0s autopkgtest [20:30:27]: starting date and time: 2024-11-23 20:30:27+0000
  0s autopkgtest [20:30:27]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [20:30:27]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xj2vd2p_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numcodecs,src:python3-defaults --apt-upgrade zarr --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=numcodecs/0.14.1+ds-1 python3-defaults/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-25.secgroup --name adt-plucky-arm64-zarr-20241123-203027-juju-7f2275-prod-proposed-migration-environment-15-9a2d613a-537a-4251-9c48-f8bc7c77d503 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
127s autopkgtest [20:32:34]: testbed dpkg architecture: arm64
128s autopkgtest [20:32:35]: testbed apt version: 2.9.8
128s autopkgtest [20:32:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup
141s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
142s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [930 kB]
142s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9704 B]
142s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.6 kB]
142s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [54.8 kB]
142s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [87.1 kB]
142s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [57.8 kB]
142s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [796 kB]
142s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [19.3 kB]
142s Fetched 2043 kB in 1s (2196 kB/s)
142s Reading package lists...
170s Reading package lists...
170s Building dependency tree...
170s Reading state information...
171s Calculating upgrade...
172s The following package was automatically installed and is no longer required:
172s   libsgutils2-1.46-2
172s Use 'sudo apt autoremove' to remove it.
172s The following NEW packages will be installed:
172s   libsgutils2-1.48
172s The following packages will be upgraded:
172s   bash bpftrace curl debconf debconf-i18n distro-info fwupd-signed
172s   gir1.2-girepository-2.0 gir1.2-glib-2.0 hostname libaudit-common libaudit1
172s   libcurl3t64-gnutls libcurl4t64 libgirepository-1.0-1 libglib2.0-0t64
172s   libglib2.0-data libpam-modules libpam-modules-bin libpam-runtime libpam0g
172s   libplymouth5 libpython3-stdlib libselinux1 libsemanage-common libsemanage2
172s   linux-base lxd-installer openssh-client openssh-server openssh-sftp-server
172s   plymouth plymouth-theme-ubuntu-text python3 python3-blinker python3-dbus
172s   python3-debconf python3-gi python3-jsonschema-specifications python3-minimal
172s   python3-rpds-py python3-yaml sg3-utils sg3-utils-udev vim-common vim-tiny
172s   xxd
172s 47 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
172s Need to get 11.7 MB of archives.
172s After this operation, 2983 kB of additional disk space will be used.
172s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 bash arm64 5.2.32-1ubuntu2 [791 kB]
172s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 hostname arm64 3.25 [11.0 kB]
172s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libaudit-common all 1:4.0.2-2ubuntu1 [6578 B]
172s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libaudit1 arm64 1:4.0.2-2ubuntu1 [54.2 kB]
172s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 debconf-i18n all 1.5.87ubuntu1 [204 kB]
172s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB]
172s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB]
172s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB]
172s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-debconf all 1.5.87ubuntu1 [4156 B]
172s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 debconf all 1.5.87ubuntu1 [124 kB]
172s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libpam0g arm64 1.5.3-7ubuntu4 [68.6 kB]
172s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 libselinux1 arm64 3.7-3ubuntu1 [81.6 kB]
172s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libpam-modules-bin arm64 1.5.3-7ubuntu4 [50.4 kB]
172s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libpam-modules arm64 1.5.3-7ubuntu4 [285 kB]
172s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 openssh-sftp-server arm64 1:9.9p1-3ubuntu2 [36.8 kB]
172s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 openssh-server arm64 1:9.9p1-3ubuntu2 [524 kB]
172s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 openssh-client arm64 1:9.9p1-3ubuntu2 [920 kB]
173s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libpam-runtime all 1.5.3-7ubuntu4 [40.8 kB]
173s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libsemanage-common all 3.7-2build1 [7186 B]
173s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libsemanage2 arm64 3.7-2build1 [92.2 kB]
173s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 distro-info arm64 1.12 [19.4 kB]
173s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 gir1.2-girepository-2.0 arm64 1.82.0-2 [25.2 kB]
173s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 gir1.2-glib-2.0 arm64 2.82.2-3 [182 kB]
173s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1560 kB]
173s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 libgirepository-1.0-1 arm64 1.82.0-2 [83.0 kB]
173s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libglib2.0-data all 2.82.2-3 [51.7 kB]
173s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dbus arm64 1.3.2-5build4 [109 kB]
173s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-gi arm64 3.50.0-3build1 [279 kB]
173s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-yaml arm64 6.0.2-1build1 [164 kB]
173s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 vim-tiny arm64 2:9.1.0861-1ubuntu1 [805 kB]
173s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 vim-common all 2:9.1.0861-1ubuntu1 [395 kB]
173s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 xxd arm64 2:9.1.0861-1ubuntu1 [67.3 kB]
173s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libplymouth5 arm64 24.004.60-2ubuntu3 [141 kB]
173s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 plymouth-theme-ubuntu-text arm64 24.004.60-2ubuntu3 [9914 B]
173s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 plymouth arm64 24.004.60-2ubuntu3 [135 kB]
173s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 bpftrace arm64 0.21.2-2ubuntu3 [1854 kB]
173s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 curl arm64 8.9.1-2ubuntu3 [235 kB]
173s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl4t64 arm64 8.9.1-2ubuntu3 [365 kB]
173s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 fwupd-signed arm64 1.55+1.7-1 [30.9 kB]
173s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl3t64-gnutls arm64 8.9.1-2ubuntu3 [359 kB]
173s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 libsgutils2-1.48 arm64 1.48-0ubuntu1 [118 kB]
173s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 linux-base all 4.10.1ubuntu1 [34.8 kB]
173s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 lxd-installer all 10 [5264 B]
173s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-blinker all 1.9.0-1 [10.7 kB]
173s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-rpds-py arm64 0.21.0-2ubuntu1 [302 kB]
173s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jsonschema-specifications all 2023.12.1-2 [9116 B]
173s Get:47 http://ftpmaster.internal/ubuntu plucky/main arm64 sg3-utils arm64 1.48-0ubuntu1 [999 kB]
173s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 sg3-utils-udev all 1.48-0ubuntu1 [6608 B]
174s Preconfiguring packages ...
