0s autopkgtest [10:35:55]: starting date and time: 2024-11-13 10:35:55+0000 0s autopkgtest [10:35:55]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [10:35:55]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ak8slum_/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade cnvkit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- lxd -r lxd-armhf-10.145.243.141 lxd-armhf-10.145.243.141:autopkgtest/ubuntu/plucky/armhf 54s autopkgtest [10:36:49]: testbed dpkg architecture: armhf 56s autopkgtest [10:36:51]: testbed apt version: 2.9.8 56s autopkgtest [10:36:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 64s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 64s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 64s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 64s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 64s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 64s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [79.5 kB] 64s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [569 kB] 64s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [16.1 kB] 65s Fetched 1686 kB in 1s (1608 kB/s) 65s Reading package lists... 82s tee: /proc/self/fd/2: Permission denied 103s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 103s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 103s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 105s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s Calculating upgrade... 106s The following packages were automatically installed and are no longer required: 106s libperl5.38t64 perl-modules-5.38 python3-netifaces 106s Use 'apt autoremove' to remove them. 106s The following NEW packages will be installed: 106s libperl5.40 perl-modules-5.40 python3.13-gdbm systemd-cryptsetup 106s The following packages will be upgraded: 106s apport apport-core-dump-handler base-files base-passwd bash-completion 106s dhcpcd-base distro-info-data dpkg dpkg-dev fwupd gcc-14-base info 106s install-info iproute2 libarchive13t64 libatomic1 libattr1 106s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 106s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 106s libblockdev3 libbpf1 libbsd0 libbytesize-common libbytesize1 libdb5.3t64 106s libdpkg-perl libdrm-common libdrm2 libdw1t64 libedit2 libelf1t64 libevdev2 106s libfastjson4 libflashrom1 libftdi1-2 libfwupd2 libgcc-s1 libgpgme11t64 107s libinih1 libjson-c5 libjson-glib-1.0-0 libjson-glib-1.0-common libkeyutils1 107s libldap-common libldap2 liblocale-gettext-perl libmaxminddb0 libmnl0 107s libnetfilter-conntrack3 libnetplan1 libnghttp2-14 libnspr4 libnss-systemd 107s libnvme1t64 libpam-systemd libpipeline1 libplymouth5 libpng16-16t64 libpopt0 107s libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib 107s libsgutils2-1.46-2 libssh2-1t64 libstdc++6 libsystemd-shared libsystemd0 107s libtext-charwidth-perl libtext-iconv-perl libtraceevent1 107s libtraceevent1-plugin libudev1 libudisks2-0 liburcu8t64 libuv1t64 libx11-6 107s libx11-data libxau6 libxmlb2 mawk motd-news-config nano netplan-generator 107s netplan.io openssh-client openssh-server openssh-sftp-server pci.ids perl 107s perl-base plymouth plymouth-theme-ubuntu-text python3 python3-apport 107s python3-certifi python3-cffi-backend python3-configobj python3-gdbm 107s python3-gi python3-idna python3-jaraco.functools python3-json-pointer 107s python3-jsonpatch python3-lazr.restfulclient python3-lazr.uri 107s python3-minimal python3-more-itertools python3-netplan python3-oauthlib 107s python3-problem-report python3-typeguard python3-urllib3 python3-wadllib 107s python3-zipp python3.12 python3.12-gdbm python3.12-minimal sg3-utils 107s sg3-utils-udev ssh-import-id systemd systemd-resolved systemd-sysv 107s systemd-timesyncd tzdata udev udisks2 ufw usbutils vim-common vim-tiny xxd 107s 138 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 44.4 MB of archives. 107s After this operation, 43.1 MB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf motd-news-config all 13.5ubuntu3 [5190 B] 107s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf base-files armhf 13.5ubuntu3 [75.1 kB] 107s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg armhf 1.22.11ubuntu3 [1247 kB] 107s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf perl-modules-5.40 all 5.40.0-7 [3214 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf libperl5.40 armhf 5.40.0-7 [4139 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky/main armhf perl armhf 5.40.0-7 [263 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky/main armhf perl-base armhf 5.40.0-7 [1674 kB] 107s Get:8 http://ftpmaster.internal/ubuntu plucky/main armhf liblocale-gettext-perl armhf 1.07-7build1 [15.0 kB] 107s Get:9 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-iconv-perl armhf 1.7-8build4 [12.8 kB] 107s Get:10 http://ftpmaster.internal/ubuntu plucky/main armhf libtext-charwidth-perl armhf 0.04-11build4 [9128 B] 107s Get:11 http://ftpmaster.internal/ubuntu plucky/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [655 kB] 108s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf base-passwd armhf 3.6.5 [53.2 kB] 108s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-minimal armhf 3.12.7-1 [27.4 kB] 108s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3 armhf 3.12.7-1 [24.0 kB] 108s Get:15 http://ftpmaster.internal/ubuntu plucky/main armhf tzdata all 2024b-1ubuntu2 [274 kB] 108s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12 armhf 3.12.7-3 [661 kB] 108s Get:17 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1934 kB] 108s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-minimal armhf 3.12.7-3 [2012 kB] 108s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf libpython3.12-minimal armhf 3.12.7-3 [822 kB] 108s Get:20 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf libpython3-stdlib armhf 3.12.7-1 [10.0 kB] 108s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf libnss-systemd armhf 256.5-2ubuntu4 [155 