0s autopkgtest [10:53:37]: starting date and time: 2024-12-02 10:53:37+0000 0s autopkgtest [10:53:37]: git checkout: be626eda Fix armhf LXD image generation for plucky 0s autopkgtest [10:53:37]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.x9g8vefz/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:h5py --apt-upgrade bitshuffle --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu3 -- lxd -r lxd-armhf-10.145.243.142 lxd-armhf-10.145.243.142:autopkgtest/ubuntu/plucky/armhf 60s autopkgtest [10:54:37]: testbed dpkg architecture: armhf 63s autopkgtest [10:54:40]: testbed apt version: 2.9.14ubuntu1 69s autopkgtest [10:54:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 72s autopkgtest [10:54:49]: testbed release detected to be: None 83s autopkgtest [10:55:00]: updating testbed package index (apt update) 87s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 87s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [213 kB] 87s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 87s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 87s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [906 kB] 87s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 87s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [78.6 kB] 87s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.4 kB] 87s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [100 kB] 87s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [928 B] 87s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [744 kB] 87s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [8344 B] 87s Get:13 http://ftpmaster.internal/ubuntu plucky/universe Sources [20.7 MB] 89s Get:14 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [298 kB] 89s Get:15 http://ftpmaster.internal/ubuntu plucky/main Sources [1377 kB] 89s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1353 kB] 89s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.0 MB] 90s Get:18 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [174 kB] 93s Fetched 41.0 MB in 6s (6562 kB/s) 94s Reading package lists... 102s autopkgtest [10:55:19]: upgrading testbed (apt dist-upgrade and autopurge) 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 105s Starting 2 pkgProblemResolver with broken count: 0 105s Done 106s Entering ResolveByKeep 106s 107s The following packages will be upgraded: 107s fwupd libfwupd3 python3-software-properties software-properties-common 107s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 5190 kB of archives. 107s After this operation, 4096 B disk space will be freed. 107s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 2.0.2-2 [5020 kB] 107s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd3 armhf 2.0.2-2 [124 kB] 107s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf software-properties-common all 0.107 [16.5 kB] 107s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-software-properties all 0.107 [30.4 kB] 108s Fetched 5190 kB in 1s (6765 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 108s Preparing to unpack .../fwupd_2.0.2-2_armhf.deb ... 108s Unpacking fwupd (2.0.2-2) over (2.0.2-1) ... 108s Preparing to unpack .../libfwupd3_2.0.2-2_armhf.deb ... 108s Unpacking libfwupd3:armhf (2.0.2-2) over (2.0.2-1) ... 108s Preparing to unpack .../software-properties-common_0.107_all.deb ... 108s Unpacking software-properties-common (0.107) over (0.105) ... 108s Preparing to unpack .../python3-software-properties_0.107_all.deb ... 109s Unpacking python3-software-properties (0.107) over (0.105) ... 109s Setting up libfwupd3:armhf (2.0.2-2) ... 109s Setting up python3-software-properties (0.107) ... 109s Setting up fwupd (2.0.2-2) ... 109s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 109s fwupd.service is a disabled or a static unit not running, not starting it. 109s Setting up software-properties-common (0.107) ... 109s Processing triggers for libc-bin (2.40-1ubuntu3) ... 110s Processing triggers for man-db (2.13.0-1) ... 111s Processing triggers for dbus (1.14.10-4ubuntu5) ... 