174s Fetched 11.7 MB in 1s (8590 kB/s)
174s (Reading database ... 
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174s Preparing to unpack .../bash_5.2.32-1ubuntu2_arm64.deb ...
174s Unpacking bash (5.2.32-1ubuntu2) over (5.2.32-1ubuntu1) ...
174s Setting up bash (5.2.32-1ubuntu2) ...
174s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
174s (Reading database ... 
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174s Preparing to unpack .../hostname_3.25_arm64.deb ...
174s Unpacking hostname (3.25) over (3.23+nmu2ubuntu2) ...
174s Setting up hostname (3.25) ...
174s (Reading database ... 
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174s Preparing to unpack .../libaudit-common_1%3a4.0.2-2ubuntu1_all.deb ...
174s Unpacking libaudit-common (1:4.0.2-2ubuntu1) over (1:4.0.1-1ubuntu2) ...
174s Setting up libaudit-common (1:4.0.2-2ubuntu1) ...
174s (Reading database ... 
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174s Preparing to unpack .../libaudit1_1%3a4.0.2-2ubuntu1_arm64.deb ...
174s Unpacking libaudit1:arm64 (1:4.0.2-2ubuntu1) over (1:4.0.1-1ubuntu2) ...
174s Setting up libaudit1:arm64 (1:4.0.2-2ubuntu1) ...
174s (Reading database ... 
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174s Preparing to unpack .../debconf-i18n_1.5.87ubuntu1_all.deb ...
174s Unpacking debconf-i18n (1.5.87ubuntu1) over (1.5.86ubuntu1) ...
175s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ...
175s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ...
175s Setting up python3-minimal (3.12.7-1) ...
175s (Reading database ... 
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175s Preparing to unpack .../python3_3.12.7-1_arm64.deb ...
175s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ...
175s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ...
175s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ...
175s Preparing to unpack .../python3-debconf_1.5.87ubuntu1_all.deb ...
175s Unpacking python3-debconf (1.5.87ubuntu1) over (1.5.86ubuntu1) ...
175s Preparing to unpack .../debconf_1.5.87ubuntu1_all.deb ...
175s Unpacking debconf (1.5.87ubuntu1) over (1.5.86ubuntu1) ...
175s Setting up debconf (1.5.87ubuntu1) ...
176s (Reading database ... 
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176s Preparing to unpack .../libpam0g_1.5.3-7ubuntu4_arm64.deb ...
176s Unpacking libpam0g:arm64 (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ...
176s Setting up libpam0g:arm64 (1.5.3-7ubuntu4) ...
176s (Reading database ... 
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176s Preparing to unpack .../libselinux1_3.7-3ubuntu1_arm64.deb ...
176s Unpacking libselinux1:arm64 (3.7-3ubuntu1) over (3.5-2ubuntu5) ...
176s Setting up libselinux1:arm64 (3.7-3ubuntu1) ...
176s (Reading database ... 
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176s Preparing to unpack .../libpam-modules-bin_1.5.3-7ubuntu4_arm64.deb ...
176s Unpacking libpam-modules-bin (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ...
176s Setting up libpam-modules-bin (1.5.3-7ubuntu4) ...
176s pam_namespace.service is a disabled or a static unit not running, not starting it.
176s (Reading database ... 
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176s Preparing to unpack .../libpam-modules_1.5.3-7ubuntu4_arm64.deb ...
176s Unpacking libpam-modules:arm64 (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ...
177s Setting up libpam-modules:arm64 (1.5.3-7ubuntu4) ...
177s (Reading database ... 
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177s Preparing to unpack .../openssh-sftp-server_1%3a9.9p1-3ubuntu2_arm64.deb ...
177s Unpacking openssh-sftp-server (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ...
177s Preparing to unpack .../openssh-server_1%3a9.9p1-3ubuntu2_arm64.deb ...
177s Unpacking openssh-server (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ...
177s Preparing to unpack .../openssh-client_1%3a9.9p1-3ubuntu2_arm64.deb ...
177s Unpacking openssh-client (1:9.9p1-3ubuntu2) over (1:9.7p1-7ubuntu5) ...
177s Preparing to unpack .../libpam-runtime_1.5.3-7ubuntu4_all.deb ...
177s Unpacking libpam-runtime (1.5.3-7ubuntu4) over (1.5.3-7ubuntu2) ...
177s Setting up libpam-runtime (1.5.3-7ubuntu4) ...
177s (Reading database ... 
