0s autopkgtest [19:47:24]: starting date and time: 2024-11-03 19:47:24+0000
  0s autopkgtest [19:47:24]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [19:47:24]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rjdgsyrf/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:rhino --apt-upgrade htsjdk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=rhino/1.7.15-1 -- lxd -r lxd-armhf-10.145.243.142 lxd-armhf-10.145.243.142:autopkgtest/ubuntu/plucky/armhf
 51s autopkgtest [19:48:15]: testbed dpkg architecture: armhf
 53s autopkgtest [19:48:17]: testbed apt version: 2.9.8
 53s autopkgtest [19:48:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 60s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 61s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 61s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [177 kB]
 61s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [31.2 kB]
 61s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2268 kB]
 61s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [209 kB]
 61s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [1640 kB]
 61s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [23.9 kB]
 61s Fetched 4430 kB in 1s (3767 kB/s)
 62s Reading package lists...
 78s tee: /proc/self/fd/2: Permission denied
 99s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
 99s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 99s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 99s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
100s Reading package lists...
100s Reading package lists...
101s Building dependency tree...
101s Reading state information...
101s Calculating upgrade...
102s The following packages were automatically installed and are no longer required:
102s   libperl5.38t64 perl-modules-5.38
102s Use 'apt autoremove' to remove them.
102s The following NEW packages will be installed:
102s   libperl5.40 perl-modules-5.40
102s The following packages will be upgraded:
102s   base-files distro-info-data fwupd gcc-14-base info install-info iproute2
102s   libatomic1 libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3
102s   libblockdev-mdraid3 libblockdev-nvme3 libblockdev-part3 libblockdev-swap3
102s   libblockdev-utils3 libblockdev3 libdb5.3t64 libdw1t64 libelf1t64 libevdev2
102s   libftdi1-2 libfwupd2 libgcc-s1 libinih1 libkeyutils1 liblocale-gettext-perl
102s   libpipeline1 libsgutils2-1.46-2 libstdc++6 libtext-charwidth-perl
102s   libtext-iconv-perl motd-news-config nano perl perl-base python3-configobj
102s   python3-json-pointer python3-lazr.uri python3-zipp sg3-utils sg3-utils-udev
102s   vim-common vim-tiny xxd
102s 45 upgraded, 2 newly installed, 0 to remove and 0 not upgraded.
102s Need to get 19.6 MB of archives.
102s After this operation, 42.8 MB of additional disk space will be used.
102s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu2 [5274 B]
102s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu2 [68.6 kB]
102s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-6 [3214 kB]
103s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-6 [4140 kB]
103s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-6 [262 kB]
103s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-6 [1674 kB]
103s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB]
103s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB]
103s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B]
103s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB]
103s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-7ubuntu1 [7842 B]
103s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-7ubuntu1 [51.2 kB]
103s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-7ubuntu1 [711 kB]
103s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-7ubuntu1 [40.8 kB]
103s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB]
103s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B]
103s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB]
103s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB]
103s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB]
103s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B]
103s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB]
103s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB]
103s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB]
103s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB]
103s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB]
103s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB]
103s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB]
103s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB]
103s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB]
103s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.0-2 [17.4 kB]
103s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.0-2 [22.3 kB]
103s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.0-2 [34.3 kB]
103s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.0-2 [6552 B]
103s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.0-2 [13.4 kB]
103s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.0-2 [17.6 kB]
103s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.0-2 [16.5 kB]
103s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.0-2 [8942 B]
103s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.0-2 [44.2 kB]
103s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB]
103s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B]
103s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB]
103s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB]
103s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B]
103s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB]
103s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.20.2-1 [10.1 kB]
103s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB]
103s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B]
104s Preconfiguring packages ...
104s Fetched 19.6 MB in 2s (12.8 MB/s)
104s (Reading database ... 
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104s Preparing to unpack .../motd-news-config_13.5ubuntu2_all.deb ...
