0s autopkgtest [16:37:56]: starting date and time: 2024-11-13 16:37:56+0000
  0s autopkgtest [16:37:56]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [16:37:56]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hqj9w9u9/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade hdmf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.21 lxd-armhf-10.145.243.21:autopkgtest/ubuntu/plucky/armhf
 54s autopkgtest [16:38:50]: testbed dpkg architecture: armhf
 56s autopkgtest [16:38:52]: testbed apt version: 2.9.8
 56s autopkgtest [16:38:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 64s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
 64s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [950 kB]
 64s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [104 kB]
 64s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
 64s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [17.2 kB]
 64s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [104 kB]
 64s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [638 kB]
 65s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [17.2 kB]
 65s Fetched 1911 kB in 1s (1673 kB/s)
 65s Reading package lists...
 83s tee: /proc/self/fd/2: Permission denied
106s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
106s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
106s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
106s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
107s Reading package lists...
107s Reading package lists...
108s Building dependency tree...
108s Reading state information...
108s Calculating upgrade...
109s The following packages were automatically installed and are no longer required:
109s   libperl5.38t64 perl-modules-5.38 python3-netifaces
109s Use 'apt autoremove' to remove them.
109s The following NEW packages will be installed:
109s   libperl5.40 perl-modules-5.40 python3.13-gdbm systemd-cryptsetup
109s The following packages will be upgraded:
109s   apport apport-core-dump-handler base-files base-passwd bash-completion
109s   dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info
109s   install-info iproute2 libarchive13t64 libatomic1 libattr1
109s   libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3
109s   libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3
109s   libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libdb5.3t64
109s   libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 libevdev2
109s   libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 libgnutls30t64
109s   libgpgme11t64 libinih1 libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common
109s   libkeyutils1 libldap-common libldap2 liblocale-gettext-perl libmaxminddb0
109s   libmnl0 libnetfilter-conntrack3 libnetplan1 libnghttp2-14 libnspr4
109s   libnss-systemd libnvme1t64 libpam-systemd libpipeline1 libplymouth5
109s   libpng16-16t64 libpopt0 libpython3-stdlib libpython3.12-minimal
109s   libpython3.12-stdlib libsgutils2-1.46-2 libssh2-1t64 libstdc++6
109s   libsystemd-shared libsystemd0 libtext-charwidth-perl libtext-iconv-perl
109s   libtraceevent1 libtraceevent1-plugin libudev1 libudisks2-0 liburcu8t64
109s   libutempter0 libuv1t64 libx11-6 libx11-data libxau6 libxmlb2 mawk
109s   motd-news-config nano netplan-generator netplan.io openssh-client
109s   openssh-server openssh-sftp-server pci.ids perl perl-base plymouth
109s   plymouth-theme-ubuntu-text python3 python3-apport python3-certifi
109s   python3-cffi-backend python3-configobj python3-gdbm python3-gi python3-idna
109s   python3-jaraco.functools python3-json-pointer python3-jsonpatch
109s   python3-lazr.restfulclient python3-lazr.uri python3-minimal
109s   python3-more-itertools python3-netplan python3-oauthlib
109s   python3-problem-report python3-typeguard python3-urllib3 python3-wadllib
109s   python3-zipp python3.12 python3.12-gdbm python3.12-minimal sg3-utils
109s   sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv
109s   systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny xxd
109s 140 upgraded, 4 newly installed, 0 to remove and 0 not upgraded.
109s Need to get 45.4 MB of archives.
109s After this operation, 43.1 MB of additional disk space will be used.
109s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B]
109s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB]
109s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB]
109s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB]
110s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB]
110s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB]
110s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB]
110s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB]
110s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB]
110s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B]
110s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB]
110s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB]
110s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB]
110s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB]
110s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB]
110s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB]
110s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB]
110s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB]
110s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB]
110s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB]
110s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB]
110s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB]
110s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB]
110s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB]
110s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB]
110s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB]
110s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB]
110s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB]
110s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB]
110s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB]
110s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB]
110s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB]
110s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB]
110s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB]
110s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB]
110s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB]
110s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB]
110s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB]
110s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB]
110s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB]
110s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B]
111s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB]
111s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB]
111s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB]
111s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB]
111s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf libgnutls30t64 armhf 3.8.8-2ubuntu1 [955 kB]
111s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB]
111s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB]
111s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB]
111s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B]
111s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB]
111s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB]
111s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB]
111s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB]
111s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB]
111s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB]
111s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB]
111s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B]
111s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB]
111s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB]
111s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB]
111s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB]
111s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB]
111s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB]
111s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB]
111s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB]
111s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB]
111s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB]
111s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB]
111s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B]
111s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB]
111s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB]
111s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB]
111s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB]
111s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB]
111s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB]
111s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB]
111s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB]
111s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB]
111s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB]
111s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB]
111s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB]
111s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB]
111s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB]
111s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B]
111s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB]
111s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB]
111s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B]
111s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB]
111s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB]
111s Get:91 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB]
111s Get:92 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B]
111s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB]
111s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB]
111s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB]
111s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB]
111s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB]
111s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB]
111s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB]
111s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-3 [5586 B]
111s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-3 [61.7 kB]
111s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB]
112s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB]
112s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB]
112s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB]
112s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB]
112s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB]
112s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B]
112s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB]
112s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B]
112s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB]
112s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB]
112s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB]
112s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB]
112s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B]
112s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB]
112s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB]
112s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B]
112s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB]
112s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB]
112s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB]
112s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB]
112s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB]
112s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB]
112s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB]
112s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf libutempter0 armhf 1.2.1-4 [9062 B]
112s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B]
112s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB]
112s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB]
112s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB]
112s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB]
112s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B]
112s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB]
112s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB]
112s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB]
112s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB]
112s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB]
112s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB]
112s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB]
112s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB]
112s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB]
112s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B]
112s Get:143 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB]
112s Get:144 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB]
113s Preconfiguring packages ...
113s Fetched 45.4 MB in 4s (12.1 MB/s)
113s (Reading database ... 
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125s Setting up libpipeline1:armhf (1.5.8-1) ...
125s Setting up motd-news-config (13.5ubuntu3) ...
125s Setting up libtext-iconv-perl:armhf (1.7-8build4) ...
125s Setting up libtext-charwidth-perl:armhf (0.04-11build4) ...
125s Setting up liburcu8t64:armhf (0.14.1-1) ...
125s Setting up libxau6:armhf (1:1.0.11-1) ...
125s Setting up libkeyutils1:armhf (1.6.3-4ubuntu2) ...