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177s Preparing to unpack .../libsemanage-common_3.7-2build1_all.deb ...
177s Unpacking libsemanage-common (3.7-2build1) over (3.5-1build6) ...
177s Setting up libsemanage-common (3.7-2build1) ...
177s (Reading database ... 
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177s Preparing to unpack .../libsemanage2_3.7-2build1_arm64.deb ...
177s Unpacking libsemanage2:arm64 (3.7-2build1) over (3.5-1build6) ...
177s Setting up libsemanage2:arm64 (3.7-2build1) ...
178s (Reading database ... 
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178s Preparing to unpack .../00-distro-info_1.12_arm64.deb ...
178s Unpacking distro-info (1.12) over (1.9) ...
178s Preparing to unpack .../01-gir1.2-girepository-2.0_1.82.0-2_arm64.deb ...
178s Unpacking gir1.2-girepository-2.0:arm64 (1.82.0-2) over (1.80.1-4) ...
178s Preparing to unpack .../02-gir1.2-glib-2.0_2.82.2-3_arm64.deb ...
178s Unpacking gir1.2-glib-2.0:arm64 (2.82.2-3) over (2.82.1-0ubuntu1) ...
178s Preparing to unpack .../03-libglib2.0-0t64_2.82.2-3_arm64.deb ...
178s Unpacking libglib2.0-0t64:arm64 (2.82.2-3) over (2.82.1-0ubuntu1) ...
178s Preparing to unpack .../04-libgirepository-1.0-1_1.82.0-2_arm64.deb ...
178s Unpacking libgirepository-1.0-1:arm64 (1.82.0-2) over (1.80.1-4) ...
178s Preparing to unpack .../05-libglib2.0-data_2.82.2-3_all.deb ...
178s Unpacking libglib2.0-data (2.82.2-3) over (2.82.1-0ubuntu1) ...
178s Preparing to unpack .../06-python3-dbus_1.3.2-5build4_arm64.deb ...
178s Unpacking python3-dbus (1.3.2-5build4) over (1.3.2-5build3) ...
178s Preparing to unpack .../07-python3-gi_3.50.0-3build1_arm64.deb ...
178s Unpacking python3-gi (3.50.0-3build1) over (3.50.0-3) ...
178s Preparing to unpack .../08-python3-yaml_6.0.2-1build1_arm64.deb ...
178s Unpacking python3-yaml (6.0.2-1build1) over (6.0.2-1) ...
178s Preparing to unpack .../09-vim-tiny_2%3a9.1.0861-1ubuntu1_arm64.deb ...
178s Unpacking vim-tiny (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ...
178s Preparing to unpack .../10-vim-common_2%3a9.1.0861-1ubuntu1_all.deb ...
178s Unpacking vim-common (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ...
178s Preparing to unpack .../11-xxd_2%3a9.1.0861-1ubuntu1_arm64.deb ...
178s Unpacking xxd (2:9.1.0861-1ubuntu1) over (2:9.1.0777-1ubuntu1) ...
178s Preparing to unpack .../12-libplymouth5_24.004.60-2ubuntu3_arm64.deb ...
178s Unpacking libplymouth5:arm64 (24.004.60-2ubuntu3) over (24.004.60-1ubuntu11) ...
179s Preparing to unpack .../13-plymouth-theme-ubuntu-text_24.004.60-2ubuntu3_arm64.deb ...
179s Unpacking plymouth-theme-ubuntu-text (24.004.60-2ubuntu3) over (24.004.60-1ubuntu11) ...
179s Preparing to unpack .../14-plymouth_24.004.60-2ubuntu3_arm64.deb ...
179s Unpacking plymouth (24.004.60-2ubuntu3) over (24.004.60-1ubuntu11) ...
179s Preparing to unpack .../15-bpftrace_0.21.2-2ubuntu3_arm64.deb ...
179s Unpacking bpftrace (0.21.2-2ubuntu3) over (0.21.2-2ubuntu2) ...
179s Preparing to unpack .../16-curl_8.9.1-2ubuntu3_arm64.deb ...
179s Unpacking curl (8.9.1-2ubuntu3) over (8.9.1-2ubuntu2) ...
179s Preparing to unpack .../17-libcurl4t64_8.9.1-2ubuntu3_arm64.deb ...
179s Unpacking libcurl4t64:arm64 (8.9.1-2ubuntu3) over (8.9.1-2ubuntu2) ...
179s Preparing to unpack .../18-fwupd-signed_1.55+1.7-1_arm64.deb ...
179s Unpacking fwupd-signed (1.55+1.7-1) over (1.54+1.6-1build1) ...
179s Preparing to unpack .../19-libcurl3t64-gnutls_8.9.1-2ubuntu3_arm64.deb ...
179s Unpacking libcurl3t64-gnutls:arm64 (8.9.1-2ubuntu3) over (8.9.1-2ubuntu2) ...
179s Selecting previously unselected package libsgutils2-1.48:arm64.
179s Preparing to unpack .../20-libsgutils2-1.48_1.48-0ubuntu1_arm64.deb ...
179s Unpacking libsgutils2-1.48:arm64 (1.48-0ubuntu1) ...
179s Preparing to unpack .../21-linux-base_4.10.1ubuntu1_all.deb ...
179s Unpacking linux-base (4.10.1ubuntu1) over (4.5ubuntu9) ...