104s Unpacking motd-news-config (13.5ubuntu2) over (13.3ubuntu6) ...
104s Preparing to unpack .../base-files_13.5ubuntu2_armhf.deb ...
104s Unpacking base-files (13.5ubuntu2) over (13.3ubuntu6) ...
104s Setting up base-files (13.5ubuntu2) ...
104s Installing new version of config file /etc/issue ...
104s Installing new version of config file /etc/issue.net ...
104s Installing new version of config file /etc/lsb-release ...
105s motd-news.service is a disabled or a static unit not running, not starting it.
105s (Reading database ... 
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105s Preparing to unpack .../perl_5.40.0-6_armhf.deb ...
105s Unpacking perl (5.40.0-6) over (5.38.2-5) ...
105s Selecting previously unselected package perl-modules-5.40.
105s Preparing to unpack .../perl-modules-5.40_5.40.0-6_all.deb ...
105s Unpacking perl-modules-5.40 (5.40.0-6) ...
105s Selecting previously unselected package libperl5.40:armhf.
105s Preparing to unpack .../libperl5.40_5.40.0-6_armhf.deb ...
105s Unpacking libperl5.40:armhf (5.40.0-6) ...
105s Preparing to unpack .../perl-base_5.40.0-6_armhf.deb ...
105s Unpacking perl-base (5.40.0-6) over (5.38.2-5) ...
106s Setting up perl-base (5.40.0-6) ...
106s (Reading database ... 
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106s Preparing to unpack .../liblocale-gettext-perl_1.07-7build1_armhf.deb ...
106s Unpacking liblocale-gettext-perl (1.07-7build1) over (1.07-7) ...
106s Preparing to unpack .../libtext-iconv-perl_1.7-8build4_armhf.deb ...
106s Unpacking libtext-iconv-perl:armhf (1.7-8build4) over (1.7-8build3) ...
106s Preparing to unpack .../libtext-charwidth-perl_0.04-11build4_armhf.deb ...
106s Unpacking libtext-charwidth-perl:armhf (0.04-11build4) over (0.04-11build3) ...
106s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-9_armhf.deb ...
106s Unpacking libdb5.3t64:armhf (5.3.28+dfsg2-9) over (5.3.28+dfsg2-7) ...
106s Setting up libdb5.3t64:armhf (5.3.28+dfsg2-9) ...
106s (Reading database ... 
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106s Preparing to unpack .../libatomic1_14.2.0-7ubuntu1_armhf.deb ...
106s Unpacking libatomic1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ...
106s Preparing to unpack .../gcc-14-base_14.2.0-7ubuntu1_armhf.deb ...
106s Unpacking gcc-14-base:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ...
106s Setting up gcc-14-base:armhf (14.2.0-7ubuntu1) ...
106s (Reading database ... 
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106s Preparing to unpack .../libstdc++6_14.2.0-7ubuntu1_armhf.deb ...
106s Unpacking libstdc++6:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ...
106s Setting up libstdc++6:armhf (14.2.0-7ubuntu1) ...
106s (Reading database ... 
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106s Preparing to unpack .../libgcc-s1_14.2.0-7ubuntu1_armhf.deb ...
106s Unpacking libgcc-s1:armhf (14.2.0-7ubuntu1) over (14.2.0-4ubuntu2) ...
106s Setting up libgcc-s1:armhf (14.2.0-7ubuntu1) ...
106s (Reading database ... 
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106s Preparing to unpack .../install-info_7.1.1-1_armhf.deb ...
106s Unpacking install-info (7.1.1-1) over (7.1-3build2) ...
106s Setting up install-info (7.1.1-1) ...
107s (Reading database ... 
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107s Preparing to unpack .../00-distro-info-data_0.63_all.deb ...
107s Unpacking distro-info-data (0.63) over (0.62) ...
107s Preparing to unpack .../01-libdw1t64_0.192-4_armhf.deb ...
