1s autopkgtest [16:33:16]: starting date and time: 2024-11-18 16:33:16+0000 1s autopkgtest [16:33:16]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 1s autopkgtest [16:33:16]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fe6xzx7s/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:h5py,src:sphinx-rtd-theme --apt-upgrade bitshuffle --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu1 sphinx-rtd-theme/3.0.2+dfsg-1' -- lxd -r lxd-armhf-10.145.243.247 lxd-armhf-10.145.243.247:autopkgtest/ubuntu/plucky/armhf 62s autopkgtest [16:34:17]: testbed dpkg architecture: armhf 65s autopkgtest [16:34:20]: testbed apt version: 2.9.8 65s autopkgtest [16:34:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 74s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 74s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 74s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [814 kB] 74s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [71.7 kB] 74s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 74s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [79.6 kB] 74s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [584 kB] 75s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3240 B] 75s Fetched 1647 kB in 1s (1390 kB/s) 75s Reading package lists... 94s tee: /proc/self/fd/2: Permission denied 148s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 148s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 148s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 148s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 150s Reading package lists... 150s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s Calculating upgrade... 153s The following NEW packages will be installed: 153s liblsof0 153s The following packages will be upgraded: 153s lsof 153s 1 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 153s Need to get 300 kB of archives. 153s After this operation, 171 kB of additional disk space will be used. 153s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf liblsof0 armhf 4.99.3+dfsg-2 [60.5 kB] 153s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf lsof armhf 4.99.3+dfsg-2 [239 kB] 154s Fetched 300 kB in 1s (478 kB/s) 154s Selecting previously unselected package liblsof0. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59581 files and directories currently installed.) 154s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_armhf.deb ... 154s Unpacking liblsof0 (4.99.3+dfsg-2) ... 154s Preparing to unpack .../lsof_4.99.3+dfsg-2_armhf.deb ... 154s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ... 154s Setting up liblsof0 (4.99.3+dfsg-2) ... 154s Setting up lsof (4.99.3+dfsg-2) ... 154s Processing triggers for man-db (2.13.0-1) ... 155s Processing triggers for libc-bin (2.40-1ubuntu3) ... 155s Reading package lists... 156s Building dependency tree... 156s Reading state information... 157s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s autopkgtest [16:35:54]: rebooting testbed after setup commands that affected boot 232s autopkgtest [16:37:07]: testbed running kernel: Linux 6.8.0-48-generic #48~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Mon Oct 7 11:49:53 UTC 2 263s autopkgtest [16:37:38]: @@@@@@@@@@@@@@@@@@@@ apt-source bitshuffle 273s Get:1 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.1-2 (dsc) [2643 B] 273s Get:2 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.1-2 (tar) [190 kB] 273s Get:3 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.1-2 (diff) [8104 B] 273s gpgv: Signature made Sun Sep 22 08:35:17 2024 UTC 273s gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB 273s gpgv: issuer "picca@debian.org" 273s gpgv: Can't check signature: No public key 273s dpkg-source: warning: cannot verify inline signature for ./bitshuffle_0.5.1-2.dsc: no acceptable signature found 273s autopkgtest [16:37:48]: testing package bitshuffle version 0.5.1-2 275s autopkgtest [16:37:50]: build not needed 278s autopkgtest [16:37:53]: test command1: preparing testbed 288s Reading package lists... 288s Building dependency tree... 288s Reading state information... 