0s autopkgtest [09:11:27]: starting date and time: 2024-11-30 09:11:27+0000 0s autopkgtest [09:11:27]: git checkout: be626eda Fix armhf LXD image generation for plucky 0s autopkgtest [09:11:27]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1j_ek8t7/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:fftw3 --apt-upgrade glam2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=fftw3/3.3.10-2fakesync1build1 -- lxd -r lxd-armhf-10.145.243.141 lxd-armhf-10.145.243.141:autopkgtest/ubuntu/plucky/armhf 54s autopkgtest [09:12:21]: testbed dpkg architecture: armhf 58s autopkgtest [09:12:25]: testbed apt version: 2.9.14ubuntu1 66s autopkgtest [09:12:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 71s autopkgtest [09:12:38]: testbed release detected to be: None 82s autopkgtest [09:12:49]: updating testbed package index (apt update) 85s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 85s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [213 kB] 85s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 85s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 85s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [788 kB] 86s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.1 kB] 86s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 86s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [64.6 kB] 86s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [87.0 kB] 86s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [928 B] 86s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [618 kB] 86s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [7468 B] 86s Get:13 http://ftpmaster.internal/ubuntu plucky/universe Sources [20.7 MB] 87s Get:14 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [298 kB] 87s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1377 kB] 87s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1353 kB] 87s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.0 MB] 88s Get:18 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [174 kB] 91s Fetched 40.8 MB in 6s (6783 kB/s) 92s Reading package lists... 100s autopkgtest [09:13:07]: upgrading testbed (apt dist-upgrade and autopurge) 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 103s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 103s Starting 2 pkgProblemResolver with broken count: 0 103s Done 104s Entering ResolveByKeep 104s 105s The following packages will be upgraded: 105s fwupd libfwupd3 python3-software-properties software-properties-common 105s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Need to get 5190 kB of archives. 105s After this operation, 4096 B disk space will be freed. 105s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 2.0.2-2 [5020 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd3 armhf 2.0.2-2 [124 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf software-properties-common all 0.107 [16.5 kB] 106s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-software-properties all 0.107 [30.4 kB] 106s Fetched 5190 kB in 1s (6548 kB/s) 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 106s Preparing to unpack .../fwupd_2.0.2-2_armhf.deb ... 106s Unpacking fwupd (2.0.2-2) over (2.0.2-1) ... 106s Preparing to unpack .../libfwupd3_2.0.2-2_armhf.deb ... 106s Unpacking libfwupd3:armhf (2.0.2-2) over (2.0.2-1) ... 107s Preparing to unpack .../software-properties-common_0.107_all.deb ... 107s Unpacking software-properties-common (0.107) over (0.105) ... 107s Preparing to unpack .../python3-software-properties_0.107_all.deb ... 107s Unpacking python3-software-properties (0.107) over (0.105) ... 107s Setting up libfwupd3:armhf (2.0.2-2) ... 107s Setting up python3-software-properties (0.107) ... 107s Setting up fwupd (2.0.2-2) ... 107s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 108s fwupd.service is a disabled or a static unit not running, not starting it. 108s Setting up software-properties-common (0.107) ... 108s Processing triggers for libc-bin (2.40-1ubuntu3) ... 108s Processing triggers for man-db (2.13.0-1) ... 109s Processing triggers for dbus (1.14.10-4ubuntu5) ... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 112s Starting pkgProblemResolver with broken count: 0 112s Starting 2 pkgProblemResolver with broken count: 0 112s Done 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s autopkgtest [09:13:22]: rebooting testbed after setup commands that affected boot 180s autopkgtest [09:14:27]: testbed running kernel: Linux 6.8.0-49-generic #49~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov 6 18:12:14 UTC 2 208s autopkgtest [09:14:55]: @@@@@@@@@@@@@@@@@@@@ apt-source glam2 219s Get:1 http://ftpmaster.internal/ubuntu plucky/universe glam2 1064-9 (dsc) [2006 B] 219s Get:2 http://ftpmaster.internal/ubuntu plucky/universe glam2 1064-9 (tar) [238 kB] 219s Get:3 http://ftpmaster.internal/ubuntu plucky/universe glam2 1064-9 (diff) [12.6 kB] 220s gpgv: Signature made Mon Dec 7 21:41:36 2020 UTC 220s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 220s gpgv: issuer "tille@debian.org" 220s gpgv: Can't check signature: No public key 220s dpkg-source: warning: cannot verify inline signature for ./glam2_1064-9.dsc: no acceptable signature found 220s autopkgtest [09:15:07]: testing package glam2 version 1064-9 222s autopkgtest [09:15:09]: build not needed 225s autopkgtest [09:15:12]: test check-no-args: preparing testbed 227s Reading package lists... 227s Building dependency tree... 227s Reading state information... 228s Starting pkgProblemResolver with broken count: 0 228s Starting 2 pkgProblemResolver with broken count: 0 228s Done 229s The following NEW packages will be installed: 229s glam2 libfftw3-double3 libgomp1 229s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 229s Need to get 713 kB of archives. 229s After this operation, 1408 kB of additional disk space will be used. 229s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 229s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libfftw3-double3 armhf 3.3.10-2fakesync1build1 [369 kB] 229s Get:3 http://ftpmaster.internal/ubuntu plucky/universe armhf glam2 armhf 1064-9 [220 kB] 230s Fetched 713 kB in 1s (1307 kB/s) 230s Selecting previously unselected package libgomp1:armhf. 230s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 230s Preparing to unpack .../libgomp1_14.2.0-8ubuntu1_armhf.deb ... 230s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 230s Selecting previously unselected package libfftw3-double3:armhf. 230s Preparing to unpack .../libfftw3-double3_3.3.10-2fakesync1build1_armhf.deb ... 230s Unpacking libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 230s Selecting previously unselected package glam2. 230s Preparing to unpack .../glam2_1064-9_armhf.deb ... 230s Unpacking glam2 (1064-9) ... 230s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 230s Setting up libfftw3-double3:armhf (3.3.10-2fakesync1build1) ... 230s Setting up glam2 (1064-9) ... 230s Processing triggers for man-db (2.13.0-1) ... 230s Processing triggers for libc-bin (2.40-1ubuntu3) ... 240s autopkgtest [09:15:27]: test check-no-args: [----------------------- 242s Usage: glam2 [options] alphabet my_seqs.fa 242s Alphabets: p = proteins, n = nucleotides, other = alphabet file 242s Options (default settings): 242s -h: show all options and their default settings 242s -o: output file (stdout) 242s -r: number of alignment runs (10) 242s -n: end each run after this many iterations without improvement (10000) 242s -2: examine both strands - forward and reverse complement 242s -z: minimum number of sequences in the alignment (2) 242s -a: minimum number of aligned columns (2) 242s -b: maximum number of aligned columns (50) 242s -w: initial number of aligned columns (20) 242s -d: Dirichlet mixture file 242s -D: deletion pseudocount (0.1) 242s -E: no-deletion pseudocount (2.0) 242s -I: insertion pseudocount (0.02) 242s -J: no-insertion pseudocount (1.0) 242s -q: weight for generic versus sequence-set-specific residue abundances (1e+99) 242s -t: initial temperature (1.2) 242s -c: cooling factor per n iterations (1.44) 242s -u: temperature lower bound (0.1) 242s -p: print progress information at each iteration 242s -m: column-sampling moves per site-sampling move (1.0) 242s -x: site sampling algorithm: 0=FAST 1=SLOW 2=FFT (0) 242s -s: seed for pseudo-random numbers (1) 242s SUCCESS: Help text is there! 243s autopkgtest [09:15:29]: test check-no-args: -----------------------] 247s autopkgtest [09:15:34]: test check-no-args: - - - - - - - - - - results - - - - - - - - - - 247s check-no-args PASS 252s autopkgtest [09:15:39]: test run-unit-test: preparing testbed 254s Reading package lists... 255s Building dependency tree... 255s Reading state information... 255s Starting pkgProblemResolver with broken count: 0 255s Starting 2 pkgProblemResolver with broken count: 0 255s Done 256s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 264s autopkgtest [09:15:51]: test run-unit-test: [----------------------- 268s Run 1... 12350 iterations 269s Run 2... 17270 iterations 270s Run 3... 19781 iterations 271s Run 4... 12220 iterations 273s Run 5... 18950 iterations 274s Run 6... 15650 iterations 278s Run 7... 