113s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s Starting pkgProblemResolver with broken count: 0 114s Starting 2 pkgProblemResolver with broken count: 0 114s Done 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [10:55:35]: rebooting testbed after setup commands that affected boot 199s autopkgtest [10:56:56]: testbed running kernel: Linux 6.8.0-49-generic #49~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Wed Nov 6 18:12:14 UTC 2 233s autopkgtest [10:57:30]: @@@@@@@@@@@@@@@@@@@@ apt-source bitshuffle 250s Get:1 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.2-1 (dsc) [2640 B] 250s Get:2 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.2-1 (tar) [197 kB] 250s Get:3 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.2-1 (diff) [7612 B] 250s gpgv: Signature made Tue Nov 19 11:16:33 2024 UTC 250s gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB 250s gpgv: issuer "picca@debian.org" 250s gpgv: Can't check signature: No public key 250s dpkg-source: warning: cannot verify inline signature for ./bitshuffle_0.5.2-1.dsc: no acceptable signature found 250s autopkgtest [10:57:47]: testing package bitshuffle version 0.5.2-1 253s autopkgtest [10:57:50]: build not needed 257s autopkgtest [10:57:54]: test command1: preparing testbed 260s Reading package lists... 261s Building dependency tree... 261s Reading state information... 261s Starting pkgProblemResolver with broken count: 0 261s Starting 2 pkgProblemResolver with broken count: 0 261s Done 262s The following NEW packages will be installed: 262s bitshuffle libaec0 libblas3 libgfortran5 libgomp1 libhdf5-103-1t64 262s libhdf5-hl-100t64 libhdf5-mpich-103-1t64 libhwloc15 liblapack3 liblzf1 262s libmpich12 libsz2 python3-h5py python3-h5py-serial python3-numpy 262s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 262s Need to get 13.0 MB of archives. 262s After this operation, 45.9 MB of additional disk space will be used. 262s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-4 [126 kB] 262s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 263s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-4 [2086 kB] 263s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11ubuntu1 [3975 kB] 263s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 263s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 263s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 263s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 263s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B] 263s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py-serial armhf 3.11.0-8ubuntu3 [1559 kB] 263s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py all 3.11.0-8ubuntu3 [7982 B] 263s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 263s Get:13 http://ftpmaster.internal/ubuntu plucky/universe armhf libhwloc15 armhf 2.11.2-1 [147 kB] 263s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf libmpich12 armhf 4.2.0-14 [1677 kB] 263s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-mpich-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1388 kB] 263s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf bitshuffle armhf 0.5.2-1 [177 kB] 263s Fetched 13.0 MB in 1s (12.8 MB/s) 264s Selecting previously unselected package libblas3:armhf. 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 264s Preparing to unpack .../00-libblas3_3.12.0-4_armhf.deb ... 264s Unpacking libblas3:armhf (3.12.0-4) ... 264s Selecting previously unselected package libgfortran5:armhf. 264s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 264s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 264s Selecting previously unselected package liblapack3:armhf. 264s Preparing to unpack .../02-liblapack3_3.12.0-4_armhf.deb ... 264s Unpacking liblapack3:armhf (3.12.0-4) ... 264s Selecting previously unselected package python3-numpy. 264s Preparing to unpack .../03-python3-numpy_1%3a1.26.4+ds-11ubuntu1_armhf.deb ... 264s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 264s Selecting previously unselected package libaec0:armhf. 264s Preparing to unpack .../04-libaec0_1.1.3-1_armhf.deb ... 264s Unpacking libaec0:armhf (1.1.3-1) ... 