0s autopkgtest [09:34:49]: starting date and time: 2024-12-03 09:34:49+0000 0s autopkgtest [09:34:49]: git checkout: be626eda Fix armhf LXD image generation for plucky 0s autopkgtest [09:34:49]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zzqiy5zy/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:astropy --apt-upgrade imexam --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=astropy/7.0.0-1 -- lxd -r lxd-armhf-10.145.243.142 lxd-armhf-10.145.243.142:autopkgtest/ubuntu/plucky/armhf 57s autopkgtest [09:35:46]: testbed dpkg architecture: armhf 61s autopkgtest [09:35:50]: testbed apt version: 2.9.14ubuntu1 70s autopkgtest [09:35:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 75s autopkgtest [09:36:04]: testbed release detected to be: None 93s autopkgtest [09:36:22]: updating testbed package index (apt update) 97s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 97s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [213 kB] 97s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 97s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 97s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 97s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.1 kB] 97s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [781 kB] 97s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [65.3 kB] 97s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [119 kB] 97s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [928 B] 97s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [622 kB] 97s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [7468 B] 97s Get:13 http://ftpmaster.internal/ubuntu plucky/universe Sources [20.7 MB] 98s Get:14 http://ftpmaster.internal/ubuntu plucky/main Sources [1381 kB] 98s Get:15 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [298 kB] 98s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1353 kB] 98s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [14.9 MB] 98s Get:18 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [174 kB] 102s Fetched 40.7 MB in 5s (8032 kB/s) 103s Reading package lists... 114s autopkgtest [09:36:43]: upgrading testbed (apt dist-upgrade and autopurge) 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 120s Starting 2 pkgProblemResolver with broken count: 0 120s Done 121s Entering ResolveByKeep 121s 121s The following packages will be upgraded: 121s fwupd gcc-14-base libatomic1 libfwupd3 libgcc-s1 libstdc++6 121s python3-software-properties software-properties-common 122s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Need to get 6003 kB of archives. 122s After this operation, 1024 B of additional disk space will be used. 122s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-9ubuntu1 [7856 B] 122s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-9ubuntu1 [51.9 kB] 122s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-9ubuntu1 [713 kB] 122s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-9ubuntu1 [40.9 kB] 122s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 2.0.2-2 [5020 kB] 122s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd3 armhf 2.0.2-2 [124 kB] 122s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf software-properties-common all 0.107 [16.5 kB] 122s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf python3-software-properties all 0.107 [30.4 kB] 123s Fetched 6003 kB in 1s (7028 kB/s) 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 123s Preparing to unpack .../libatomic1_14.2.0-9ubuntu1_armhf.deb ... 123s Unpacking libatomic1:armhf (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 123s Preparing to unpack .../gcc-14-base_14.2.0-9ubuntu1_armhf.deb ... 123s Unpacking gcc-14-base:armhf (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 123s Setting up gcc-14-base:armhf (14.2.0-9ubuntu1) ... 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 123s Preparing to unpack .../libstdc++6_14.2.0-9ubuntu1_armhf.deb ... 123s Unpacking libstdc++6:armhf (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 123s Setting up libstdc++6:armhf (14.2.0-9ubuntu1) ... 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 123s Preparing to unpack .../libgcc-s1_14.2.0-9ubuntu1_armhf.deb ... 123s Unpacking libgcc-s1:armhf (14.2.0-9ubuntu1) over (14.2.0-8ubuntu1) ... 123s Setting up libgcc-s1:armhf (14.2.0-9ubuntu1) ... 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 123s Preparing to unpack .../fwupd_2.0.2-2_armhf.deb ... 123s Unpacking fwupd (2.0.2-2) over (2.0.2-1) ... 124s Preparing to unpack .../libfwupd3_2.0.2-2_armhf.deb ... 124s Unpacking libfwupd3:armhf (2.0.2-2) over (2.0.2-1) ... 124s Preparing to unpack .../software-properties-common_0.107_all.deb ... 124s Unpacking software-properties-common (0.107) over (0.105) ... 124s Preparing to unpack .../python3-software-properties_0.107_all.deb ... 124s Unpacking python3-software-properties (0.107) over (0.105) ... 124s Setting up libfwupd3:armhf (2.0.2-2) ... 124s Setting up python3-software-properties (0.107) ... 124s Setting up libatomic1:armhf (14.2.0-9ubuntu1) ... 124s Setting up fwupd (2.0.2-2) ... 125s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 125s fwupd.service is a disabled or a static unit not running, not starting it. 125s Setting up software-properties-common (0.107) ... 125s Processing triggers for libc-bin (2.40-1ubuntu3) ... 126s Processing triggers for man-db (2.13.0-1) ... 126s Processing triggers for dbus (1.14.10-4ubuntu5) ... 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s autopkgtest [09:37:02]: rebooting testbed after setup commands that affected boot 228s autopkgtest [09:38:37]: testbed running kernel: Linux 6.8.0-49-generic #49~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov 6 18:12:14 UTC 2 286s autopkgtest [09:39:35]: @@@@@@@@@@@@@@@@@@@@ apt-source imexam 326s Get:1 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (dsc) [2361 B] 326s Get:2 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (tar) [21.4 MB] 326s Get:3 http://ftpmaster.internal/ubuntu plucky/universe imexam 0.9.1-6 (diff) [7756 B] 326s gpgv: Signature made Tue Nov 28 09:16:30 2023 UTC 326s gpgv: using RSA key BAFC6C85F7CB143FEEB6FB157115AFD07710DCF7 326s gpgv: Can't check signature: No public key 326s dpkg-source: warning: cannot verify inline signature for ./imexam_0.9.1-6.dsc: no acceptable signature found 326s autopkgtest [09:40:15]: testing package imexam version 0.9.1-6 332s autopkgtest [09:40:21]: build not needed 340s autopkgtest [09:40:29]: test command1: preparing testbed 344s Reading package lists... 345s Building dependency tree... 345s Reading state information... 