125s Setting up pci.ids (0.0~2024.10.24-1) ...
125s Setting up distro-info-data (0.63) ...
125s Setting up libfastjson4:armhf (1.2304.0-2) ...
125s Setting up libinih1:armhf (58-1ubuntu1) ...
125s Setting up libmaxminddb0:armhf (1.11.0-1) ...
125s Setting up python3.12-gdbm (3.12.7-3) ...
125s Setting up libxmlb2:armhf (0.3.21-1) ...
125s Setting up libedit2:armhf (3.1-20240808-1) ...
125s Setting up libuv1t64:armhf (1.48.0-7) ...
125s Setting up libpython3.12-minimal:armhf (3.12.7-3) ...
125s Setting up libnghttp2-14:armhf (1.64.0-1) ...
125s Setting up libsgutils2-1.46-2:armhf (1.46-3ubuntu5) ...
125s Setting up libnetplan1:armhf (1.1.1-1) ...
125s Setting up libldap-common (2.6.8+dfsg-1~exp4ubuntu3) ...
125s Setting up usbutils (1:018-1) ...
125s Setting up xxd (2:9.1.0777-1ubuntu1) ...
125s Setting up libelf1t64:armhf (0.192-4) ...
125s Setting up libdw1t64:armhf (0.192-4) ...
125s Setting up tzdata (2024b-1ubuntu2) ...
125s 
125s Current default time zone: 'Etc/UTC'
125s Local time is now:      Wed Nov 13 16:40:01 UTC 2024.
125s Universal Time is now:  Wed Nov 13 16:40:01 UTC 2024.
125s Run 'dpkg-reconfigure tzdata' if you wish to change it.
125s 
125s Setting up libftdi1-2:armhf (1.5-7) ...
125s Setting up libflashrom1:armhf (1.4.0-3ubuntu1) ...
125s Setting up vim-common (2:9.1.0777-1ubuntu1) ...
125s Installing new version of config file /etc/vim/vimrc ...
125s Setting up libx11-data (2:1.8.10-2) ...
125s Setting up libnspr4:armhf (2:4.35-1.1ubuntu2) ...
125s Setting up bash-completion (1:2.14.0-2) ...
125s Setting up libbytesize-common (2.11-1ubuntu1) ...
125s Setting up libblockdev-utils3:armhf (3.2.1-1) ...
125s Setting up libpng16-16t64:armhf (1.6.44-2) ...
125s Setting up libmnl0:armhf (1.0.5-3) ...
125s Setting up libatomic1:armhf (14.2.0-8ubuntu1) ...
125s Setting up libsystemd-shared:armhf (256.5-2ubuntu4) ...
125s Setting up dhcpcd-base (1:10.1.0-2) ...
125s Setting up libutempter0:armhf (1.2.1-4) ...
125s Setting up nano (8.2-1) ...
125s Setting up libblockdev-fs3:armhf (3.2.1-1) ...
125s Setting up perl-modules-5.40 (5.40.0-7) ...
125s Setting up libnetfilter-conntrack3:armhf (1.1.0-1) ...
125s Setting up libtraceevent1:armhf (1:1.8.3-1ubuntu1) ...
125s Setting up libx11-6:armhf (2:1.8.10-2) ...
125s Setting up libjson-glib-1.0-common (1.10.0+ds-3) ...
125s Setting up mawk (1.3.4.20240905-1) ...
125s Setting up libbytesize1:armhf (2.11-1ubuntu1) ...
125s Setting up libgpgme11t64:armhf (1.23.2-5ubuntu4) ...
125s Setting up libssh2-1t64:armhf (1.11.1-1) ...
125s Setting up libdrm-common (2.4.123-1) ...
125s Setting up libarchive13t64:armhf (3.7.4-1.1) ...
125s Setting up libjson-c5:armhf (0.18+ds-1) ...
125s Setting up libevdev2:armhf (1.13.3+dfsg-1) ...
125s Setting up libldap2:armhf (2.6.8+dfsg-1~exp4ubuntu3) ...
125s Setting up info (7.1.1-1) ...
125s Setting up liblocale-gettext-perl (1.07-7build1) ...
125s Setting up libbpf1:armhf (1:1.5.0-1) ...
125s Setting up libudisks2-0:armhf (2.10.1-11ubuntu1) ...
125s Setting up python3.13-gdbm (3.13.0-2) ...
125s Setting up libpopt0:armhf (1.19+dfsg-2) ...
125s Setting up sg3-utils (1.46-3ubuntu5) ...
125s Setting up python3.12-minimal (3.12.7-3) ...
126s Setting up libpython3.12-stdlib:armhf (3.12.7-3) ...
126s Setting up libblockdev-mdraid3:armhf (3.2.1-1) ...
126s Setting up libblockdev-crypto3:armhf (3.2.1-1) ...
126s Setting up libblockdev-swap3:armhf (3.2.1-1) ...
126s Setting up iproute2 (6.10.0-2ubuntu1) ...
126s Setting up openssh-client (1:9.7p1-7ubuntu5) ...
126s Setting up python3.12 (3.12.7-3) ...
127s Setting up libblockdev-loop3:armhf (3.2.1-1) ...
127s Setting up systemd (256.5-2ubuntu4) ...
127s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring.
127s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'.
127s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring.
128s Setting up vim-tiny (2:9.1.0777-1ubuntu1) ...
128s Setting up libblockdev3:armhf (3.2.1-1) ...
128s Installing new version of config file /etc/libblockdev/3/conf.d/00-default.cfg ...
128s Setting up libjson-glib-1.0-0:armhf (1.10.0+ds-3) ...
128s Setting up libblockdev-part3:armhf (3.2.1-1) ...
128s Setting up sg3-utils-udev (1.46-3ubuntu5) ...
128s update-initramfs: deferring update (trigger activated)
128s Setting up libperl5.40:armhf (5.40.0-7) ...
128s Setting up perl (5.40.0-7) ...
128s Setting up systemd-cryptsetup (256.5-2ubuntu4) ...
128s Setting up libnvme1t64 (1.11-1) ...
128s Setting up systemd-timesyncd (256.5-2ubuntu4) ...
129s systemd-time-wait-sync.service is a disabled or a static unit not running, not starting it.
129s Setting up udev (256.5-2ubuntu4) ...
129s Setting up libdpkg-perl (1.22.11ubuntu3) ...
129s Setting up libblockdev-nvme3:armhf (3.2.1-1) ...
129s Setting up libdrm2:armhf (2.4.123-1) ...
