0s autopkgtest [09:34:49]: starting date and time: 2024-12-03 09:34:49+0000 0s autopkgtest [09:34:49]: git checkout: be626eda Fix armhf LXD image generation for plucky 0s autopkgtest [09:34:49]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g5laeojs/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numcodecs,src:python3-defaults --apt-upgrade zarr --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=numcodecs/0.14.1+ds-1 python3-defaults/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-19.secgroup --name adt-plucky-arm64-zarr-20241203-093449-juju-7f2275-prod-proposed-migration-environment-20-3a56ec3a-4fc5-48a5-a4aa-f25053044ff0 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 236s autopkgtest [09:38:45]: testbed dpkg architecture: arm64 236s autopkgtest [09:38:45]: testbed apt version: 2.9.14ubuntu1 237s autopkgtest [09:38:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 237s autopkgtest [09:38:46]: testbed release detected to be: None 238s autopkgtest [09:38:47]: updating testbed package index (apt update) 238s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 238s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 238s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 239s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 239s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [65.3 kB] 239s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.1 kB] 239s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [781 kB] 239s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 239s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [145 kB] 239s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [58.2 kB] 239s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [669 kB] 239s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [21.3 kB] 239s Fetched 1838 kB in 1s (1890 kB/s) 241s Reading package lists... 242s Reading package lists... 242s Building dependency tree... 242s Reading state information... 244s Calculating upgrade... 245s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 245s Reading package lists... 246s Building dependency tree... 246s Reading state information... 247s 0 upgraded, 0 newly installed, 0 to remove and 3 not upgraded. 247s autopkgtest [09:38:56]: upgrading testbed (apt dist-upgrade and autopurge) 247s Reading package lists... 248s Building dependency tree... 248s Reading state information... 249s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 250s Starting 2 pkgProblemResolver with broken count: 0 250s Done 252s Entering ResolveByKeep 252s 253s The following packages will be upgraded: 253s libpython3-stdlib python3 python3-minimal 254s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 254s Need to get 61.4 kB of archives. 254s After this operation, 0 B of additional disk space will be used. 254s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 254s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 254s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 255s Fetched 61.4 kB in 0s (202 kB/s) 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80333 files and directories currently installed.) 255s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 255s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 255s Setting up python3-minimal (3.12.7-1) ... 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80333 files and directories currently installed.) 255s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 255s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 256s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 256s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 256s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 256s Setting up python3 (3.12.7-1) ... 256s Processing triggers for man-db (2.13.0-1) ... 258s Reading package lists... 258s Building dependency tree... 258s Reading state information... 259s Starting pkgProblemResolver with broken count: 0 259s Starting 2 pkgProblemResolver with broken count: 0 259s Done 260s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 263s autopkgtest [09:39:12]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 263s autopkgtest [09:39:12]: @@@@@@@@@@@@@@@@@@@@ apt-source zarr 266s Get:1 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-2 (dsc) [2647 B] 266s Get:2 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-2 (tar) [984 kB] 266s Get:3 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-2 (diff) [5668 B] 266s gpgv: Signature made Wed Nov 27 08:45:27 2024 UTC 266s gpgv: using RSA key 3B70F209A5FFD68903C472C5EBF48AB2578F9812 266s gpgv: issuer "antonio.valentino@tiscali.it" 266s gpgv: Can't check signature: No public key 266s dpkg-source: warning: cannot verify inline signature for ./zarr_2.18.3+ds-2.dsc: no acceptable signature found 266s autopkgtest [09:39:15]: testing package zarr version 2.18.3+ds-2 267s autopkgtest [09:39:16]: build not needed 267s autopkgtest [09:39:16]: test pybuild-autopkgtest: preparing testbed 268s Reading package lists... 268s Building dependency tree... 268s Reading state information... 269s Starting pkgProblemResolver with broken count: 0 269s Starting 2 pkgProblemResolver with broken count: 0 269s Done 271s The following NEW packages will be installed: 271s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 271s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper debugedit 271s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz g++ 271s g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 271s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian 271s libaec0 libarchive-zip-perl libasan8 libblas3 libblosc1 libcc1-0 271s libdebhelper-perl libfile-stripnondeterminism-perl libgcc-14-dev 271s libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libisl23 271s libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libjson-perl 271s liblapack3 liblsan0 liblzf1 libmpc3 libpython3.13-minimal 271s libpython3.13-stdlib libsnappy1v5 libstdc++-14-dev libsz2 libtool libtsan2 271s libubsan1 m4 po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject 271s python3-alabaster python3-all python3-asciitree python3-bs4 python3-build 271s python3-defusedxml python3-docutils python3-fasteners python3-fsspec 271s python3-h5py python3-h5py-serial python3-imagesize python3-iniconfig 271s python3-installer python3-monotonic python3-msgpack python3-numcodecs 271s python3-numpy python3-numpydoc python3-packaging python3-pluggy 271s python3-pydata-sphinx-theme python3-pyproject-hooks python3-pytest 271s python3-pytest-doctestplus python3-pytest-timeout python3-roman 271s python3-setuptools-scm python3-snowballstemmer python3-soupsieve 271s python3-sphinx python3-sphinx-automodapi python3-sphinx-copybutton 271s python3-sphinx-design python3-sphinx-issues python3-tabulate python3-toml 271s python3-wheel python3-zarr python3.13 python3.13-minimal sphinx-common 271s 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. 