264s Selecting previously unselected package libsz2:armhf. 264s Preparing to unpack .../05-libsz2_1.1.3-1_armhf.deb ... 264s Unpacking libsz2:armhf (1.1.3-1) ... 264s Selecting previously unselected package libhdf5-103-1t64:armhf. 264s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 264s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 264s Selecting previously unselected package libhdf5-hl-100t64:armhf. 264s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 264s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 264s Selecting previously unselected package liblzf1:armhf. 264s Preparing to unpack .../08-liblzf1_3.6-4_armhf.deb ... 264s Unpacking liblzf1:armhf (3.6-4) ... 264s Selecting previously unselected package python3-h5py-serial. 264s Preparing to unpack .../09-python3-h5py-serial_3.11.0-8ubuntu3_armhf.deb ... 264s Unpacking python3-h5py-serial (3.11.0-8ubuntu3) ... 264s Selecting previously unselected package python3-h5py. 264s Preparing to unpack .../10-python3-h5py_3.11.0-8ubuntu3_all.deb ... 264s Unpacking python3-h5py (3.11.0-8ubuntu3) ... 264s Selecting previously unselected package libgomp1:armhf. 264s Preparing to unpack .../11-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 264s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 264s Selecting previously unselected package libhwloc15:armhf. 264s Preparing to unpack .../12-libhwloc15_2.11.2-1_armhf.deb ... 264s Unpacking libhwloc15:armhf (2.11.2-1) ... 264s Selecting previously unselected package libmpich12:armhf. 264s Preparing to unpack .../13-libmpich12_4.2.0-14_armhf.deb ... 264s Unpacking libmpich12:armhf (4.2.0-14) ... 264s Selecting previously unselected package libhdf5-mpich-103-1t64:armhf. 264s Preparing to unpack .../14-libhdf5-mpich-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 264s Unpacking libhdf5-mpich-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 264s Selecting previously unselected package bitshuffle. 265s Preparing to unpack .../15-bitshuffle_0.5.2-1_armhf.deb ... 265s Unpacking bitshuffle (0.5.2-1) ... 265s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 265s Setting up libaec0:armhf (1.1.3-1) ... 265s Setting up libblas3:armhf (3.12.0-4) ... 265s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 265s Setting up liblzf1:armhf (3.6-4) ... 265s Setting up libhwloc15:armhf (2.11.2-1) ... 265s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 265s Setting up libmpich12:armhf (4.2.0-14) ... 265s Setting up libsz2:armhf (1.1.3-1) ... 265s Setting up liblapack3:armhf (3.12.0-4) ... 265s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 265s Setting up libhdf5-mpich-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 265s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 267s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 267s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 267s Setting up python3-h5py-serial (3.11.0-8ubuntu3) ... 267s Setting up python3-h5py (3.11.0-8ubuntu3) ... 267s Setting up bitshuffle (0.5.2-1) ... 267s Processing triggers for man-db (2.13.0-1) ... 268s Processing triggers for libc-bin (2.40-1ubuntu3) ... 279s autopkgtest [10:58:16]: test command1: python3 -c 'import sys, h5py; sys.exit(not h5py.h5z.filter_avail(32008))' 279s autopkgtest [10:58:16]: test command1: [----------------------- 282s autopkgtest [10:58:19]: test command1: -----------------------] 288s autopkgtest [10:58:25]: test command1: - - - - - - - - - - results - - - - - - - - - - 288s command1 PASS 293s autopkgtest [10:58:30]: test command2: preparing testbed 295s Reading package lists... 296s Building dependency tree... 296s Reading state information... 