179s Preparing to unpack .../22-lxd-installer_10_all.deb ...
179s Unpacking lxd-installer (10) over (9) ...
179s Preparing to unpack .../23-python3-blinker_1.9.0-1_all.deb ...
179s Unpacking python3-blinker (1.9.0-1) over (1.8.2-1) ...
179s Preparing to unpack .../24-python3-rpds-py_0.21.0-2ubuntu1_arm64.deb ...
179s Unpacking python3-rpds-py (0.21.0-2ubuntu1) over (0.20.0-0ubuntu3) ...
179s Preparing to unpack .../25-python3-jsonschema-specifications_2023.12.1-2_all.deb ...
180s Unpacking python3-jsonschema-specifications (2023.12.1-2) over (2023.12.1-1ubuntu1) ...
180s Preparing to unpack .../26-sg3-utils_1.48-0ubuntu1_arm64.deb ...
180s Unpacking sg3-utils (1.48-0ubuntu1) over (1.46-3ubuntu5) ...
180s Preparing to unpack .../27-sg3-utils-udev_1.48-0ubuntu1_all.deb ...
180s Unpacking sg3-utils-udev (1.48-0ubuntu1) over (1.46-3ubuntu5) ...
180s Setting up distro-info (1.12) ...
180s Setting up linux-base (4.10.1ubuntu1) ...
180s Setting up libcurl4t64:arm64 (8.9.1-2ubuntu3) ...
180s Setting up bpftrace (0.21.2-2ubuntu3) ...
180s Setting up openssh-client (1:9.9p1-3ubuntu2) ...
180s Setting up libcurl3t64-gnutls:arm64 (8.9.1-2ubuntu3) ...
180s Setting up fwupd-signed (1.55+1.7-1) ...
180s Setting up libsgutils2-1.48:arm64 (1.48-0ubuntu1) ...
180s Setting up debconf-i18n (1.5.87ubuntu1) ...
180s Setting up xxd (2:9.1.0861-1ubuntu1) ...
180s Setting up libglib2.0-0t64:arm64 (2.82.2-3) ...
180s No schema files found: doing nothing.
180s Setting up libglib2.0-data (2.82.2-3) ...
180s Setting up vim-common (2:9.1.0861-1ubuntu1) ...
180s Setting up gir1.2-glib-2.0:arm64 (2.82.2-3) ...
180s Setting up lxd-installer (10) ...
181s Setting up libplymouth5:arm64 (24.004.60-2ubuntu3) ...
181s Setting up libgirepository-1.0-1:arm64 (1.82.0-2) ...
181s Setting up curl (8.9.1-2ubuntu3) ...
181s Setting up libpython3-stdlib:arm64 (3.12.7-1) ...
181s Setting up sg3-utils (1.48-0ubuntu1) ...
181s Setting up openssh-sftp-server (1:9.9p1-3ubuntu2) ...
181s Setting up openssh-server (1:9.9p1-3ubuntu2) ...
181s Installing new version of config file /etc/ssh/moduli ...
181s Replacing config file /etc/ssh/sshd_config with new version
182s Setting up plymouth (24.004.60-2ubuntu3) ...
182s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic
182s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
203s flash-kernel: deferring update (trigger activated)
203s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
204s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
204s Setting up python3 (3.12.7-1) ...
204s Setting up vim-tiny (2:9.1.0861-1ubuntu1) ...
204s Setting up sg3-utils-udev (1.48-0ubuntu1) ...
205s update-initramfs: deferring update (trigger activated)
205s Setting up plymouth-theme-ubuntu-text (24.004.60-2ubuntu3) ...
205s update-initramfs: deferring update (trigger activated)
205s Setting up gir1.2-girepository-2.0:arm64 (1.82.0-2) ...
205s Setting up python3-gi (3.50.0-3build1) ...
205s Setting up python3-rpds-py (0.21.0-2ubuntu1) ...
205s Setting up python3-jsonschema-specifications (2023.12.1-2) ...
205s Setting up python3-blinker (1.9.0-1) ...
205s Setting up python3-dbus (1.3.2-5build4) ...
205s Setting up python3-debconf (1.5.87ubuntu1) ...
206s Setting up python3-yaml (6.0.2-1build1) ...
206s Processing triggers for man-db (2.13.0-1) ...
208s Processing triggers for debianutils (5.21) ...
208s Processing triggers for install-info (7.1.1-1) ...
208s Processing triggers for initramfs-tools (0.142ubuntu35) ...
208s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic
208s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
227s System running in EFI mode, skipping.
227s Processing triggers for libc-bin (2.40-1ubuntu3) ...
227s Processing triggers for ufw (0.36.2-8) ...
227s Processing triggers for flash-kernel (3.107ubuntu13) ...
228s System running in EFI mode, skipping.
228s Reading package lists...
228s Building dependency tree...
228s Reading state information...
229s The following packages will be REMOVED:
229s   libsgutils2-1.46-2*
229s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
229s After this operation, 314 kB disk space will be freed.
229s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80037 files and directories currently installed.)
229s Removing libsgutils2-1.46-2:arm64 (1.46-3ubuntu5) ...
229s Processing triggers for libc-bin (2.40-1ubuntu3) ...
230s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
230s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
230s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
230s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
231s Reading package lists...
231s Reading package lists...
231s Building dependency tree...
231s Reading state information...
232s Calculating upgrade...