271s Need to get 85.4 MB of archives. 271s After this operation, 335 MB of additional disk space will be used. 271s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 271s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 271s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB] 271s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB] 271s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 271s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 271s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB] 271s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 271s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 271s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-9ubuntu1 [10.6 MB] 272s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-9ubuntu1 [1030 B] 272s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 272s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 272s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-9ubuntu1 [49.6 kB] 272s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-9ubuntu1 [145 kB] 272s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-9ubuntu1 [27.7 kB] 272s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-9ubuntu1 [2892 kB] 272s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-9ubuntu1 [1283 kB] 272s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-9ubuntu1 [2687 kB] 272s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-9ubuntu1 [1152 kB] 272s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-9ubuntu1 [1599 kB] 272s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-9ubuntu1 [2594 kB] 272s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-9ubuntu1 [20.9 MB] 272s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-9ubuntu1 [520 kB] 272s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 272s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 272s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-9ubuntu1 [2473 kB] 273s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-9ubuntu1 [12.1 MB] 273s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-9ubuntu1 [20.1 kB] 273s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 273s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 273s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 273s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 273s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-8 [166 kB] 273s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB] 273s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 273s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 273s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 273s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB] 273s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB] 273s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB] 273s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 273s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 273s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB] 273s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB] 273s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB] 273s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 273s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-4 [152 kB] 273s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB] 273s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB] 273s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-9ubuntu1 [437 kB] 273s Get:52 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 273s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 273s Get:54 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 273s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 273s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 273s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 273s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libjson-perl all 4.10000-1 [81.9 kB] 273s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-4 [2305 kB] 273s Get:60 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 273s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 273s Get:62 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 273s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 273s Get:64 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 273s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-toml all 0.10.2-1 [16.5 kB] 273s Get:66 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-wheel all 0.45.1-1 [57.7 kB] 273s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-build all 1.2.2-1 [31.0 kB] 273s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 273s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-pyproject all 6.20241024 [1728 B] 273s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 273s Get:71 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 273s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-asciitree all 0.3.3-4 [5644 B] 273s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-soupsieve all 2.6-1 [33.0 kB] 273s Get:74 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-bs4 all 4.12.3-3 [109 kB] 273s Get:75 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-defusedxml all 0.7.1-2 [42.0 kB] 273s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-roman all 4.2-1 [10.0 kB] 273s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 273s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-monotonic all 1.6-2 [5732 B] 273s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-fasteners all 0.18-2 [12.5 kB] 273s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fsspec all 2024.9.0-1 [207 kB] 274s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB] 274s Get:82 