296s Starting pkgProblemResolver with broken count: 0 296s Starting 2 pkgProblemResolver with broken count: 0 296s Done 297s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 308s autopkgtest [10:58:45]: test command2: H5PY_ALWAYS_USE_MPI=1 python3 -c 'import sys, h5py; sys.exit(not h5py.h5z.filter_avail(32008))' 308s autopkgtest [10:58:45]: test command2: [----------------------- 311s autopkgtest [10:58:48]: test command2: -----------------------] 318s command2 PASS 318s autopkgtest [10:58:55]: test command2: - - - - - - - - - - results - - - - - - - - - - 323s autopkgtest [10:59:00]: test testsuite: preparing testbed 381s autopkgtest [10:59:58]: testbed dpkg architecture: armhf 383s autopkgtest [11:00:00]: testbed apt version: 2.9.14ubuntu1 389s autopkgtest [11:00:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 392s autopkgtest [11:00:09]: testbed release detected to be: plucky 407s autopkgtest [11:00:24]: updating testbed package index (apt update) 412s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 412s Get:2 http://ftpmaster.internal/ubuntu plucky InRelease [213 kB] 413s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 413s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 413s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.4 kB] 413s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [906 kB] 413s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 413s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [78.6 kB] 413s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [100 kB] 413s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted armhf Packages [928 B] 413s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [744 kB] 413s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [8344 B] 413s Get:13 http://ftpmaster.internal/ubuntu plucky/main Sources [1377 kB] 413s Get:14 http://ftpmaster.internal/ubuntu plucky/multiverse Sources [298 kB] 413s Get:15 http://ftpmaster.internal/ubuntu plucky/universe Sources [20.7 MB] 413s Get:16 http://ftpmaster.internal/ubuntu plucky/main armhf Packages [1353 kB] 413s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf Packages [15.0 MB] 414s Get:18 http://ftpmaster.internal/ubuntu plucky/multiverse armhf Packages [174 kB] 417s Fetched 41.0 MB in 5s (8134 kB/s) 418s Reading package lists... 432s autopkgtest [11:00:49]: upgrading testbed (apt dist-upgrade and autopurge) 435s Reading package lists... 435s Building dependency tree... 435s Reading state information... 436s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 436s Starting 2 pkgProblemResolver with broken count: 0 436s Done 436s Entering ResolveByKeep 437s 437s The following packages will be upgraded: 437s fwupd libfwupd3 python3-software-properties software-properties-common 438s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 438s Need to get 5190 kB of archives. 438s After this operation, 4096 B disk space will be freed. 438s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf fwupd armhf 2.0.2-2 [5020 kB] 438s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libfwupd3 armhf 2.0.2-2 [124 kB] 438s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf software-properties-common all 0.107 [16.5 kB] 438s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-software-properties all 0.107 [30.4 kB] 439s Fetched 5190 kB in 1s (6644 kB/s) 439s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 439s Preparing to unpack .../fwupd_2.0.2-2_armhf.deb ... 439s Unpacking fwupd (2.0.2-2) over (2.0.2-1) ... 439s Preparing to unpack .../libfwupd3_2.0.2-2_armhf.deb ... 439s Unpacking libfwupd3:armhf (2.0.2-2) over (2.0.2-1) ... 439s Preparing to unpack .../software-properties-common_0.107_all.deb ... 439s Unpacking software-properties-common (0.107) over (0.105) ... 439s Preparing to unpack .../python3-software-properties_0.107_all.deb ... 439s Unpacking python3-software-properties (0.107) over (0.105) ... 439s Setting up libfwupd3:armhf (2.0.2-2) ... 439s Setting up python3-software-properties (0.107) ... 440s Setting up fwupd (2.0.2-2) ... 440s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 440s fwupd.service is a disabled or a static unit not running, not starting it. 440s Setting up software-properties-common (0.107) ... 440s Processing triggers for libc-bin (2.40-1ubuntu3) ... 441s Processing triggers for man-db (2.13.0-1) ... 442s Processing triggers for dbus (1.14.10-4ubuntu5) ... 445s Reading package lists... 446s Building dependency tree... 446s Reading state information... 