289s Starting pkgProblemResolver with broken count: 0 289s Starting 2 pkgProblemResolver with broken count: 0 289s Done 291s The following additional packages will be installed: 291s bitshuffle libaec0 libblas3 libgfortran5 libgomp1 libhdf5-103-1t64 291s libhdf5-hl-100t64 libhdf5-mpich-103-1t64 libhwloc15 liblapack3 liblzf1 291s libmpich12 libsz2 python3-h5py python3-h5py-serial python3-numpy 291s Suggested packages: 291s python-h5py-doc gcc gfortran python-numpy-doc python3-dev python3-pytest 291s Recommended packages: 291s libhwloc-plugins 291s The following NEW packages will be installed: 291s autopkgtest-satdep bitshuffle libaec0 libblas3 libgfortran5 libgomp1 291s libhdf5-103-1t64 libhdf5-hl-100t64 libhdf5-mpich-103-1t64 libhwloc15 291s liblapack3 liblzf1 libmpich12 libsz2 python3-h5py python3-h5py-serial 291s python3-numpy 291s 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. 291s Need to get 12.9 MB/12.9 MB of archives. 291s After this operation, 45.5 MB of additional disk space will be used. 291s Get:1 /tmp/autopkgtest.P9pAio/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [712 B] 291s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 291s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 291s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 292s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11ubuntu1 [3975 kB] 293s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 293s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 293s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 293s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 293s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B] 293s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py-serial armhf 3.11.0-8ubuntu1 [1474 kB] 293s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py all 3.11.0-8ubuntu1 [7982 B] 293s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 293s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf libhwloc15 armhf 2.11.2-1 [147 kB] 293s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf libmpich12 armhf 4.2.0-14 [1677 kB] 293s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-mpich-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1388 kB] 293s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf bitshuffle armhf 0.5.1-2 [127 kB] 294s Fetched 12.9 MB in 2s (5477 kB/s) 294s Selecting previously unselected package libblas3:armhf. 294s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59586 files and directories currently installed.) 294s Preparing to unpack .../00-libblas3_3.12.0-3build2_armhf.deb ... 294s Unpacking libblas3:armhf (3.12.0-3build2) ... 294s Selecting previously unselected package libgfortran5:armhf. 294s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 294s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 294s Selecting previously unselected package liblapack3:armhf. 294s Preparing to unpack .../02-liblapack3_3.12.0-3build2_armhf.deb ... 294s Unpacking liblapack3:armhf (3.12.0-3build2) ... 294s Selecting previously unselected package python3-numpy. 294s Preparing to unpack .../03-python3-numpy_1%3a1.26.4+ds-11ubuntu1_armhf.deb ... 294s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 294s Selecting previously unselected package libaec0:armhf. 294s Preparing to unpack .../04-libaec0_1.1.3-1_armhf.deb ... 294s Unpacking libaec0:armhf (1.1.3-1) ... 295s Selecting previously unselected package libsz2:armhf. 295s Preparing to unpack .../05-libsz2_1.1.3-1_armhf.deb ... 295s Unpacking libsz2:armhf (1.1.3-1) ... 295s Selecting previously unselected package libhdf5-103-1t64:armhf. 295s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 295s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 295s Selecting previously unselected package libhdf5-hl-100t64:armhf. 295s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 295s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 295s Selecting previously unselected package liblzf1:armhf. 295s Preparing to unpack .../08-liblzf1_3.6-4_armhf.deb ... 295s Unpacking liblzf1:armhf (3.6-4) ... 295s Selecting previously unselected package python3-h5py-serial. 