31104 iterations 279s Run 8... 21854 iterations 280s Run 9... 11813 iterations 281s Run 10... 11182 iterations 281s 281s GLAM2: Gapped Local Alignment of Motifs 281s Version 1064 281s 281s glam2 p lipocalin.s 281s Sequences: 5 281s Greatest sequence length: 189 281s Residue counts: A=65 C=26 D=62 E=70 F=39 G=52 H=23 I=43 K=78 L=79 M=16 N=48 P=29 Q=26 R=28 S=53 T=43 V=63 W=15 Y=45 x=0 281s 281s Score: 80.3660 Columns: 20 Sequences: 5 281s 281s ******************** 281s ICYA_MANSE 13 KPVNDFDLSAFAGAWHEIAK 32 + 33.3 281s LACB_BOVIN 21 QTMKGLDIQKVAGTWYSLAM 40 + 18.8 281s BBP_PIEBR 12 KPVDNFDWSNYHGKWWEVAK 31 + 27.9 281s RETB_BOVIN 10 RVKENFDKARFAGTWYAMAK 29 + 25.5 281s MUP2_MOUSE 23 STGRNFNVEKINGEWHTIIL 42 + 13.4 281s 281s KPVDNFDISKFAGTWHEIAK 281s QTGEDLNKAAIH A YALIL 281s RVKKG LENVN E WSM M 281s S MN VQRY K TV 281s R W 281s 281s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 281s 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 0 1.51 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1.06 281s 0 -0.0655 281s 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 -2.00 281s 0 -0.0655 281s 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0.233 281s 0 -0.0655 281s 0 0 1 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 4.91 281s 0 -0.0655 281s 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9.87 281s 0 -0.0655 281s 0 0 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 9.08 281s 0 -0.0655 281s 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 -1.61 281s 0 -0.0655 281s 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 -0.0557 281s 0 -0.0655 281s 1 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 0.836 281s 0 -0.0655 281s 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 2.40 281s 0 -0.0655 281s 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1.35 281s 0 -0.0655 281s 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12.9 281s 0 -0.0655 281s 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0.355 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 22.5 281s 0 -0.0655 281s 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 2 0 7.34 281s 0 -0.0655 281s 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 -0.00544 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 281s 0 -0.0655 281s 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 5.12 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 1.70 281s 281s Score: 80.3660 Columns: 20 Sequences: 5 281s 281s ******************** 281s ICYA_MANSE 13 KPVNDFDLSAFAGAWHEIAK 32 + 33.3 281s LACB_BOVIN 21 QTMKGLDIQKVAGTWYSLAM 40 + 18.8 281s BBP_PIEBR 12 KPVDNFDWSNYHGKWWEVAK 31 + 27.9 281s RETB_BOVIN 10 RVKENFDKARFAGTWYAMAK 29 + 25.5 281s MUP2_MOUSE 23 STGRNFNVEKINGEWHTIIL 42 + 13.4 281s 281s KPVDNFDISKFAGTWHEIAK 281s QTGEDLNKAAIH A YALIL 281s RVKKG LENVN E WSM M 281s S MN VQRY K TV 281s R W 281s 281s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 281s 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 0 1.51 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1.06 281s 0 -0.0655 281s 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 -2.00 281s 0 -0.0655 281s 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0.233 281s 0 -0.0655 281s 0 0 1 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 4.91 281s 0 -0.0655 281s 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9.87 281s 0 -0.0655 281s 0 0 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 9.08 281s 0 -0.0655 281s 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 -1.61 281s 0 -0.0655 281s 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 -0.0557 281s 0 -0.0655 281s 1 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 0.836 281s 0 -0.0655 281s 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 2.40 281s 0 -0.0655 281s 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1.35 281s 0 -0.0655 281s 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12.9 281s 0 -0.0655 281s 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0.355 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 22.5 281s 0 -0.0655 281s 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 2 0 7.34 281s 0 -0.0655 281s 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 -0.00544 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 281s 0 -0.0655 281s 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 5.12 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 1.70 281s 281s Score: 80.3660 Columns: 20 Sequences: 5 281s 281s ******************** 281s ICYA_MANSE 13 KPVNDFDLSAFAGAWHEIAK 32 + 33.3 281s LACB_BOVIN 21 QTMKGLDIQKVAGTWYSLAM 40 + 18.8 281s BBP_PIEBR 12 KPVDNFDWSNYHGKWWEVAK 31 + 27.9 281s RETB_BOVIN 10 RVKENFDKARFAGTWYAMAK 29 + 25.5 281s MUP2_MOUSE 23 STGRNFNVEKINGEWHTIIL 42 + 13.4 281s 281s KPVDNFDISKFAGTWHEIAK 281s QTGEDLNKAAIH A YALIL 281s RVKKG LENVN E WSM M 281s S MN VQRY K TV 281s R W 281s 281s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 281s 0 0 0 0 0 0 0 0 2 0 0 0 0 1 1 1 0 0 0 0 0 1.51 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 2 1 0 0 0 1.06 281s 0 -0.0655 281s 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 2 0 0 0 -2.00 281s 0 -0.0655 281s 0 0 1 1 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0.233 281s 0 -0.0655 281s 0 0 1 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 4.91 281s 0 -0.0655 281s 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 9.87 281s 0 -0.0655 281s 0 0 4 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 9.08 281s 0 -0.0655 281s 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0 0 1 1 0 0 -1.61 281s 0 -0.0655 281s 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 -0.0557 281s 0 -0.0655 281s 1 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 0.836 281s 0 -0.0655 281s 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 2.40 281s 0 -0.0655 281s 3 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1.35 281s 0 -0.0655 281s 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12.9 281s 0 -0.0655 281s 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0.355 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 22.5 281s 0 -0.0655 281s 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 2 0 7.34 281s 0 -0.0655 281s 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 -0.00544 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 281s 0 -0.0655 281s 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 5.12 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 3 1 1 0 0 0 0 0 0 0 0 0 0 1.70 281s 281s Score: 77.3362 Columns: 21 Sequences: 5 281s 281s ********************* 281s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCD 120 + 37.8 281s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMEN 125 + 20.1 281s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCK 116 + 27.2 281s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCR 121 + 26.7 281s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLIN 125 + 18.6 281s 281s NDFHWVLDTDYKNYAIAYLCN 281s KVL IIA NDKFLLFCMED 281s LDN PK ET IMGHNIK 281s T P S VN S R 281s V T Q Y 281s 281s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 281s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 281s 0 -0.0655 281s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 281s 0 -0.0655 281s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 281s Run 1... 0 -0.0655 281s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 281s 0 -0.0655 281s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 281s 0 -0.0655 281s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 281s 0 -0.0655 281s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 281s 0 -0.0655 281s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 281s 0 -0.0655 281s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 281s 0 -0.0655 281s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 281s 0 -0.0655 281s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 281s 0 -0.0655 281s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 281s 281s Score: 77.3362 Columns: 21 Sequences: 5 281s 281s ********************* 281s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCD 120 + 37.8 281s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMEN 125 + 20.1 281s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCK 116 + 27.2 281s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCR 121 + 26.7 281s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLIN 125 + 18.6 281s 281s NDFHWVLDTDYKNYAIAYLCN 281s KVL IIA NDKFLLFCMED 281s LDN PK ET IMGHNIK 281s T P S VN S R 281s V T Q Y 281s 281s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 281s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 281s 0 -0.0655 281s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 281s 0 -0.0655 281s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 281s 0 -0.0655 281s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 281s 0 -0.0655 281s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 281s 0 -0.0655 281s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 281s 0 -0.0655 281s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 281s 0 -0.0655 281s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 281s 0 -0.0655 