kB] 108s Get:22 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-timesyncd armhf 256.5-2ubuntu4 [40.7 kB] 108s Get:23 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-resolved armhf 256.5-2ubuntu4 [309 kB] 108s Get:24 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd-shared armhf 256.5-2ubuntu4 [2129 kB] 108s Get:25 http://ftpmaster.internal/ubuntu plucky/main armhf libsystemd0 armhf 256.5-2ubuntu4 [428 kB] 108s Get:26 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-sysv armhf 256.5-2ubuntu4 [11.9 kB] 108s Get:27 http://ftpmaster.internal/ubuntu plucky/main armhf libpam-systemd armhf 256.5-2ubuntu4 [226 kB] 108s Get:28 http://ftpmaster.internal/ubuntu plucky/main armhf systemd armhf 256.5-2ubuntu4 [3442 kB] 108s Get:29 http://ftpmaster.internal/ubuntu plucky/main armhf udev armhf 256.5-2ubuntu4 [1949 kB] 108s Get:30 http://ftpmaster.internal/ubuntu plucky/main armhf libudev1 armhf 256.5-2ubuntu4 [188 kB] 108s Get:31 http://ftpmaster.internal/ubuntu plucky/main armhf python3-problem-report all 2.30.0-0ubuntu5 [25.0 kB] 108s Get:32 http://ftpmaster.internal/ubuntu plucky/main armhf python3-apport all 2.30.0-0ubuntu5 [93.2 kB] 108s Get:33 http://ftpmaster.internal/ubuntu plucky/main armhf python3-gi armhf 3.50.0-3 [227 kB] 108s Get:34 http://ftpmaster.internal/ubuntu plucky/main armhf apport-core-dump-handler all 2.30.0-0ubuntu5 [17.9 kB] 108s Get:35 http://ftpmaster.internal/ubuntu plucky/main armhf apport all 2.30.0-0ubuntu5 [83.0 kB] 108s Get:36 http://ftpmaster.internal/ubuntu plucky/main armhf libbsd0 armhf 0.12.2-2 [36.8 kB] 108s Get:37 http://ftpmaster.internal/ubuntu plucky/main armhf libedit2 armhf 3.1-20240808-1 [79.0 kB] 108s Get:38 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-sftp-server armhf 1:9.7p1-7ubuntu5 [35.4 kB] 108s Get:39 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-server armhf 1:9.7p1-7ubuntu5 [505 kB] 108s Get:40 http://ftpmaster.internal/ubuntu plucky/main armhf openssh-client armhf 1:9.7p1-7ubuntu5 [889 kB] 108s Get:41 http://ftpmaster.internal/ubuntu plucky/main armhf libatomic1 armhf 14.2.0-8ubuntu1 [7846 B] 108s Get:42 http://ftpmaster.internal/ubuntu plucky/main armhf gcc-14-base armhf 14.2.0-8ubuntu1 [51.5 kB] 108s Get:43 http://ftpmaster.internal/ubuntu plucky/main armhf libstdc++6 armhf 14.2.0-8ubuntu1 [711 kB] 108s Get:44 http://ftpmaster.internal/ubuntu plucky/main armhf libgcc-s1 armhf 14.2.0-8ubuntu1 [40.8 kB] 108s Get:45 http://ftpmaster.internal/ubuntu plucky/main armhf libattr1 armhf 1:2.5.2-2 [10.5 kB] 108s Get:46 http://ftpmaster.internal/ubuntu plucky/main armhf install-info armhf 7.1.1-1 [61.4 kB] 108s Get:47 http://ftpmaster.internal/ubuntu plucky/main armhf mawk armhf 1.3.4.20240905-1 [116 kB] 108s Get:48 http://ftpmaster.internal/ubuntu plucky/main armhf dhcpcd-base armhf 1:10.1.0-2 [188 kB] 108s Get:49 http://ftpmaster.internal/ubuntu plucky/main armhf distro-info-data all 0.63 [6588 B] 108s Get:50 http://ftpmaster.internal/ubuntu plucky/main armhf libdw1t64 armhf 0.192-4 [243 kB] 108s Get:51 http://ftpmaster.internal/ubuntu plucky/main armhf libelf1t64 armhf 0.192-4 [50.2 kB] 108s Get:52 http://ftpmaster.internal/ubuntu plucky/main armhf libbpf1 armhf 1:1.5.0-1 [158 kB] 108s Get:53 http://ftpmaster.internal/ubuntu plucky/main armhf libmnl0 armhf 1.0.5-3 [10.7 kB] 108s Get:54 http://ftpmaster.internal/ubuntu plucky/main armhf iproute2 armhf 6.10.0-2ubuntu1 [1082 kB] 108s Get:55 http://ftpmaster.internal/ubuntu plucky/main armhf libfastjson4 armhf 1.2304.0-2 [20.2 kB] 108s Get:56 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-c5 armhf 0.18+ds-1 [33.2 kB] 108s Get:57 http://ftpmaster.internal/ubuntu plucky/main armhf libkeyutils1 armhf 1.6.3-4ubuntu2 [8712 B] 108s Get:58 http://ftpmaster.internal/ubuntu plucky/main armhf netplan-generator armhf 1.1.1-1 [60.4 kB] 108s Get:59 http://ftpmaster.internal/ubuntu plucky/main armhf python3-cffi-backend armhf 1.17.1-2 [68.7 kB] 108s Get:60 http://ftpmaster.internal/ubuntu plucky/main armhf python3-netplan armhf 1.1.1-1 [24.1 kB] 108s Get:61 http://ftpmaster.internal/ubuntu plucky/main armhf netplan.io armhf 1.1.1-1 [66.4 kB] 108s Get:62 http://ftpmaster.internal/ubuntu plucky/main armhf libnetplan1 armhf 1.1.1-1 [122 kB] 108s Get:63 http://ftpmaster.internal/ubuntu plucky/main armhf libpopt0 armhf 1.19+dfsg-2 [25.4 kB] 108s Get:64 http://ftpmaster.internal/ubuntu plucky/main armhf vim-tiny armhf 2:9.1.0777-1ubuntu1 [693 kB] 108s Get:65 http://ftpmaster.internal/ubuntu plucky/main armhf vim-common all 2:9.1.0777-1ubuntu1 [394 kB] 108s Get:66 http://ftpmaster.internal/ubuntu plucky/main armhf xxd armhf 2:9.1.0777-1ubuntu1 [66.8 kB] 108s Get:67 http://ftpmaster.internal/ubuntu plucky/main armhf bash-completion all 1:2.14.0-2 [210 kB] 108s Get:68 http://ftpmaster.internal/ubuntu plucky/main armhf info armhf 7.1.1-1 [126 kB] 109s Get:69 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm-common all 2.4.123-1 [8436 B] 109s Get:70 http://ftpmaster.internal/ubuntu plucky/main armhf libdrm2 armhf 2.4.123-1 [36.5 kB] 109s Get:71 http://ftpmaster.internal/ubuntu plucky/main armhf libevdev2 armhf 1.13.3+dfsg-1 [29.7 kB] 109s Get:72 http://ftpmaster.internal/ubuntu plucky/main armhf libmaxminddb0 armhf 1.11.0-1 [16.8 kB] 109s Get:73 http://ftpmaster.internal/ubuntu plucky/main armhf libnetfilter-conntrack3 armhf 1.1.0-1 [38.4 kB] 109s Get:74 http://ftpmaster.internal/ubuntu plucky/main armhf libnghttp2-14 armhf 1.64.0-1 [68.9 kB] 109s Get:75 http://ftpmaster.internal/ubuntu plucky/main armhf libpipeline1 armhf 1.5.8-1 [26.9 kB] 109s Get:76 http://ftpmaster.internal/ubuntu plucky/main armhf libpng16-16t64 armhf 1.6.44-2 [168 kB] 109s Get:77 http://ftpmaster.internal/ubuntu plucky/main armhf libplymouth5 armhf 24.004.60-1ubuntu11 [140 kB] 109s Get:78 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1-plugin armhf 1:1.8.3-1ubuntu1 [18.1 kB] 109s Get:79 http://ftpmaster.internal/ubuntu plucky/main armhf libtraceevent1 armhf 1:1.8.3-1ubuntu1 [52.1 kB] 109s Get:80 http://ftpmaster.internal/ubuntu plucky/main armhf liburcu8t64 armhf 0.14.1-1 [56.6 kB] 109s Get:81 http://ftpmaster.internal/ubuntu plucky/main armhf libuv1t64 armhf 1.48.0-7 [83.3 kB] 109s Get:82 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-data all 2:1.8.10-2 [116 kB] 109s Get:83 http://ftpmaster.internal/ubuntu plucky/main armhf libx11-6 armhf 2:1.8.10-2 [587 kB] 109s Get:84 http://ftpmaster.internal/ubuntu plucky/main armhf libxau6 armhf 1:1.0.11-1 [6558 B] 109s Get:85 http://ftpmaster.internal/ubuntu plucky/main armhf nano armhf 8.2-1 [276 kB] 109s Get:86 http://ftpmaster.internal/ubuntu plucky/main armhf pci.ids all 0.0~2024.10.24-1 [279 kB] 109s Get:87 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth-theme-ubuntu-text armhf 24.004.60-1ubuntu11 [9920 B] 109s Get:88 http://ftpmaster.internal/ubuntu plucky/main armhf plymouth armhf 24.004.60-1ubuntu11 [142 kB] 109s Get:89 http://ftpmaster.internal/ubuntu plucky/main armhf python3.12-gdbm armhf 3.12.7-3 [28.7 kB] 109s Get:90 http://ftpmaster.internal/ubuntu plucky/main armhf python3.13-gdbm armhf 3.13.0-2 [29.5 kB] 109s Get:91 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf python3-gdbm armhf 3.12.7-1 [8642 B] 109s Get:92 http://ftpmaster.internal/ubuntu plucky/main armhf ufw all 0.36.2-8 [170 kB] 109s Get:93 http://ftpmaster.internal/ubuntu plucky/main armhf usbutils armhf 1:018-1 [76.1 kB] 109s Get:94 http://ftpmaster.internal/ubuntu plucky/main armhf dpkg-dev all 1.22.11ubuntu3 [1088 kB] 109s Get:95 http://ftpmaster.internal/ubuntu plucky/main armhf libdpkg-perl all 1.22.11ubuntu3 [279 kB] 109s Get:96 http://ftpmaster.internal/ubuntu plucky/main armhf libarchive13t64 armhf 3.7.4-1.1 [331 kB] 109s Get:97 http://ftpmaster.internal/ubuntu plucky/main armhf libftdi1-2 armhf 1.5-7 [25.7 kB] 109s Get:98 http://ftpmaster.internal/ubuntu plucky/main armhf libflashrom1 armhf 1.4.0-3ubuntu1 [141 kB] 109s Get:99 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-common all 1.10.0+ds-2 [5502 B] 109s Get:100 http://ftpmaster.internal/ubuntu plucky/main armhf libjson-glib-1.0-0 armhf 1.10.0+ds-2 [61.6 kB] 109s Get:101 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd2 armhf 1.9.26-2 [125 kB] 109s Get:102 http://ftpmaster.internal/ubuntu plucky/main armhf libxmlb2 armhf 0.3.21-1 [57.7 kB] 109s Get:103 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 1.9.26-2 [4404 kB] 110s Get:104 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-utils3 armhf 3.2.1-1 [17.4 kB] 110s Get:105 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-crypto3 armhf 3.2.1-1 [22.4 kB] 110s Get:106 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-fs3 armhf 3.2.1-1 [34.3 kB] 110s Get:107 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-loop3 armhf 3.2.1-1 [6552 B] 110s Get:108 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize1 armhf 2.11-1ubuntu1 [12.0 kB] 110s Get:109 http://ftpmaster.internal/ubuntu plucky/main armhf libbytesize-common all 2.11-1ubuntu1 [3584 B] 110s Get:110 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-mdraid3 armhf 3.2.1-1 [13.4 kB] 110s Get:111 http://ftpmaster.internal/ubuntu plucky/main armhf libnvme1t64 armhf 1.11-1 [73.8 kB] 110s Get:112 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-nvme3 armhf 3.2.1-1 [17.6 kB] 110s Get:113 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-part3 armhf 3.2.1-1 [16.5 kB] 110s Get:114 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev-swap3 armhf 3.2.1-1 [8952 B] 110s Get:115 http://ftpmaster.internal/ubuntu plucky/main armhf libblockdev3 armhf 3.2.1-1 [44.2 kB] 110s Get:116 http://ftpmaster.internal/ubuntu plucky/main armhf libgpgme11t64 armhf 1.23.2-5ubuntu4 [123 kB] 110s Get:117 http://ftpmaster.internal/ubuntu plucky/main armhf libinih1 armhf 58-1ubuntu1 [6750 B] 110s Get:118 http://ftpmaster.internal/ubuntu plucky/main armhf libldap-common all 2.6.8+dfsg-1~exp4ubuntu3 [32.3 kB] 110s Get:119 http://ftpmaster.internal/ubuntu plucky/main armhf libldap2 armhf 2.6.8+dfsg-1~exp4ubuntu3 [173 kB] 110s Get:120 http://ftpmaster.internal/ubuntu plucky/main armhf libnspr4 armhf 2:4.35-1.1ubuntu2 [94.1 kB] 110s Get:121 http://ftpmaster.internal/ubuntu plucky/main armhf libsgutils2-1.46-2 armhf 1.46-3ubuntu5 [82.5 kB] 110s Get:122 http://ftpmaster.internal/ubuntu plucky/main armhf libssh2-1t64 armhf 1.11.1-1 [116 kB] 110s Get:123 http://ftpmaster.internal/ubuntu plucky/main armhf udisks2 armhf 2.10.1-11ubuntu1 [278 kB] 110s Get:124 http://ftpmaster.internal/ubuntu plucky/main armhf libudisks2-0 armhf 2.10.1-11ubuntu1 [142 kB] 110s Get:125 http://ftpmaster.internal/ubuntu plucky/main armhf python3-certifi all 2024.8.30+dfsg-1 [9742 B] 110s Get:126 http://ftpmaster.internal/ubuntu plucky/main armhf python3-configobj all 5.0.9-1 [33.9 kB] 110s Get:127 http://ftpmaster.internal/ubuntu plucky/main armhf python3-idna all 3.8-2 [47.0 kB] 110s Get:128 http://ftpmaster.internal/ubuntu plucky/main armhf python3-more-itertools all 10.5.0-1 [56.2 kB] 110s Get:129 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jaraco.functools all 4.1.0-1 [11.8 kB] 110s Get:130 http://ftpmaster.internal/ubuntu plucky/main armhf python3-json-pointer all 2.4-2 [8396 B] 110s Get:131 http://ftpmaster.internal/ubuntu plucky/main armhf python3-jsonpatch all 1.32-4 [12.2 kB] 110s Get:132 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.uri all 1.0.6-4 [13.6 kB] 110s Get:133 http://ftpmaster.internal/ubuntu plucky/main armhf python3-wadllib all 2.0.0-1 [36.7 kB] 110s Get:134 http://ftpmaster.internal/ubuntu plucky/main armhf python3-oauthlib all 3.2.2-2 [89.8 kB] 110s Get:135 http://ftpmaster.internal/ubuntu plucky/main armhf python3-lazr.restfulclient all 0.14.6-2 [50.9 kB] 110s Get:136 http://ftpmaster.internal/ubuntu plucky/main armhf python3-typeguard all 4.4.1-1 [29.0 kB] 110s Get:137 http://ftpmaster.internal/ubuntu plucky/main armhf python3-urllib3 all 2.0.7-2ubuntu0.1 [93.1 kB] 110s Get:138 http://ftpmaster.internal/ubuntu plucky/main armhf python3-zipp all 3.21.0-1 [10.2 kB] 110s Get:139 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils armhf 1.46-3ubuntu5 [816 kB] 110s Get:140 http://ftpmaster.internal/ubuntu plucky/main armhf sg3-utils-udev all 1.46-3ubuntu5 [5916 B] 110s Get:141 http://ftpmaster.internal/ubuntu plucky/main armhf systemd-cryptsetup armhf 256.5-2ubuntu4 [122 kB] 110s Get:142 http://ftpmaster.internal/ubuntu plucky/main armhf ssh-import-id all 5.11-0ubuntu3 [10.1 kB] 111s Preconfiguring packages ... 