129s Setting up libtraceevent1-plugin:armhf (1:1.8.3-1ubuntu1) ...
129s Setting up libplymouth5:armhf (24.004.60-1ubuntu11) ...
129s Setting up netplan-generator (1.1.1-1) ...
129s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
129s Setting up libpython3-stdlib:armhf (3.12.7-1) ...
129s Setting up systemd-resolved (256.5-2ubuntu4) ...
130s Setting up openssh-sftp-server (1:9.7p1-7ubuntu5) ...
130s Setting up udisks2 (2.10.1-11ubuntu1) ...
130s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied
130s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied
130s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied
130s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied
130s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied
130s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied
130s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied
130s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied
130s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied
130s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied
130s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied
130s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied
130s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied
130s Setting up systemd-sysv (256.5-2ubuntu4) ...
130s Setting up openssh-server (1:9.7p1-7ubuntu5) ...
131s Setting up plymouth (24.004.60-1ubuntu11) ...
131s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
132s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
132s Setting up libfwupd2:armhf (1.9.26-2) ...
132s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ...
132s Setting up python3 (3.12.7-1) ...
132s Setting up python3-zipp (3.21.0-1) ...
132s Setting up dpkg-dev (1.22.11ubuntu3) ...
132s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ...
132s update-initramfs: deferring update (trigger activated)
132s Setting up python3-oauthlib (3.2.2-2) ...
132s Setting up python3-configobj (5.0.9-1) ...
133s Setting up python3-certifi (2024.8.30+dfsg-1) ...
133s Setting up python3-gi (3.50.0-3) ...
133s Setting up python3-idna (3.8-2) ...
133s Setting up python3-urllib3 (2.0.7-2ubuntu0.1) ...
133s Setting up python3-json-pointer (2.4-2) ...
133s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ...
133s Setting up fwupd (1.9.26-2) ...
134s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
134s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
134s fwupd.service is a disabled or a static unit not running, not starting it.
134s Setting up python3-cffi-backend:armhf (1.17.1-2) ...
134s Setting up python3-more-itertools (10.5.0-1) ...
134s Setting up python3-jaraco.functools (4.1.0-1) ...
134s Setting up python3-gdbm:armhf (3.12.7-1) ...
134s Setting up python3-problem-report (2.30.0-0ubuntu5) ...
134s Setting up ssh-import-id (5.11-0ubuntu3) ...
134s Setting up python3-jsonpatch (1.32-4) ...
135s Setting up python3-typeguard (4.4.1-1) ...
135s Setting up ufw (0.36.2-8) ...
136s Setting up python3-lazr.uri (1.0.6-4) ...
136s Setting up python3-apport (2.30.0-0ubuntu5) ...
136s Setting up python3-wadllib (2.0.0-1) ...
136s Setting up python3-netplan (1.1.1-1) ...
136s Setting up python3-lazr.restfulclient (0.14.6-2) ...
136s Setting up netplan.io (1.1.1-1) ...
136s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ...
137s Setting up apport (2.30.0-0ubuntu5) ...
137s Installing new version of config file /etc/apport/crashdb.conf ...
138s apport-autoreport.service is a disabled or a static unit not running, not starting it.
138s Processing triggers for dbus (1.14.10-4ubuntu5) ...
138s Processing triggers for shared-mime-info (2.4-5) ...
138s Processing triggers for install-info (7.1.1-1) ...
138s Processing triggers for initramfs-tools (0.142ubuntu34) ...
138s Processing triggers for libc-bin (2.40-1ubuntu3) ...
138s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ...
138s Processing triggers for man-db (2.12.1-3) ...
140s Reading package lists...
140s Building dependency tree...
140s Reading state information...
141s The following packages will be REMOVED:
141s   libperl5.38t64* perl-modules-5.38* python3-netifaces*
141s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
141s After this operation, 41.7 MB disk space will be freed.
141s (Reading database ... 
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(Reading database ... 61506 files and directories currently installed.)
141s Removing libperl5.38t64:armhf (5.38.2-5) ...
141s Removing perl-modules-5.38 (5.38.2-5) ...
141s Removing python3-netifaces:armhf (0.11.0-2build3) ...
141s Processing triggers for man-db (2.12.1-3) ...
142s Processing triggers for libc-bin (2.40-1ubuntu3) ...
144s autopkgtest [16:40:20]: rebooting testbed after setup commands that affected boot
214s autopkgtest [16:41:30]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct  2 16:39:14 UTC 2
243s autopkgtest [16:41:59]: @@@@@@@@@@@@@@@@@@@@ apt-source hdmf
254s Get:1 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (dsc) [2399 B]
254s Get:2 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (tar) [15.8 MB]
254s Get:3 http://ftpmaster.internal/ubuntu plucky/universe hdmf 3.14.5-1 (diff) [6460 B]
254s gpgv: Signature made Sat Nov  2 15:04:50 2024 UTC
254s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
254s gpgv:                issuer "emollier@debian.org"
254s gpgv: Can't check signature: No public key
254s dpkg-source: warning: cannot verify inline signature for ./hdmf_3.14.5-1.dsc: no acceptable signature found
255s autopkgtest [16:42:11]: testing package hdmf version 3.14.5-1
258s autopkgtest [16:42:14]: build not needed
264s autopkgtest [16:42:20]: test run-unit-test: preparing testbed
274s Reading package lists...
275s Building dependency tree...
275s Reading state information...
275s Starting pkgProblemResolver with broken count: 0
275s Starting 2 pkgProblemResolver with broken count: 0
275s Done
276s The following additional packages will be installed:
276s   libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3
276s   liblbfgsb0 liblzf1 libpython3.13-minimal libpython3.13-stdlib libsz2
276s   python3-all python3-dateutil python3-decorator python3-h5py
276s   python3-h5py-serial python3-hdmf python3-numpy python3-pandas
276s   python3-pandas-lib python3-ruamel.yaml python3-ruamel.yaml.clib
276s   python3-scipy python3-six python3-tz python3.13 python3.13-minimal
276s Suggested packages:
276s   python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest
276s   python-pandas-doc python3-statsmodels python-scipy-doc python3.13-venv
276s   python3.13-doc binfmt-support
276s Recommended packages:
276s   python3-matplotlib python3-bottleneck python3-numexpr python3-odf
276s   python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables
276s   g++ | c++-compiler python3-pil
276s The following NEW packages will be installed:
276s   autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64
276s   libhdf5-hl-100t64 liblapack3 liblbfgsb0 liblzf1 libpython3.13-minimal
276s   libpython3.13-stdlib libsz2 python3-all python3-dateutil python3-decorator
276s   python3-h5py python3-h5py-serial python3-hdmf python3-numpy python3-pandas
276s   python3-pandas-lib python3-ruamel.yaml python3-ruamel.yaml.clib
276s   python3-scipy python3-six python3-tz python3.13 python3.13-minimal
276s 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded.