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-5ubuntu1 [1064 kB] 274s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-5ubuntu1 [7974 B] 274s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-imagesize all 1.4.1-1 [6844 B] 274s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 274s Get:86 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-msgpack arm64 1.0.3-3build3 [106 kB] 274s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-common all 7.4.7-4 [775 kB] 274s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 274s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 274s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sphinx all 7.4.7-4 [593 kB] 274s Get:91 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pydata-sphinx-theme all 0.15.4+dfsg-2 [41.5 kB] 274s Get:92 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-numcodecs arm64 0.14.1+ds-1 [494 kB] 274s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tabulate all 0.9.0-1 [45.3 kB] 274s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-numpydoc all 1.8.0-1 [52.4 kB] 274s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 274s Get:96 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 274s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-doctestplus all 1.3.0-1 [23.7 kB] 274s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-timeout all 2.3.1-1 [22.1 kB] 274s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-setuptools-scm all 8.1.0-1 [32.2 kB] 274s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-automodapi all 0.18.0-1 [37.6 kB] 274s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-copybutton all 0.5.2-2 [16.6 kB] 274s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-design all 0.6.1-1 [894 kB] 274s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-issues all 5.0.0-1 [10.2 kB] 274s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-zarr all 2.18.3+ds-2 [409 kB] 275s Fetched 85.4 MB in 4s (22.1 MB/s) 275s Selecting previously unselected package libpython3.13-minimal:arm64. 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80333 files and directories currently installed.) 275s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_arm64.deb ... 275s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 275s Selecting previously unselected package python3.13-minimal. 275s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_arm64.deb ... 275s Unpacking python3.13-minimal (3.13.0-2) ... 276s Selecting previously unselected package m4. 276s Preparing to unpack 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unselected package libubsan1:arm64. 277s Preparing to unpack .../019-libubsan1_14.2.0-9ubuntu1_arm64.deb ... 277s Unpacking libubsan1:arm64 (14.2.0-9ubuntu1) ... 277s Selecting previously unselected package libhwasan0:arm64. 277s Preparing to unpack .../020-libhwasan0_14.2.0-9ubuntu1_arm64.deb ... 277s Unpacking libhwasan0:arm64 (14.2.0-9ubuntu1) ... 277s Selecting previously unselected package libgcc-14-dev:arm64. 277s Preparing to unpack .../021-libgcc-14-dev_14.2.0-9ubuntu1_arm64.deb ... 277s Unpacking libgcc-14-dev:arm64 (14.2.0-9ubuntu1) ... 277s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 278s Preparing to unpack .../022-gcc-14-aarch64-linux-gnu_14.2.0-9ubuntu1_arm64.deb ... 278s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-9ubuntu1) ... 278s Selecting previously unselected package gcc-14. 278s Preparing to unpack .../023-gcc-14_14.2.0-9ubuntu1_arm64.deb ... 278s Unpacking gcc-14 (14.2.0-9ubuntu1) ... 278s Selecting previously unselected package 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package gettext. 280s Preparing to unpack .../040-gettext_0.22.5-2_arm64.deb ... 280s Unpacking gettext (0.22.5-2) ... 280s Selecting previously unselected package intltool-debian. 280s Preparing to unpack .../041-intltool-debian_0.35.0+20060710.6_all.deb ... 280s Unpacking intltool-debian (0.35.0+20060710.6) ... 280s Selecting previously unselected package po-debconf. 280s Preparing to unpack .../042-po-debconf_1.0.21+nmu1_all.deb ... 280s Unpacking po-debconf (1.0.21+nmu1) ... 280s Selecting previously unselected package debhelper. 280s Preparing to unpack .../043-debhelper_13.20ubuntu1_all.deb ... 280s Unpacking debhelper (13.20ubuntu1) ... 280s Selecting previously unselected package dh-python. 280s Preparing to unpack .../044-dh-python_6.20241024_all.deb ... 280s Unpacking dh-python (6.20241024) ... 280s Selecting previously unselected package docutils-common. 280s Preparing to unpack .../045-docutils-common_0.21.2+dfsg-2_all.deb ... 280s Unpacking docutils-common (0.21.2+dfsg-2) ... 280s Selecting previously unselected package libaec0:arm64. 280s Preparing to unpack .../046-libaec0_1.1.3-1_arm64.deb ... 280s Unpacking libaec0:arm64 (1.1.3-1) ... 281s Selecting previously unselected package libblas3:arm64. 281s Preparing to unpack .../047-libblas3_3.12.0-4_arm64.deb ... 281s Unpacking libblas3:arm64 (3.12.0-4) ... 281s Selecting previously unselected package libsnappy1v5:arm64. 281s Preparing to unpack .../048-libsnappy1v5_1.2.1-1_arm64.deb ... 281s Unpacking libsnappy1v5:arm64 (1.2.1-1) ... 281s Selecting previously unselected package libblosc1:arm64. 281s Preparing to unpack .../049-libblosc1_1.21.5+ds-1build1_arm64.deb ... 281s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ... 281s Selecting previously unselected package libgfortran5:arm64. 281s Preparing to unpack .../050-libgfortran5_14.2.0-9ubuntu1_arm64.deb ... 281s Unpacking libgfortran5:arm64 (14.2.0-9ubuntu1) ... 281s Selecting previously unselected package libsz2:arm64. 281s Preparing to unpack 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python3-snowballstemmer (2.2.0-4build1) ... 284s Selecting previously unselected package python3-sphinx. 284s Preparing to unpack .../089-python3-sphinx_7.4.7-4_all.deb ... 284s Unpacking python3-sphinx (7.4.7-4) ... 284s Selecting previously unselected package python3-pydata-sphinx-theme. 284s Preparing to unpack .../090-python3-pydata-sphinx-theme_0.15.4+dfsg-2_all.deb ... 284s Unpacking python3-pydata-sphinx-theme (0.15.4+dfsg-2) ... 284s Selecting previously unselected package python3-numcodecs. 284s Preparing to unpack .../091-python3-numcodecs_0.14.1+ds-1_arm64.deb ... 284s Unpacking python3-numcodecs (0.14.1+ds-1) ... 