345s Starting pkgProblemResolver with broken count: 0 345s Starting 2 pkgProblemResolver with broken count: 0 345s Done 346s The following NEW packages will be installed: 346s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx ipython3 346s libblas3 libdeflate0 liberfa1 libfontconfig1 libfreetype6 libgfortran5 346s libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 346s libjpeg8 libjs-jquery libjs-jquery-hotkeys libjs-jquery-isonscreen 346s libjs-jquery-metadata libjs-jquery-tablesorter 346s libjs-jquery-throttle-debounce libjs-jquery-ui libjs-sphinxdoc 346s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 346s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 346s libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwcs8 libwebp7 libwebpdemux2 346s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 346s python3-appdirs python3-astropy python3-astropy-iers-data python3-asttokens 346s python3-brotli python3-contourpy python3-coverage python3-cycler 346s python3-dateutil python3-decorator python3-erfa python3-executing 346s python3-fonttools python3-fs python3-hypothesis python3-imexam 346s python3-iniconfig python3-ipython python3-jedi python3-kiwisolver 346s python3-lxml python3-lz4 python3-matplotlib python3-matplotlib-inline 346s python3-mpmath python3-numpy python3-packaging python3-parso python3-pexpect 346s python3-pil python3-pil.imagetk python3-pluggy python3-ply 346s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 346s python3-pytest-arraydiff python3-pytest-astropy 346s python3-pytest-astropy-header python3-pytest-cov python3-pytest-doctestplus 346s python3-pytest-filter-subpackage python3-pytest-mock 346s python3-pytest-remotedata python3-scipy python3-sortedcontainers 346s python3-stack-data python3-sympy python3-tk python3-traitlets 346s python3-typeshed python3-tz python3-ufolib2 python3-unicodedata2 346s python3-wcwidth python3.12-tk python3.13 python3.13-minimal python3.13-tk 346s tk8.6-blt2.5 unicode-data x11-common 346s 0 upgraded, 113 newly installed, 0 to remove and 0 not upgraded. 346s Need to get 74.7 MB of archives. 346s After this operation, 335 MB of additional disk space will be used. 346s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB] 347s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB] 347s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 347s Get:4 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] 347s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [909 kB] 347s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [330 kB] 347s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-mono all 2.37-8 [502 kB] 347s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf fonts-dejavu-core all 2.37-8 [835 kB] 347s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB] 347s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB] 347s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB] 347s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB] 347s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB] 347s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B] 347s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf libtk8.6 armhf 8.6.15-1 [685 kB] 347s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7build1 [525 kB] 347s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf blt armhf 2.5.3+dfsg-7build1 [4840 B] 347s Get:18 http://ftpmaster.internal/ubuntu plucky/universe armhf fonts-lyx all 2.4.2.1-1 [171 kB] 347s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 347s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-parso all 0.8.4-1 [67.6 kB] 347s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 348s Get:22 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-jedi all 0.19.1+ds1-1 [693 kB] 348s Get:23 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 348s Get:24 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib-inline all 0.1.6-2 [8784 B] 348s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 348s Get:26 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-prompt-toolkit all 3.0.48-1 [256 kB] 348s Get:27 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-asttokens all 3.0.0-1 [20.4 kB] 348s Get:28 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-executing all 2.1.0-0.1 [24.4 kB] 348s Get:29 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pure-eval all 0.2.3-1 [11.4 kB] 348s Get:30 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-stack-data all 0.6.3-1 [22.0 kB] 348s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf python3-ptyprocess all 0.7.0-6 [14.8 kB] 348s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pexpect all 4.9-3 [48.1 kB] 348s Get:33 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ipython all 8.29.0-1 [569 kB] 348s Get:34 http://ftpmaster.internal/ubuntu plucky/universe armhf ipython3 all 8.29.0-1 [4938 B] 348s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-4 [126 kB] 348s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libdeflate0 armhf 1.22-1 [38.9 kB] 348s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-9ubuntu1 [312 kB] 348s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-9ubuntu1 [125 kB] 348s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB] 348s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libharfbuzz0b armhf 10.0.1-1 [463 kB] 348s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB] 348s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg-turbo8 armhf 2.1.5-3ubuntu2 [127 kB] 348s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 348s Get:44 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-metadata all 12-4 [6582 B] 348s Get:45 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [192 kB] 348s Get:46 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 348s Get:47 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 348s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 348s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf libjs-sphinxdoc all 7.4.7-4 [158 kB] 348s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-4 [2086 kB] 348s Get:51 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 348s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf liblcms2-2 armhf 2.16-2 [137 kB] 348s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf liblerc4 armhf 4.0.0+ds-5ubuntu1 [160 kB] 348s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB] 348s Get:55 http://ftpmaster.internal/ubuntu plucky/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB] 348s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB] 348s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB] 348s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB] 348s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB] 348s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu4 [179 kB] 348s Get:61 http://ftpmaster.internal/ubuntu plucky/universe armhf libwcs8 armhf 8.4+ds-1 [238 kB] 348s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB] 348s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB] 348s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libxslt1.1 armhf 1.1.39-0exp1ubuntu1 [150 kB] 348s Get:65 http://ftpmaster.internal/ubuntu plucky/universe armhf python-matplotlib-data all 3.8.3-3ubuntu1 [2928 kB] 348s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf python3-appdirs all 1.4.4-4 [10.9 kB] 348s Get:67 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 348s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.2-1 [51.5 kB] 349s Get:69 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 349s Get:70 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB] 349s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dateutil all 2.9.0-3 [80.2 kB] 349s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf python3-sortedcontainers all 2.4.0-2 [27.6 kB] 349s Get:73 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-hypothesis all 6.119.3-1 [329 kB] 349s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11ubuntu1 [3975 kB] 349s Get:75 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-arraydiff all 0.6.1-3 [10.2 kB] 349s Get:76 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-astropy-header all 0.2.2-2 [8620 B] 349s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB] 349s Get:78 