276s Need to get 38.9 MB/38.9 MB of archives.
276s After this operation, 144 MB of additional disk space will be used.
276s Get:1 /tmp/autopkgtest.84YxaI/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [716 B]
276s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-minimal armhf 3.13.0-2 [866 kB]
277s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-minimal armhf 3.13.0-2 [1854 kB]
277s Get:4 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB]
277s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB]
277s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB]
277s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B]
277s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB]
277s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB]
277s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB]
277s Get:11 http://ftpmaster.internal/ubuntu plucky/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB]
277s Get:12 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B]
277s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1972 kB]
277s Get:14 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13 armhf 3.13.0-2 [719 kB]
277s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-all armhf 3.12.7-1 [890 B]
277s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3-six all 1.16.0-7 [13.1 kB]
277s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf python3-dateutil all 2.9.0-2 [80.3 kB]
277s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3-decorator all 5.1.1-5 [10.1 kB]
277s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11build1 [3570 kB]
277s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py-serial armhf 3.11.0-5ubuntu1 [1061 kB]
277s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-h5py all 3.11.0-5ubuntu1 [7974 B]
277s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf python3-tz all 2024.1-2 [31.4 kB]
277s Get:23 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas-lib armhf 2.2.3+dfsg-5 [4728 kB]
277s Get:24 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pandas all 2.2.3+dfsg-5 [3112 kB]
278s Get:25 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-scipy armhf 1.13.1-5 [16.4 MB]
278s Get:26 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ruamel.yaml.clib armhf 0.2.8+ds-2 [125 kB]
278s Get:27 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-ruamel.yaml all 0.18.6+ds-3 [126 kB]
278s Get:28 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-hdmf all 3.14.5-1 [235 kB]
279s Fetched 38.9 MB in 2s (19.2 MB/s)
279s Selecting previously unselected package libpython3.13-minimal:armhf.
279s (Reading database ... 
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(Reading database ... 59566 files and directories currently installed.)
279s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_armhf.deb ...
279s Unpacking libpython3.13-minimal:armhf (3.13.0-2) ...
279s Selecting previously unselected package python3.13-minimal.
279s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_armhf.deb ...
279s Unpacking python3.13-minimal (3.13.0-2) ...
279s Selecting previously unselected package libaec0:armhf.
279s Preparing to unpack .../02-libaec0_1.1.3-1_armhf.deb ...
279s Unpacking libaec0:armhf (1.1.3-1) ...
279s Selecting previously unselected package libblas3:armhf.
279s Preparing to unpack .../03-libblas3_3.12.0-3build2_armhf.deb ...
279s Unpacking libblas3:armhf (3.12.0-3build2) ...
279s Selecting previously unselected package libgfortran5:armhf.
279s Preparing to unpack .../04-libgfortran5_14.2.0-8ubuntu1_armhf.deb ...
279s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ...
279s Selecting previously unselected package libsz2:armhf.
279s Preparing to unpack .../05-libsz2_1.1.3-1_armhf.deb ...
279s Unpacking libsz2:armhf (1.1.3-1) ...
279s Selecting previously unselected package libhdf5-103-1t64:armhf.
279s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ...
279s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ...
279s Selecting previously unselected package libhdf5-hl-100t64:armhf.
279s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ...
279s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ...
279s Selecting previously unselected package liblapack3:armhf.
279s Preparing to unpack .../08-liblapack3_3.12.0-3build2_armhf.deb ...
279s Unpacking liblapack3:armhf (3.12.0-3build2) ...
279s Selecting previously unselected package liblbfgsb0:armhf.
279s Preparing to unpack .../09-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ...
279s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ...
279s Selecting previously unselected package liblzf1:armhf.
279s Preparing to unpack .../10-liblzf1_3.6-4_armhf.deb ...
279s Unpacking liblzf1:armhf (3.6-4) ...
279s Selecting previously unselected package libpython3.13-stdlib:armhf.
279s Preparing to unpack .../11-libpython3.13-stdlib_3.13.0-2_armhf.deb ...
279s Unpacking libpython3.13-stdlib:armhf (3.13.0-2) ...
279s Selecting previously unselected package python3.13.
279s Preparing to unpack .../12-python3.13_3.13.0-2_armhf.deb ...
279s Unpacking python3.13 (3.13.0-2) ...
279s Selecting previously unselected package python3-all.
279s Preparing to unpack .../13-python3-all_3.12.7-1_armhf.deb ...
279s Unpacking python3-all (3.12.7-1) ...
279s Selecting previously unselected package python3-six.
279s Preparing to unpack .../14-python3-six_1.16.0-7_all.deb ...
279s Unpacking python3-six (1.16.0-7) ...
279s Selecting previously unselected package python3-dateutil.
279s Preparing to unpack .../15-python3-dateutil_2.9.0-2_all.deb ...
279s Unpacking python3-dateutil (2.9.0-2) ...
279s Selecting previously unselected package python3-decorator.
279s Preparing to unpack .../16-python3-decorator_5.1.1-5_all.deb ...
279s Unpacking python3-decorator (5.1.1-5) ...
279s Selecting previously unselected package python3-numpy.
279s Preparing to unpack .../17-python3-numpy_1%3a1.26.4+ds-11build1_armhf.deb ...
279s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
280s Selecting previously unselected package python3-h5py-serial.
280s Preparing to unpack .../18-python3-h5py-serial_3.11.0-5ubuntu1_armhf.deb ...
280s Unpacking python3-h5py-serial (3.11.0-5ubuntu1) ...
280s Selecting previously unselected package python3-h5py.
280s Preparing to unpack .../19-python3-h5py_3.11.0-5ubuntu1_all.deb ...
280s Unpacking python3-h5py (3.11.0-5ubuntu1) ...
280s Selecting previously unselected package python3-tz.
280s Preparing to unpack .../20-python3-tz_2024.1-2_all.deb ...
280s Unpacking python3-tz (2024.1-2) ...
280s Selecting previously unselected package python3-pandas-lib:armhf.
280s Preparing to unpack .../21-python3-pandas-lib_2.2.3+dfsg-5_armhf.deb ...
280s Unpacking python3-pandas-lib:armhf (2.2.3+dfsg-5) ...