284s Selecting previously unselected package python3-tabulate. 284s Preparing to unpack .../092-python3-tabulate_0.9.0-1_all.deb ... 284s Unpacking python3-tabulate (0.9.0-1) ... 284s Selecting previously unselected package python3-numpydoc. 284s Preparing to unpack .../093-python3-numpydoc_1.8.0-1_all.deb ... 284s Unpacking python3-numpydoc (1.8.0-1) ... 284s 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Setting up python3-zarr (2.18.3+ds-2) ... 319s autopkgtest [09:40:08]: test pybuild-autopkgtest: pybuild-autopkgtest 319s autopkgtest [09:40:08]: test pybuild-autopkgtest: [----------------------- 320s pybuild-autopkgtest 322s I: pybuild base:311: cd /tmp/autopkgtest.GghWWj/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 326s ============================= test session starts ============================== 326s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 326s rootdir: /tmp/autopkgtest.GghWWj/autopkgtest_tmp/build 326s configfile: pyproject.toml 326s plugins: doctestplus-1.3.0, typeguard-4.4.1, timeout-2.3.1 326s collected 5174 items / 769 deselected / 4405 selected 326s 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[100%] 432s 432s ==================================== ERRORS ==================================== 432s ____________ ERROR at setup of TestCopy.test_copy_array[zarr-hdf5] _____________ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_zarr_hdf5_0') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def dest(self, request, tmpdir): 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 432s ____________ ERROR at setup of TestCopy.test_copy_array[hdf5-zarr] _____________ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_hdf5_zarr_0') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 432s ____________ ERROR at setup of TestCopy.test_copy_array[hdf5-hdf5] _____________ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_hdf5_hdf5_0') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 432s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[zarr-hdf5] ___________ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_zarr_hdf5_0') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def dest(self, request, tmpdir): 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 432s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[hdf5-zarr] ___________ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_hdf5_zarr_0') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 432s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[hdf5-hdf5] ___________ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_hdf5_hdf5_0') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 432s __________ ERROR at setup of TestCopy.test_copy_array_name[zarr-hdf5] __________ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_zarr_hdf50') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def dest(self, request, tmpdir): 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 432s __________ ERROR at setup of TestCopy.test_copy_array_name[hdf5-zarr] __________ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_hdf5_zarr0') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 432s __________ ERROR at setup of TestCopy.test_copy_array_name[hdf5-hdf5] __________ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_hdf5_hdf50') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 432s _____ ERROR at setup of TestCopy.test_copy_array_create_options[zarr-hdf5] _____ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options1') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def dest(self, request, tmpdir): 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 432s _____ ERROR at setup of TestCopy.test_copy_array_create_options[hdf5-zarr] _____ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options2') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 432s _____ ERROR at setup of TestCopy.test_copy_array_create_options[hdf5-hdf5] _____ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options3') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 432s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[zarr-hdf5] ______ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_z1') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def dest(self, request, tmpdir): 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 432s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[hdf5-zarr] ______ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_h0') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 432s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[hdf5-hdf5] ______ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_h1') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 432s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[zarr-hdf5] ______ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_z1') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def dest(self, request, tmpdir): 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 432s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[hdf5-zarr] ______ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_h0') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 432s > h5py = pytest.importorskip("h5py") 432s E pytest.PytestDeprecationWarning: 432s E Module 'h5py' was found, but when imported by pytest it raised: 432s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 432s E In pytest 9.1 this warning will become an error by default. 