232s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
232s Reading package lists...
233s Building dependency tree...
233s Reading state information...
233s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
234s autopkgtest [20:34:21]: rebooting testbed after setup commands that affected boot
237s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
260s autopkgtest [20:34:47]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024
263s autopkgtest [20:34:50]: @@@@@@@@@@@@@@@@@@@@ apt-source zarr
265s Get:1 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-1 (dsc) [2647 B]
265s Get:2 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-1 (tar) [984 kB]
265s Get:3 http://ftpmaster.internal/ubuntu plucky/universe zarr 2.18.3+ds-1 (diff) [5696 B]
265s gpgv: Signature made Sat Sep  7 10:28:17 2024 UTC
265s gpgv:                using RSA key 3B70F209A5FFD68903C472C5EBF48AB2578F9812
265s gpgv:                issuer "antonio.valentino@tiscali.it"
265s gpgv: Can't check signature: No public key
265s dpkg-source: warning: cannot verify inline signature for ./zarr_2.18.3+ds-1.dsc: no acceptable signature found
266s autopkgtest [20:34:53]: testing package zarr version 2.18.3+ds-1
266s autopkgtest [20:34:53]: build not needed
267s autopkgtest [20:34:54]: test pybuild-autopkgtest: preparing testbed
276s Reading package lists...
276s Building dependency tree...
276s Reading state information...
276s Starting pkgProblemResolver with broken count: 0
276s Starting 2 pkgProblemResolver with broken count: 0
276s Done
277s The following additional packages will be installed:
277s   autoconf automake autopoint autotools-dev build-essential cpp cpp-14
277s   cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper debugedit
277s   dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz g++
277s   g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
277s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian
277s   libaec0 libarchive-zip-perl libasan8 libblas3 libblosc1 libcc1-0
277s   libdebhelper-perl libfile-stripnondeterminism-perl libgcc-14-dev
277s   libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libisl23
277s   libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libjson-perl
277s   liblapack3 liblsan0 liblzf1 libmpc3 libpython3.13-minimal
277s   libpython3.13-stdlib libsnappy1v5 libstdc++-14-dev libsz2 libtool libtsan2
277s   libubsan1 m4 po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject
277s   python3-alabaster python3-all python3-asciitree python3-bs4 python3-build
277s   python3-defusedxml python3-docutils python3-fasteners python3-fsspec
277s   python3-h5py python3-h5py-serial python3-imagesize python3-iniconfig
277s   python3-installer python3-monotonic python3-msgpack python3-numcodecs
277s   python3-numpy python3-numpydoc python3-packaging python3-pluggy
277s   python3-pydata-sphinx-theme python3-pyproject-hooks python3-pytest
277s   python3-pytest-doctestplus python3-pytest-timeout python3-roman
277s   python3-setuptools-scm python3-snowballstemmer python3-soupsieve
277s   python3-sphinx python3-sphinx-automodapi python3-sphinx-copybutton
277s   python3-sphinx-design python3-sphinx-issues python3-tabulate python3-toml
277s   python3-wheel python3-zarr python3.13 python3.13-minimal sgml-base
277s   sphinx-common xml-core
277s Suggested packages:
277s   autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
277s   cpp-14-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex bison gdb
277s   gcc-doc gdb-aarch64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev
277s   libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
277s   libmail-box-perl python3-pip python3-venv python-build-doc docutils-doc
277s   fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french
277s   texlive-latex-base texlive-latex-recommended python-fsspec-doc
277s   python-h5py-doc python-installer-doc www-browser gfortran python-numpy-doc
277s   python3-dev python3-stemmer dvipng dvisvgm fonts-freefont-otf
277s   imagemagick-6.q16 latexmk libjs-mathjax python3-sphinx-rtd-theme sphinx-doc
277s   tex-gyre texlive-fonts-extra texlive-fonts-recommended texlive-latex-extra
277s   texlive-plain-generic python-sphinx-copybutton-doc jupyter-notebook
277s   python3.13-venv python3.13-doc binfmt-support sgml-base-doc
277s Recommended packages:
277s   libarchive-cpio-perl javascript-common libjson-xs-perl libltdl-dev
277s   libmail-sendmail-perl python3-lxml libpaper-utils python3-pil git
277s   python3-dask python3-distributed python3-dropbox python3-fusepy
277s   python3-libarchive-c python3-paramiko python3-pygit2 python3-zfpy
277s   python3-accessible-pygments python3-pytest-remotedata graphviz
277s The following NEW packages will be installed:
277s   autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential
277s   cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper
277s   debugedit dh-autoreconf dh-python dh-strip-nondeterminism docutils-common
277s   dwz g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
277s   gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext intltool-debian
277s   libaec0 libarchive-zip-perl libasan8 libblas3 libblosc1 libcc1-0
277s   libdebhelper-perl libfile-stripnondeterminism-perl libgcc-14-dev
277s   libgfortran5 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwasan0 libisl23
277s   libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libjson-perl
277s   liblapack3 liblsan0 liblzf1 libmpc3 libpython3.13-minimal
277s   libpython3.13-stdlib libsnappy1v5 libstdc++-14-dev libsz2 libtool libtsan2
277s   libubsan1 m4 po-debconf pybuild-plugin-autopkgtest pybuild-plugin-pyproject
277s   python3-alabaster python3-all python3-asciitree python3-bs4 python3-build
277s   python3-defusedxml python3-docutils python3-fasteners python3-fsspec
277s   python3-h5py python3-h5py-serial python3-imagesize python3-iniconfig
277s   python3-installer python3-monotonic python3-msgpack python3-numcodecs
277s   python3-numpy python3-numpydoc python3-packaging python3-pluggy
277s   python3-pydata-sphinx-theme python3-pyproject-hooks python3-pytest
277s   python3-pytest-doctestplus python3-pytest-timeout python3-roman
277s   python3-setuptools-scm python3-snowballstemmer python3-soupsieve
277s   python3-sphinx python3-sphinx-automodapi python3-sphinx-copybutton
277s   python3-sphinx-design python3-sphinx-issues python3-tabulate python3-toml
277s   python3-wheel python3-zarr python3.13 python3.13-minimal sgml-base
277s   sphinx-common xml-core
277s 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded.
