg-3build3_armhf.deb ... 947s Unpacking python3-lammps (20240207+dfsg-3build3) ... 947s Setting up libpython3.13:armhf (3.13.2-2) ... 947s Setting up libxcb-dri3-0:armhf (1.17.0-2) ... 947s Setting up libtbbmalloc2:armhf (2022.0.0-2) ... 947s Setting up libpixman-1-0:armhf (0.44.0-3) ... 947s Setting up libllvm19:armhf (1:19.1.7-1ubuntu2) ... 947s Setting up libsharpyuv0:armhf (1.5.0-0.1) ... 947s Setting up libwayland-server0:armhf (1.23.1-3) ... 947s Setting up libx11-xcb1:armhf (2:1.8.10-2) ... 947s Setting up libdouble-conversion3:armhf (3.3.1-1) ... 947s Setting up libxcb-xfixes0:armhf (1.17.0-2) ... 947s Setting up libogg0:armhf (1.3.5-3build1) ... 947s Setting up liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 947s Setting up proj-data (9.5.1-1) ... 947s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ... 947s Setting up libxcb-render0:armhf (1.17.0-2) ... 947s Setting up libglvnd0:armhf (1.7.0-1build1) ... 947s Setting up libxcb-glx0:armhf (1.17.0-2) ... 947s Setting up x11-common (1:7.7+23ubuntu3) ... 947s Setting up libdeflate0:armhf (1.23-1) ... 947s Setting up linux-libc-dev:armhf (6.14.0-10.10) ... 947s Setting up m4 (1.4.19-7) ... 947s Setting up libxcb-shm0:armhf (1.17.0-2) ... 947s Setting up libgomp1:armhf (15-20250222-0ubuntu1) ... 947s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ... 947s Setting up libaec0:armhf (1.1.3-1) ... 947s Setting up libopengl0:armhf (1.7.0-1build1) ... 947s Setting up libxxf86vm1:armhf (1:1.1.4-1build4) ... 947s Setting up libxcb-present0:armhf (1.17.0-2) ... 947s Setting up autotools-dev (20220109.1) ... 947s Setting up libblas3:armhf (3.12.1-2) ... 947s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 947s Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... 947s Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... 947s Setting up libxcb-sync1:armhf (1.17.0-2) ... 947s Setting up libjsoncpp26:armhf (1.9.6-3) ... 947s Setting up libslurm42t64 (24.11.1-1) ... 947s Setting up fonts-dejavu-mono (2.37-8) ... 947s Setting up libhwloc15:armhf (2.12.0-1) ... 947s Setting up libmpc3:armhf (1.3.1-1build2) ... 947s Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ... 947s Setting up fonts-dejavu-core (2.37-8) ... 947s Setting up libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 947s Setting up libltdl7:armhf (2.5.4-4) ... 947s Setting up libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 947s Setting up libgfortran5:armhf (15-20250222-0ubuntu1) ... 947s Setting up libvulkan1:armhf (1.4.304.0-1) ... 947s Setting up autoconf (2.72-3ubuntu1) ... 947s Setting up libwebp7:armhf (1.5.0-0.1) ... 947s Setting up libubsan1:armhf 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Setting up mesa-libgallium:armhf (25.0.1-2ubuntu1) ... 947s Setting up liblapack3:armhf (3.12.1-2) ... 947s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 947s Setting up libgbm1:armhf (25.0.1-2ubuntu1) ... 947s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 947s Setting up libgl1-mesa-dri:armhf (25.0.1-2ubuntu1) ... 947s Setting up hwloc-nox (2.12.0-1) ... 947s Setting up gcc-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 947s Setting up libkim-api2:armhf (2.3.0-1ubuntu1) ... 947s Setting up libtbbbind-2-5:armhf (2022.0.0-2) ... 948s Setting up libltdl-dev:armhf (2.5.4-4) ... 948s Setting up cpp-14 (14.2.0-17ubuntu3) ... 948s Setting up libhdf5-310:armhf (1.14.5+repack-3) ... 948s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 948s Setting up libc6-dev:armhf (2.41-1ubuntu1) ... 948s Setting up libfontconfig1:armhf (2.15.0-2ubuntu1) ... 948s Setting up libstdc++-14-dev:armhf (14.2.0-17ubuntu3) ... 948s Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 948s Setting up gfortran-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 948s Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 948s Setting up libhdf5-hl-310:armhf (1.14.5+repack-3) ... 948s Setting up g++-14-arm-linux-gnueabihf (14.2.0-17ubuntu3) ... 948s Setting up libxft2:armhf (2.3.6-1build1) ... 948s Setting up libglx-mesa0:armhf (25.0.1-2ubuntu1) ... 948s Setting up libglx0:armhf (1.7.0-1build1) ... 948s Setting up libproj25:armhf (9.5.1-1) ... 948s Setting up mpich (4.2.1-5) ... 948s update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode 948s update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode 948s Setting up libtk8.6:armhf (8.6.16-1) ... 948s Setting up libnetcdf22:armhf (1:4.9.3-1) ... 948s Setting up mpi-default-bin (1.18) ... 948s Setting up libtbb12:armhf (2022.0.0-2) ... 948s Setting up libcairo2:armhf (1.18.2-2) ... 948s Setting up gcc-14 (14.2.0-17ubuntu3) ... 948s Setting up libnuma-dev:armhf (2.0.18-1build1) ... 948s Setting up libgl1:armhf (1.7.0-1build1) ... 