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-coverage armhf 7.4.4+dfsg1-0ubuntu3 [148 kB] 349s Get:79 http://ftpmaster.internal/ubuntu plucky/universe armhf libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 349s Get:80 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-cov all 5.0.0-1 [21.3 kB] 349s Get:81 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-doctestplus all 1.3.0-1 [23.7 kB] 349s Get:82 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-filter-subpackage all 0.2.0-1 [6094 B] 349s Get:83 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-mock all 3.14.0-2 [11.7 kB] 349s Get:84 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-remotedata all 0.4.1-1 [8650 B] 349s Get:85 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest-astropy all 0.11.0-1 [5902 B] 349s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf python3-ply all 3.11-7 [45.4 kB] 349s Get:87 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-astropy-iers-data all 0.2024.07.22.00.34.13-1 [1198 kB] 349s Get:88 http://ftpmaster.internal/ubuntu plucky/universe armhf liberfa1 armhf 2.0.1-1build1 [130 kB] 349s Get:89 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-erfa armhf 2.0.1.5+ds-1 [308 kB] 349s Get:90 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-astropy armhf 7.0.0-1 [3966 kB] 349s Get:91 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-brotli armhf 1.1.0-2build3 [324 kB] 349s Get:92 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-contourpy armhf 1.3.0-2build1 [238 kB] 349s Get:93 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-cycler all 0.12.1-1 [9716 B] 349s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2024.1-2 [31.4 kB] 349s Get:95 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fs all 2.4.16-5 [90.7 kB] 349s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lxml armhf 5.3.0-1build1 [1630 kB] 349s Get:97 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-lz4 armhf 4.0.2+dfsg-1build5 [25.5 kB] 349s Get:98 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5ubuntu1 [19.1 MB] 350s Get:99 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-mpmath all 1.3.0-1 [425 kB] 350s Get:100 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-sympy all 1.13.3-1 [4228 kB] 350s Get:101 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 350s Get:102 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-unicodedata2 armhf 15.1.0+ds-1build2 [357 kB] 350s Get:103 http://ftpmaster.internal/ubuntu plucky/universe armhf unicode-data all 15.1.0-1 [8878 kB] 351s Get:104 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-fonttools armhf 4.55.0-3 [1626 kB] 351s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libopenjp2-7 armhf 2.5.0-2ubuntu1 [170 kB] 351s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf python3-pil armhf 10.4.0-1ubuntu2 [446 kB] 351s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-tk armhf 3.12.7-3 [112 kB] 351s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-tk armhf 3.13.0-2 [103 kB] 351s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tk armhf 3.12.7-1 [9752 B] 351s Get:110 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pil.imagetk armhf 10.4.0-1ubuntu2 [8970 B] 351s Get:111 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-kiwisolver armhf 1.4.7-2build1 [71.1 kB] 351s Get:112 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-matplotlib armhf 3.8.3-3ubuntu1 [4597 kB] 351s Get:113 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-imexam armhf 0.9.1-6 [50.5 kB] 352s Fetched 74.7 MB in 5s (15.2 MB/s) 352s Selecting previously unselected package libpython3.13-minimal:armhf. 352s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 352s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_armhf.deb ... 352s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... 352s Selecting previously unselected package python3.13-minimal. 352s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_armhf.deb ... 352s Unpacking python3.13-minimal (3.13.0-2) ... 352s Selecting previously unselected package libjs-jquery. 352s Preparing to unpack .../002-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 352s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 352s Selecting previously unselected package libjs-jquery-hotkeys. 352s Preparing to unpack .../003-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... 352s Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 352s Selecting previously unselected package libtcl8.6:armhf. 352s Preparing to unpack .../004-libtcl8.6_8.6.15+dfsg-2_armhf.deb ... 352s Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ... 352s Selecting previously unselected package libfreetype6:armhf. 352s Preparing to unpack .../005-libfreetype6_2.13.3+dfsg-1_armhf.deb ... 352s Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... 352s Selecting previously unselected package fonts-dejavu-mono. 352s Preparing to unpack .../006-fonts-dejavu-mono_2.37-8_all.deb ... 352s Unpacking fonts-dejavu-mono (2.37-8) ... 352s Selecting previously unselected package fonts-dejavu-core. 352s Preparing to unpack .../007-fonts-dejavu-core_2.37-8_all.deb ... 352s Unpacking fonts-dejavu-core (2.37-8) ... 352s Selecting previously unselected package fontconfig-config. 352s Preparing to unpack .../008-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ... 353s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 353s Selecting previously unselected package libfontconfig1:armhf. 353s Preparing to unpack .../009-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ... 353s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ... 353s Selecting previously unselected package libxrender1:armhf. 353s Preparing to unpack .../010-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ... 353s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ... 353s Selecting previously unselected package libxft2:armhf. 353s Preparing to unpack .../011-libxft2_2.3.6-1build1_armhf.deb ... 353s Unpacking libxft2:armhf (2.3.6-1build1) ... 353s Selecting previously unselected package x11-common. 353s Preparing to unpack .../012-x11-common_1%3a7.7+23ubuntu3_all.deb ... 353s Unpacking x11-common (1:7.7+23ubuntu3) ... 353s Selecting previously unselected package libxss1:armhf. 353s Preparing to unpack .../013-libxss1_1%3a1.2.3-1build3_armhf.deb ... 353s Unpacking libxss1:armhf (1:1.2.3-1build3) ... 353s Selecting previously unselected package libtk8.6:armhf. 353s Preparing to unpack .../014-libtk8.6_8.6.15-1_armhf.deb ... 353s Unpacking libtk8.6:armhf (8.6.15-1) ... 353s Selecting previously unselected package tk8.6-blt2.5. 353s Preparing to unpack .../015-tk8.6-blt2.5_2.5.3+dfsg-7build1_armhf.deb ... 353s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 353s Selecting previously unselected package blt. 353s Preparing to unpack .../016-blt_2.5.3+dfsg-7build1_armhf.deb ... 353s Unpacking blt (2.5.3+dfsg-7build1) ... 353s Selecting previously unselected package fonts-lyx. 353s Preparing to unpack .../017-fonts-lyx_2.4.2.1-1_all.deb ... 353s Unpacking fonts-lyx (2.4.2.1-1) ... 353s Selecting previously unselected package python3-decorator. 353s Preparing to unpack .../018-python3-decorator_5.1.1-5_all.deb ... 353s Unpacking python3-decorator (5.1.1-5) ... 353s Selecting previously unselected package python3-parso. 353s Preparing to unpack .../019-python3-parso_0.8.4-1_all.deb ... 353s Unpacking python3-parso (0.8.4-1) ... 