446s Starting pkgProblemResolver with broken count: 0 446s Starting 2 pkgProblemResolver with broken count: 0 446s Done 447s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 450s autopkgtest [11:01:07]: rebooting testbed after setup commands that affected boot 560s Reading package lists... 561s Building dependency tree... 561s Reading state information... 561s Starting pkgProblemResolver with broken count: 0 561s Starting 2 pkgProblemResolver with broken count: 0 561s Done 562s The following NEW packages will be installed: 562s bitshuffle hdf5-tools libaec0 libblas3 libgfortran5 libgomp1 562s libhdf5-103-1t64 libhdf5-hl-100t64 libhdf5-mpich-103-1t64 libhwloc15 562s liblapack3 liblzf1 libmpich12 libsz2 python3-all python3-h5py 562s python3-h5py-serial python3-iniconfig python3-numpy python3-packaging 562s python3-pluggy python3-pytest 562s 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. 562s Need to get 13.8 MB of archives. 562s After this operation, 49.6 MB of additional disk space will be used. 562s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-4 [126 kB] 562s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 562s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-4 [2086 kB] 563s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11ubuntu1 [3975 kB] 563s Get:5 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 563s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 563s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 563s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 563s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B] 563s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py-serial armhf 3.11.0-8ubuntu3 [1559 kB] 563s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py all 3.11.0-8ubuntu3 [7982 B] 563s Get:12 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 563s Get:13 http://ftpmaster.internal/ubuntu plucky/universe armhf libhwloc15 armhf 2.11.2-1 [147 kB] 563s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf libmpich12 armhf 4.2.0-14 [1677 kB] 563s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-mpich-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1388 kB] 563s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf bitshuffle armhf 0.5.2-1 [177 kB] 563s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf hdf5-tools armhf 1.10.10+repack-4ubuntu3 [457 kB] 563s Get:18 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.12.6-0ubuntu1 [886 B] 563s Get:19 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 563s Get:20 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.2-1 [51.5 kB] 563s Get:21 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 563s Get:22 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB] 563s Fetched 13.8 MB in 1s (13.1 MB/s) 563s Selecting previously unselected package libblas3:armhf. 563s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59970 files and directories currently installed.) 563s Preparing to unpack .../00-libblas3_3.12.0-4_armhf.deb ... 563s Unpacking libblas3:armhf (3.12.0-4) ... 563s Selecting previously unselected package libgfortran5:armhf. 563s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 563s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 564s Selecting previously unselected package liblapack3:armhf. 564s Preparing to unpack .../02-liblapack3_3.12.0-4_armhf.deb ... 564s Unpacking liblapack3:armhf (3.12.0-4) ... 564s Selecting previously unselected package python3-numpy. 564s Preparing to unpack .../03-python3-numpy_1%3a1.26.4+ds-11ubuntu1_armhf.deb ... 564s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 564s Selecting previously unselected package libaec0:armhf. 564s Preparing to unpack .../04-libaec0_1.1.3-1_armhf.deb ... 564s Unpacking libaec0:armhf (1.1.3-1) ... 564s Selecting previously unselected package libsz2:armhf. 564s Preparing to unpack .../05-libsz2_1.1.3-1_armhf.deb ... 564s Unpacking libsz2:armhf (1.1.3-1) ... 564s Selecting previously unselected package libhdf5-103-1t64:armhf. 564s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 564s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 564s Selecting previously unselected package libhdf5-hl-100t64:armhf. 