295s Preparing to unpack .../09-python3-h5py-serial_3.11.0-8ubuntu1_armhf.deb ... 295s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 295s Selecting previously unselected package python3-h5py. 295s Preparing to unpack .../10-python3-h5py_3.11.0-8ubuntu1_all.deb ... 295s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 295s Selecting previously unselected package libgomp1:armhf. 295s Preparing to unpack .../11-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 295s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 295s Selecting previously unselected package libhwloc15:armhf. 295s Preparing to unpack .../12-libhwloc15_2.11.2-1_armhf.deb ... 295s Unpacking libhwloc15:armhf (2.11.2-1) ... 295s Selecting previously unselected package libmpich12:armhf. 295s Preparing to unpack .../13-libmpich12_4.2.0-14_armhf.deb ... 295s Unpacking libmpich12:armhf (4.2.0-14) ... 295s Selecting previously unselected package libhdf5-mpich-103-1t64:armhf. 295s Preparing to unpack .../14-libhdf5-mpich-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 295s Unpacking libhdf5-mpich-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 295s Selecting previously unselected package bitshuffle. 295s Preparing to unpack .../15-bitshuffle_0.5.1-2_armhf.deb ... 295s Unpacking bitshuffle (0.5.1-2) ... 295s Selecting previously unselected package autopkgtest-satdep. 295s Preparing to unpack .../16-1-autopkgtest-satdep.deb ... 295s Unpacking autopkgtest-satdep (0) ... 295s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 295s Setting up libaec0:armhf (1.1.3-1) ... 295s Setting up libblas3:armhf (3.12.0-3build2) ... 295s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 295s Setting up liblzf1:armhf (3.6-4) ... 295s Setting up libhwloc15:armhf (2.11.2-1) ... 295s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 295s Setting up libmpich12:armhf (4.2.0-14) ... 295s Setting up libsz2:armhf (1.1.3-1) ... 295s Setting up liblapack3:armhf (3.12.0-3build2) ... 295s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 295s Setting up libhdf5-mpich-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 295s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 298s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 298s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 298s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 299s Setting up python3-h5py (3.11.0-8ubuntu1) ... 299s Setting up bitshuffle (0.5.1-2) ... 299s Setting up autopkgtest-satdep (0) ... 299s Processing triggers for man-db (2.13.0-1) ... 300s Processing triggers for libc-bin (2.40-1ubuntu3) ... 313s (Reading database ... 60725 files and directories currently installed.) 313s Removing autopkgtest-satdep (0) ... 319s autopkgtest [16:38:34]: test command1: python3 -c 'import sys, h5py; sys.exit(not h5py.h5z.filter_avail(32008))' 319s autopkgtest [16:38:34]: test command1: [----------------------- 322s autopkgtest [16:38:37]: test command1: -----------------------] 325s command1 PASS 325s autopkgtest [16:38:40]: test command1: - - - - - - - - - - results - - - - - - - - - - 329s autopkgtest [16:38:44]: test command2: preparing testbed 343s Reading package lists... 344s Building dependency tree... 344s Reading state information... 345s Starting pkgProblemResolver with broken count: 0 345s Starting 2 pkgProblemResolver with broken count: 0 345s Done 346s The following NEW packages will be installed: 346s autopkgtest-satdep 346s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 346s Need to get 0 B/712 B of archives. 346s After this operation, 0 B of additional disk space will be used. 346s Get:1 /tmp/autopkgtest.P9pAio/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [712 B] 347s Selecting previously unselected package autopkgtest-satdep. 347s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 60725 files and directories currently installed.) 347s Preparing to unpack .../2-autopkgtest-satdep.deb ... 347s Unpacking autopkgtest-satdep (0) ... 347s Setting up autopkgtest-satdep (0) ... 358s (Reading database ... 60725 files and directories currently installed.) 358s Removing autopkgtest-satdep (0) ... 