281s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 281s 0 -0.0655 281s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 281s 0 -0.0655 281s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 281s 0 -0.0655 281s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 281s 281s Score: 77.3362 Columns: 21 Sequences: 5 281s 281s ********************* 281s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCD 120 + 37.8 281s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMEN 125 + 20.1 281s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCK 116 + 27.2 281s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCR 121 + 26.7 281s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLIN 125 + 18.6 281s 281s NDFHWVLDTDYKNYAIAYLCN 281s KVL IIA NDKFLLFCMED 281s LDN PK ET IMGHNIK 281s T P S VN S R 281s V T Q Y 281s 281s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 281s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 281s 0 -0.0655 281s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 281s 0 -0.0655 281s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 281s 0 -0.0655 281s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 281s 0 -0.0655 281s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 281s 0 -0.0655 281s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 281s 0 -0.0655 281s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 281s 0 -0.0655 281s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 281s 0 -0.0655 281s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 281s 0 -0.0655 281s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 281s 0 -0.0655 281s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 281s 0 -0.0655 281s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 281s 281s Score: 77.3362 Columns: 21 Sequences: 5 281s 281s ********************* 281s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCD 120 + 37.8 281s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMEN 125 + 20.1 281s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCK 116 + 27.2 281s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCR 121 + 26.7 281s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLIN 125 + 18.6 281s 281s NDFHWVLDTDYKNYAIAYLCN 281s KVL IIA NDKFLLFCMED 281s LDN PK ET IMGHNIK 281s T P S VN S R 281s V T Q Y 281s 281s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 281s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 281s 0 -0.0655 281s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 281s 0 -0.0655 281s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 281s 0 -0.0655 281s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 281s 0 -0.0655 281s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 281s 0 -0.0655 281s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 281s 0 -0.0655 281s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 281s 0 -0.0655 281s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 281s 0 -0.0655 281s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 281s 0 -0.0655 281s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 281s 0 -0.0655 281s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 281s 0 -0.0655 281s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 281s 281s Score: 75.7471 Columns: 26 Sequences: 5 281s 281s ************************** 281s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCDYHPDK 125 + 40.6 281s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMENSAEPE 130 + 20.6 281s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCKYDEDK 121 + 32.0 281s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCRLLNLD 126 + 20.6 281s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLINEKDGE 130 + 18.1 281s 281s NDFHWVLDTDYKNYAIAYLCNYAEDE 281s KVL IIA NDKFLLFCMEDEDDGK 281s LDN PK ET IMGHNIKLHNLD 281s T P S VN S RSKPP 281s V T Q Y L 281s 281s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 281s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 281s 0 -0.0655 281s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 281s 0 -0.0655 281s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 281s 0 -0.0655 281s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 281s 0 -0.0655 281s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 281s 0 -0.0655 281s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 281s 0 -0.0655 281s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 281s 0 -0.0655 281s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 281s 0 -0.0655 281s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 281s 0 -0.0655 281s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 