564s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 564s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 564s Selecting previously unselected package liblzf1:armhf. 564s Preparing to unpack .../08-liblzf1_3.6-4_armhf.deb ... 564s Unpacking liblzf1:armhf (3.6-4) ... 564s Selecting previously unselected package python3-h5py-serial. 564s Preparing to unpack .../09-python3-h5py-serial_3.11.0-8ubuntu3_armhf.deb ... 564s Unpacking python3-h5py-serial (3.11.0-8ubuntu3) ... 564s Selecting previously unselected package python3-h5py. 564s Preparing to unpack .../10-python3-h5py_3.11.0-8ubuntu3_all.deb ... 564s Unpacking python3-h5py (3.11.0-8ubuntu3) ... 564s Selecting previously unselected package libgomp1:armhf. 564s Preparing to unpack .../11-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 564s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 564s Selecting previously unselected package libhwloc15:armhf. 564s Preparing to unpack .../12-libhwloc15_2.11.2-1_armhf.deb ... 564s Unpacking libhwloc15:armhf (2.11.2-1) ... 564s Selecting previously unselected package libmpich12:armhf. 564s Preparing to unpack .../13-libmpich12_4.2.0-14_armhf.deb ... 564s Unpacking libmpich12:armhf (4.2.0-14) ... 564s Selecting previously unselected package libhdf5-mpich-103-1t64:armhf. 564s Preparing to unpack .../14-libhdf5-mpich-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 564s Unpacking libhdf5-mpich-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 564s Selecting previously unselected package bitshuffle. 564s Preparing to unpack .../15-bitshuffle_0.5.2-1_armhf.deb ... 564s Unpacking bitshuffle (0.5.2-1) ... 564s Selecting previously unselected package hdf5-tools. 564s Preparing to unpack .../16-hdf5-tools_1.10.10+repack-4ubuntu3_armhf.deb ... 564s Unpacking hdf5-tools (1.10.10+repack-4ubuntu3) ... 565s Selecting previously unselected package python3-all. 565s Preparing to unpack .../17-python3-all_3.12.6-0ubuntu1_armhf.deb ... 565s Unpacking python3-all (3.12.6-0ubuntu1) ... 565s Selecting previously unselected package python3-iniconfig. 565s Preparing to unpack .../18-python3-iniconfig_1.1.1-2_all.deb ... 565s Unpacking python3-iniconfig (1.1.1-2) ... 565s Selecting previously unselected package python3-packaging. 565s Preparing to unpack .../19-python3-packaging_24.2-1_all.deb ... 565s Unpacking python3-packaging (24.2-1) ... 565s Selecting previously unselected package python3-pluggy. 565s Preparing to unpack .../20-python3-pluggy_1.5.0-1_all.deb ... 565s Unpacking python3-pluggy (1.5.0-1) ... 565s Selecting previously unselected package python3-pytest. 565s Preparing to unpack .../21-python3-pytest_8.3.3-1_all.deb ... 565s Unpacking python3-pytest (8.3.3-1) ... 565s Setting up python3-iniconfig (1.1.1-2) ... 565s Setting up python3-all (3.12.6-0ubuntu1) ... 565s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 565s Setting up libaec0:armhf (1.1.3-1) ... 565s Setting up libblas3:armhf (3.12.0-4) ... 565s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 565s Setting up python3-packaging (24.2-1) ... 565s Setting up liblzf1:armhf (3.6-4) ... 565s Setting up libhwloc15:armhf (2.11.2-1) ... 565s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 565s Setting up python3-pluggy (1.5.0-1) ... 565s Setting up libmpich12:armhf (4.2.0-14) ... 565s Setting up libsz2:armhf (1.1.3-1) ... 565s Setting up liblapack3:armhf (3.12.0-4) ... 565s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 565s Setting up python3-pytest (8.3.3-1) ... 566s Setting up libhdf5-mpich-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 566s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 568s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 568s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 568s Setting up python3-h5py-serial (3.11.0-8ubuntu3) ... 568s Setting up hdf5-tools (1.10.10+repack-4ubuntu3) ... 568s Setting up python3-h5py (3.11.0-8ubuntu3) ... 568s Setting up bitshuffle (0.5.2-1) ... 568s Processing triggers for man-db (2.13.0-1) ... 