364s autopkgtest [16:39:19]: test command2: H5PY_ALWAYS_USE_MPI=1 python3 -c 'import sys, h5py; sys.exit(not h5py.h5z.filter_avail(32008))' 364s autopkgtest [16:39:19]: test command2: [----------------------- 366s autopkgtest [16:39:21]: test command2: -----------------------] 370s command2 PASS 370s autopkgtest [16:39:25]: test command2: - - - - - - - - - - results - - - - - - - - - - 374s autopkgtest [16:39:29]: test testsuite: preparing testbed 428s autopkgtest [16:40:23]: testbed dpkg architecture: armhf 430s autopkgtest [16:40:25]: testbed apt version: 2.9.8 430s autopkgtest [16:40:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 438s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 438s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 438s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [71.7 kB] 438s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 438s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [814 kB] 438s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main armhf Packages [79.6 kB] 438s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf Packages [584 kB] 438s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse armhf Packages [3240 B] 439s Fetched 1647 kB in 1s (1676 kB/s) 439s Reading package lists... 453s tee: /proc/self/fd/2: Permission denied 476s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 476s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 476s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 476s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 477s Reading package lists... 478s Reading package lists... 478s Building dependency tree... 478s Reading state information... 479s Calculating upgrade... 480s The following NEW packages will be installed: 480s liblsof0 480s The following packages will be upgraded: 480s lsof 480s 1 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 480s Need to get 300 kB of archives. 480s After this operation, 171 kB of additional disk space will be used. 480s Get:1 http://ftpmaster.internal/ubuntu plucky/main armhf liblsof0 armhf 4.99.3+dfsg-2 [60.5 kB] 480s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf lsof armhf 4.99.3+dfsg-2 [239 kB] 481s Fetched 300 kB in 0s (614 kB/s) 481s Selecting previously unselected package liblsof0. 481s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59581 files and directories currently installed.) 481s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_armhf.deb ... 481s Unpacking liblsof0 (4.99.3+dfsg-2) ... 481s Preparing to unpack .../lsof_4.99.3+dfsg-2_armhf.deb ... 481s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ... 481s Setting up liblsof0 (4.99.3+dfsg-2) ... 481s Setting up lsof (4.99.3+dfsg-2) ... 481s Processing triggers for man-db (2.13.0-1) ... 482s Processing triggers for libc-bin (2.40-1ubuntu3) ... 483s Reading package lists... 483s Building dependency tree... 483s Reading state information... 484s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 486s autopkgtest [16:41:21]: rebooting testbed after setup commands that affected boot 586s Reading package lists... 587s Building dependency tree... 587s Reading state information... 588s Starting pkgProblemResolver with broken count: 0 588s Starting 2 pkgProblemResolver with broken count: 0 588s Done 590s The following additional packages will be installed: 590s bitshuffle hdf5-tools libaec0 libblas3 libgfortran5 libgomp1 590s libhdf5-103-1t64 libhdf5-hl-100t64 libhdf5-mpich-103-1t64 libhwloc15 590s liblapack3 liblzf1 libmpich12 libsz2 python3-all python3-h5py 590s python3-h5py-serial python3-iniconfig python3-numpy python3-packaging 590s python3-pluggy python3-pytest 590s Suggested packages: 590s python-h5py-doc gcc gfortran python-numpy-doc python3-dev 590s Recommended packages: 590s libhwloc-plugins 590s The following NEW packages will be installed: 590s autopkgtest-satdep bitshuffle hdf5-tools libaec0 libblas3 libgfortran5 590s libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhdf5-mpich-103-1t64 590s libhwloc15 liblapack3 liblzf1 libmpich12 libsz2 python3-all python3-h5py 590s python3-h5py-serial python3-iniconfig python3-numpy python3-packaging 590s python3-pluggy python3-pytest 590s 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. 