432s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 432s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 432s 432s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 432s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[hdf5-hdf5] ______ 432s 432s self = 432s request = > 432s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_h1') 432s 432s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 432s def source(self, request, tmpdir): 432s def prep_source(source): 432s foo = source.create_group("foo") 432s foo.attrs["experiment"] = "weird science" 432s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 432s baz.attrs["units"] = "metres" 432s if request.param: 432s extra_kws = dict( 432s compression="gzip", 432s compression_opts=3, 432s fillvalue=84, 432s shuffle=True, 432s fletcher32=True, 432s ) 432s else: 432s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 432s source.create_dataset( 432s "spam", 432s data=np.arange(100, 200).reshape(20, 5), 432s chunks=(10, 2), 432s dtype="i2", 432s **extra_kws, 432s ) 432s return source 432s 432s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[zarr-hdf5] ____ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ1') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def dest(self, request, tmpdir): 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 433s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[hdf5-zarr] ____ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ2') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[hdf5-hdf5] ____ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ3') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ____________ ERROR at setup of TestCopy.test_copy_group[zarr-hdf5] _____________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_zarr_hdf5_0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def dest(self, request, tmpdir): 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 433s ____________ ERROR at setup of TestCopy.test_copy_group[hdf5-zarr] _____________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_hdf5_zarr_0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ____________ ERROR at setup of TestCopy.test_copy_group[hdf5-hdf5] _____________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_hdf5_hdf5_0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_no_name[zarr-hdf5] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_zarr_h0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def dest(self, request, tmpdir): 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_no_name[hdf5-zarr] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_hdf5_z0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_no_name[hdf5-hdf5] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_hdf5_h0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_options[zarr-hdf5] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_zarr_h0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def dest(self, request, tmpdir): 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_options[hdf5-zarr] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_hdf5_z0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_options[hdf5-hdf5] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_hdf5_h0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_shallow[zarr-hdf5] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_zarr_h0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def dest(self, request, tmpdir): 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_shallow[hdf5-zarr] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_hdf5_z0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_shallow[hdf5-hdf5] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_hdf5_h0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[zarr-hdf5] ______ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_z1') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def dest(self, request, tmpdir): 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 433s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[hdf5-zarr] ______ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_h0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[hdf5-hdf5] ______ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_h1') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[zarr-hdf5] ______ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_z1') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def dest(self, request, tmpdir): 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 433s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[hdf5-zarr] ______ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_h0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[hdf5-hdf5] ______ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_h1') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[zarr-hdf5] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_zarr_h0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def dest(self, request, tmpdir): 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[hdf5-zarr] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_hdf5_z0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[hdf5-hdf5] _________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_hdf5_h0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ______________ ERROR at setup of TestCopy.test_logging[zarr-hdf5] ______________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_zarr_hdf5_0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def dest(self, request, tmpdir): 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning 433s ______________ ERROR at setup of TestCopy.test_logging[hdf5-zarr] ______________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_hdf5_zarr_0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s ______________ ERROR at setup of TestCopy.test_logging[hdf5-hdf5] ______________ 433s 433s self = 433s request = > 433s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_hdf5_hdf5_0') 433s 433s @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"]) 433s def source(self, request, tmpdir): 433s def prep_source(source): 433s foo = source.create_group("foo") 433s foo.attrs["experiment"] = "weird science" 433s baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,)) 433s baz.attrs["units"] = "metres" 433s if request.param: 433s extra_kws = dict( 433s compression="gzip", 433s compression_opts=3, 433s fillvalue=84, 433s shuffle=True, 433s fletcher32=True, 433s ) 433s else: 433s extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()]) 433s source.create_dataset( 433s "spam", 433s data=np.arange(100, 200).reshape(20, 5), 433s chunks=(10, 2), 433s dtype="i2", 433s **extra_kws, 433s ) 433s return source 433s 433s if request.param: 433s > h5py = pytest.importorskip("h5py") 433s E pytest.PytestDeprecationWarning: 433s E Module 'h5py' was found, but when imported by pytest it raised: 433s E ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)") 433s E In pytest 9.1 this warning will become an error by default. 