280s Selecting previously unselected package python3-pandas.
280s Preparing to unpack .../22-python3-pandas_2.2.3+dfsg-5_all.deb ...
280s Unpacking python3-pandas (2.2.3+dfsg-5) ...
280s Selecting previously unselected package python3-scipy.
280s Preparing to unpack .../23-python3-scipy_1.13.1-5_armhf.deb ...
280s Unpacking python3-scipy (1.13.1-5) ...
281s Selecting previously unselected package python3-ruamel.yaml.clib:armhf.
281s Preparing to unpack .../24-python3-ruamel.yaml.clib_0.2.8+ds-2_armhf.deb ...
281s Unpacking python3-ruamel.yaml.clib:armhf (0.2.8+ds-2) ...
281s Selecting previously unselected package python3-ruamel.yaml.
281s Preparing to unpack .../25-python3-ruamel.yaml_0.18.6+ds-3_all.deb ...
281s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ...
281s Selecting previously unselected package python3-hdmf.
281s Preparing to unpack .../26-python3-hdmf_3.14.5-1_all.deb ...
281s Unpacking python3-hdmf (3.14.5-1) ...
281s Selecting previously unselected package autopkgtest-satdep.
281s Preparing to unpack .../27-1-autopkgtest-satdep.deb ...
281s Unpacking autopkgtest-satdep (0) ...
281s Setting up python3-ruamel.yaml.clib:armhf (0.2.8+ds-2) ...
281s Setting up libaec0:armhf (1.1.3-1) ...
281s Setting up python3-tz (2024.1-2) ...
281s Setting up python3-six (1.16.0-7) ...
282s Setting up libpython3.13-minimal:armhf (3.13.0-2) ...
282s Setting up python3-decorator (5.1.1-5) ...
282s Setting up libblas3:armhf (3.12.0-3build2) ...
282s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
282s Setting up liblzf1:armhf (3.6-4) ...
282s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ...
282s Setting up python3-ruamel.yaml (0.18.6+ds-3) ...
282s Setting up python3.13-minimal (3.13.0-2) ...
283s Setting up python3-dateutil (2.9.0-2) ...
284s Setting up libpython3.13-stdlib:armhf (3.13.0-2) ...
284s Setting up libsz2:armhf (1.1.3-1) ...
284s Setting up liblapack3:armhf (3.12.0-3build2) ...
284s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
284s Setting up python3.13 (3.13.0-2) ...
285s Setting up python3-all (3.12.7-1) ...
285s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
289s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ...
289s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ...
289s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ...
289s Setting up python3-scipy (1.13.1-5) ...
300s Setting up python3-pandas-lib:armhf (2.2.3+dfsg-5) ...
300s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ...
301s Setting up python3-pandas (2.2.3+dfsg-5) ...
313s Setting up python3-h5py (3.11.0-5ubuntu1) ...
313s Setting up python3-hdmf (3.14.5-1) ...
313s Setting up autopkgtest-satdep (0) ...
313s Processing triggers for systemd (256.5-2ubuntu4) ...
313s Processing triggers for man-db (2.12.1-3) ...
314s Processing triggers for libc-bin (2.40-1ubuntu3) ...
328s (Reading database ... 64781 files and directories currently installed.)
328s Removing autopkgtest-satdep (0) ...
334s autopkgtest [16:43:30]: test run-unit-test: [-----------------------
336s Testing with python3.13 in /tmp/autopkgtest.84YxaI/autopkgtest_tmp:
337s tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0) ... ERROR
337s tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build) ... ERROR
337s tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime) ... ERROR
337s tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity) ... ERROR
337s tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder) ... ERROR
337s tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator) ... ERROR
337s tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype) ... ERROR
337s tests.unit.build_tests.test_io_manager (unittest.loader._FailedTest.tests.unit.build_tests.test_io_manager) ... ERROR
337s tests.unit.build_tests.test_io_map (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map) ... ERROR
337s tests.unit.build_tests.test_io_map_data (unittest.loader._FailedTest.tests.unit.build_tests.test_io_map_data) ... ERROR
337s tests.unit.common.test_alignedtable (unittest.loader._FailedTest.tests.unit.common.test_alignedtable) ... ERROR
337s tests.unit.common.test_common (unittest.loader._FailedTest.tests.unit.common.test_common) ... ERROR
337s tests.unit.common.test_common_io (unittest.loader._FailedTest.tests.unit.common.test_common_io) ... ERROR
337s tests.unit.common.test_generate_table (unittest.loader._FailedTest.tests.unit.common.test_generate_table) ... ERROR
337s tests.unit.common.test_linkedtables (unittest.loader._FailedTest.tests.unit.common.test_linkedtables) ... ERROR
337s tests.unit.common.test_multi (unittest.loader._FailedTest.tests.unit.common.test_multi) ... ERROR
337s tests.unit.common.test_resources (unittest.loader._FailedTest.tests.unit.common.test_resources) ... ERROR
337s tests.unit.common.test_sparse (unittest.loader._FailedTest.tests.unit.common.test_sparse) ... ERROR
337s tests.unit.common.test_table (unittest.loader._FailedTest.tests.unit.common.test_table) ... ERROR
337s tests.unit.spec_tests.test_attribute_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_attribute_spec) ... ERROR
337s tests.unit.spec_tests.test_dataset_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dataset_spec) ... ERROR
337s tests.unit.spec_tests.test_dtype_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_dtype_spec) ... ERROR
337s tests.unit.spec_tests.test_group_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_group_spec) ... ERROR
337s tests.unit.spec_tests.test_link_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_link_spec) ... ERROR
337s tests.unit.spec_tests.test_load_namespace (unittest.loader._FailedTest.tests.unit.spec_tests.test_load_namespace) ... ERROR
337s tests.unit.spec_tests.test_ref_spec (unittest.loader._FailedTest.tests.unit.spec_tests.test_ref_spec) ... ERROR
337s tests.unit.spec_tests.test_spec_catalog (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_catalog) ... ERROR
337s tests.unit.spec_tests.test_spec_write (unittest.loader._FailedTest.tests.unit.spec_tests.test_spec_write) ... ERROR
337s tests.unit.test_container (unittest.loader._FailedTest.tests.unit.test_container) ... ERROR
337s tests.unit.test_io_hdf5 (unittest.loader._FailedTest.tests.unit.test_io_hdf5) ... ERROR
337s tests.unit.test_io_hdf5_h5tools (unittest.loader._FailedTest.tests.unit.test_io_hdf5_h5tools) ... ERROR
337s tests.unit.test_io_hdf5_streaming (unittest.loader._FailedTest.tests.unit.test_io_hdf5_streaming) ... ERROR
337s tests.unit.test_multicontainerinterface (unittest.loader._FailedTest.tests.unit.test_multicontainerinterface) ... ERROR
337s tests.unit.test_query (unittest.loader._FailedTest.tests.unit.test_query) ... ERROR
337s tests.unit.test_table (unittest.loader._FailedTest.tests.unit.test_table) ... ERROR
337s tests.unit.test_term_set (unittest.loader._FailedTest.tests.unit.test_term_set) ... ERROR
337s tests.unit.utils_test.test_core_DataChunk (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunk) ... ERROR
337s tests.unit.utils_test.test_core_DataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataChunkIterator) ... ERROR