353s Selecting previously unselected package python3-typeshed. 353s Preparing to unpack .../020-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 353s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 354s Selecting previously unselected package python3-jedi. 354s Preparing to unpack .../021-python3-jedi_0.19.1+ds1-1_all.deb ... 354s Unpacking python3-jedi (0.19.1+ds1-1) ... 354s Selecting previously unselected package python3-traitlets. 354s Preparing to unpack .../022-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 354s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 354s Selecting previously unselected package python3-matplotlib-inline. 354s Preparing to unpack .../023-python3-matplotlib-inline_0.1.6-2_all.deb ... 354s Unpacking python3-matplotlib-inline (0.1.6-2) ... 354s Selecting previously unselected package python3-wcwidth. 354s Preparing to unpack .../024-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... 354s Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... 354s Selecting previously unselected package python3-prompt-toolkit. 354s Preparing to unpack .../025-python3-prompt-toolkit_3.0.48-1_all.deb ... 354s Unpacking python3-prompt-toolkit (3.0.48-1) ... 354s Selecting previously unselected package python3-asttokens. 354s Preparing to unpack .../026-python3-asttokens_3.0.0-1_all.deb ... 354s Unpacking python3-asttokens (3.0.0-1) ... 354s Selecting previously unselected package python3-executing. 355s Preparing to unpack .../027-python3-executing_2.1.0-0.1_all.deb ... 355s Unpacking python3-executing (2.1.0-0.1) ... 355s Selecting previously unselected package python3-pure-eval. 355s Preparing to unpack .../028-python3-pure-eval_0.2.3-1_all.deb ... 355s Unpacking python3-pure-eval (0.2.3-1) ... 355s Selecting previously unselected package python3-stack-data. 355s Preparing to unpack .../029-python3-stack-data_0.6.3-1_all.deb ... 355s Unpacking python3-stack-data (0.6.3-1) ... 355s Selecting previously unselected package python3-ptyprocess. 355s Preparing to unpack .../030-python3-ptyprocess_0.7.0-6_all.deb ... 355s Unpacking python3-ptyprocess (0.7.0-6) ... 355s Selecting previously unselected package python3-pexpect. 355s Preparing to unpack .../031-python3-pexpect_4.9-3_all.deb ... 355s Unpacking python3-pexpect (4.9-3) ... 355s Selecting previously unselected package python3-ipython. 355s Preparing to unpack .../032-python3-ipython_8.29.0-1_all.deb ... 355s Unpacking python3-ipython (8.29.0-1) ... 355s Selecting previously unselected package ipython3. 355s Preparing to unpack .../033-ipython3_8.29.0-1_all.deb ... 355s Unpacking ipython3 (8.29.0-1) ... 355s Selecting previously unselected package libblas3:armhf. 355s Preparing to unpack .../034-libblas3_3.12.0-4_armhf.deb ... 355s Unpacking libblas3:armhf (3.12.0-4) ... 355s Selecting previously unselected package libdeflate0:armhf. 355s Preparing to unpack .../035-libdeflate0_1.22-1_armhf.deb ... 355s Unpacking libdeflate0:armhf (1.22-1) ... 355s Selecting previously unselected package libgfortran5:armhf. 355s Preparing to unpack .../036-libgfortran5_14.2.0-9ubuntu1_armhf.deb ... 355s Unpacking libgfortran5:armhf (14.2.0-9ubuntu1) ... 355s Selecting previously unselected package libgomp1:armhf. 355s Preparing to unpack .../037-libgomp1_14.2.0-9ubuntu1_armhf.deb ... 355s Unpacking libgomp1:armhf (14.2.0-9ubuntu1) ... 355s Selecting previously unselected package libgraphite2-3:armhf. 355s Preparing to unpack .../038-libgraphite2-3_1.3.14-2ubuntu1_armhf.deb ... 355s Unpacking libgraphite2-3:armhf (1.3.14-2ubuntu1) ... 355s Selecting previously unselected package libharfbuzz0b:armhf. 355s Preparing to unpack .../039-libharfbuzz0b_10.0.1-1_armhf.deb ... 355s Unpacking libharfbuzz0b:armhf (10.0.1-1) ... 355s Selecting previously unselected package libimagequant0:armhf. 355s Preparing to unpack .../040-libimagequant0_2.18.0-1build1_armhf.deb ... 355s Unpacking libimagequant0:armhf (2.18.0-1build1) ... 355s Selecting previously unselected package libjpeg-turbo8:armhf. 355s Preparing to unpack .../041-libjpeg-turbo8_2.1.5-3ubuntu2_armhf.deb ... 355s Unpacking libjpeg-turbo8:armhf (2.1.5-3ubuntu2) ... 355s Selecting previously unselected package libjpeg8:armhf. 355s Preparing to unpack .../042-libjpeg8_8c-2ubuntu11_armhf.deb ... 355s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 355s Selecting previously unselected package libjs-jquery-metadata. 355s Preparing to unpack .../043-libjs-jquery-metadata_12-4_all.deb ... 355s Unpacking libjs-jquery-metadata (12-4) ... 355s Selecting previously unselected package libjs-jquery-tablesorter. 356s Preparing to unpack .../044-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-4_all.deb ... 356s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-4) ... 356s Selecting previously unselected package libjs-jquery-throttle-debounce. 356s Preparing to unpack .../045-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 356s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 356s Selecting previously unselected package libjs-jquery-ui. 356s Preparing to unpack .../046-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 356s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 356s Selecting previously unselected package libjs-underscore. 356s Preparing to unpack .../047-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 356s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 356s Selecting previously unselected package libjs-sphinxdoc. 356s Preparing to unpack .../048-libjs-sphinxdoc_7.4.7-4_all.deb ... 356s Unpacking libjs-sphinxdoc (7.4.7-4) ... 356s Selecting previously unselected package liblapack3:armhf. 356s Preparing to unpack .../049-liblapack3_3.12.0-4_armhf.deb ... 356s Unpacking liblapack3:armhf (3.12.0-4) ... 356s Selecting previously unselected package liblbfgsb0:armhf. 356s Preparing to unpack .../050-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 356s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 356s Selecting previously unselected package liblcms2-2:armhf. 356s Preparing to unpack .../051-liblcms2-2_2.16-2_armhf.deb ... 356s Unpacking liblcms2-2:armhf (2.16-2) ... 356s Selecting previously unselected package liblerc4:armhf. 356s Preparing to unpack .../052-liblerc4_4.0.0+ds-5ubuntu1_armhf.deb ... 356s Unpacking liblerc4:armhf (4.0.0+ds-5ubuntu1) ... 356s Selecting previously unselected package libpython3.13-stdlib:armhf. 356s Preparing to unpack .../053-libpython3.13-stdlib_3.13.0-2_armhf.deb ... 356s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ... 356s Selecting previously unselected package libqhull-r8.0:armhf. 356s Preparing to unpack .../054-libqhull-r8.0_2020.2-6build1_armhf.deb ... 356s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ... 356s Selecting previously unselected package libraqm0:armhf. 356s Preparing to unpack .../055-libraqm0_0.10.1-1build1_armhf.deb ... 356s Unpacking libraqm0:armhf (0.10.1-1build1) ... 356s Selecting previously unselected package libsharpyuv0:armhf. 356s Preparing to unpack .../056-libsharpyuv0_1.4.0-0.1_armhf.deb ... 356s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... 356s Selecting previously unselected package libjbig0:armhf. 356s Preparing to unpack .../057-libjbig0_2.1-6.1ubuntu2_armhf.deb ... 356s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ... 356s Selecting previously unselected package libwebp7:armhf. 356s Preparing to unpack .../058-libwebp7_1.4.0-0.1_armhf.deb ... 