433s E You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly. 433s E See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror 433s 433s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning 433s =============================== warnings summary =============================== 433s tests/test_core.py::TestArrayWithDBMStore::test_array_1d 433s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 433s 433s Traceback (most recent call last): 433s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in 433s chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) 433s 433s ResourceWarning: unclosed database in 433s 433s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 433s 433s tests/test_core.py::TestArrayWithDBMStore::test_object_arrays_danger 433s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 433s 433s Traceback (most recent call last): 433s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in 433s chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections) 433s 433s ResourceWarning: unclosed database in 433s 433s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 433s 433s tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 433s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 433s 433s Traceback (most recent call last): 433s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 356, in 433s chunk_selection = tuple(p.dim_chunk_sel for p in dim_projections) 433s 433s ResourceWarning: unclosed database in 433s 433s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 433s 433s tests/test_core.py::TestArrayWithSQLiteStore::test_object_arrays_vlen_text 433s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 433s 433s Traceback (most recent call last): 433s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 219, in __iter__ 433s dim_chunk_sel = slice(dim_chunk_sel_start, dim_chunk_sel_stop, self.step) 433s ResourceWarning: unclosed database in 433s 433s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 433s 433s tests/test_core.py::TestArrayWithNoCompressor::test_array_2d 433s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 433s 433s Traceback (most recent call last): 433s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 357, in 433s out_selection = tuple( 433s 433s ResourceWarning: unclosed database in 433s 433s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 433s 433s tests/test_core.py::TestArrayWithBZ2Compressor::test_resize_2d 433s /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: 433s 433s Traceback (most recent call last): 433s File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 357, in 433s out_selection = tuple( 433s 433s ResourceWarning: unclosed database in 433s 433s warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) 433s 433s tests/test_filters.py::test_array_with_scaleoffset_filter 433s /usr/lib/python3/dist-packages/numcodecs/fixedscaleoffset.py:97: RuntimeWarning: invalid value encountered in cast 433s enc = enc.astype(self.astype, copy=False) 433s 433s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray 433s /usr/lib/python3.13/zipfile/__init__.py:1638: UserWarning: Duplicate name: 'foo' 433s return self._open_to_write(zinfo, force_zip64=force_zip64) 433s 433s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 433s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 433s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 433s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 433s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 433s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 433s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 433s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 433s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3388) is multi-threaded, use of fork() may lead to deadlocks in the child. 433s self.pid = os.fork() 433s 433s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 433s ============================= slowest 10 durations ============================= 433s 9.80s call tests/test_indexing.py::test_set_orthogonal_selection_3d 433s 3.55s call tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 433s 2.06s call tests/test_storage.py::test_format_compatibility 433s 1.76s call tests/test_core.py::TestArrayWithSQLiteStore::test_islice 433s 1.72s call tests/test_core.py::TestArrayWithSQLiteStore::test_iter 433s 1.60s call tests/test_core.py::TestArrayWithDBMStore::test_iter 433s 1.59s call tests/test_core.py::TestArrayWithDBMStore::test_islice 433s 1.55s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d 433s 1.48s call tests/test_core.py::TestArrayWithDBMStore::test_append_2d_axis 433s 1.46s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis 433s =========================== short test summary info ============================ 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array[zarr-hdf5] - pytes... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array[hdf5-zarr] - pytes... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array[hdf5-hdf5] - pytes... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[zarr-hdf5] - py... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[hdf5-zarr] - py... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[hdf5-hdf5] - py... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[zarr-hdf5] - ... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[hdf5-zarr] - ... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[hdf5-hdf5] - ... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[zarr-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[hdf5-zarr] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[hdf5-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[zarr-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[hdf5-zarr] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[hdf5-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[zarr-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[hdf5-zarr] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[hdf5-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[zarr-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[hdf5-zarr] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[hdf5-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group[zarr-hdf5] - pytes... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group[hdf5-zarr] - pytes... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group[hdf5-hdf5] - pytes... 