569s Processing triggers for libc-bin (2.40-1ubuntu3) ... 587s autopkgtest [11:03:24]: test testsuite: [----------------------- 590s 'tests' -> '/tmp/autopkgtest.wSaQiz/autopkgtest_tmp/tests' 590s 'tests/data' -> '/tmp/autopkgtest.wSaQiz/autopkgtest_tmp/tests/data' 590s 'tests/data/regression_0.1.3.h5' -> '/tmp/autopkgtest.wSaQiz/autopkgtest_tmp/tests/data/regression_0.1.3.h5' 590s 'tests/data/regression_0.4.0.h5' -> '/tmp/autopkgtest.wSaQiz/autopkgtest_tmp/tests/data/regression_0.4.0.h5' 590s 'tests/test_h5filter.py' -> '/tmp/autopkgtest.wSaQiz/autopkgtest_tmp/tests/test_h5filter.py' 590s 'tests/test_regression.py' -> '/tmp/autopkgtest.wSaQiz/autopkgtest_tmp/tests/test_regression.py' 590s 'tests/make_regression_tdata.py' -> '/tmp/autopkgtest.wSaQiz/autopkgtest_tmp/tests/make_regression_tdata.py' 590s 'tests/test_ext.py' -> '/tmp/autopkgtest.wSaQiz/autopkgtest_tmp/tests/test_ext.py' 590s 'tests/test_h5plugin.py' -> '/tmp/autopkgtest.wSaQiz/autopkgtest_tmp/tests/test_h5plugin.py' 590s [*] testing on python3.12: 590s ============================= test session starts ============================== 590s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 590s cachedir: .pytest_cache 590s rootdir: /tmp/autopkgtest.wSaQiz/autopkgtest_tmp 590s plugins: typeguard-4.4.1 590s collecting ... collected 80 items 590s 590s tests/test_ext.py::TestProfile::test_00_copy PASSED [ 1%] 590s tests/test_ext.py::TestProfile::test_01a_trans_byte_elem_scal_16 PASSED [ 2%] 590s tests/test_ext.py::TestProfile::test_01b_trans_byte_elem_scal_32 PASSED [ 3%] 590s tests/test_ext.py::TestProfile::test_01c_trans_byte_elem_scal_64 PASSED [ 5%] 591s tests/test_ext.py::TestProfile::test_01d_trans_byte_elem_16 PASSED [ 6%] 591s tests/test_ext.py::TestProfile::test_01e_trans_byte_elem_32 PASSED [ 7%] 591s tests/test_ext.py::TestProfile::test_01f_trans_byte_elem_64 PASSED [ 8%] 591s tests/test_ext.py::TestProfile::test_01g_trans_byte_elem_128 PASSED [ 10%] 591s tests/test_ext.py::TestProfile::test_01h_trans_byte_elem_96 PASSED [ 11%] 591s tests/test_ext.py::TestProfile::test_01i_trans_byte_elem_80 PASSED [ 12%] 591s tests/test_ext.py::TestProfile::test_03a_trans_bit_byte PASSED [ 13%] 591s tests/test_ext.py::TestProfile::test_03d_trans_bit_byte_SSE PASSED [ 15%] 591s tests/test_ext.py::TestProfile::test_03f_trans_bit_byte_AVX PASSED [ 16%] 591s tests/test_ext.py::TestProfile::test_03g_trans_bit_byte_AVX512_32 PASSED [ 17%] 591s tests/test_ext.py::TestProfile::test_03g_trans_bit_byte_AVX_32 PASSED [ 18%] 591s tests/test_ext.py::TestProfile::test_03h_trans_bit_byte_AVX512 PASSED [ 20%] 591s tests/test_ext.py::TestProfile::test_04a_trans_bit_elem_AVX PASSED [ 21%] 591s tests/test_ext.py::TestProfile::test_04b_trans_bit_elem_AVX_128 PASSED [ 22%] 591s tests/test_ext.py::TestProfile::test_04c_trans_bit_elem_AVX_32 PASSED [ 23%] 591s tests/test_ext.py::TestProfile::test_04d_trans_bit_elem_AVX_16 PASSED [ 25%] 591s tests/test_ext.py::TestProfile::test_04e_trans_bit_elem_64 PASSED [ 26%] 591s tests/test_ext.py::TestProfile::test_04f_trans_bit_elem_SSE_32 PASSED [ 27%] 591s tests/test_ext.py::TestProfile::test_04g_trans_bit_elem_SSE_64 PASSED [ 28%] 591s tests/test_ext.py::TestProfile::test_04h_trans_bit_elem_AVX512 PASSED [ 30%] 591s tests/test_ext.py::TestProfile::test_04i_trans_bit_elem_AVX512 PASSED [ 31%] 591s tests/test_ext.py::TestProfile::test_04j_trans_bit_elem_AVX512_32 PASSED [ 32%] 591s tests/test_ext.py::TestProfile::test_04k_trans_bit_elem_AVX512_16 PASSED [ 33%] 591s tests/test_ext.py::TestProfile::test_06a_untrans_bit_elem_16 PASSED [ 35%] 591s tests/test_ext.py::TestProfile::test_06b_untrans_bit_elem_128 PASSED [ 36%] 591s tests/test_ext.py::TestProfile::test_06c_untrans_bit_elem_32 PASSED [ 37%] 591s tests/test_ext.py::TestProfile::test_06d_untrans_bit_elem_32 PASSED [ 38%] 591s tests/test_ext.py::TestProfile::test_06e_untrans_bit_elem_64 PASSED [ 40%] 591s tests/test_ext.py::TestProfile::test_06f_untrans_bit_elem_64 PASSED [ 41%] 591s tests/test_ext.py::TestProfile::test_06g_untrans_bit_elem_64 PASSED [ 42%] 591s