356s Unpacking libwebp7:armhf (1.4.0-0.1) ... 356s Selecting previously unselected package libtiff6:armhf. 356s Preparing to unpack .../059-libtiff6_4.5.1+git230720-4ubuntu4_armhf.deb ... 356s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu4) ... 357s Selecting previously unselected package libwcs8:armhf. 357s Preparing to unpack .../060-libwcs8_8.4+ds-1_armhf.deb ... 357s Unpacking libwcs8:armhf (8.4+ds-1) ... 357s Selecting previously unselected package libwebpdemux2:armhf. 357s Preparing to unpack .../061-libwebpdemux2_1.4.0-0.1_armhf.deb ... 357s Unpacking libwebpdemux2:armhf (1.4.0-0.1) ... 357s Selecting previously unselected package libwebpmux3:armhf. 357s Preparing to unpack .../062-libwebpmux3_1.4.0-0.1_armhf.deb ... 357s Unpacking libwebpmux3:armhf (1.4.0-0.1) ... 357s Selecting previously unselected package libxslt1.1:armhf. 357s Preparing to unpack .../063-libxslt1.1_1.1.39-0exp1ubuntu1_armhf.deb ... 357s Unpacking libxslt1.1:armhf (1.1.39-0exp1ubuntu1) ... 357s Selecting previously unselected package python-matplotlib-data. 357s Preparing to unpack .../064-python-matplotlib-data_3.8.3-3ubuntu1_all.deb ... 357s Unpacking python-matplotlib-data (3.8.3-3ubuntu1) ... 357s Selecting previously unselected package python3-appdirs. 357s Preparing to unpack .../065-python3-appdirs_1.4.4-4_all.deb ... 357s Unpacking python3-appdirs (1.4.4-4) ... 357s Selecting previously unselected package python3-iniconfig. 357s Preparing to unpack .../066-python3-iniconfig_1.1.1-2_all.deb ... 357s Unpacking python3-iniconfig (1.1.1-2) ... 357s Selecting previously unselected package python3-packaging. 357s Preparing to unpack .../067-python3-packaging_24.2-1_all.deb ... 357s Unpacking python3-packaging (24.2-1) ... 357s Selecting previously unselected package python3-pluggy. 357s Preparing to unpack .../068-python3-pluggy_1.5.0-1_all.deb ... 357s Unpacking python3-pluggy (1.5.0-1) ... 357s Selecting previously unselected package python3-pytest. 357s Preparing to unpack .../069-python3-pytest_8.3.3-1_all.deb ... 357s Unpacking python3-pytest (8.3.3-1) ... 357s Selecting previously unselected package python3-dateutil. 357s Preparing to unpack .../070-python3-dateutil_2.9.0-3_all.deb ... 357s Unpacking python3-dateutil (2.9.0-3) ... 357s Selecting previously unselected package python3-sortedcontainers. 357s Preparing to unpack .../071-python3-sortedcontainers_2.4.0-2_all.deb ... 357s Unpacking python3-sortedcontainers (2.4.0-2) ... 357s Selecting previously unselected package python3-hypothesis. 357s Preparing to unpack .../072-python3-hypothesis_6.119.3-1_all.deb ... 357s Unpacking python3-hypothesis (6.119.3-1) ... 357s Selecting previously unselected package python3-numpy. 357s Preparing to unpack .../073-python3-numpy_1%3a1.26.4+ds-11ubuntu1_armhf.deb ... 357s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 358s Selecting previously unselected package python3-pytest-arraydiff. 358s Preparing to unpack .../074-python3-pytest-arraydiff_0.6.1-3_all.deb ... 358s Unpacking python3-pytest-arraydiff (0.6.1-3) ... 358s Selecting previously unselected package python3-pytest-astropy-header. 358s Preparing to unpack .../075-python3-pytest-astropy-header_0.2.2-2_all.deb ... 358s Unpacking python3-pytest-astropy-header (0.2.2-2) ... 358s Selecting previously unselected package python3.13. 358s Preparing to unpack .../076-python3.13_3.13.0-2_armhf.deb ... 358s Unpacking python3.13 (3.13.0-2) ... 358s Selecting previously unselected package python3-coverage. 358s Preparing to unpack .../077-python3-coverage_7.4.4+dfsg1-0ubuntu3_armhf.deb ... 358s Unpacking python3-coverage (7.4.4+dfsg1-0ubuntu3) ... 358s Selecting previously unselected package libjs-jquery-isonscreen. 358s Preparing to unpack .../078-libjs-jquery-isonscreen_1.2.0-1.1_all.deb ... 358s Unpacking libjs-jquery-isonscreen (1.2.0-1.1) ... 358s Selecting previously unselected package python3-pytest-cov. 358s Preparing to unpack .../079-python3-pytest-cov_5.0.0-1_all.deb ... 358s Unpacking python3-pytest-cov (5.0.0-1) ... 358s Selecting previously unselected package python3-pytest-doctestplus. 358s Preparing to unpack .../080-python3-pytest-doctestplus_1.3.0-1_all.deb ... 358s Unpacking python3-pytest-doctestplus (1.3.0-1) ... 358s Selecting previously unselected package python3-pytest-filter-subpackage. 358s Preparing to unpack .../081-python3-pytest-filter-subpackage_0.2.0-1_all.deb ... 358s Unpacking python3-pytest-filter-subpackage (0.2.0-1) ... 358s Selecting previously unselected package python3-pytest-mock. 358s Preparing to unpack .../082-python3-pytest-mock_3.14.0-2_all.deb ... 358s Unpacking python3-pytest-mock (3.14.0-2) ... 358s Selecting previously unselected package python3-pytest-remotedata. 358s Preparing to unpack .../083-python3-pytest-remotedata_0.4.1-1_all.deb ... 358s Unpacking python3-pytest-remotedata (0.4.1-1) ... 358s Selecting previously unselected package python3-pytest-astropy. 358s Preparing to unpack .../084-python3-pytest-astropy_0.11.0-1_all.deb ... 358s Unpacking python3-pytest-astropy (0.11.0-1) ... 358s Selecting previously unselected package python3-ply. 358s 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session starts ============================== 417s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 417s rootdir: /tmp/autopkgtest.2KQxny/autopkgtest_tmp 417s plugins: typeguard-4.4.1, hypothesis-6.119.3, arraydiff-0.6.1, astropy-header-0.2.2, cov-5.0.0, doctestplus-1.3.0, filter-subpackage-0.2.0, mock-3.14.0, remotedata-0.4.1, astropy-0.11.0 417s collected 21 items 417s 418s tests/test_imexamine.py ..sFFxFFs [ 42%] 418s tests/test_util.py ............ [100%] 418s 418s =================================== FAILURES =================================== 418s ________________________________ test_line_fit _________________________________ 418s 418s def test_line_fit(): 418s """Fit a Gaussian1D line to the data.""" 418s plots = Imexamine() 418s in_amp = 3. 418s in_mean = 50. 418s in_stddev = 2. 418s in_const = 20. 418s 418s # Set all the lines to be Gaussians 418s line_gauss = in_const + in_amp * np.exp(-0.5 * ((xx - in_mean) / in_stddev)**2) 418s plots.set_data(line_gauss) 418s > fit = plots.line_fit(50, 50, form='Gaussian1D', genplot=False) 418s 418s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:86: 418s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 418s /usr/lib/python3/dist-packages/imexam/imexamine.py:765: in line_fit 418s amp, xout, yout, sigma, sigmay = self.gauss_center(xx, 418s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 418s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 418s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 418s results = fit(model, xx, yy, data) 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 418s return func(self, model, x, y, z=z, **kwargs) 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 418s init_values, fitparams, cov_x = self._run_fitter( 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 418s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 418s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 418s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 418s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 418s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 418s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 418s 418s params = array([ 3., 15., 15., 3., 3., 0., 20.]) 