590s Need to get 13.6 MB/13.6 MB of archives. 590s After this operation, 49.2 MB of additional disk space will be used. 590s Get:1 /tmp/autopkgtest.P9pAio/3-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [732 B] 590s Get:2 http://ftpmaster.internal/ubuntu plucky/main armhf libblas3 armhf 3.12.0-3build2 [126 kB] 590s Get:3 http://ftpmaster.internal/ubuntu plucky/main armhf libgfortran5 armhf 14.2.0-8ubuntu1 [311 kB] 591s Get:4 http://ftpmaster.internal/ubuntu plucky/main armhf liblapack3 armhf 3.12.0-3build2 [2086 kB] 591s Get:5 http://ftpmaster.internal/ubuntu plucky/main armhf python3-numpy armhf 1:1.26.4+ds-11ubuntu1 [3975 kB] 591s Get:6 http://ftpmaster.internal/ubuntu plucky/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB] 591s Get:7 http://ftpmaster.internal/ubuntu plucky/universe armhf libsz2 armhf 1.1.3-1 [5302 B] 591s Get:8 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1327 kB] 591s Get:9 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4ubuntu3 [55.9 kB] 591s Get:10 http://ftpmaster.internal/ubuntu plucky/universe armhf liblzf1 armhf 3.6-4 [6554 B] 591s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py-serial armhf 3.11.0-8ubuntu1 [1474 kB] 591s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe armhf python3-h5py all 3.11.0-8ubuntu1 [7982 B] 591s Get:13 http://ftpmaster.internal/ubuntu plucky/main armhf libgomp1 armhf 14.2.0-8ubuntu1 [125 kB] 591s Get:14 http://ftpmaster.internal/ubuntu plucky/universe armhf libhwloc15 armhf 2.11.2-1 [147 kB] 591s Get:15 http://ftpmaster.internal/ubuntu plucky/universe armhf libmpich12 armhf 4.2.0-14 [1677 kB] 591s Get:16 http://ftpmaster.internal/ubuntu plucky/universe armhf libhdf5-mpich-103-1t64 armhf 1.10.10+repack-4ubuntu3 [1388 kB] 591s Get:17 http://ftpmaster.internal/ubuntu plucky/universe armhf bitshuffle armhf 0.5.1-2 [127 kB] 591s Get:18 http://ftpmaster.internal/ubuntu plucky/universe armhf hdf5-tools armhf 1.10.10+repack-4ubuntu3 [457 kB] 591s Get:19 http://ftpmaster.internal/ubuntu plucky/main armhf python3-all armhf 3.12.6-0ubuntu1 [886 B] 591s Get:20 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 591s Get:21 http://ftpmaster.internal/ubuntu plucky/main armhf python3-packaging all 24.2-1 [51.5 kB] 591s Get:22 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 591s Get:23 http://ftpmaster.internal/ubuntu plucky/universe armhf python3-pytest all 8.3.3-1 [251 kB] 592s Fetched 13.6 MB in 1s (13.1 MB/s) 592s Selecting previously unselected package libblas3:armhf. 592s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59586 files and directories currently installed.) 592s Preparing to unpack .../00-libblas3_3.12.0-3build2_armhf.deb ... 592s Unpacking libblas3:armhf (3.12.0-3build2) ... 592s Selecting previously unselected package libgfortran5:armhf. 592s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_armhf.deb ... 592s Unpacking libgfortran5:armhf (14.2.0-8ubuntu1) ... 592s Selecting previously unselected package liblapack3:armhf. 592s Preparing to unpack .../02-liblapack3_3.12.0-3build2_armhf.deb ... 592s Unpacking liblapack3:armhf (3.12.0-3build2) ... 592s Selecting previously unselected package python3-numpy. 592s Preparing to unpack .../03-python3-numpy_1%3a1.26.4+ds-11ubuntu1_armhf.deb ... 592s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 592s Selecting previously unselected package libaec0:armhf. 592s Preparing to unpack .../04-libaec0_1.1.3-1_armhf.deb ... 592s Unpacking libaec0:armhf (1.1.3-1) ... 592s Selecting previously unselected package libsz2:armhf. 592s Preparing to unpack .../05-libsz2_1.1.3-1_armhf.deb ... 592s Unpacking libsz2:armhf (1.1.3-1) ... 592s Selecting previously unselected package libhdf5-103-1t64:armhf. 592s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 592s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 593s Selecting previously unselected package libhdf5-hl-100t64:armhf. 593s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_armhf.deb ... 593s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 593s Selecting previously unselected package liblzf1:armhf. 