281s 0 -0.0655 281s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 281s 0 -0.0655 281s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 281s 0 -0.0655 281s 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 2 0 -0.975 281s 0 -0.0655 281s 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 -2.88 281s 0 -0.0655 281s 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1.18 281s 0 -0.0655 281s 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 -2.32 281s 0 -0.0655 281s 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 3.72 281s 281s Score: 75.7471 Columns: 26 Sequences: 5 281s 281s ************************** 281s ICYA_MANSE 100 NLVPWVLATDYKNYAINYNCDYHPDK 125 + 40.6 281s LACB_BOVIN 106 NKVL.VLDTDYKKYLLFCMENSAEPE 130 + 20.6 281s BBP_PIEBR 97 NVFN.VLSTDNKNYIIGYYCKYDEDK 121 + 32.0 281s RETB_BOVIN 101 NDDHWIIDTDYETFAVQYSCRLLNLD 126 + 20.6 281s MUP2_MOUSE 106 NTFT.IPKTDYDNFLMAHLINEKDGE 130 + 18.1 281s 281s NDFHWVLDTDYKNYAIAYLCNYAEDE 281s KVL IIA NDKFLLFCMEDEDDGK 281s LDN PK ET IMGHNIKLHNLD 281s T P S VN S RSKPP 281s V T Q Y L 281s 281s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 281s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 281s 0 -0.0655 281s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 281s 0 -0.0655 281s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 281s 0 -0.0655 281s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 281s 0 -0.0655 281s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 281s 0 -0.0655 281s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 281s 0 -0.0655 281s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 281s 0 -0.0655 281s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 281s 0 -0.0655 281s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 281s 0 -0.0655 281s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 281s 0 -0.0655 281s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 281s 0 -0.0655 281s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 281s 0 -0.0655 281s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 281s 0 -0.0655 281s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 281s 0 -0.0655 281s 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 2 0 -0.975 281s 0 -0.0655 281s 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 -2.88 281s 0 -0.0655 281s 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1.18 281s 0 -0.0655 281s 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 -2.32 281s 0 -0.0655 281s 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 3.72 281s 281s Score: 73.5314 Columns: 41 Sequences: 5 281s 281s ********.*******.......************************** 281s ICYA_MANSE 81 KYTKQGKY.VMTFK.FGQRVV..NLVPWVLATDYKNYAINYNCDYHPDK 125 + 38.9 281s LACB_BOVIN 91 KTKIPAVF.KIDALNE.......NKVL.VLDTDYKKYLLFCMENSAEPE 130 + 21.8 281s BBP_PIEBR 78 DSKIGKIYHKLTYGGVTKE....NVFN.VLSTDNKNYIIGYYCKYDEDK 121 + 32.8 281s RETB_BOVIN 79 DTEDPAKF.KMKYWGVASFLQKGNDDHWIIDTDYETFAVQYSCRLLNLD 126 + 34.1 281s MUP2_MOUSE 91 KTEKAGEY.SVTYDGF.......NTFT.IPKTDYDNFLMAHLINEKDGE 130 + 33.6 281s 281s KTEIPAKY KMTYDGF NDFHWVLDTDYKNYAIAYLCNYAEDE 281s DSKKAGEF SIDAGNV KVL IIA NDKFLLFCMEDEDDGK 281s YTDGKI VLKFK E LDN PK ET IMGHNIKLHNLD 281s Q V V L T P S VN S RSKPP 281s W V T Q Y L 281s 281s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 281s 0 0 2 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 5.22 281s 0 -0.0655 281s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 1 0 2.46 281s 0 -0.0655 281s 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 2.94 281s 0 -0.0655 281s 0 0 1 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0.216 281s 0 -0.0655 281s 1 0 0 0 0 1 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 -1.06 281s 0 -0.0655 281s 2 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0.824 281s 0 -0.0655 281s 0 0 0 1 0 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 -0.808 281s 0 -0.0655 281s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 281s 1 -8.30 281s 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 1 0 1 0 0 0 1.49 281s 0 -0.0655 281s 0 0 0 0 0 0 0 1 0 1 2 0 0 0 0 0 0 1 0 0 0 4.57 282s 0 -0.0655 282s 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 3 0 0 0 0 2.41 282s 0 -0.0655 282s 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.65 282s 0 -0.0655 282s 0 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 1 0 0 -4.16 282s 0 -0.0655 282s 0 0 0 0 0 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 -1.19 282s 0 -0.0655 282s 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.743 282s 15 -23.5 282s 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 