107s Unpacking libdw1t64:armhf (0.192-4) over (0.191-2) ...
107s Preparing to unpack .../02-libelf1t64_0.192-4_armhf.deb ...
107s Unpacking libelf1t64:armhf (0.192-4) over (0.191-2) ...
107s Preparing to unpack .../03-iproute2_6.10.0-2ubuntu1_armhf.deb ...
107s Unpacking iproute2 (6.10.0-2ubuntu1) over (6.10.0-2) ...
107s Preparing to unpack .../04-libkeyutils1_1.6.3-4ubuntu2_armhf.deb ...
107s Unpacking libkeyutils1:armhf (1.6.3-4ubuntu2) over (1.6.3-3build1) ...
107s Preparing to unpack .../05-vim-tiny_2%3a9.1.0777-1ubuntu1_armhf.deb ...
107s Unpacking vim-tiny (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ...
107s Preparing to unpack .../06-vim-common_2%3a9.1.0777-1ubuntu1_all.deb ...
107s Unpacking vim-common (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ...
107s Preparing to unpack .../07-xxd_2%3a9.1.0777-1ubuntu1_armhf.deb ...
107s Unpacking xxd (2:9.1.0777-1ubuntu1) over (2:9.1.0496-1ubuntu6) ...
107s Preparing to unpack .../08-info_7.1.1-1_armhf.deb ...
107s Unpacking info (7.1.1-1) over (7.1-3build2) ...
107s Preparing to unpack .../09-libevdev2_1.13.3+dfsg-1_armhf.deb ...
107s Unpacking libevdev2:armhf (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ...
107s Preparing to unpack .../10-libpipeline1_1.5.8-1_armhf.deb ...
107s Unpacking libpipeline1:armhf (1.5.8-1) over (1.5.7-2) ...
107s Preparing to unpack .../11-nano_8.2-1_armhf.deb ...
107s Unpacking nano (8.2-1) over (8.1-1) ...
107s Preparing to unpack .../12-libfwupd2_1.9.26-2_armhf.deb ...
107s Unpacking libfwupd2:armhf (1.9.26-2) over (1.9.24-1) ...
107s Preparing to unpack .../13-fwupd_1.9.26-2_armhf.deb ...
107s Unpacking fwupd (1.9.26-2) over (1.9.24-1) ...
108s Preparing to unpack .../14-libblockdev-utils3_3.2.0-2_armhf.deb ...
108s Unpacking libblockdev-utils3:armhf (3.2.0-2) over (3.1.1-2) ...
108s Preparing to unpack .../15-libblockdev-crypto3_3.2.0-2_armhf.deb ...
108s Unpacking libblockdev-crypto3:armhf (3.2.0-2) over (3.1.1-2) ...
108s Preparing to unpack .../16-libblockdev-fs3_3.2.0-2_armhf.deb ...
108s Unpacking libblockdev-fs3:armhf (3.2.0-2) over (3.1.1-2) ...
108s Preparing to unpack .../17-libblockdev-loop3_3.2.0-2_armhf.deb ...
108s Unpacking libblockdev-loop3:armhf (3.2.0-2) over (3.1.1-2) ...
108s Preparing to unpack .../18-libblockdev-mdraid3_3.2.0-2_armhf.deb ...
108s Unpacking libblockdev-mdraid3:armhf (3.2.0-2) over (3.1.1-2) ...
108s Preparing to unpack .../19-libblockdev-nvme3_3.2.0-2_armhf.deb ...
108s Unpacking libblockdev-nvme3:armhf (3.2.0-2) over (3.1.1-2) ...
108s Preparing to unpack .../20-libblockdev-part3_3.2.0-2_armhf.deb ...
108s Unpacking libblockdev-part3:armhf (3.2.0-2) over (3.1.1-2) ...
108s Preparing to unpack .../21-libblockdev-swap3_3.2.0-2_armhf.deb ...