337s tests.unit.utils_test.test_core_DataIO (unittest.loader._FailedTest.tests.unit.utils_test.test_core_DataIO) ... ERROR
337s tests.unit.utils_test.test_core_GenericDataChunkIterator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_GenericDataChunkIterator) ... ERROR
337s tests.unit.utils_test.test_core_ShapeValidator (unittest.loader._FailedTest.tests.unit.utils_test.test_core_ShapeValidator) ... ERROR
337s tests.unit.utils_test.test_data_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_data_utils) ... ERROR
337s tests.unit.utils_test.test_docval (unittest.loader._FailedTest.tests.unit.utils_test.test_docval) ... ERROR
337s tests.unit.utils_test.test_labelleddict (unittest.loader._FailedTest.tests.unit.utils_test.test_labelleddict) ... ERROR
337s tests.unit.utils_test.test_utils (unittest.loader._FailedTest.tests.unit.utils_test.test_utils) ... ERROR
337s tests.unit.validator_tests.test_errors (unittest.loader._FailedTest.tests.unit.validator_tests.test_errors) ... ERROR
337s tests.unit.validator_tests.test_validate (unittest.loader._FailedTest.tests.unit.validator_tests.test_validate) ... ERROR
337s 
337s ======================================================================
337s ERROR: tests.unit.back_compat_tests.test_1_1_0 (unittest.loader._FailedTest.tests.unit.back_compat_tests.test_1_1_0)
337s ----------------------------------------------------------------------
337s ImportError: Failed to import test module: tests.unit.back_compat_tests.test_1_1_0
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in <module>
337s     from . import multiarray
337s   File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in <module>
337s     from . import overrides
337s   File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in <module>
337s     from numpy.core._multiarray_umath import (
337s         add_docstring,  _get_implementing_args, _ArrayFunctionDispatcher)
337s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
337s 
337s During handling of the above exception, another exception occurred:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in <module>
337s     from numpy.__config__ import show as show_config
337s   File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in <module>
337s     from numpy.core._multiarray_umath import (
337s     ...<3 lines>...
337s     )
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in <module>
337s     raise ImportError(msg)
337s ImportError: 
337s 
337s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
337s 
337s Importing the numpy C-extensions failed. This error can happen for
337s many reasons, often due to issues with your setup or how NumPy was
337s installed.
337s 
337s We have compiled some common reasons and troubleshooting tips at:
337s 
337s     https://numpy.org/devdocs/user/troubleshooting-importerror.html
337s 
337s Please note and check the following:
337s 
337s   * The Python version is: Python3.13 from "/usr/bin/python3.13"
337s   * The NumPy version is: "1.26.4"
337s 
337s and make sure that they are the versions you expect.
337s Please carefully study the documentation linked above for further help.
337s 
337s Original error was: No module named 'numpy.core._multiarray_umath'
337s 
337s 
337s The above exception was the direct cause of the following exception:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path
337s     module = self._get_module_from_name(name)
337s   File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name
337s     __import__(name)
337s     ~~~~~~~~~~^^^^^^
337s   File "/tmp/autopkgtest.84YxaI/autopkgtest_tmp/tests/unit/back_compat_tests/test_1_1_0.py", line 4, in <module>
337s     from hdmf.backends.hdf5.h5tools import HDF5IO
337s   File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in <module>
337s     from . import query
337s   File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in <module>
337s     import numpy as np
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in <module>
337s     raise ImportError(msg) from e
337s ImportError: Error importing numpy: you should not try to import numpy from
337s         its source directory; please exit the numpy source tree, and relaunch
337s         your python interpreter from there.
337s 
337s 
337s ======================================================================
337s ERROR: tests.unit.build_tests.mapper_tests.test_build (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build)
337s ----------------------------------------------------------------------
337s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in <module>
337s     from . import multiarray
337s   File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in <module>
337s     from . import overrides
337s   File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in <module>
337s     from numpy.core._multiarray_umath import (
337s         add_docstring,  _get_implementing_args, _ArrayFunctionDispatcher)
337s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
337s 
337s During handling of the above exception, another exception occurred:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in <module>
337s     from numpy.__config__ import show as show_config
337s   File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in <module>
337s     from numpy.core._multiarray_umath import (
337s     ...<3 lines>...
337s     )
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in <module>
337s     raise ImportError(msg)
337s ImportError: 
337s 
337s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
337s 
337s Importing the numpy C-extensions failed. This error can happen for
337s many reasons, often due to issues with your setup or how NumPy was
337s installed.
337s 
337s We have compiled some common reasons and troubleshooting tips at:
337s 
337s     https://numpy.org/devdocs/user/troubleshooting-importerror.html
337s 
337s Please note and check the following:
337s 
337s   * The Python version is: Python3.13 from "/usr/bin/python3.13"
337s   * The NumPy version is: "1.26.4"
337s 
337s and make sure that they are the versions you expect.
337s Please carefully study the documentation linked above for further help.
337s 
337s Original error was: No module named 'numpy.core._multiarray_umath'
337s 
337s 
337s The above exception was the direct cause of the following exception:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path
337s     module = self._get_module_from_name(name)
337s   File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name
337s     __import__(name)
337s     ~~~~~~~~~~^^^^^^
337s   File "/tmp/autopkgtest.84YxaI/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build.py", line 3, in <module>
337s     import numpy as np
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in <module>
337s     raise ImportError(msg) from e
337s ImportError: Error importing numpy: you should not try to import numpy from
337s         its source directory; please exit the numpy source tree, and relaunch
337s         your python interpreter from there.