277s Need to get 85.4 MB/85.4 MB of archives.
277s After this operation, 335 MB of additional disk space will be used.
277s Get:1 /tmp/autopkgtest.V9c0Ct/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [932 B]
277s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB]
278s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB]
278s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 sgml-base all 1.31 [11.4 kB]
278s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB]
278s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB]
278s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB]
278s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
278s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB]
278s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB]
278s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB]
278s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB]
279s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B]
279s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B]
279s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB]
279s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB]
279s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB]
279s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB]
279s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB]
279s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB]
279s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB]
279s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB]
279s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB]
279s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB]
279s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB]
280s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB]
280s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B]
280s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B]
280s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB]
280s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB]
281s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB]
281s Get:32 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B]
281s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B]
281s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
281s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB]
281s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-8 [166 kB]
281s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB]
281s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB]
281s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
281s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B]
281s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB]
281s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB]
281s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB]
281s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
281s Get:45 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB]
281s Get:46 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB]
281s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB]
281s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 xml-core all 0.19 [20.3 kB]
281s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 docutils-common all 0.21.2+dfsg-2 [131 kB]
281s Get:50 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB]
281s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB]
281s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 libsnappy1v5 arm64 1.2.1-1 [30.4 kB]
281s Get:53 http://ftpmaster.internal/ubuntu plucky/universe arm64 libblosc1 arm64 1.21.5+ds-1build1 [25.7 kB]
281s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB]
281s Get:55 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B]
281s Get:56 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB]
281s Get:57 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB]
281s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
281s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
281s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB]
281s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libjson-perl all 4.10000-1 [81.9 kB]
281s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB]
281s Get:63 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B]
281s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB]
281s Get:65 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B]
281s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB]
281s Get:67 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
281s Get:68 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-toml all 0.10.2-1 [16.5 kB]
281s Get:69 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-wheel all 0.45.0-1 [57.7 kB]
281s Get:70 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-build all 1.2.2-1 [31.0 kB]
281s Get:71 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
281s Get:72 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-pyproject all 6.20241024 [1728 B]
281s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB]
281s Get:74 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B]
281s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-asciitree all 0.3.3-4 [5644 B]
281s Get:76 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-soupsieve all 2.6-1 [33.0 kB]
281s Get:77 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-bs4 all 4.12.3-3 [109 kB]
281s Get:78 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-defusedxml all 0.7.1-2 [42.0 kB]
281s Get:79 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-roman all 4.2-1 [10.0 kB]
281s Get:80 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-docutils all 0.21.2+dfsg-2 [409 kB]
281s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-monotonic all 1.6-2 [5732 B]
281s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-fasteners all 0.18-2 [12.5 kB]
281s Get:83 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-fsspec all 2024.9.0-1 [207 kB]
281s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB]
281s Get:85 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py-serial arm64 3.11.0-5ubuntu1 [1064 kB]
282s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-h5py all 3.11.0-5ubuntu1 [7974 B]
282s Get:87 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-imagesize all 1.4.1-1 [6844 B]
282s Get:88 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B]
282s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-msgpack arm64 1.0.3-3build3 [106 kB]
282s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 sphinx-common all 7.4.7-4 [775 kB]
282s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-alabaster all 0.7.16-0.1 [18.5 kB]
282s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB]
282s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sphinx all 7.4.7-4 [593 kB]
282s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pydata-sphinx-theme all 0.15.4+dfsg-2 [41.5 kB]
282s Get:95 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-numcodecs arm64 0.14.1+ds-1 [494 kB]
282s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tabulate all 0.9.0-1 [45.3 kB]
282s Get:97 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-numpydoc all 1.6.0-2 [50.5 kB]
282s Get:98 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB]
282s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB]
282s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-doctestplus all 1.2.1-2 [23.5 kB]
282s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest-timeout all 2.3.1-1 [22.1 kB]
282s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-setuptools-scm all 8.1.0-1 [32.2 kB]
282s Get:103 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-automodapi all 0.18.0-1 [37.6 kB]
282s Get:104 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-copybutton all 0.5.2-2 [16.6 kB]
282s Get:105 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-design all 0.6.1-1 [894 kB]
282s Get:106 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-sphinx-issues all 5.0.0-1 [10.2 kB]
282s Get:107 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-zarr all 2.18.3+ds-1 [410 kB]
283s Fetched 85.4 MB in 5s (17.0 MB/s)
283s Selecting previously unselected package libpython3.13-minimal:arm64.