948s Setting up libtheoradec1:armhf (1.2.0~alpha1+dfsg-5) ... 948s Setting up libglew2.2:armhf (2.2.0-4build1) ... 948s Setting up cpp (4:14.2.0-1ubuntu1) ... 948s Setting up libhwloc-dev:armhf (2.12.0-1) ... 948s Setting up g++-14 (14.2.0-17ubuntu3) ... 948s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 948s Setting up g++-arm-linux-gnueabihf (4:14.2.0-1ubuntu1) ... 948s Setting up gcc (4:14.2.0-1ubuntu1) ... 948s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 948s Setting up libtheoraenc1:armhf (1.2.0~alpha1+dfsg-5) ... 948s Setting up libvtk9.3:armhf (9.3.0+dfsg1-4ubuntu1) ... 948s Setting up g++ (4:14.2.0-1ubuntu1) ... 948s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 948s Setting up liblammps0t64:armhf (20240207+dfsg-3build3) ... 948s Setting up libmpich-dev:armhf (4.2.1-5) ... 948s update-alternatives: using /usr/include/arm-linux-gnueabihf/mpich to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode 948s Setting up mpi-default-dev (1.18) ... 948s Setting up liblammps-dev (20240207+dfsg-3build3) ... 948s Setting up python3-lammps (20240207+dfsg-3build3) ... 948s Processing triggers for man-db (2.13.0-1) ... 949s Processing triggers for install-info (7.1.1-1) ... 949s Processing triggers for libc-bin (2.41-1ubuntu1) ... 1106s autopkgtest [01:36:22]: test command1: cd python/examples; python3 demo.py 1106s autopkgtest [01:36:22]: test command1: [----------------------- 1108s LAMMPS (7 Feb 2024 - Update 1) 1108s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1108s using 1 OpenMP thread(s) per MPI task 1108s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 1108s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 1108s 1 by 1 by 1 MPI processor grid 1108s Created 4000 atoms 1108s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 1108s create_atoms CPU = 0.002 seconds 1108s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1108s Neighbor list info ... 1108s update: every = 20 steps, delay = 0 steps, check = no 1108s max neighbors/atom: 2000, page size: 100000 1108s master list distance cutoff = 2.8 1108s ghost atom cutoff = 2.8 1108s binsize = 1.4, bins = 12 12 12 1108s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1108s (1) pair lj/cut, perpetual 1108s attributes: half, newton on 1108s pair build: half/bin/atomonly/newton 1108s stencil: half/bin/3d 1108s bin: standard 1108s Setting up Verlet run ... 1108s Unit style : lj 1108s Current step : 0 1108s Time step : 0.005 1108s Per MPI rank memory allocation (min/avg/max) = 3.513 | 3.513 | 3.513 Mbytes 1108s Step Temp E_pair E_mol TotEng Press 1108s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 1109s 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 1109s Loop time of 0.259054 on 1 procs for 100 steps with 4000 atoms 1109s 1109s Performance: 166760.634 tau/day, 386.020 timesteps/s, 1.544 Matom-step/s 1109s 98.8% CPU use with 1 MPI tasks x 1 OpenMP threads 1109s 1109s MPI task timing breakdown: 1109s Section | min time | avg time | max time |%varavg| %total 1109s --------------------------------------------------------------- 1109s Pair | 0.21741 | 0.21741 | 0.21741 | 0.0 | 83.93 1109s Neigh | 0.029526 | 0.029526 | 0.029526 | 0.0 | 11.40 1109s Comm | 0.0057828 | 0.0057828 | 0.0057828 | 0.0 | 2.23 1109s Output | 8.6241e-05 | 8.6241e-05 | 8.6241e-05 | 0.0 | 0.03 1109s Modify | 0.0042846 | 0.0042846 | 0.0042846 | 0.0 | 1.65 1109s Other | | 0.001962 | | | 0.76 1109s 1109s Nlocal: 4000 ave 4000 max 4000 min 1109s Histogram: 1 0 0 0 0 0 0 0 0 0 1109s Nghost: 5758 ave 5758 max 5758 min 1109s Histogram: 1 0 0 0 0 0 0 0 0 0 1109s Neighs: 150488 ave 150488 max 150488 min 1109s Histogram: 1 0 0 0 0 0 0 0 0 0 1109s 1109s Total # of neighbors = 150488 1109s Ave neighs/atom = 37.622 1109s Neighbor list builds = 5 1109s Dangerous builds not checked 1109s 1109s Python output: 1109s Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 1109s Temperature from compute = 0.7683848148006243 1109s Energy from equal-style variable = -5.774392400140558 1109s Velocity component from atom-style variable = -0.16696430269966717 1109s Volume from get_thermo = 4738.213693437576 1109s Natoms from get_natoms = 4000 1109s Global coords from gather_atoms = 16.651271530416228 16.79001077301678 0.19047524160173676 1109s Changed x[0][0] via scatter_atoms = 17.651271530416228 1109s Total wall time: 0:00:00 1109s autopkgtest [01:36:25]: test command1: -----------------------] 1113s command1 PASS 1113s autopkgtest [01:36:29]: test command1: - - - - - - - - - - results - - - - - - - - - - 1117s autopkgtest [01:36:33]: @@@@@@@@@@@@@@@@@@@@ summary 1117s crack PASS 1117s dipole PASS 1117s ellipse PASS 1117s flow PASS 1117s friction PASS 1117s hugo PASS 1117s command1 PASS