337s 
337s 
337s ======================================================================
337s ERROR: tests.unit.build_tests.mapper_tests.test_build_datetime (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_datetime)
337s ----------------------------------------------------------------------
337s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_datetime
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in <module>
337s     from . import multiarray
337s   File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in <module>
337s     from . import overrides
337s   File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in <module>
337s     from numpy.core._multiarray_umath import (
337s         add_docstring,  _get_implementing_args, _ArrayFunctionDispatcher)
337s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
337s 
337s During handling of the above exception, another exception occurred:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in <module>
337s     from numpy.__config__ import show as show_config
337s   File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in <module>
337s     from numpy.core._multiarray_umath import (
337s     ...<3 lines>...
337s     )
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in <module>
337s     raise ImportError(msg)
337s ImportError: 
337s 
337s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
337s 
337s Importing the numpy C-extensions failed. This error can happen for
337s many reasons, often due to issues with your setup or how NumPy was
337s installed.
337s 
337s We have compiled some common reasons and troubleshooting tips at:
337s 
337s     https://numpy.org/devdocs/user/troubleshooting-importerror.html
337s 
337s Please note and check the following:
337s 
337s   * The Python version is: Python3.13 from "/usr/bin/python3.13"
337s   * The NumPy version is: "1.26.4"
337s 
337s and make sure that they are the versions you expect.
337s Please carefully study the documentation linked above for further help.
337s 
337s Original error was: No module named 'numpy.core._multiarray_umath'
337s 
337s 
337s The above exception was the direct cause of the following exception:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path
337s     module = self._get_module_from_name(name)
337s   File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name
337s     __import__(name)
337s     ~~~~~~~~~~^^^^^^
337s   File "/tmp/autopkgtest.84YxaI/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_datetime.py", line 1, in <module>
337s     from hdmf.utils import docval, getargs
337s   File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in <module>
337s     from . import query
337s   File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in <module>
337s     import numpy as np
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in <module>
337s     raise ImportError(msg) from e
337s ImportError: Error importing numpy: you should not try to import numpy from
337s         its source directory; please exit the numpy source tree, and relaunch
337s         your python interpreter from there.
337s 
337s 
337s ======================================================================
337s ERROR: tests.unit.build_tests.mapper_tests.test_build_quantity (unittest.loader._FailedTest.tests.unit.build_tests.mapper_tests.test_build_quantity)
337s ----------------------------------------------------------------------
337s ImportError: Failed to import test module: tests.unit.build_tests.mapper_tests.test_build_quantity
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in <module>
337s     from . import multiarray
337s   File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in <module>
337s     from . import overrides
337s   File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in <module>
337s     from numpy.core._multiarray_umath import (
337s         add_docstring,  _get_implementing_args, _ArrayFunctionDispatcher)
337s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
337s 
337s During handling of the above exception, another exception occurred:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in <module>
337s     from numpy.__config__ import show as show_config
337s   File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in <module>
337s     from numpy.core._multiarray_umath import (
337s     ...<3 lines>...
337s     )
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in <module>
337s     raise ImportError(msg)
337s ImportError: 
337s 
337s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
337s 
337s Importing the numpy C-extensions failed. This error can happen for
337s many reasons, often due to issues with your setup or how NumPy was
337s installed.
337s 
337s We have compiled some common reasons and troubleshooting tips at:
337s 
337s     https://numpy.org/devdocs/user/troubleshooting-importerror.html
337s 
337s Please note and check the following:
337s 
337s   * The Python version is: Python3.13 from "/usr/bin/python3.13"
337s   * The NumPy version is: "1.26.4"
337s 
337s and make sure that they are the versions you expect.
337s Please carefully study the documentation linked above for further help.
337s 
337s Original error was: No module named 'numpy.core._multiarray_umath'
337s 
337s 
337s The above exception was the direct cause of the following exception:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path
337s     module = self._get_module_from_name(name)
337s   File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name
337s     __import__(name)
337s     ~~~~~~~~~~^^^^^^
337s   File "/tmp/autopkgtest.84YxaI/autopkgtest_tmp/tests/unit/build_tests/mapper_tests/test_build_quantity.py", line 1, in <module>
337s     from hdmf import Container, Data
337s   File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in <module>
337s     from . import query
337s   File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in <module>
337s     import numpy as np
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in <module>
337s     raise ImportError(msg) from e
337s ImportError: Error importing numpy: you should not try to import numpy from
337s         its source directory; please exit the numpy source tree, and relaunch
337s         your python interpreter from there.
337s 
337s 
337s ======================================================================
337s ERROR: tests.unit.build_tests.test_builder (unittest.loader._FailedTest.tests.unit.build_tests.test_builder)
337s ----------------------------------------------------------------------
337s ImportError: Failed to import test module: tests.unit.build_tests.test_builder
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in <module>
337s     from . import multiarray
337s   File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in <module>
337s     from . import overrides
337s   File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in <module>
337s     from numpy.core._multiarray_umath import (
337s         add_docstring,  _get_implementing_args, _ArrayFunctionDispatcher)
337s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
337s 
337s During handling of the above exception, another exception occurred:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in <module>
337s     from numpy.__config__ import show as show_config
337s   File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in <module>
337s     from numpy.core._multiarray_umath import (
337s     ...<3 lines>...
337s     )
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in <module>
337s     raise ImportError(msg)
337s ImportError: 
337s 
337s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
337s 
337s Importing the numpy C-extensions failed. This error can happen for
337s many reasons, often due to issues with your setup or how NumPy was
337s installed.
337s 
337s We have compiled some common reasons and troubleshooting tips at:
337s 
337s     https://numpy.org/devdocs/user/troubleshooting-importerror.html
337s 
337s Please note and check the following:
337s 
337s   * The Python version is: Python3.13 from "/usr/bin/python3.13"
337s   * The NumPy version is: "1.26.4"
337s 
337s and make sure that they are the versions you expect.
337s Please carefully study the documentation linked above for further help.
337s 
337s Original error was: No module named 'numpy.core._multiarray_umath'
337s 
337s 
337s The above exception was the direct cause of the following exception:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path
337s     module = self._get_module_from_name(name)
337s   File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name
337s     __import__(name)
337s     ~~~~~~~~~~^^^^^^
337s   File "/tmp/autopkgtest.84YxaI/autopkgtest_tmp/tests/unit/build_tests/test_builder.py", line 1, in <module>
337s     from hdmf.build import GroupBuilder, DatasetBuilder, LinkBuilder, ReferenceBuilder, RegionBuilder
337s   File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in <module>
337s     from . import query
337s   File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in <module>
337s     import numpy as np
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in <module>
337s     raise ImportError(msg) from e
337s ImportError: Error importing numpy: you should not try to import numpy from
337s         its source directory; please exit the numpy source tree, and relaunch
337s         your python interpreter from there.