283s (Reading database ... 
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283s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_arm64.deb ...
283s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ...
283s Selecting previously unselected package python3.13-minimal.
283s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_arm64.deb ...
283s Unpacking python3.13-minimal (3.13.0-2) ...
283s Selecting previously unselected package sgml-base.
283s Preparing to unpack .../002-sgml-base_1.31_all.deb ...
283s Unpacking sgml-base (1.31) ...
283s Selecting previously unselected package m4.
283s Preparing to unpack .../003-m4_1.4.19-4build1_arm64.deb ...
283s Unpacking m4 (1.4.19-4build1) ...
283s Selecting previously unselected package autoconf.
283s Preparing to unpack .../004-autoconf_2.72-3_all.deb ...
283s Unpacking autoconf (2.72-3) ...
283s Selecting previously unselected package autotools-dev.
283s Preparing to unpack .../005-autotools-dev_20220109.1_all.deb ...
283s Unpacking autotools-dev (20220109.1) ...
283s Selecting previously unselected package automake.
283s Preparing to unpack .../006-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
283s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
283s Selecting previously unselected package autopoint.
283s Preparing to unpack .../007-autopoint_0.22.5-2_all.deb ...
283s Unpacking autopoint (0.22.5-2) ...
283s Selecting previously unselected package libisl23:arm64.
283s Preparing to unpack .../008-libisl23_0.27-1_arm64.deb ...
283s Unpacking libisl23:arm64 (0.27-1) ...
283s Selecting previously unselected package libmpc3:arm64.
283s Preparing to unpack .../009-libmpc3_1.3.1-1build2_arm64.deb ...
283s Unpacking libmpc3:arm64 (1.3.1-1build2) ...
283s Selecting previously unselected package cpp-14-aarch64-linux-gnu.
283s Preparing to unpack .../010-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ...
283s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
284s Selecting previously unselected package cpp-14.
284s Preparing to unpack .../011-cpp-14_14.2.0-8ubuntu1_arm64.deb ...
284s Unpacking cpp-14 (14.2.0-8ubuntu1) ...
284s Selecting previously unselected package cpp-aarch64-linux-gnu.
284s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
284s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
284s Selecting previously unselected package cpp.
284s Preparing to unpack .../013-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ...
284s Unpacking cpp (4:14.1.0-2ubuntu1) ...
284s Selecting previously unselected package libcc1-0:arm64.
284s Preparing to unpack .../014-libcc1-0_14.2.0-8ubuntu1_arm64.deb ...
284s Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ...
284s Selecting previously unselected package libgomp1:arm64.
284s Preparing to unpack .../015-libgomp1_14.2.0-8ubuntu1_arm64.deb ...
284s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ...
284s Selecting previously unselected package libitm1:arm64.
284s Preparing to unpack .../016-libitm1_14.2.0-8ubuntu1_arm64.deb ...
284s Unpacking libitm1:arm64 (14.2.0-8ubuntu1) ...
284s Selecting previously unselected package libasan8:arm64.
284s Preparing to unpack .../017-libasan8_14.2.0-8ubuntu1_arm64.deb ...
284s Unpacking libasan8:arm64 (14.2.0-8ubuntu1) ...
284s Selecting previously unselected package liblsan0:arm64.
284s Preparing to unpack .../018-liblsan0_14.2.0-8ubuntu1_arm64.deb ...
284s Unpacking liblsan0:arm64 (14.2.0-8ubuntu1) ...
284s Selecting previously unselected package libtsan2:arm64.
284s Preparing to unpack .../019-libtsan2_14.2.0-8ubuntu1_arm64.deb ...
284s Unpacking libtsan2:arm64 (14.2.0-8ubuntu1) ...
284s Selecting previously unselected package libubsan1:arm64.
284s Preparing to unpack .../020-libubsan1_14.2.0-8ubuntu1_arm64.deb ...
284s Unpacking libubsan1:arm64 (14.2.0-8ubuntu1) ...
284s Selecting previously unselected package libhwasan0:arm64.
284s Preparing to unpack .../021-libhwasan0_14.2.0-8ubuntu1_arm64.deb ...
284s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ...
284s Selecting previously unselected package libgcc-14-dev:arm64.
284s Preparing to unpack .../022-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ...
284s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ...
284s Selecting previously unselected package gcc-14-aarch64-linux-gnu.
284s Preparing to unpack .../023-gcc-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ...
284s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
285s Selecting previously unselected package gcc-14.
285s Preparing to unpack .../024-gcc-14_14.2.0-8ubuntu1_arm64.deb ...
285s Unpacking gcc-14 (14.2.0-8ubuntu1) ...
285s Selecting previously unselected package gcc-aarch64-linux-gnu.
285s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
285s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
285s Selecting previously unselected package gcc.
285s Preparing to unpack .../026-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ...
285s Unpacking gcc (4:14.1.0-2ubuntu1) ...
285s Selecting previously unselected package libstdc++-14-dev:arm64.
285s Preparing to unpack .../027-libstdc++-14-dev_14.2.0-8ubuntu1_arm64.deb ...
285s Unpacking libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ...
285s Selecting previously unselected package g++-14-aarch64-linux-gnu.
285s Preparing to unpack .../028-g++-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ...
285s Unpacking g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
285s Selecting previously unselected package g++-14.