593s Preparing to unpack .../08-liblzf1_3.6-4_armhf.deb ... 593s Unpacking liblzf1:armhf (3.6-4) ... 593s Selecting previously unselected package python3-h5py-serial. 593s Preparing to unpack .../09-python3-h5py-serial_3.11.0-8ubuntu1_armhf.deb ... 593s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 593s Selecting previously unselected package python3-h5py. 593s Preparing to unpack .../10-python3-h5py_3.11.0-8ubuntu1_all.deb ... 593s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 593s Selecting previously unselected package libgomp1:armhf. 593s Preparing to unpack .../11-libgomp1_14.2.0-8ubuntu1_armhf.deb ... 593s Unpacking libgomp1:armhf (14.2.0-8ubuntu1) ... 593s Selecting previously unselected package libhwloc15:armhf. 593s Preparing to unpack .../12-libhwloc15_2.11.2-1_armhf.deb ... 593s Unpacking libhwloc15:armhf (2.11.2-1) ... 593s Selecting previously unselected package libmpich12:armhf. 593s Preparing to unpack .../13-libmpich12_4.2.0-14_armhf.deb ... 593s Unpacking libmpich12:armhf (4.2.0-14) ... 593s Selecting previously unselected package libhdf5-mpich-103-1t64:armhf. 593s Preparing to unpack .../14-libhdf5-mpich-103-1t64_1.10.10+repack-4ubuntu3_armhf.deb ... 593s Unpacking libhdf5-mpich-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 593s Selecting previously unselected package bitshuffle. 593s Preparing to unpack .../15-bitshuffle_0.5.1-2_armhf.deb ... 593s Unpacking bitshuffle (0.5.1-2) ... 593s Selecting previously unselected package hdf5-tools. 593s Preparing to unpack .../16-hdf5-tools_1.10.10+repack-4ubuntu3_armhf.deb ... 593s Unpacking hdf5-tools (1.10.10+repack-4ubuntu3) ... 593s Selecting previously unselected package python3-all. 593s Preparing to unpack .../17-python3-all_3.12.6-0ubuntu1_armhf.deb ... 593s Unpacking python3-all (3.12.6-0ubuntu1) ... 593s Selecting previously unselected package python3-iniconfig. 593s Preparing to unpack .../18-python3-iniconfig_1.1.1-2_all.deb ... 593s Unpacking python3-iniconfig (1.1.1-2) ... 593s Selecting previously unselected package python3-packaging. 593s Preparing to unpack .../19-python3-packaging_24.2-1_all.deb ... 593s Unpacking python3-packaging (24.2-1) ... 593s Selecting previously unselected package python3-pluggy. 594s Preparing to unpack .../20-python3-pluggy_1.5.0-1_all.deb ... 594s Unpacking python3-pluggy (1.5.0-1) ... 594s Selecting previously unselected package python3-pytest. 594s Preparing to unpack .../21-python3-pytest_8.3.3-1_all.deb ... 594s Unpacking python3-pytest (8.3.3-1) ... 594s Selecting previously unselected package autopkgtest-satdep. 594s Preparing to unpack .../22-3-autopkgtest-satdep.deb ... 594s Unpacking autopkgtest-satdep (0) ... 594s Setting up python3-iniconfig (1.1.1-2) ... 594s Setting up python3-all (3.12.6-0ubuntu1) ... 594s Setting up libgomp1:armhf (14.2.0-8ubuntu1) ... 594s Setting up libaec0:armhf (1.1.3-1) ... 594s Setting up libblas3:armhf (3.12.0-3build2) ... 594s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 594s Setting up python3-packaging (24.2-1) ... 594s Setting up liblzf1:armhf (3.6-4) ... 594s Setting up libhwloc15:armhf (2.11.2-1) ... 594s Setting up libgfortran5:armhf (14.2.0-8ubuntu1) ... 594s Setting up python3-pluggy (1.5.0-1) ... 594s Setting up libmpich12:armhf (4.2.0-14) ... 594s Setting up libsz2:armhf (1.1.3-1) ... 594s Setting up liblapack3:armhf (3.12.0-3build2) ... 594s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 594s Setting up python3-pytest (8.3.3-1) ... 595s Setting up libhdf5-mpich-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 595s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 598s Setting up libhdf5-103-1t64:armhf (1.10.10+repack-4ubuntu3) ... 598s Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-4ubuntu3) ... 598s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 598s Setting up hdf5-tools (1.10.10+repack-4ubuntu3) ... 598s Setting up python3-h5py (3.11.0-8ubuntu1) ... 599s Setting up bitshuffle (0.5.1-2) ... 599s Setting up autopkgtest-satdep (0) ... 599s Processing triggers for man-db (2.13.0-1) ... 