418s model = 418s weights = 1.0 418s x = array([[ 0., 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12., 418s 13., 14., 15., 16., 17., 18., 19., 20..., 10., 11., 12., 418s 13., 14., 15., 16., 17., 18., 19., 20., 21., 22., 23., 24., 25., 418s 26., 27., 28., 29.]]) 418s y = array([[ 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 418s 0., 0., 0., 0., 0., 0., 0., 0..., 29., 29., 29., 418s 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 418s 29., 29., 29., 29.]]) 418s z = array([[20. , 20. , 20. , 20.00000005, 20.00000081, 418s 20.00001118, 20.0001202 , 20.00100639...2699, 20.00656247, 20.00100639, 20.0001202 , 418s 20.00001118, 20.00000081, 20.00000005, 20. , 20. ]]) 418s fit_param_indices = None 418s 418s @staticmethod 418s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 418s """ 418s Wraps the method calculating the Jacobian of the function to account 418s for model constraints. 418s `scipy.optimize.leastsq` expects the function derivative to have the 418s above signature (parlist, (argtuple)). In order to accommodate model 418s constraints, instead of using p directly, we set the parameter list in 418s this function. 418s """ 418s if weights is None: 418s weights = 1.0 418s 418s if model.has_fixed or model.has_tied: 418s # update the parameters with the current values from the fitter 418s fitter_to_model_params(model, params) 418s if z is None: 418s full = np.array(model.fit_deriv(x, *model.parameters)) 418s if not model.col_fit_deriv: 418s full_deriv = np.ravel(weights) * full.T 418s else: 418s full_deriv = np.ravel(weights) * full 418s else: 418s full = np.array( 418s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 418s ) 418s if not model.col_fit_deriv: 418s full_deriv = np.ravel(weights) * full.T 418s else: 418s full_deriv = np.ravel(weights) * full 418s 418s pars = [getattr(model, name) for name in model.param_names] 418s fixed = [par.fixed for par in pars] 418s tied = [par.tied for par in pars] 418s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 418s fix_and_tie = np.logical_or(fixed, tied) 418s ind = np.logical_not(fix_and_tie) 418s 418s if not model.col_fit_deriv: 418s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 418s else: 418s residues = full_deriv[np.nonzero(ind)] 418s 418s return [np.ravel(_) for _ in residues] 418s else: 418s if z is None: 418s fit_deriv = np.array(model.fit_deriv(x, *params)) 418s try: 418s output = np.array( 418s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 418s ) 418s if output.shape != fit_deriv.shape: 418s output = np.array( 418s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 418s ) 418s return output 418s except ValueError: 418s return np.array( 418s [ 418s np.ravel(_) 418s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 418s ] 418s ).transpose() 418s else: 418s if not model.col_fit_deriv: 418s return [ 418s np.ravel(_) 418s for _ in ( 418s np.ravel(weights) 418s * np.array(model.fit_deriv(x, y, *params)).T 418s ).T 418s ] 418s return [ 418s np.ravel(_) 418s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 418s ] 418s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 418s 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 418s ----------------------------- Captured stdout call ----------------------------- 418s using model: 418s Name: Gaussian1D 418s N_inputs: 1 418s N_outputs: 1 418s Fittable parameters: ('amplitude', 'mean', 'stddev') 418s ------------------------------ Captured log call ------------------------------- 418s INFO imexam.util:imexamine.py:749 using model: 418s Name: Gaussian1D 418s N_inputs: 1 418s N_outputs: 1 418s Fittable parameters: ('amplitude', 'mean', 'stddev') 418s _______________________________ test_column_fit ________________________________ 418s 418s def test_column_fit(): 418s """Fit a Gaussian1D column to the data.""" 418s plots = Imexamine() 418s in_amp = 3. 418s in_mean = 50. 418s in_stddev = 2. 418s in_const = 20. 418s # Set all the columns to be Gaussians 418s col_gauss = in_const + in_amp * np.exp(-0.5 * ((yy - in_mean) / in_stddev)**2) 418s plots.set_data(col_gauss) 418s > fit = plots.column_fit(50, 50, form='Gaussian1D', genplot=False) 418s 418s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:104: 418s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 418s /usr/lib/python3/dist-packages/imexam/imexamine.py:917: in column_fit 418s result = self.line_fit(x, y, data=data, form=form, 418s /usr/lib/python3/dist-packages/imexam/imexamine.py:765: in line_fit 418s amp, xout, yout, sigma, sigmay = self.gauss_center(xx, 418s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 418s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 418s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 418s results = fit(model, xx, yy, data) 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 418s return func(self, model, x, y, z=z, **kwargs) 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 418s init_values, fitparams, cov_x = self._run_fitter( 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 418s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 418s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 418s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 418s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 418s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 418s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 418s 418s params = array([ 3., 15., 15., 3., 3., 0., 20.]) 418s model = 418s weights = 1.0 418s x = array([[ 0., 1., 2., 3., 4., 5., 6., 7., 8., 9., 10., 11., 12., 418s 13., 14., 15., 16., 17., 18., 19., 20..., 10., 11., 12., 418s 13., 14., 15., 16., 17., 18., 19., 20., 21., 22., 23., 24., 25., 418s 26., 27., 28., 29.]]) 418s y = array([[ 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 0., 418s 0., 0., 0., 0., 0., 0., 0., 0..., 29., 29., 29., 418s 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 29., 418s 29., 29., 29., 29.]]) 418s z = array([[20. , 20. , 20. , 20. , 20. , 418s 20. , 20. , 20. ... , 20. , 20. , 20. , 418s 20. , 20. , 20. , 20. , 20. ]]) 418s fit_param_indices = None 418s 418s @staticmethod 418s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 418s """ 418s Wraps the method calculating the Jacobian of the function to account 418s for model constraints. 418s `scipy.optimize.leastsq` expects the function derivative to have the 418s above signature (parlist, (argtuple)). In order to accommodate model 418s constraints, instead of using p directly, we set the parameter list in 418s this function. 