337s 
337s 
337s ======================================================================
337s ERROR: tests.unit.build_tests.test_classgenerator (unittest.loader._FailedTest.tests.unit.build_tests.test_classgenerator)
337s ----------------------------------------------------------------------
337s ImportError: Failed to import test module: tests.unit.build_tests.test_classgenerator
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in <module>
337s     from . import multiarray
337s   File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in <module>
337s     from . import overrides
337s   File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in <module>
337s     from numpy.core._multiarray_umath import (
337s         add_docstring,  _get_implementing_args, _ArrayFunctionDispatcher)
337s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
337s 
337s During handling of the above exception, another exception occurred:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in <module>
337s     from numpy.__config__ import show as show_config
337s   File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in <module>
337s     from numpy.core._multiarray_umath import (
337s     ...<3 lines>...
337s     )
337s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in <module>
337s     raise ImportError(msg)
337s ImportError: 
337s 
337s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
337s 
337s Importing the numpy C-extensions failed. This error can happen for
337s many reasons, often due to issues with your setup or how NumPy was
337s installed.
337s 
337s We have compiled some common reasons and troubleshooting tips at:
337s 
337s     https://numpy.org/devdocs/user/troubleshooting-importerror.html
337s 
337s Please note and check the following:
337s 
337s   * The Python version is: Python3.13 from "/usr/bin/python3.13"
337s   * The NumPy version is: "1.26.4"
337s 
337s and make sure that they are the versions you expect.
337s Please carefully study the documentation linked above for further help.
337s 
337s Original error was: No module named 'numpy.core._multiarray_umath'
337s 
337s 
337s The above exception was the direct cause of the following exception:
337s 
337s Traceback (most recent call last):
337s   File "/usr/lib/python3.13/unittest/loader.py", line 396, in _find_test_path
337s     module = self._get_module_from_name(name)
337s   File "/usr/lib/python3.13/unittest/loader.py", line 339, in _get_module_from_name
337s     __import__(name)
337s     ~~~~~~~~~~^^^^^^
337s   File "/tmp/autopkgtest.84YxaI/autopkgtest_tmp/tests/unit/build_tests/test_classgenerator.py", line 1, in <module>
337s     import numpy as np
337s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in <module>
337s     raise ImportError(msg) from e
337s ImportError: Error importing numpy: you should not try to import numpy from
337s         its source directory; please exit the numpy source tree, and relaunch
337s         your python interpreter from there.
337s 
337s 
337s ======================================================================
337s ERROR: tests.unit.build_tests.test_convert_dtype (unittest.loader._FailedTest.tests.unit.build_tests.test_convert_dtype)
337s ----------------------------------------------------------------------
337s autopkgtest [16:43:33]: test run-unit-test: -----------------------]
341s autopkgtest [16:43:37]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
341s run-unit-test        FAIL non-zero exit status 1
345s autopkgtest [16:43:41]: test autodep8-python3: preparing testbed
355s Reading package lists...
356s Building dependency tree...
356s Reading state information...
356s Starting pkgProblemResolver with broken count: 0
356s Starting 2 pkgProblemResolver with broken count: 0
356s Done
357s The following NEW packages will be installed:
357s   autopkgtest-satdep
357s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
357s Need to get 0 B/712 B of archives.
357s After this operation, 0 B of additional disk space will be used.
357s Get:1 /tmp/autopkgtest.84YxaI/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [712 B]
358s Selecting previously unselected package autopkgtest-satdep.
358s (Reading database ... 
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358s Preparing to unpack .../2-autopkgtest-satdep.deb ...
358s Unpacking autopkgtest-satdep (0) ...
358s Setting up autopkgtest-satdep (0) ...
367s (Reading database ... 64781 files and directories currently installed.)
367s Removing autopkgtest-satdep (0) ...
373s autopkgtest [16:44:09]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import hdmf; print(hdmf)" ; done
373s autopkgtest [16:44:09]: test autodep8-python3: [-----------------------
375s Testing with python3.13:
376s Traceback (most recent call last):
376s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in <module>
376s     from . import multiarray
376s   File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in <module>
376s     from . import overrides
376s   File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in <module>
376s     from numpy.core._multiarray_umath import (
376s         add_docstring,  _get_implementing_args, _ArrayFunctionDispatcher)
376s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'
376s 
376s During handling of the above exception, another exception occurred:
376s 
376s Traceback (most recent call last):
376s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in <module>
376s     from numpy.__config__ import show as show_config
376s   File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in <module>
376s     from numpy.core._multiarray_umath import (
376s     ...<3 lines>...
376s     )
376s   File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in <module>
376s     raise ImportError(msg)
376s ImportError: 
376s 
376s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
376s 
376s Importing the numpy C-extensions failed. This error can happen for
376s many reasons, often due to issues with your setup or how NumPy was
376s installed.
376s 
376s We have compiled some common reasons and troubleshooting tips at:
376s 
376s     https://numpy.org/devdocs/user/troubleshooting-importerror.html
376s 
376s Please note and check the following:
376s 
376s   * The Python version is: Python3.13 from "/usr/bin/python3.13"
376s   * The NumPy version is: "1.26.4"
376s 
376s and make sure that they are the versions you expect.
376s Please carefully study the documentation linked above for further help.
376s 
376s Original error was: No module named 'numpy.core._multiarray_umath'
376s 
376s 
376s The above exception was the direct cause of the following exception:
376s 
376s Traceback (most recent call last):
376s   File "<string>", line 1, in <module>
376s     import hdmf; print(hdmf)
376s     ^^^^^^^^^^^
376s   File "/usr/lib/python3/dist-packages/hdmf/__init__.py", line 1, in <module>
376s     from . import query
376s   File "/usr/lib/python3/dist-packages/hdmf/query.py", line 3, in <module>
376s     import numpy as np
376s   File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in <module>
376s     raise ImportError(msg) from e
376s ImportError: Error importing numpy: you should not try to import numpy from
376s         its source directory; please exit the numpy source tree, and relaunch
376s         your python interpreter from there.
377s autopkgtest [16:44:12]: test autodep8-python3: -----------------------]
381s autopkgtest [16:44:17]: test autodep8-python3:  - - - - - - - - - - results - - - - - - - - - -
381s autodep8-python3     FAIL non-zero exit status 1
385s autopkgtest [16:44:21]: @@@@@@@@@@@@@@@@@@@@ summary
385s run-unit-test        FAIL non-zero exit status 1
385s autodep8-python3     FAIL non-zero exit status 1