599s Processing triggers for libc-bin (2.40-1ubuntu3) ... 615s (Reading database ... 60929 files and directories currently installed.) 615s Removing autopkgtest-satdep (0) ... 626s autopkgtest [16:43:41]: test testsuite: [----------------------- 628s 'tests' -> '/tmp/autopkgtest.P9pAio/autopkgtest_tmp/tests' 628s 'tests/data' -> '/tmp/autopkgtest.P9pAio/autopkgtest_tmp/tests/data' 628s 'tests/data/regression_0.1.3.h5' -> '/tmp/autopkgtest.P9pAio/autopkgtest_tmp/tests/data/regression_0.1.3.h5' 628s 'tests/data/regression_0.4.0.h5' -> '/tmp/autopkgtest.P9pAio/autopkgtest_tmp/tests/data/regression_0.4.0.h5' 628s 'tests/test_h5filter.py' -> '/tmp/autopkgtest.P9pAio/autopkgtest_tmp/tests/test_h5filter.py' 628s 'tests/test_regression.py' -> '/tmp/autopkgtest.P9pAio/autopkgtest_tmp/tests/test_regression.py' 628s 'tests/make_regression_tdata.py' -> '/tmp/autopkgtest.P9pAio/autopkgtest_tmp/tests/make_regression_tdata.py' 628s 'tests/test_ext.py' -> '/tmp/autopkgtest.P9pAio/autopkgtest_tmp/tests/test_ext.py' 628s 'tests/test_h5plugin.py' -> '/tmp/autopkgtest.P9pAio/autopkgtest_tmp/tests/test_h5plugin.py' 628s [*] testing on python3.12: 628s ============================= test session starts ============================== 628s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 628s cachedir: .pytest_cache 628s rootdir: /tmp/autopkgtest.P9pAio/autopkgtest_tmp 628s plugins: typeguard-4.4.1 629s collecting ... collected 80 items 629s 629s tests/test_ext.py::TestProfile::test_00_copy PASSED [ 1%] 629s tests/test_ext.py::TestProfile::test_01a_trans_byte_elem_scal_16 PASSED [ 2%] 629s tests/test_ext.py::TestProfile::test_01b_trans_byte_elem_scal_32 PASSED [ 3%] 629s tests/test_ext.py::TestProfile::test_01c_trans_byte_elem_scal_64 PASSED [ 5%] 629s tests/test_ext.py::TestProfile::test_01d_trans_byte_elem_16 PASSED [ 6%] 629s tests/test_ext.py::TestProfile::test_01e_trans_byte_elem_32 PASSED [ 7%] 629s tests/test_ext.py::TestProfile::test_01f_trans_byte_elem_64 PASSED [ 8%] 629s tests/test_ext.py::TestProfile::test_01g_trans_byte_elem_128 PASSED [ 10%] 629s tests/test_ext.py::TestProfile::test_01h_trans_byte_elem_96 PASSED [ 11%] 629s tests/test_ext.py::TestProfile::test_01i_trans_byte_elem_80 PASSED [ 12%] 629s tests/test_ext.py::TestProfile::test_03a_trans_bit_byte PASSED [ 13%] 629s tests/test_ext.py::TestProfile::test_03d_trans_bit_byte_SSE PASSED [ 15%] 629s tests/test_ext.py::TestProfile::test_03f_trans_bit_byte_AVX PASSED [ 16%] 629s tests/test_ext.py::TestProfile::test_03g_trans_bit_byte_AVX512_32 PASSED [ 17%] 629s tests/test_ext.py::TestProfile::test_03g_trans_bit_byte_AVX_32 PASSED [ 18%] 629s tests/test_ext.py::TestProfile::test_03h_trans_bit_byte_AVX512 PASSED [ 20%] 629s tests/test_ext.py::TestProfile::test_04a_trans_bit_elem_AVX PASSED [ 21%] 629s tests/test_ext.py::TestProfile::test_04b_trans_bit_elem_AVX_128 PASSED [ 22%] 629s tests/test_ext.py::TestProfile::test_04c_trans_bit_elem_AVX_32 PASSED [ 23%] 629s tests/test_ext.py::TestProfile::test_04d_trans_bit_elem_AVX_16 PASSED [ 25%] 629s tests/test_ext.py::TestProfile::test_04e_trans_bit_elem_64 PASSED [ 26%] 629s tests/test_ext.py::TestProfile::test_04f_trans_bit_elem_SSE_32 PASSED [ 27%] 629s tests/test_ext.py::TestProfile::test_04g_trans_bit_elem_SSE_64 PASSED [ 28%] 629s tests/test_ext.py::TestProfile::test_04h_trans_bit_elem_AVX512 PASSED [ 30%] 629s tests/test_ext.py::TestProfile::test_04i_trans_bit_elem_AVX512 PASSED [ 31%] 629s tests/test_ext.py::TestProfile::test_04j_trans_bit_elem_AVX512_32 PASSED [ 32%] 629s tests/test_ext.py::TestProfile::test_04k_trans_bit_elem_AVX512_16 PASSED [ 33%] 629s tests/test_ext.py::TestProfile::test_06a_untrans_bit_elem_16 PASSED [ 35%] 629s tests/test_ext.py::TestProfile::test_06b_untrans_bit_elem_128 PASSED [ 36%] 629s tests/test_ext.py::TestProfile::test_06c_untrans_bit_elem_32 PASSED [ 37%] 629s tests/test_ext.py::TestProfile::test_06d_untrans_bit_elem_32 PASSED [ 38%] 629s tests/test_ext.py::TestProfile::test_06e_untrans_bit_elem_64 PASSED [ 40%] 629s tests/test_ext.py::TestProfile::test_06f_untrans_bit_elem_64 PASSED [ 41%] 629s tests/test_ext.py::TestProfile::test_06g_untrans_bit_elem_64 