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[zarr-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[hdf5-zarr] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[hdf5-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[zarr-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[hdf5-zarr] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[hdf5-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[zarr-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[hdf5-zarr] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[hdf5-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[zarr-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[hdf5-zarr] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[hdf5-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[zarr-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[hdf5-zarr] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[hdf5-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[zarr-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[hdf5-zarr] 433s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[hdf5-hdf5] 433s ERROR tests/test_convenience.py::TestCopy::test_logging[zarr-hdf5] - pytest.P... 433s ERROR tests/test_convenience.py::TestCopy::test_logging[hdf5-zarr] - pytest.P... 433s ERROR tests/test_convenience.py::TestCopy::test_logging[hdf5-hdf5] - pytest.P... 433s = 2205 passed, 2151 skipped, 769 deselected, 4 xfailed, 16 warnings, 45 errors in 109.03s (0:01:49) = 434s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest.GghWWj/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 434s I: pybuild base:311: cd /tmp/autopkgtest.GghWWj/autopkgtest_tmp/build; python3.12 -m pytest -k "not test_hierarchy and not test_complex and not test_array_with_delta_filter and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr 438s ============================= test session starts ============================== 438s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 438s rootdir: /tmp/autopkgtest.GghWWj/autopkgtest_tmp/build 438s configfile: pyproject.toml 438s plugins: doctestplus-1.3.0, typeguard-4.4.1, timeout-2.3.1 438s collected 5174 items / 769 deselected / 4405 selected 438s 438s tests/test_attrs.py .................. 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[ 57%] 485s tests/test_creation.py ................................................. [ 58%] 485s ..................................ss..... [ 59%] 485s tests/test_dim_separator.py ..........................x....x [ 60%] 485s tests/test_filters.py ...... [ 60%] 498s tests/test_indexing.py ................................................. [ 61%] 498s ......xx...... [ 61%] 498s tests/test_info.py .. [ 61%] 498s tests/test_meta.py ......................... [ 62%] 498s tests/test_meta_array.py .sss.sss.sss.sss.sss.sss.sss.sss..ssssss..sssss [ 63%] 498s s..ssssss..ssssss [ 63%] 498s tests/test_n5.py ..... [ 63%] 499s tests/test_storage.py ...................s........................s..... [ 65%] 499s ...................s.................................................... [ 66%] 499s .......................ss..............s................................ [ 68%] 499s ........................................................................ 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[100%] 507s 507s =============================== warnings summary =============================== 507s tests/test_filters.py::test_array_with_scaleoffset_filter 507s /usr/lib/python3/dist-packages/numcodecs/fixedscaleoffset.py:97: RuntimeWarning: invalid value encountered in cast 507s enc = enc.astype(self.astype, copy=False) 507s 507s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray 507s /usr/lib/python3.12/zipfile/__init__.py:1607: UserWarning: Duplicate name: 'foo' 507s return self._open_to_write(zinfo, force_zip64=force_zip64) 507s 507s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 507s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem 507s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 507s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append 507s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 507s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group 507s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 507s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group 507s /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=3433) is multi-threaded, use of fork() may lead to deadlocks in the child. 507s self.pid = os.fork() 507s 507s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 507s ============================= slowest 10 durations ============================= 507s 9.73s call tests/test_indexing.py::test_set_orthogonal_selection_3d 507s 1.61s call tests/test_core.py::TestArrayWithSQLiteStore::test_islice 507s 1.56s call tests/test_core.py::TestArrayWithSQLiteStore::test_iter 507s 1.38s call tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont 507s 1.18s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis 507s 1.17s call tests/test_indexing.py::test_set_orthogonal_selection_2d 507s 1.10s call tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_non_cont 507s 1.05s call tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d 507s 1.02s call tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d 507s 0.89s call tests/test_core.py::TestArrayWithSQLiteStore::test_array_order 507s = 2250 passed, 2151 skipped, 769 deselected, 4 xfailed, 10 warnings in 72.48s (0:01:12) = 509s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13 509s make: *** [/tmp/jWqO_7u4vM/run:4: pybuild-autopkgtest] Error 25 509s pybuild-autopkgtest: error: /tmp/jWqO_7u4vM/run pybuild-autopkgtest returned exit code 2 509s autopkgtest [09:43:18]: test pybuild-autopkgtest: -----------------------] 510s autopkgtest [09:43:19]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 510s pybuild-autopkgtest FAIL non-zero exit status 25 510s autopkgtest [09:43:19]: @@@@@@@@@@@@@@@@@@@@ summary 510s pybuild-autopkgtest FAIL non-zero exit status 25 523s nova [W] Using flock in prodstack6-arm64 523s flock: timeout while waiting to get lock 523s Creating nova instance adt-plucky-arm64-zarr-20241203-093449-juju-7f2275-prod-proposed-migration-environment-20-3a56ec3a-4fc5-48a5-a4aa-f25053044ff0 from image adt/ubuntu-plucky-arm64-server-20241203.img (UUID b9293590-1195-42ea-ba16-5ab4b1e94eab)...