111s Fetched 44.4 MB in 4s (12.0 MB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59386 files and directories currently installed.) 111s Preparing to unpack .../motd-news-config_13.5ubuntu3_all.deb ... 111s Unpacking motd-news-config (13.5ubuntu3) over (13.3ubuntu6) ... 111s Preparing to unpack .../base-files_13.5ubuntu3_armhf.deb ... 112s Unpacking base-files (13.5ubuntu3) over (13.3ubuntu6) ... 112s Setting up base-files (13.5ubuntu3) ... 112s Installing new version of config file /etc/issue ... 112s Installing new version of config file /etc/issue.net ... 112s Installing new version of config file /etc/lsb-release ... 112s motd-news.service is a disabled or a static unit not running, not starting it. 112s (Reading database ... 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udisks2 (2.10.1-11ubuntu1) ... 132s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 132s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 132s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 132s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 132s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 132s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 132s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 132s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 132s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 132s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 132s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 132s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 132s loop8: Failed to write 'change' to '/sys/devices/virtual/block/loop8/uevent': Permission denied 132s Setting up systemd-sysv (256.5-2ubuntu4) ... 132s Setting up openssh-server (1:9.7p1-7ubuntu5) ... 133s Setting up plymouth (24.004.60-1ubuntu11) ... 133s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 134s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 134s Setting up libfwupd2:armhf (1.9.26-2) ... 134s Setting up libnss-systemd:armhf (256.5-2ubuntu4) ... 134s Setting up python3 (3.12.7-1) ... 134s Setting up python3-zipp (3.21.0-1) ... 134s Setting up dpkg-dev (1.22.11ubuntu3) ... 134s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu11) ... 134s update-initramfs: deferring update (trigger activated) 134s Setting up python3-oauthlib (3.2.2-2) ... 135s Setting up python3-configobj (5.0.9-1) ... 135s Setting up python3-certifi (2024.8.30+dfsg-1) ... 135s Setting up python3-gi (3.50.0-3) ... 135s Setting up python3-idna (3.8-2) ... 135s Setting up python3-urllib3 (2.0.7-2ubuntu0.1) ... 135s Setting up python3-json-pointer (2.4-2) ... 136s Setting up libpam-systemd:armhf (256.5-2ubuntu4) ... 136s Setting up fwupd (1.9.26-2) ... 136s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 136s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 136s fwupd.service is a disabled or a static unit not running, not starting it. 136s Setting up python3-cffi-backend:armhf (1.17.1-2) ... 136s Setting up python3-more-itertools (10.5.0-1) ... 137s Setting up python3-jaraco.functools (4.1.0-1) ... 137s Setting up python3-gdbm:armhf (3.12.7-1) ... 137s Setting up python3-problem-report (2.30.0-0ubuntu5) ... 137s Setting up ssh-import-id (5.11-0ubuntu3) ... 137s Setting up python3-jsonpatch (1.32-4) ... 137s Setting up python3-typeguard (4.4.1-1) ... 137s Setting up ufw (0.36.2-8) ... 138s Setting up python3-lazr.uri (1.0.6-4) ... 139s Setting up python3-apport (2.30.0-0ubuntu5) ... 139s Setting up python3-wadllib (2.0.0-1) ... 139s Setting up python3-netplan (1.1.1-1) ... 139s Setting up python3-lazr.restfulclient (0.14.6-2) ... 139s Setting up netplan.io (1.1.1-1) ... 139s Setting up apport-core-dump-handler (2.30.0-0ubuntu5) ... 140s Setting up apport (2.30.0-0ubuntu5) ... 140s Installing new version of config file /etc/apport/crashdb.conf ... 141s apport-autoreport.service is a disabled or a static unit not running, not starting it. 141s Processing triggers for dbus (1.14.10-4ubuntu5) ... 141s Processing triggers for shared-mime-info (2.4-5) ... 141s Processing triggers for install-info (7.1.1-1) ... 141s Processing triggers for initramfs-tools (0.142ubuntu34) ... 141s Processing triggers for libc-bin (2.40-1ubuntu3) ... 141s Processing triggers for rsyslog (8.2406.0-1ubuntu2) ... 142s Processing triggers for man-db (2.12.1-3) ... 143s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s The following packages will be REMOVED: 144s libperl5.38t64* perl-modules-5.38* python3-netifaces* 145s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 145s After this operation, 41.7 MB disk space will be freed. 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 61506 files and directories currently installed.) 145s Removing libperl5.38t64:armhf (5.38.2-5) ... 145s Removing perl-modules-5.38 (5.38.2-5) ... 145s Removing python3-netifaces:armhf (0.11.0-2build3) ... 145s Processing triggers for man-db (2.12.1-3) ... 145s Processing triggers for libc-bin (2.40-1ubuntu3) ... 