108s Unpacking libblockdev-swap3:armhf (3.2.0-2) over (3.1.1-2) ...
108s Preparing to unpack .../22-libblockdev3_3.2.0-2_armhf.deb ...
108s Unpacking libblockdev3:armhf (3.2.0-2) over (3.1.1-2) ...
108s Preparing to unpack .../23-libftdi1-2_1.5-7_armhf.deb ...
108s Unpacking libftdi1-2:armhf (1.5-7) over (1.5-6build5) ...
108s Preparing to unpack .../24-libinih1_58-1ubuntu1_armhf.deb ...
108s Unpacking libinih1:armhf (58-1ubuntu1) over (55-1ubuntu2) ...
108s Preparing to unpack .../25-libsgutils2-1.46-2_1.46-3ubuntu5_armhf.deb ...
108s Unpacking libsgutils2-1.46-2:armhf (1.46-3ubuntu5) over (1.46-3ubuntu4) ...
108s Preparing to unpack .../26-python3-configobj_5.0.9-1_all.deb ...
108s Unpacking python3-configobj (5.0.9-1) over (5.0.8-3) ...
108s Preparing to unpack .../27-python3-json-pointer_2.4-2_all.deb ...
108s Unpacking python3-json-pointer (2.4-2) over (2.0-0ubuntu1) ...
108s Preparing to unpack .../28-python3-lazr.uri_1.0.6-4_all.deb ...
108s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ...
108s Preparing to unpack .../29-python3-zipp_3.20.2-1_all.deb ...
108s Unpacking python3-zipp (3.20.2-1) over (3.20.0-1) ...
108s Preparing to unpack .../30-sg3-utils_1.46-3ubuntu5_armhf.deb ...
108s Unpacking sg3-utils (1.46-3ubuntu5) over (1.46-3ubuntu4) ...
108s Preparing to unpack .../31-sg3-utils-udev_1.46-3ubuntu5_all.deb ...
108s Unpacking sg3-utils-udev (1.46-3ubuntu5) over (1.46-3ubuntu4) ...
108s Setting up libpipeline1:armhf (1.5.8-1) ...
108s Setting up motd-news-config (13.5ubuntu2) ...
108s Setting up libtext-iconv-perl:armhf (1.7-8build4) ...
108s Setting up libtext-charwidth-perl:armhf (0.04-11build4) ...
108s Setting up libkeyutils1:armhf (1.6.3-4ubuntu2) ...
108s Setting up distro-info-data (0.63) ...
108s Setting up libinih1:armhf (58-1ubuntu1) ...
108s Setting up libfwupd2:armhf (1.9.26-2) ...
108s Setting up libsgutils2-1.46-2:armhf (1.46-3ubuntu5) ...
108s Setting up python3-lazr.uri (1.0.6-4) ...
109s Setting up python3-zipp (3.20.2-1) ...
109s Setting up xxd (2:9.1.0777-1ubuntu1) ...
109s Setting up libelf1t64:armhf (0.192-4) ...
109s Setting up libdw1t64:armhf (0.192-4) ...
109s Setting up libftdi1-2:armhf (1.5-7) ...
109s Setting up python3-configobj (5.0.9-1) ...
109s Setting up vim-common (2:9.1.0777-1ubuntu1) ...
109s Installing new version of config file /etc/vim/vimrc ...
109s Setting up libblockdev-utils3:armhf (3.2.0-2) ...
109s Setting up libatomic1:armhf (14.2.0-7ubuntu1) ...
109s Setting up libblockdev-nvme3:armhf (3.2.0-2) ...
109s Setting up nano (8.2-1) ...
109s Setting up libblockdev-fs3:armhf (3.2.0-2) ...
109s Setting up perl-modules-5.40 (5.40.0-6) ...
109s Setting up python3-json-pointer (2.4-2) ...