14.2 282s 0 -0.0655 282s 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 -3.28 282s 0 -0.0655 282s 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0.278 282s 0 -0.0655 282s 0 0 0 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 -2.97 282s 0 -0.0655 282s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 3 -4.19 282s 0 -0.0655 282s 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 8.67 282s 0 -0.0655 282s 0 0 0 0 0 0 0 1 0 3 0 0 1 0 0 0 0 0 0 0 0 1.58 282s 0 -0.0655 282s 1 0 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0.395 282s 0 -0.0655 282s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 12.2 282s 0 -0.0655 282s 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13.9 282s 0 -0.0655 282s 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 4 0 8.89 282s 0 -0.0655 282s 0 0 1 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 4.07 282s 0 -0.0655 282s 0 0 0 0 0 0 0 0 1 0 0 3 0 0 0 0 1 0 0 0 0 3.33 282s 0 -0.0655 282s 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 11.1 282s 0 -0.0655 282s 2 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 2.04 282s 0 -0.0655 282s 0 0 0 0 0 0 0 2 0 1 1 0 0 0 0 0 0 1 0 0 0 4.05 282s 0 -0.0655 282s 1 0 0 0 1 1 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 -3.34 282s 0 -0.0655 282s 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 5.78 282s 0 -0.0655 282s 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 1 0 0 0 1 0 -2.50 282s 0 -0.0655 282s 0 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2.99 282s 0 -0.0655 282s 0 0 1 0 0 0 0 0 1 0 0 2 0 0 1 0 0 0 0 0 0 1.52 282s 0 -0.0655 282s 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 2 0 -0.975 282s 0 -0.0655 282s 1 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 -2.88 282s 0 -0.0655 282s 0 0 1 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 1.18 282s 0 -0.0655 282s 0 0 2 0 0 1 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 -2.32 282s 0 -0.0655 282s 0 0 1 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 3.72 282s 282s GLAM2: Gapped Local Alignment of Motifs 282s Version 1064 282s 282s glam2 -r 1 -n 1000 p crp0.s 282s Sequences: 18 282s Greatest sequence length: 105 282s Residue counts: A=572 C=345 D=0 E=0 F=0 G=395 H=0 I=0 K=0 L=0 M=0 N=0 P=0 Q=0 R=0 S=0 T=578 V=0 W=0 Y=0 x=0 282s 282s Score: 1431.87 Columns: 46 Sequences: 18 282s 282s *********.......*****.................********...............********........***.........****..********* 282s ce1cg 31 GCGAGAATAG......CGCGTGGTG.............TGAAAGACTGTTTTTTTGATCGTTTTCACAAAAA.....TGGAA.......GTCC..ACAGTCTTG 101 + 95.1 282s ara 31 TCACGGCAGAAAAGTCCACATTGATTATT.........TGCACGGCG..............TCACACTT........TGCTA.......TGCC..ATAGCATTT 94 + 114. 282s bglr1 37 ATATAACTTTATAAA.TTCCTAAAAT............TACACAAA...............GTTAATAAC.......TGTG........AGCAT.GGTCATATT 96 + 99.8 282s crp 46 ACATTGATG.......TACTGCATG.............TATGCAAAGGACG..........TCACATTACCG.....TGCAG.......TACA..GTTGATAGC 105 + 109. 282s cya 1 ACGGTGCTA.......CACTTG................TATGTAGCGCATC..........TTTCTTTACGG.....TCA.........ATCA..GCAAGGTGT 55 + 109. 282s deop2 18 AGATCGCAT.......TACAGTGATGCAAACTTG....TAAGTAGA...............TTTCCTTAAT......TGTGATGTG...TATC..GAAGTGTGT 84 + 105. 282s gale 10 AAACGGCTAAA.....TTCTTG................TGTAAACGA..............TTCCACTAATTTAT..TCCA........TGTC..ACACTTTTC 66 + 117. 282s ilv 21 TATCTGCAA.......TTCAG.................TACAAAACGTGATCA........ACCCCTCAATTT....TCCCTT......TGCT..GAAAAATTT 80 + 112. 282s lac 16 AGTTAGCTCA......CTCAT.................TAGGCACCCCAGGCT........TTACACTTTA......TGC.........TTCCG.GCTCGTATG 72 + 111. 282s male 4 TTACCGCCAA......TTCTG.................TAACAGAGA..............TCACACAAAGCGACGGTGGGGCGTAGG.GGCAA.GGAGGATGG 68 + 95.1 282s malk 22 ACACGGCTT.......CTGTGAACTAAACCGAGGTCA.TGTAAGGAA..............TTTCGTGA........TGT.........TGCTT.GCAAAAATC 85 + 109. 282s malt 50 ACAGTGCAAA......TTCAGACACA............TAAAAAAAC..............GTCATCGCT.......TGC.........ATTA..GAAAGGTTT 103 + 107. 282s ompa 30 ACAAGACTTTTTT...TTCATA................TGCCTGACGGA............GTTCACACT.......TGTAAGTT....TTCA..ACTACGTTG 89 + 113. 282s tnaa 9 ACATTAAAA.......TTCTTACGTAATTTATAATCTTTAAAAAAAGCA............TTTAATAT........TGC.........TCCCC.GAACGATTG 75 + 109. 282s uxu1 32 AACCCAATTAGAA...TTCGGGATTGACATGTCT....TACCAAAAGGTAGAACTT.....ATACGCCA........TCTC........ATCC..GATGCAAGC 105 + 101. 282s pbr322 12 ATGCGGCAT.......CAGAGCAGATTG..........TACTGAGA...............GTGCACCATA......TGCGGTGTGAAATACC..GCACAGATG 75 + 108. 