147s autopkgtest [10:38:22]: rebooting testbed after setup commands that affected boot 214s autopkgtest [10:39:29]: testbed running kernel: Linux 6.8.0-47-generic #47~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Oct 2 16:39:14 UTC 2 241s autopkgtest [10:39:56]: @@@@@@@@@@@@@@@@@@@@ apt-source cnvkit 252s Get:1 http://ftpmaster.internal/ubuntu plucky/universe cnvkit 0.9.10-2 (dsc) [2449 B] 252s Get:2 http://ftpmaster.internal/ubuntu plucky/universe cnvkit 0.9.10-2 (tar) [23.7 MB] 252s Get:3 http://ftpmaster.internal/ubuntu plucky/universe cnvkit 0.9.10-2 (diff) [17.7 kB] 252s gpgv: Signature made Mon Apr 8 08:42:55 2024 UTC 252s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 252s gpgv: Can't check signature: No public key 252s dpkg-source: warning: cannot verify inline signature for ./cnvkit_0.9.10-2.dsc: no acceptable signature found 253s autopkgtest [10:40:08]: testing package cnvkit version 0.9.10-2 255s autopkgtest [10:40:10]: build not needed 260s autopkgtest [10:40:15]: test run-unit-test: preparing testbed 270s Reading package lists... 271s Building dependency tree... 271s Reading state information... 271s Starting pkgProblemResolver with broken count: 1 271s Starting 2 pkgProblemResolver with broken count: 1 271s Investigating (0) cnvkit:armhf < none -> 0.9.10-2 @un puN Ib > 271s Broken cnvkit:armhf Depends on python3-biopython:armhf < none | 1.84+dfsg-4 @un uH > 271s Considering python3-biopython:armhf 1 as a solution to cnvkit:armhf 0 271s Re-Instated libblas3:armhf 271s Re-Instated libgfortran5:armhf 271s Re-Instated liblapack3:armhf 271s Re-Instated python3-numpy:armhf 271s Re-Instated libgomp1:armhf 271s Re-Instated libimagequant0:armhf 271s Re-Instated libgraphite2-3:armhf 271s Re-Instated libharfbuzz0b:armhf 271s Re-Instated libraqm0:armhf 271s Re-Instated libwebpdemux2:armhf 271s Re-Instated libwebpmux3:armhf 271s Re-Instated python3-pil:armhf 271s Re-Instated python3-cairo:armhf 271s Re-Instated python3-freetype:armhf 271s Re-Instated python3-rlpycairo:armhf 271s Re-Instated libfontenc1:armhf 271s Re-Instated x11-common:armhf 271s Re-Instated xfonts-encodings:armhf 271s Re-Instated xfonts-utils:armhf 271s Re-Instated fonts-urw-base35:armhf 271s Re-Instated python3-reportlab:armhf 271s Re-Instated sgml-base:armhf 271s Re-Instated xml-core:armhf 271s Re-Instated w3c-sgml-lib:armhf 271s Re-Instated python3-biopython:armhf 271s Broken cnvkit:armhf Depends on python3-matplotlib:armhf < none | 3.8.3-3 @un uH > 271s Considering python3-matplotlib:armhf 1 as a solution to cnvkit:armhf 0 271s Re-Instated libjs-jquery:armhf 271s Re-Instated libjs-jquery-ui:armhf 271s Re-Instated fonts-lyx:armhf 271s Re-Instated python-matplotlib-data:armhf 271s Re-Instated python3-six:armhf 271s Re-Instated python3-dateutil:armhf 271s Re-Instated libtcl8.6:armhf 271s Re-Instated libxft2:armhf 271s Re-Instated libxss1:armhf 271s Re-Instated libtk8.6:armhf 271s Re-Instated python3.12-tk:armhf 271s Re-Instated python3.13-tk:armhf 271s Re-Instated tk8.6-blt2.5:armhf 271s Re-Instated blt:armhf 271s Re-Instated python3-tk:armhf 271s Re-Instated python3-pil.imagetk:armhf 271s Re-Instated python3-contourpy:armhf 271s Re-Instated python3-cycler:armhf 271s Re-Instated python3-brotli:armhf 271s Re-Instated python3-decorator:armhf 271s Re-Instated liblbfgsb0:armhf 271s Re-Instated python3-scipy:armhf 271s Re-Instated python3-ufolib2:armhf 271s Re-Instated python3-mpmath:armhf 271s Re-Instated python3-sympy:armhf 271s Re-Instated python3-tz:armhf 271s Re-Instated python3-appdirs:armhf 271s Re-Instated python3-fs:armhf 271s Re-Instated libxslt1.1:armhf 271s Re-Instated python3-lxml:armhf 271s Re-Instated python3-lz4:armhf 271s Re-Instated python3-unicodedata2:armhf 271s Re-Instated unicode-data:armhf 271s Re-Instated python3-fonttools:armhf 271s Re-Instated python3-kiwisolver:armhf 271s Re-Instated python3-packaging:armhf 271s Re-Instated libqhull-r8.0:armhf 271s Re-Instated python3-matplotlib:armhf 271s Broken cnvkit:armhf Depends on python3-pandas:armhf < none | 2.2.3+dfsg-5 @un uH > 271s Considering python3-pandas:armhf 1 as a solution to cnvkit:armhf 0 271s Re-Instated python3-pandas-lib:armhf 271s Re-Instated python3-pandas:armhf 271s Broken cnvkit:armhf Depends on python3-pomegranate:armhf < none | 0.14.8-6 @un uH > 271s Considering python3-pomegranate:armhf 1 as a solution to cnvkit:armhf 0 271s Re-Instated python3-joblib:armhf 271s Re-Instated python3-networkx:armhf 271s Re-Instated python3-pomegranate:armhf 271s Broken cnvkit:armhf Depends on python3-pyfaidx:armhf < none | 0.8.1.3-1 @un uH > 271s Considering python3-pyfaidx:armhf 1 as a solution to cnvkit:armhf 0 271s Re-Instated python3-importlib-metadata:armhf 271s Re-Instated python3-pyfaidx:armhf 271s Broken cnvkit:armhf Depends on python3-pysam:armhf < none | 0.22.1+ds-2 @un uH > 271s Considering python3-pysam:armhf 1 as a solution to cnvkit:armhf 0 271s Re-Instated libhtscodecs2:armhf 271s Re-Instated libhts3t64:armhf 271s Re-Instated python3-pysam:armhf 271s Broken cnvkit:armhf Depends on python3-sklearn:armhf < none | 1.4.2+dfsg-6 @un uH > 271s Considering python3-sklearn:armhf 1 as a solution to cnvkit:armhf 0 271s Re-Instated python3-threadpoolctl:armhf 271s Re-Instated python3-sklearn-lib:armhf 271s Re-Instated python3-sklearn:armhf 271s Broken cnvkit:armhf Depends on r-bioc-dnacopy:armhf < none @un H > 271s Done 271s Some packages could not be installed. This may mean that you have 271s requested an impossible situation or if you are using the unstable 271s distribution that some required packages have not yet been created 271s or been moved out of Incoming. 271s The following information may help to resolve the situation: 271s 271s The following packages have unmet dependencies: 272s cnvkit : Depends: r-bioc-dnacopy but it is not installable 272s E: Unable to correct problems, you have held broken packages. 272s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from plucky-proposed 278s Reading package lists... 278s Building dependency tree... 278s Reading state information... 