PASSED [ 42%] 629s tests/test_ext.py::TestProfile::test_06h_untrans_bit_elem_32 PASSED [ 43%] 629s tests/test_ext.py::TestProfile::test_06i_untrans_bit_elem_64 PASSED [ 45%] 629s tests/test_ext.py::TestProfile::test_07a_trans_byte_bitrow_64 PASSED [ 46%] 629s tests/test_ext.py::TestProfile::test_07b_trans_byte_bitrow_SSE_64 PASSED [ 47%] 629s tests/test_ext.py::TestProfile::test_07c_trans_byte_bitrow_AVX_64 PASSED [ 48%] 629s tests/test_ext.py::TestProfile::test_08a_shuffle_bit_eight_scal_64 PASSED [ 50%] 629s tests/test_ext.py::TestProfile::test_08b_shuffle_bit_eight_SSE_64 PASSED [ 51%] 629s tests/test_ext.py::TestProfile::test_08c_shuffle_bit_eight_AVX_32 PASSED [ 52%] 629s tests/test_ext.py::TestProfile::test_08d_shuffle_bit_eight_AVX_64 PASSED [ 53%] 629s tests/test_ext.py::TestProfile::test_08e_shuffle_bit_eight_AVX_16 PASSED [ 55%] 629s tests/test_ext.py::TestProfile::test_08f_shuffle_bit_eight_AVX_128 PASSED [ 56%] 629s tests/test_ext.py::TestProfile::test_08g_shuffle_bit_eight_AVX512_32 PASSED [ 57%] 629s tests/test_ext.py::TestProfile::test_08h_shuffle_bit_eight_AVX512_64 PASSED [ 58%] 629s tests/test_ext.py::TestProfile::test_08i_shuffle_bit_eight_AVX512_128 PASSED [ 60%] 629s tests/test_ext.py::TestProfile::test_08i_shuffle_bit_eight_AVX512_16 PASSED [ 61%] 629s tests/test_ext.py::TestProfile::test_09a_trans_bit_elem_scal_64 PASSED [ 62%] 629s tests/test_ext.py::TestProfile::test_09b_trans_bit_elem_SSE_64 PASSED [ 63%] 629s tests/test_ext.py::TestProfile::test_09c_trans_bit_elem_AVX_64 PASSED [ 65%] 629s tests/test_ext.py::TestProfile::test_09d_untrans_bit_elem_scal_64 PASSED [ 66%] 629s tests/test_ext.py::TestProfile::test_09e_untrans_bit_elem_SSE_64 PASSED [ 67%] 629s tests/test_ext.py::TestProfile::test_09f_untrans_bit_elem_AVX_64 PASSED [ 68%] 629s tests/test_ext.py::TestProfile::test_09g_untrans_bit_elem_AVX_64 PASSED [ 70%] 629s tests/test_ext.py::TestProfile::test_10a_bitshuffle_64 PASSED [ 71%] 629s tests/test_ext.py::TestProfile::test_10b_bitunshuffle_64 PASSED [ 72%] 629s tests/test_ext.py::TestProfile::test_10c_compress_64 PASSED [ 73%] 629s tests/test_ext.py::TestProfile::test_10c_compress_z64 PASSED [ 75%] 629s tests/test_ext.py::TestProfile::test_10d_decompress_64 PASSED [ 76%] 629s tests/test_ext.py::TestProfile::test_10d_decompress_z64 PASSED [ 77%] 629s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_AVX PASSED [ 78%] 629s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_AVX512 PASSED [ 80%] 629s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_SSE PASSED [ 81%] 629s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_scal PASSED [ 82%] 629s tests/test_ext.py::TestOddLengths::test_trans_byte_elem_SSE PASSED [ 83%] 629s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_AVX PASSED [ 85%] 629s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_AVX512 PASSED [ 86%] 629s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_SSE PASSED [ 87%] 629s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_scal PASSED [ 88%] 630s tests/test_ext.py::TestBitShuffleCircle::test_circle PASSED [ 90%] 632s tests/test_ext.py::TestBitShuffleCircle::test_circle_with_compression PASSED [ 91%] 633s tests/test_ext.py::TestBitShuffleCircle::test_circle_with_zstd_compression PASSED [ 92%] 633s tests/test_h5filter.py::TestFilter::test_filter PASSED [ 93%] 633s tests/test_h5filter.py::TestFilter::test_with_block_size PASSED [ 95%] 633s tests/test_h5filter.py::TestFilter::test_with_lz4_compression PASSED [ 96%] 633s tests/test_h5filter.py::TestFilter::test_with_zstd_compression PASSED [ 97%] 633s tests/test_h5plugin.py::TestFilterPlugins::test_plugins PASSED [ 98%] 633s tests/test_regression.py::TestAll::test_regression PASSED [100%] 633s 633s ============================== 80 passed in 4.99s ============================== 634s autopkgtest [16:43:49]: test testsuite: -----------------------] 638s autopkgtest [16:43:53]: test testsuite: - - - - - - - - - - results - - - - - - - - - - 638s testsuite PASS 642s autopkgtest [16:43:57]: @@@@@@@@@@@@@@@@@@@@ summary 642s command1 PASS 642s command2 PASS 642s testsuite PASS