109s Setting up libevdev2:armhf (1.13.3+dfsg-1) ...
109s Setting up fwupd (1.9.26-2) ...
109s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
109s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
109s fwupd.service is a disabled or a static unit not running, not starting it.
109s Setting up info (7.1.1-1) ...
109s Setting up liblocale-gettext-perl (1.07-7build1) ...
109s Setting up sg3-utils (1.46-3ubuntu5) ...
109s Setting up libblockdev-mdraid3:armhf (3.2.0-2) ...
109s Setting up libblockdev-crypto3:armhf (3.2.0-2) ...
109s Setting up libblockdev-swap3:armhf (3.2.0-2) ...
109s Setting up iproute2 (6.10.0-2ubuntu1) ...
110s Setting up libblockdev-loop3:armhf (3.2.0-2) ...
110s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ...
110s Setting up libblockdev3:armhf (3.2.0-2) ...
110s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ...
110s Setting up libblockdev-part3:armhf (3.2.0-2) ...
110s Setting up sg3-utils-udev (1.46-3ubuntu5) ...
110s update-initramfs: deferring update (trigger activated)
110s Setting up libperl5.40:armhf (5.40.0-6) ...
110s Setting up perl (5.40.0-6) ...
110s Processing triggers for dbus (1.14.10-4ubuntu5) ...
110s Processing triggers for install-info (7.1.1-1) ...
110s Processing triggers for initramfs-tools (0.142ubuntu34) ...
110s Processing triggers for libc-bin (2.40-1ubuntu3) ...
110s Processing triggers for man-db (2.12.1-3) ...
111s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-1ubuntu10) ...
111s update-initramfs: deferring update (trigger activated)
111s Processing triggers for initramfs-tools (0.142ubuntu34) ...
112s Reading package lists...
112s Building dependency tree...
112s Reading state information...
113s The following packages will be REMOVED:
113s   libperl5.38t64* perl-modules-5.38*
113s 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded.
113s After this operation, 41.6 MB disk space will be freed.
113s (Reading database ... 
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(Reading database ... 61462 files and directories currently installed.)
113s Removing libperl5.38t64:armhf (5.38.2-5) ...
113s Removing perl-modules-5.38 (5.38.2-5) ...
113s Processing triggers for man-db (2.12.1-3) ...
113s Processing triggers for libc-bin (2.40-1ubuntu3) ...
115s autopkgtest [19:49:19]: rebooting testbed after setup commands that affected boot
182s autopkgtest [19:50:26]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct  2 16:39:14 UTC 2
208s autopkgtest [19:50:52]: @@@@@@@@@@@@@@@@@@@@ apt-source htsjdk
223s Get:1 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (dsc) [2649 B]
223s Get:2 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (tar) [46.9 MB]
223s Get:3 http://ftpmaster.internal/ubuntu plucky/universe htsjdk 4.1.0+dfsg-2 (diff) [39.3 kB]
224s gpgv: Signature made Wed May 15 21:27:25 2024 UTC
224s gpgv:                using RSA key 33CB284313E90BD27DCB4523600316A6DC277476
224s gpgv: Can't check signature: No public key
224s dpkg-source: warning: cannot verify inline signature for ./htsjdk_4.1.0+dfsg-2.dsc: no acceptable signature found
225s autopkgtest [19:51:09]: testing package htsjdk version 4.1.0+dfsg-2
227s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
227s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
227s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
227s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
227s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
227s command1             SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
228s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
228s pilon-run-unit-test  SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
228s autopkgtest [19:51:12]: build not needed
232s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
232s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
232s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
232s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s command1             SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s pilon-run-unit-test  SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s autopkgtest [19:51:17]: @@@@@@@@@@@@@@@@@@@@ summary
233s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s command1             SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s pilon-run-unit-test  SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s command1             SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.
233s pilon-run-unit-test  SKIP Test lists explicitly supported architectures, but the current architecture armhf isn't listed.