278s Starting pkgProblemResolver with broken count: 1 279s Starting 2 pkgProblemResolver with broken count: 1 279s Investigating (0) cnvkit:armhf < none -> 0.9.10-2 @un puN Ib > 279s Broken cnvkit:armhf Depends on python3-biopython:armhf < none | 1.84+dfsg-4 @un uH > 279s Considering python3-biopython:armhf 1 as a solution to cnvkit:armhf 0 279s Re-Instated libblas3:armhf 279s Re-Instated libgfortran5:armhf 279s Re-Instated liblapack3:armhf 279s Re-Instated python3-numpy:armhf 279s Re-Instated libgomp1:armhf 279s Re-Instated libimagequant0:armhf 279s Re-Instated libgraphite2-3:armhf 279s Re-Instated libharfbuzz0b:armhf 279s Re-Instated libraqm0:armhf 279s Re-Instated libwebpdemux2:armhf 279s Re-Instated libwebpmux3:armhf 279s Re-Instated python3-pil:armhf 279s Re-Instated python3-cairo:armhf 279s Re-Instated python3-freetype:armhf 279s Re-Instated python3-rlpycairo:armhf 279s Re-Instated libfontenc1:armhf 279s Re-Instated x11-common:armhf 279s Re-Instated xfonts-encodings:armhf 279s Re-Instated xfonts-utils:armhf 279s Re-Instated fonts-urw-base35:armhf 279s Re-Instated python3-reportlab:armhf 279s Re-Instated sgml-base:armhf 279s Re-Instated xml-core:armhf 279s Re-Instated w3c-sgml-lib:armhf 279s Re-Instated python3-biopython:armhf 279s Broken cnvkit:armhf Depends on python3-matplotlib:armhf < none | 3.8.3-3 @un uH > 279s Considering python3-matplotlib:armhf 1 as a solution to cnvkit:armhf 0 279s Re-Instated libjs-jquery:armhf 279s Re-Instated libjs-jquery-ui:armhf 279s Re-Instated fonts-lyx:armhf 279s Re-Instated python-matplotlib-data:armhf 279s Re-Instated python3-dateutil:armhf 279s Re-Instated libtcl8.6:armhf 279s Re-Instated libxft2:armhf 279s Re-Instated libxss1:armhf 279s Re-Instated libtk8.6:armhf 279s Re-Instated python3.12-tk:armhf 279s Re-Instated python3.13-tk:armhf 279s Re-Instated tk8.6-blt2.5:armhf 279s Re-Instated blt:armhf 279s Re-Instated python3-tk:armhf 279s Re-Instated python3-pil.imagetk:armhf 279s Re-Instated python3-contourpy:armhf 279s Re-Instated python3-cycler:armhf 279s Re-Instated python3-brotli:armhf 279s Re-Instated python3-decorator:armhf 279s Re-Instated liblbfgsb0:armhf 279s Re-Instated python3-scipy:armhf 279s Re-Instated python3-ufolib2:armhf 279s Re-Instated python3-mpmath:armhf 279s Re-Instated python3-sympy:armhf 279s Re-Instated python3-tz:armhf 279s Re-Instated python3-six:armhf 279s Re-Instated python3-appdirs:armhf 279s Re-Instated python3-fs:armhf 279s Re-Instated libxslt1.1:armhf 279s Re-Instated python3-lxml:armhf 279s Re-Instated python3-lz4:armhf 279s Re-Instated python3-unicodedata2:armhf 279s Re-Instated unicode-data:armhf 279s Re-Instated python3-fonttools:armhf 279s Re-Instated python3-kiwisolver:armhf 279s Re-Instated python3-packaging:armhf 279s Re-Instated libqhull-r8.0:armhf 279s Re-Instated python3-matplotlib:armhf 279s Broken cnvkit:armhf Depends on python3-pandas:armhf < none | 2.2.3+dfsg-5 @un uH > 279s Considering python3-pandas:armhf 1 as a solution to cnvkit:armhf 0 279s Re-Instated python3-pandas-lib:armhf 279s Re-Instated python3-pandas:armhf 279s Broken cnvkit:armhf Depends on python3-pomegranate:armhf < none | 0.14.8-6 @un uH > 279s Considering python3-pomegranate:armhf 1 as a solution to cnvkit:armhf 0 279s Re-Instated python3-joblib:armhf 279s Re-Instated python3-networkx:armhf 279s Re-Instated python3-pomegranate:armhf 279s Broken cnvkit:armhf Depends on python3-pyfaidx:armhf < none | 0.8.1.3-1 @un uH > 279s Considering python3-pyfaidx:armhf 1 as a solution to cnvkit:armhf 0 279s Re-Instated python3-importlib-metadata:armhf 279s Re-Instated python3-pyfaidx:armhf 279s Broken cnvkit:armhf Depends on python3-pysam:armhf < none | 0.22.1+ds-2 @un uH > 279s Considering python3-pysam:armhf 1 as a solution to cnvkit:armhf 0 279s Re-Instated libhtscodecs2:armhf 279s Re-Instated libhts3t64:armhf 279s Re-Instated python3-pysam:armhf 279s Broken cnvkit:armhf Depends on python3-sklearn:armhf < none | 1.4.2+dfsg-6 @un uH > 279s Considering python3-sklearn:armhf 1 as a solution to cnvkit:armhf 0 279s Re-Instated python3-threadpoolctl:armhf 279s Re-Instated python3-sklearn-lib:armhf 279s Re-Instated python3-sklearn:armhf 279s Broken cnvkit:armhf Depends on r-bioc-dnacopy:armhf < none @un H > 279s Done 279s Some packages could not be installed. This may mean that you have 279s requested an impossible situation or if you are using the unstable 279s distribution that some required packages have not yet been created 279s or been moved out of Incoming. 279s The following information may help to resolve the situation: 279s 279s The following packages have unmet dependencies: 279s cnvkit : Depends: r-bioc-dnacopy but it is not installable 279s E: Unable to correct problems, you have held broken packages. 279s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 281s Reading package lists... 281s Building dependency tree... 281s Reading state information... 282s Starting pkgProblemResolver with broken count: 1 282s Starting 2 pkgProblemResolver with broken count: 1 282s Investigating (0) cnvkit:armhf < none -> 0.9.10-2 @un puN Ib > 282s Broken cnvkit:armhf Depends on python3-biopython:armhf < none | 1.84+dfsg-4 @un uH > 282s Considering python3-biopython:armhf 1 as a solution to cnvkit:armhf 9999 282s Re-Instated libblas3:armhf 282s Re-Instated libgfortran5:armhf 282s Re-Instated liblapack3:armhf 282s Re-Instated python3-numpy:armhf 282s Re-Instated libgomp1:armhf 282s Re-Instated libimagequant0:armhf 282s Re-Instated libgraphite2-3:armhf 282s Re-Instated libharfbuzz0b:armhf 282s Re-Instated libraqm0:armhf 282s Re-Instated libwebpdemux2:armhf 282s Re-Instated libwebpmux3:armhf 282s Re-Instated python3-pil:armhf 282s Re-Instated python3-cairo:armhf 282s Re-Instated python3-freetype:armhf 282s Re-Instated python3-rlpycairo:armhf 282s Re-Instated libfontenc1:armhf 282s Re-Instated x11-common:armhf 282s Re-Instated xfonts-encodings:armhf 282s Re-Instated xfonts-utils:armhf 282s Re-Instated fonts-urw-base35:armhf 282s Re-Instated python3-reportlab:armhf 282s Re-Instated sgml-base:armhf 282s Re-Instated xml-core:armhf 282s Re-Instated w3c-sgml-lib:armhf 282s Re-Instated python3-biopython:armhf 282s Broken cnvkit:armhf Depends on python3-matplotlib:armhf < none | 3.8.3-3 @un uH > 282s Considering python3-matplotlib:armhf 1 as a solution to cnvkit:armhf 9999 282s Re-Instated libjs-jquery:armhf 282s Re-Instated libjs-jquery-ui:armhf 