418s """ 418s if weights is None: 418s weights = 1.0 418s 418s if model.has_fixed or model.has_tied: 418s # update the parameters with the current values from the fitter 418s fitter_to_model_params(model, params) 418s if z is None: 418s full = np.array(model.fit_deriv(x, *model.parameters)) 418s if not model.col_fit_deriv: 418s full_deriv = np.ravel(weights) * full.T 418s else: 418s full_deriv = np.ravel(weights) * full 418s else: 418s full = np.array( 418s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 418s ) 418s if not model.col_fit_deriv: 418s full_deriv = np.ravel(weights) * full.T 418s else: 418s full_deriv = np.ravel(weights) * full 418s 418s pars = [getattr(model, name) for name in model.param_names] 418s fixed = [par.fixed for par in pars] 418s tied = [par.tied for par in pars] 418s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 418s fix_and_tie = np.logical_or(fixed, tied) 418s ind = np.logical_not(fix_and_tie) 418s 418s if not model.col_fit_deriv: 418s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 418s else: 418s residues = full_deriv[np.nonzero(ind)] 418s 418s return [np.ravel(_) for _ in residues] 418s else: 418s if z is None: 418s fit_deriv = np.array(model.fit_deriv(x, *params)) 418s try: 418s output = np.array( 418s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 418s ) 418s if output.shape != fit_deriv.shape: 418s output = np.array( 418s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 418s ) 418s return output 418s except ValueError: 418s return np.array( 418s [ 418s np.ravel(_) 418s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 418s ] 418s ).transpose() 418s else: 418s if not model.col_fit_deriv: 418s return [ 418s np.ravel(_) 418s for _ in ( 418s np.ravel(weights) 418s * np.array(model.fit_deriv(x, y, *params)).T 418s ).T 418s ] 418s return [ 418s np.ravel(_) 418s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 418s ] 418s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 418s 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 418s ----------------------------- Captured stdout call ----------------------------- 418s using model: 418s Name: Gaussian1D 418s N_inputs: 1 418s N_outputs: 1 418s Fittable parameters: ('amplitude', 'mean', 'stddev') 418s ------------------------------ Captured log call ------------------------------- 418s INFO imexam.util:imexamine.py:749 using model: 418s Name: Gaussian1D 418s N_inputs: 1 418s N_outputs: 1 418s Fittable parameters: ('amplitude', 'mean', 'stddev') 418s _____________________________ test_radial_profile ______________________________ 418s 418s def test_radial_profile(): 418s """Test the radial profile function 418s No background subtraction 418s individual pixel results used 418s """ 418s from astropy.convolution import Gaussian2DKernel 418s data = Gaussian2DKernel(1.5, x_size=25, y_size=25) 418s xx, yy = np.meshgrid(np.arange(25), np.arange(25)) 418s x0, y0 = np.where(data.array == data.array.max()) 418s 418s rad_in = np.sqrt((xx - x0)**2 + (yy - y0)**2) 418s rad_in = rad_in.ravel() 418s flux_in = data.array.ravel() 418s 418s order = np.argsort(rad_in) 418s rad_in = rad_in[order] 418s flux_in = flux_in[order] 418s 418s plots = Imexamine() 418s plots.set_data(data.array) 418s 418s plots.radial_profile_pars['pixels'][0] = True 418s plots.radial_profile_pars['background'][0] = False 418s plots.radial_profile_pars['clip'][0] = False 418s > rad_out, flux_out = plots.radial_profile(x0, y0, genplot=False) 418s 418s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:160: 418s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 418s /usr/lib/python3/dist-packages/imexam/imexamine.py:1102: in radial_profile 418s amp, centerx, centery, sigmax, sigmay = self.gauss_center(xx, yy, data, delta=datasize) 418s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 418s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 418s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 418s results = fit(model, xx, yy, data) 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 418s return func(self, model, x, y, z=z, **kwargs) 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 418s init_values, fitparams, cov_x = self._run_fitter( 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 418s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 418s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 418s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 418s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 418s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 418s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 418s 418s params = array([7.06778109e-02, 4.00000000e+00, 4.00000000e+00, 3.00000000e+00, 418s 3.00000000e+00, 0.00000000e+00, 5.77193322e-05]) 418s model = 418s weights = 1.0 418s x = array([[0., 1., 2., 3., 4., 5., 6., 7.], 418s [0., 1., 2., 3., 4., 5., 6., 7.], 418s [0., 1., 2., 3., 4., 5., 6., ... [0., 1., 2., 3., 4., 5., 6., 7.], 418s [0., 1., 2., 3., 4., 5., 6., 7.], 418s [0., 1., 2., 3., 4., 5., 6., 7.]]) 418s y = array([[0., 0., 0., 0., 0., 0., 0., 0.], 418s [1., 1., 1., 1., 1., 1., 1., 1.], 418s [2., 2., 2., 2., 2., 2., 2., ... [5., 5., 5., 5., 5., 5., 5., 5.], 418s [6., 6., 6., 6., 6., 6., 6., 6.], 418s [7., 7., 7., 7., 7., 7., 7., 7.]]) 418s z = array([[5.77193322e-05, 2.73457911e-04, 8.30691786e-04, 1.61796667e-03, 418s 2.02059585e-03, 1.61796667e-03, 8.3069...29556643e-03, 3.93558331e-03, 7.66546959e-03, 418s 9.57301302e-03, 7.66546959e-03, 3.93558331e-03, 1.29556643e-03]]) 418s fit_param_indices = None 418s 418s @staticmethod 418s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 418s """ 418s Wraps the method calculating the Jacobian of the function to account 418s for model constraints. 418s `scipy.optimize.leastsq` expects the function derivative to have the 418s above signature (parlist, (argtuple)). In order to accommodate model 418s constraints, instead of using p directly, we set the parameter list in 418s this function. 418s """ 418s if weights is None: 418s weights = 1.0 418s 418s if model.has_fixed or model.has_tied: 418s # update the parameters with the current values from the fitter 418s fitter_to_model_params(model, params) 418s if z is None: 418s full = np.array(model.fit_deriv(x, *model.parameters)) 418s if not model.col_fit_deriv: 418s full_deriv = np.ravel(weights) * full.T 418s else: 418s full_deriv = np.ravel(weights) * full 418s else: 418s full = np.array( 418s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 418s ) 418s if not model.col_fit_deriv: 418s full_deriv = np.ravel(weights) * full.T 418s else: 418s full_deriv = np.ravel(weights) * full 418s 418s pars = [getattr(model, name) for name in model.param_names] 418s fixed = [par.fixed for par in pars] 418s tied = [par.tied for par in pars] 418s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 418s fix_and_tie = np.logical_or(fixed, tied) 418s ind = np.logical_not(fix_and_tie) 418s 418s if not model.col_fit_deriv: 418s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 418s else: 418s residues = full_deriv[np.nonzero(ind)] 418s 418s return [np.ravel(_) for _ in residues] 418s else: 418s if z is None: 418s fit_deriv = np.array(model.fit_deriv(x, *params)) 418s try: 418s output = np.array( 418s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 418s ) 418s if output.shape != fit_deriv.shape: 418s output = np.array( 418s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 418s ) 418s return output 418s except ValueError: 418s return np.array( 418s [ 418s np.ravel(_) 418s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 418s ] 418s ).transpose() 418s else: 418s if not model.col_fit_deriv: 418s return [ 418s np.ravel(_) 418s for _ in ( 418s np.ravel(weights) 418s * np.array(model.fit_deriv(x, y, *params)).T 418s ).T 418s ] 418s return [ 418s np.ravel(_) 418s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 418s ] 418s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 418s 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 418s ________________________ test_radial_profile_cumulative ________________________ 418s 418s def test_radial_profile_cumulative(): 418s """Test the radial profile function 418s without background subtraction 418s with each pixel integer binned 418s """ 418s from astropy.convolution import Gaussian2DKernel 418s ksize = 25 418s data = Gaussian2DKernel(1.5, x_size=ksize, y_size=ksize) 418s