tests/test_ext.py::TestProfile::test_06h_untrans_bit_elem_32 PASSED [ 43%] 591s tests/test_ext.py::TestProfile::test_06i_untrans_bit_elem_64 PASSED [ 45%] 591s tests/test_ext.py::TestProfile::test_07a_trans_byte_bitrow_64 PASSED [ 46%] 591s tests/test_ext.py::TestProfile::test_07b_trans_byte_bitrow_SSE_64 PASSED [ 47%] 591s tests/test_ext.py::TestProfile::test_07c_trans_byte_bitrow_AVX_64 PASSED [ 48%] 591s tests/test_ext.py::TestProfile::test_08a_shuffle_bit_eight_scal_64 PASSED [ 50%] 591s tests/test_ext.py::TestProfile::test_08b_shuffle_bit_eight_SSE_64 PASSED [ 51%] 591s tests/test_ext.py::TestProfile::test_08c_shuffle_bit_eight_AVX_32 PASSED [ 52%] 591s tests/test_ext.py::TestProfile::test_08d_shuffle_bit_eight_AVX_64 PASSED [ 53%] 591s tests/test_ext.py::TestProfile::test_08e_shuffle_bit_eight_AVX_16 PASSED [ 55%] 591s tests/test_ext.py::TestProfile::test_08f_shuffle_bit_eight_AVX_128 PASSED [ 56%] 591s tests/test_ext.py::TestProfile::test_08g_shuffle_bit_eight_AVX512_32 PASSED [ 57%] 591s tests/test_ext.py::TestProfile::test_08h_shuffle_bit_eight_AVX512_64 PASSED [ 58%] 591s tests/test_ext.py::TestProfile::test_08i_shuffle_bit_eight_AVX512_128 PASSED [ 60%] 591s tests/test_ext.py::TestProfile::test_08i_shuffle_bit_eight_AVX512_16 PASSED [ 61%] 591s tests/test_ext.py::TestProfile::test_09a_trans_bit_elem_scal_64 PASSED [ 62%] 591s tests/test_ext.py::TestProfile::test_09b_trans_bit_elem_SSE_64 PASSED [ 63%] 591s tests/test_ext.py::TestProfile::test_09c_trans_bit_elem_AVX_64 PASSED [ 65%] 591s tests/test_ext.py::TestProfile::test_09d_untrans_bit_elem_scal_64 PASSED [ 66%] 591s tests/test_ext.py::TestProfile::test_09e_untrans_bit_elem_SSE_64 PASSED [ 67%] 591s tests/test_ext.py::TestProfile::test_09f_untrans_bit_elem_AVX_64 PASSED [ 68%] 591s tests/test_ext.py::TestProfile::test_09g_untrans_bit_elem_AVX_64 PASSED [ 70%] 591s tests/test_ext.py::TestProfile::test_10a_bitshuffle_64 PASSED [ 71%] 591s tests/test_ext.py::TestProfile::test_10b_bitunshuffle_64 PASSED [ 72%] 591s tests/test_ext.py::TestProfile::test_10c_compress_64 PASSED [ 73%] 591s tests/test_ext.py::TestProfile::test_10c_compress_z64 PASSED [ 75%] 591s tests/test_ext.py::TestProfile::test_10d_decompress_64 PASSED [ 76%] 591s tests/test_ext.py::TestProfile::test_10d_decompress_z64 PASSED [ 77%] 591s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_AVX PASSED [ 78%] 591s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_AVX512 PASSED [ 80%] 591s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_SSE PASSED [ 81%] 591s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_scal PASSED [ 82%] 591s tests/test_ext.py::TestOddLengths::test_trans_byte_elem_SSE PASSED [ 83%] 591s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_AVX PASSED [ 85%] 591s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_AVX512 PASSED [ 86%] 591s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_SSE PASSED [ 87%] 591s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_scal PASSED [ 88%] 592s tests/test_ext.py::TestBitShuffleCircle::test_circle PASSED [ 90%] 593s tests/test_ext.py::TestBitShuffleCircle::test_circle_with_compression PASSED [ 91%] 594s tests/test_ext.py::TestBitShuffleCircle::test_circle_with_zstd_compression PASSED [ 92%] 594s tests/test_h5filter.py::TestFilter::test_filter PASSED [ 93%] 594s tests/test_h5filter.py::TestFilter::test_with_block_size PASSED [ 95%] 594s tests/test_h5filter.py::TestFilter::test_with_lz4_compression PASSED [ 96%] 594s tests/test_h5filter.py::TestFilter::test_with_zstd_compression PASSED [ 97%] 594s tests/test_h5plugin.py::TestFilterPlugins::test_plugins PASSED [ 98%] 594s tests/test_regression.py::TestAll::test_regression PASSED [100%] 594s 594s ============================== 80 passed in 3.72s ============================== 594s autopkgtest [11:03:31]: test testsuite: -----------------------] 602s testsuite PASS 602s autopkgtest [11:03:39]: test testsuite: - - - - - - - - - - results - - - - - - - - - - 608s autopkgtest [11:03:45]: @@@@@@@@@@@@@@@@@@@@ summary 608s command1 PASS 608s command2 PASS 608s testsuite PASS