282s Re-Instated fonts-lyx:armhf 282s Re-Instated python-matplotlib-data:armhf 282s Re-Instated python3-dateutil:armhf 282s Re-Instated libtcl8.6:armhf 282s Re-Instated libxft2:armhf 282s Re-Instated libxss1:armhf 282s Re-Instated libtk8.6:armhf 282s Re-Instated python3.12-tk:armhf 282s Re-Instated python3.13-tk:armhf 282s Re-Instated tk8.6-blt2.5:armhf 282s Re-Instated blt:armhf 282s Re-Instated python3-tk:armhf 282s Re-Instated python3-pil.imagetk:armhf 282s Re-Instated python3-contourpy:armhf 282s Re-Instated python3-cycler:armhf 282s Re-Instated python3-brotli:armhf 282s Re-Instated python3-decorator:armhf 282s Re-Instated liblbfgsb0:armhf 282s Re-Instated python3-scipy:armhf 282s Re-Instated python3-ufolib2:armhf 282s Re-Instated python3-mpmath:armhf 282s Re-Instated python3-sympy:armhf 282s Re-Instated python3-tz:armhf 282s Re-Instated python3-six:armhf 282s Re-Instated python3-appdirs:armhf 282s Re-Instated python3-fs:armhf 282s Re-Instated libxslt1.1:armhf 282s Re-Instated python3-lxml:armhf 282s Re-Instated python3-lz4:armhf 282s Re-Instated python3-unicodedata2:armhf 282s Re-Instated unicode-data:armhf 282s Re-Instated python3-fonttools:armhf 282s Re-Instated python3-kiwisolver:armhf 282s Re-Instated python3-packaging:armhf 282s Re-Instated libqhull-r8.0:armhf 282s Re-Instated python3-matplotlib:armhf 282s Broken cnvkit:armhf Depends on python3-pandas:armhf < none | 2.2.3+dfsg-5 @un uH > 282s Considering python3-pandas:armhf 1 as a solution to cnvkit:armhf 9999 282s Re-Instated python3-pandas-lib:armhf 282s Re-Instated python3-pandas:armhf 282s Broken cnvkit:armhf Depends on python3-pomegranate:armhf < none | 0.14.8-6 @un uH > 282s Considering python3-pomegranate:armhf 1 as a solution to cnvkit:armhf 9999 282s Re-Instated python3-joblib:armhf 282s Re-Instated python3-networkx:armhf 282s Re-Instated python3-pomegranate:armhf 282s Broken cnvkit:armhf Depends on python3-pyfaidx:armhf < none | 0.8.1.3-1 @un uH > 282s Considering python3-pyfaidx:armhf 1 as a solution to cnvkit:armhf 9999 282s Re-Instated python3-importlib-metadata:armhf 282s Re-Instated python3-pyfaidx:armhf 282s Broken cnvkit:armhf Depends on python3-pysam:armhf < none | 0.22.1+ds-2 @un uH > 282s Considering python3-pysam:armhf 1 as a solution to cnvkit:armhf 9999 282s Re-Instated libhtscodecs2:armhf 282s Re-Instated libhts3t64:armhf 282s Re-Instated python3-pysam:armhf 282s Broken cnvkit:armhf Depends on python3-sklearn:armhf < none | 1.4.2+dfsg-6 @un uH > 282s Considering python3-sklearn:armhf 1 as a solution to cnvkit:armhf 9999 282s Re-Instated python3-threadpoolctl:armhf 282s Re-Instated python3-sklearn-lib:armhf 282s Re-Instated python3-sklearn:armhf 282s Broken cnvkit:armhf Depends on r-bioc-dnacopy:armhf < none @un H > 282s Done 282s Some packages could not be installed. This may mean that you have 282s requested an impossible situation or if you are using the unstable 282s distribution that some required packages have not yet been created 282s or been moved out of Incoming. 282s The following information may help to resolve the situation: 282s 282s The following packages have unmet dependencies: 282s cnvkit : Depends: r-bioc-dnacopy but it is not installable 282s E: Unable to correct problems, you have held broken packages. 282s run-unit-test SKIP installation fails and skip-not-installable set 282s autopkgtest [10:40:37]: test pybuild-autopkgtest: preparing testbed 292s Reading package lists... 292s Building dependency tree... 292s Reading state information... 293s Starting pkgProblemResolver with broken count: 1 293s Starting 2 pkgProblemResolver with broken count: 1 293s Investigating (0) autopkgtest-satdep:armhf < none -> 0 @un puN Ib > 293s Broken autopkgtest-satdep:armhf Depends on cnvkit:armhf < none | 0.9.10-2 @un uH > 293s Considering cnvkit:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 293s Re-Instated libblas3:armhf 293s Re-Instated libgfortran5:armhf 293s Re-Instated liblapack3:armhf 293s Re-Instated python3-numpy:armhf 293s Re-Instated libfreetype6:armhf 293s Re-Instated libgomp1:armhf 293s Re-Instated libimagequant0:armhf 293s Re-Instated libjpeg-turbo8:armhf 293s Re-Instated libjpeg8:armhf 293s Re-Instated liblcms2-2:armhf 293s Re-Instated libopenjp2-7:armhf 293s Re-Instated libgraphite2-3:armhf 293s Re-Instated libharfbuzz0b:armhf 293s Re-Instated libraqm0:armhf 293s Re-Instated libdeflate0:armhf 293s Re-Instated libjbig0:armhf 293s Re-Instated liblerc4:armhf 293s Re-Instated libsharpyuv0:armhf 293s Re-Instated libwebp7:armhf 293s Re-Instated libtiff6:armhf 293s Re-Instated libwebpdemux2:armhf 293s Re-Instated libwebpmux3:armhf 293s Re-Instated python3-pil:armhf 293s Re-Instated fonts-dejavu-mono:armhf 293s Re-Instated fonts-dejavu-core:armhf 293s Re-Instated fontconfig-config:armhf 293s Re-Instated libfontconfig1:armhf 293s Re-Instated libpixman-1-0:armhf 293s Re-Instated libxcb-render0:armhf 293s Re-Instated libxcb-shm0:armhf 293s Re-Instated libxrender1:armhf 293s Re-Instated libcairo2:armhf 293s Re-Instated python3-cairo:armhf 293s Re-Instated python3-freetype:armhf 293s Re-Instated python3-rlpycairo:armhf 293s Re-Instated libfontenc1:armhf 293s Re-Instated x11-common:armhf 293s Re-Instated xfonts-encodings:armhf 293s Re-Instated xfonts-utils:armhf 293s Re-Instated fonts-urw-base35:armhf 293s Re-Instated python3-reportlab:armhf 293s Re-Instated sgml-base:armhf 293s Re-Instated xml-core:armhf 293s Re-Instated w3c-sgml-lib:armhf 293s Re-Instated python3-biopython:armhf 293s Re-Instated libjs-jquery:armhf 293s Re-Instated libjs-jquery-ui:armhf 293s Re-Instated fonts-lyx:armhf 293s Re-Instated python-matplotlib-data:armhf 293s Re-Instated python3-dateutil:armhf 293s Re-Instated libtcl8.6:armhf 293s Re-Instated libxft2:armhf 293s Re-Instated libxss1:armhf 293s Re-Instated libtk8.6:armhf 293s Re-Instated python3.12-tk:armhf 293s Re-Instated python3.13-tk:armhf 293s Re-Instated tk8.6-blt2.5:armhf 293s Re-Instated blt:armhf 293s Re-Instated python3-tk:armhf 