xx, yy = np.meshgrid(np.arange(ksize), np.arange(ksize)) 418s x0, y0 = np.where(data.array == data.array.max()) 418s rad_in = np.sqrt((xx - x0)**2 + (yy - y0)**2) 418s 418s rad_in = rad_in.ravel() 418s flux_in = data.array.ravel() 418s 418s indices = np.argsort(rad_in) 418s rad_in = rad_in[indices] 418s flux_in = flux_in[indices] 418s 418s # now bin the radflux like we expect 418s rad_in = rad_in.astype(int) 418s flux_in = np.bincount(rad_in, flux_in) / np.bincount(rad_in) 418s rad_in = np.arange(len(flux_in)) 418s assert (data.array[x0, y0] == flux_in[0]) 418s 418s # check the binned results 418s plots = Imexamine() 418s plots.set_data(data.array) 418s plots.radial_profile_pars['pixels'][0] = False 418s plots.radial_profile_pars['background'][0] = False 418s plots.radial_profile_pars['clip'][0] = False 418s > rad_out, flux_out = plots.radial_profile(x0, y0, genplot=False) 418s 418s /usr/lib/python3/dist-packages/imexam/tests/test_imexamine.py:206: 418s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 418s /usr/lib/python3/dist-packages/imexam/imexamine.py:1102: in radial_profile 418s amp, centerx, centery, sigmax, sigmay = self.gauss_center(xx, yy, data, delta=datasize) 418s /usr/lib/python3/dist-packages/imexam/imexamine.py:1007: in gauss_center 418s fit = math_helper.fit_gaussian_2d(chunk, sigma_factor=sigma_factor) 418s /usr/lib/python3/dist-packages/imexam/math_helper.py:254: in fit_gaussian_2d 418s results = fit(model, xx, yy, data) 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:303: in wrapper 418s return func(self, model, x, y, z=z, **kwargs) 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1434: in __call__ 418s init_values, fitparams, cov_x = self._run_fitter( 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1509: in _run_fitter 418s fitparams, cov_x, dinfo, mess, ierr = optimize.leastsq( 418s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:437: in leastsq 418s _check_func('leastsq', 'Dfun', Dfun, x0, args, n, (n, m)) 418s /usr/lib/python3/dist-packages/scipy/optimize/_minpack_py.py:29: in _check_func 418s res = atleast_1d(thefunc(*((x0[:numinputs],) + args))) 418s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 418s 418s params = array([7.06778109e-02, 4.00000000e+00, 4.00000000e+00, 3.00000000e+00, 418s 3.00000000e+00, 0.00000000e+00, 5.77193322e-05]) 418s model = 418s weights = 1.0 418s x = array([[0., 1., 2., 3., 4., 5., 6., 7.], 418s [0., 1., 2., 3., 4., 5., 6., 7.], 418s [0., 1., 2., 3., 4., 5., 6., ... [0., 1., 2., 3., 4., 5., 6., 7.], 418s [0., 1., 2., 3., 4., 5., 6., 7.], 418s [0., 1., 2., 3., 4., 5., 6., 7.]]) 418s y = array([[0., 0., 0., 0., 0., 0., 0., 0.], 418s [1., 1., 1., 1., 1., 1., 1., 1.], 418s [2., 2., 2., 2., 2., 2., 2., ... [5., 5., 5., 5., 5., 5., 5., 5.], 418s [6., 6., 6., 6., 6., 6., 6., 6.], 418s [7., 7., 7., 7., 7., 7., 7., 7.]]) 418s z = array([[5.77193322e-05, 2.73457911e-04, 8.30691786e-04, 1.61796667e-03, 418s 2.02059585e-03, 1.61796667e-03, 8.3069...29556643e-03, 3.93558331e-03, 7.66546959e-03, 418s 9.57301302e-03, 7.66546959e-03, 3.93558331e-03, 1.29556643e-03]]) 418s fit_param_indices = None 418s 418s @staticmethod 418s def _wrap_deriv(params, model, weights, x, y, z=None, fit_param_indices=None): 418s """ 418s Wraps the method calculating the Jacobian of the function to account 418s for model constraints. 418s `scipy.optimize.leastsq` expects the function derivative to have the 418s above signature (parlist, (argtuple)). In order to accommodate model 418s constraints, instead of using p directly, we set the parameter list in 418s this function. 418s """ 418s if weights is None: 418s weights = 1.0 418s 418s if model.has_fixed or model.has_tied: 418s # update the parameters with the current values from the fitter 418s fitter_to_model_params(model, params) 418s if z is None: 418s full = np.array(model.fit_deriv(x, *model.parameters)) 418s if not model.col_fit_deriv: 418s full_deriv = np.ravel(weights) * full.T 418s else: 418s full_deriv = np.ravel(weights) * full 418s else: 418s full = np.array( 418s [np.ravel(_) for _ in model.fit_deriv(x, y, *model.parameters)] 418s ) 418s if not model.col_fit_deriv: 418s full_deriv = np.ravel(weights) * full.T 418s else: 418s full_deriv = np.ravel(weights) * full 418s 418s pars = [getattr(model, name) for name in model.param_names] 418s fixed = [par.fixed for par in pars] 418s tied = [par.tied for par in pars] 418s tied = list(np.where([par.tied is not False for par in pars], True, tied)) 418s fix_and_tie = np.logical_or(fixed, tied) 418s ind = np.logical_not(fix_and_tie) 418s 418s if not model.col_fit_deriv: 418s residues = np.asarray(full_deriv[np.nonzero(ind)]).T 418s else: 418s residues = full_deriv[np.nonzero(ind)] 418s 418s return [np.ravel(_) for _ in residues] 418s else: 418s if z is None: 418s fit_deriv = np.array(model.fit_deriv(x, *params)) 418s try: 418s output = np.array( 418s [np.ravel(_) for _ in np.array(weights) * fit_deriv] 418s ) 418s if output.shape != fit_deriv.shape: 418s output = np.array( 418s [np.ravel(_) for _ in np.atleast_2d(weights).T * fit_deriv] 418s ) 418s return output 418s except ValueError: 418s return np.array( 418s [ 418s np.ravel(_) 418s for _ in np.array(weights) * np.moveaxis(fit_deriv, -1, 0) 418s ] 418s ).transpose() 418s else: 418s if not model.col_fit_deriv: 418s return [ 418s np.ravel(_) 418s for _ in ( 418s np.ravel(weights) 418s * np.array(model.fit_deriv(x, y, *params)).T 418s ).T 418s ] 418s return [ 418s np.ravel(_) 418s > for _ in weights * np.array(model.fit_deriv(x, y, *params)) 418s ] 418s E ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (7,) + inhomogeneous part. 418s 418s /usr/lib/python3/dist-packages/astropy/modeling/fitting.py:1287: ValueError 418s =============================== warnings summary =============================== 418s ../../../usr/lib/python3/dist-packages/imexam/__init__.py:12 418s /usr/lib/python3/dist-packages/imexam/__init__.py:12: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 418s from pkg_resources import get_distribution, DistributionNotFound 418s 418s tests/test_imexamine.py::test_radial_profile 418s tests/test_imexamine.py::test_radial_profile_cumulative 418s /usr/lib/python3/dist-packages/imexam/imexamine.py:1097: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 418s xx = int(x) 418s 418s tests/test_imexamine.py::test_radial_profile 418s tests/test_imexamine.py::test_radial_profile_cumulative 418s /usr/lib/python3/dist-packages/imexam/imexamine.py:1098: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 418s yy = int(y) 418s 418s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 418s =========================== short test summary info ============================ 418s FAILED tests/test_imexamine.py::test_line_fit - ValueError: setting an array ... 418s FAILED tests/test_imexamine.py::test_column_fit - ValueError: setting an arra... 418s FAILED tests/test_imexamine.py::test_radial_profile - ValueError: setting an ... 418s FAILED tests/test_imexamine.py::test_radial_profile_cumulative - ValueError: ... 418s ======== 4 failed, 14 passed, 2 skipped, 1 xfailed, 5 warnings in 3.20s ======== 419s autopkgtest [09:41:48]: test command1: -----------------------] 426s command1 FAIL non-zero exit status 1 426s autopkgtest [09:41:55]: test command1: - - - - - - - - - - results - - - - - - - - - - 431s autopkgtest [09:42:00]: @@@@@@@@@@@@@@@@@@@@ summary 431s command1 FAIL non-zero exit status 1