282s trn9cat 11 AGATCACTT.......CGCAGAA...............TAAATAAATCCTGGT........GTCCCTGT........TGA.........TACCGGGAAGCCCTG 67 + 107. 282s tdc 47 ATAACGATA.......CTCTGGAAAG............TATTGAAA...............GTTAATTTG.......TGAGT.......GGTC..GCACATATC 100 + 107. 282s 282s ACACGGCTA TTCAG TAAAAAAA TTTCACTA TGC TGCC GCAGAATTG 282s T TCAAAT CA TT GCGCGGC GCAA TAT CT ATTA AATCGGAGT 282s T T T C A ACT C 282s 282s A C D E F G H I K L M N P Q R S T V W Y Del Ins Score 282s 14 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 37.3 282s 0 -0.100 282s 3 8 0 0 0 3 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 32.9 282s 0 -0.100 282s 12 1 0 0 0 3 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 29.5 282s 0 -0.100 282s 3 7 0 0 0 2 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 31.9 282s 0 -0.100 282s 2 5 0 0 0 6 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 26.4 282s 0 -0.100 282s 6 0 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 40.1 282s 0 -0.100 282s 5 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 62.9 282s 0 -0.100 282s 6 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 34.9 282s 0 -0.100 282s 8 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 26.2 282s 27 -51.1 282s 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 52.5 282s 0 -0.100 282s 5 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 32.4 282s 0 -0.100 282s 0 16 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 75.8 282s 0 -0.100 282s 8 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 26.2 282s 0 -0.100 282s 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 38.4 282s 102 -82.2 282s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0 0 64.5 282s 0 -0.100 282s 13 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39.7 282s 0 -0.100 282s 6 6 0 0 0 1 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 31.2 282s 0 -0.100 282s 9 3 0 0 0 4 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 26.2 282s 0 -0.100 282s 8 4 0 0 0 2 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 26.9 282s 0 -0.100 282s 13 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39.7 282s 0 -0.100 282s 11 2 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 33.5 282s 0 -0.100 282s 10 6 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 39.7 282s 67 -71.8 282s 2 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 30.8 282s 0 -0.100 282s 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 49.3 282s 0 -0.100 282s 5 4 0 0 0 1 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 29.1 282s 0 -0.100 282s 4 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 66.8 282s 0 -0.100 282s 11 3 0 0 0 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 29.8 282s 0 -0.100 282s 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 0 0 0 0 54.3 282s 0 -0.100 282s 5 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 24.3 282s 0 -0.100 282s 11 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 33.0 282s 37 -57.9 282s 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0 0 64.5 282s 0 -0.100 282s 0 4 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 47.7 282s 0 -0.100 282s 3 8 0 0 0 2 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 34.0 282s 42 -60.8 282s 4 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 11 0 0 0 0 31.4 282s 0 -0.100 282s 4 1 0 0 0 7 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 22.9 282s 0 -0.100 282s 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 68.5 282s 0 -0.100 282s 6 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 45.9 282s 7 -27.4 282s 4 0 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 43.6 282s 0 -0.100 282s 6 8 0 0 0 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 35.2 282s 0 -0.100 282s 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 39.1 282s 0 -0.100 282s 5 6 0 0 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 35.3 282s 0 -0.100 282s 6 4 0 0 0 5 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 24.4 282s 0 -0.100 282s 6 2 0 0 0 5 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 22.2 282s 0 -0.100 282s 7 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 0 0 0 0 33.9 282s 0 -0.100 282s 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 13 0 0 0 0 40.8 282s 0 -0.100 282s 0 5 0 0 0 7 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 31.3 282s 282s PASS 282s 4122 iterations 282s 282s autopkgtest [09:16:09]: test run-unit-test: -----------------------] 286s run-unit-test PASS 286s autopkgtest [09:16:13]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 290s autopkgtest [09:16:17]: @@@@@@@@@@@@@@@@@@@@ summary 290s check-no-args PASS 290s run-unit-test PASS