293s Re-Instated python3-pil.imagetk:armhf 293s Re-Instated python3-contourpy:armhf 293s Re-Instated python3-cycler:armhf 293s Re-Instated python3-brotli:armhf 293s Re-Instated python3-decorator:armhf 293s Re-Instated liblbfgsb0:armhf 293s Re-Instated python3-scipy:armhf 293s Re-Instated python3-ufolib2:armhf 293s Re-Instated python3-mpmath:armhf 293s Re-Instated python3-sympy:armhf 293s Re-Instated python3-tz:armhf 293s Re-Instated python3-six:armhf 293s Re-Instated python3-appdirs:armhf 293s Re-Instated python3-fs:armhf 293s Re-Instated libxslt1.1:armhf 293s Re-Instated python3-lxml:armhf 293s Re-Instated python3-lz4:armhf 293s Re-Instated python3-unicodedata2:armhf 293s Re-Instated unicode-data:armhf 293s Re-Instated python3-fonttools:armhf 293s Re-Instated python3-kiwisolver:armhf 293s Re-Instated python3-packaging:armhf 293s Re-Instated libqhull-r8.0:armhf 293s Re-Instated python3-matplotlib:armhf 293s Re-Instated python3-pandas-lib:armhf 293s Re-Instated python3-pandas:armhf 293s Re-Instated python3-joblib:armhf 293s Re-Instated python3-networkx:armhf 293s Re-Instated python3-pomegranate:armhf 293s Re-Instated python3-importlib-metadata:armhf 293s Re-Instated python3-pyfaidx:armhf 293s Re-Instated libhtscodecs2:armhf 293s Re-Instated libhts3t64:armhf 293s Re-Instated python3-pysam:armhf 293s Re-Instated python3-threadpoolctl:armhf 293s Re-Instated python3-sklearn-lib:armhf 293s Re-Instated python3-sklearn:armhf 293s Reinst Failed early because of r-bioc-dnacopy:armhf 293s Broken autopkgtest-satdep:armhf Depends on pybuild-plugin-autopkgtest:armhf < none | 6.20241024 @un uH > 293s Considering pybuild-plugin-autopkgtest:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 293s Re-Instated autotools-dev:armhf 293s Re-Instated m4:armhf 293s Re-Instated autoconf:armhf 293s Re-Instated automake:armhf 293s Re-Instated autopoint:armhf 293s Re-Instated libdebhelper-perl:armhf 293s Re-Instated libisl23:armhf 293s Re-Instated libmpc3:armhf 293s Re-Instated cpp-14-arm-linux-gnueabihf:armhf 293s Re-Instated cpp-14:armhf 293s Re-Instated cpp-arm-linux-gnueabihf:armhf 293s Re-Instated cpp:armhf 293s Re-Instated libcc1-0:armhf 293s Re-Instated libasan8:armhf 293s Re-Instated libubsan1:armhf 293s Re-Instated libgcc-14-dev:armhf 293s Re-Instated gcc-14-arm-linux-gnueabihf:armhf 293s Re-Instated gcc-14:armhf 293s Re-Instated gcc-arm-linux-gnueabihf:armhf 293s Re-Instated gcc:armhf 293s Re-Instated libc-dev-bin:armhf 293s Re-Instated linux-libc-dev:armhf 293s Re-Instated libcrypt1:armhf 293s Re-Instated libcrypt-dev:armhf 293s Re-Instated rpcsvc-proto:armhf 293s Re-Instated libc6-dev:armhf 293s Re-Instated libtool:armhf 293s Re-Instated dh-autoreconf:armhf 293s Re-Instated libarchive-zip-perl:armhf 293s Re-Instated libfile-stripnondeterminism-perl:armhf 293s Re-Instated dh-strip-nondeterminism:armhf 293s Re-Instated debugedit:armhf 293s Re-Instated dwz:armhf 293s Re-Instated gettext:armhf 293s Re-Instated intltool-debian:armhf 293s Re-Instated po-debconf:armhf 293s Re-Instated debhelper:armhf 293s Re-Instated dh-python:armhf 293s Re-Instated pybuild-plugin-autopkgtest:armhf 293s Broken autopkgtest-satdep:armhf Depends on python3-all:armhf < none | 3.12.7-1 @un uH > 293s Considering python3-all:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 293s Re-Instated libpython3.13-minimal:armhf 293s Re-Instated python3.13-minimal:armhf 293s Re-Instated libpython3.13-stdlib:armhf 293s Re-Instated python3.13:armhf 293s Re-Instated python3-all:armhf 293s Broken autopkgtest-satdep:armhf Depends on pybuild-plugin-pyproject:armhf < none | 6.20241024 @un uH > 293s Considering pybuild-plugin-pyproject:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 293s Re-Instated python3-pyproject-hooks:armhf 293s Re-Instated python3-toml:armhf 293s Re-Instated python3-wheel:armhf 293s Re-Instated python3-build:armhf 293s Re-Instated python3-installer:armhf 293s Re-Instated pybuild-plugin-pyproject:armhf 293s Broken autopkgtest-satdep:armhf Depends on python3-pytest:armhf < none | 8.3.3-1 @un uH > 293s Considering python3-pytest:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 293s Re-Instated python3-iniconfig:armhf 293s Re-Instated python3-pluggy:armhf 293s Re-Instated python3-pytest:armhf 293s Broken autopkgtest-satdep:armhf Depends on r-bioc-dnacopy:armhf < none @un H > 293s Broken autopkgtest-satdep:armhf Depends on poppler-utils:armhf < none | 24.08.0-3 @un uH > 293s Considering poppler-utils:armhf 1 as a solution to autopkgtest-satdep:armhf 9998 293s Re-Instated libgpgmepp6t64:armhf 293s Re-Instated libpoppler140:armhf 293s Re-Instated poppler-utils:armhf 293s Broken autopkgtest-satdep:armhf Depends on build-essential:armhf < none | 12.10ubuntu1 @un umH > 293s Considering build-essential:armhf 2 as a solution to autopkgtest-satdep:armhf 9998 293s Re-Instated libstdc++-14-dev:armhf 293s Re-Instated g++-14-arm-linux-gnueabihf:armhf 293s Re-Instated g++-14:armhf 293s Re-Instated g++-arm-linux-gnueabihf:armhf 293s Re-Instated g++:armhf 293s Re-Instated build-essential:armhf 293s Done 293s Some packages could not be installed. This may mean that you have 293s requested an impossible situation or if you are using the unstable 293s distribution that some required packages have not yet been created 293s or been moved out of Incoming. 293s The following information may help to resolve the situation: 293s 293s The following packages have unmet dependencies: 293s autopkgtest-satdep : Depends: cnvkit but it is not going to be installed 293s Depends: r-bioc-dnacopy but it is not installable 293s E: Unable to correct problems, you have held broken packages. 293s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 295s pybuild-autopkgtest SKIP installation fails and skip-not-installable set 295s autopkgtest [10:40:50]: @@@@@@@@@@@@@@@@@@@@ summary 295s run-unit-test SKIP installation fails and skip-not-installable set 295s pybuild-autopkgtest SKIP installation fails and skip-not-installable set