285s Preparing to unpack .../029-g++-14_14.2.0-8ubuntu1_arm64.deb ...
285s Unpacking g++-14 (14.2.0-8ubuntu1) ...
285s Selecting previously unselected package g++-aarch64-linux-gnu.
285s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ...
285s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
285s Selecting previously unselected package g++.
285s Preparing to unpack .../031-g++_4%3a14.1.0-2ubuntu1_arm64.deb ...
285s Unpacking g++ (4:14.1.0-2ubuntu1) ...
285s Selecting previously unselected package build-essential.
285s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ...
285s Unpacking build-essential (12.10ubuntu1) ...
285s Selecting previously unselected package libdebhelper-perl.
285s Preparing to unpack .../033-libdebhelper-perl_13.20ubuntu1_all.deb ...
285s Unpacking libdebhelper-perl (13.20ubuntu1) ...
285s Selecting previously unselected package libtool.
285s Preparing to unpack .../034-libtool_2.4.7-8_all.deb ...
285s Unpacking libtool (2.4.7-8) ...
286s Selecting previously unselected package dh-autoreconf.
286s Preparing to unpack .../035-dh-autoreconf_20_all.deb ...
286s Unpacking dh-autoreconf (20) ...
286s Selecting previously unselected package libarchive-zip-perl.
286s Preparing to unpack .../036-libarchive-zip-perl_1.68-1_all.deb ...
286s Unpacking libarchive-zip-perl (1.68-1) ...
286s Selecting previously unselected package libfile-stripnondeterminism-perl.
286s Preparing to unpack .../037-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
286s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
286s Selecting previously unselected package dh-strip-nondeterminism.
286s Preparing to unpack .../038-dh-strip-nondeterminism_1.14.0-1_all.deb ...
286s Unpacking dh-strip-nondeterminism (1.14.0-1) ...
286s Selecting previously unselected package debugedit.
286s Preparing to unpack .../039-debugedit_1%3a5.1-1_arm64.deb ...
286s Unpacking debugedit (1:5.1-1) ...
286s Selecting previously unselected package dwz.
286s Preparing to unpack .../040-dwz_0.15-1build6_arm64.deb ...
286s Unpacking dwz (0.15-1build6) ...
286s Selecting previously unselected package gettext.
286s Preparing to unpack .../041-gettext_0.22.5-2_arm64.deb ...
286s Unpacking gettext (0.22.5-2) ...
286s Selecting previously unselected package intltool-debian.
286s Preparing to unpack .../042-intltool-debian_0.35.0+20060710.6_all.deb ...
286s Unpacking intltool-debian (0.35.0+20060710.6) ...
286s Selecting previously unselected package po-debconf.
286s Preparing to unpack .../043-po-debconf_1.0.21+nmu1_all.deb ...
286s Unpacking po-debconf (1.0.21+nmu1) ...
286s Selecting previously unselected package debhelper.
286s Preparing to unpack .../044-debhelper_13.20ubuntu1_all.deb ...
286s Unpacking debhelper (13.20ubuntu1) ...
286s Selecting previously unselected package dh-python.
286s Preparing to unpack .../045-dh-python_6.20241024_all.deb ...
286s Unpacking dh-python (6.20241024) ...
286s Selecting previously unselected package xml-core.
286s Preparing to unpack .../046-xml-core_0.19_all.deb ...
286s Unpacking xml-core (0.19) ...
286s Selecting previously unselected package docutils-common.
286s Preparing to unpack .../047-docutils-common_0.21.2+dfsg-2_all.deb ...
286s Unpacking docutils-common (0.21.2+dfsg-2) ...
286s Selecting previously unselected package libaec0:arm64.
286s Preparing to unpack .../048-libaec0_1.1.3-1_arm64.deb ...
286s Unpacking libaec0:arm64 (1.1.3-1) ...
286s Selecting previously unselected package libblas3:arm64.
286s Preparing to unpack .../049-libblas3_3.12.0-3build2_arm64.deb ...
286s Unpacking libblas3:arm64 (3.12.0-3build2) ...
286s Selecting previously unselected package libsnappy1v5:arm64.
286s Preparing to unpack .../050-libsnappy1v5_1.2.1-1_arm64.deb ...
286s Unpacking libsnappy1v5:arm64 (1.2.1-1) ...
286s Selecting previously unselected package libblosc1:arm64.
286s Preparing to unpack .../051-libblosc1_1.21.5+ds-1build1_arm64.deb ...
286s Unpacking libblosc1:arm64 (1.21.5+ds-1build1) ...
286s Selecting previously unselected package libgfortran5:arm64.
286s Preparing to unpack .../052-libgfortran5_14.2.0-8ubuntu1_arm64.deb ...
286s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ...
286s Selecting previously unselected package libsz2:arm64.
286s Preparing to unpack .../053-libsz2_1.1.3-1_arm64.deb ...
286s Unpacking libsz2:arm64 (1.1.3-1) ...
286s Selecting previously unselected package libhdf5-103-1t64:arm64.
286s Preparing to unpack .../054-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ...
286s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
286s Selecting previously unselected package libhdf5-hl-100t64:arm64.
286s Preparing to unpack .../055-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ...
286s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
287s Selecting previously unselected package libjs-jquery.
287s Preparing to unpack .../056-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
287s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
287s Selecting previously unselected package libjs-underscore.
287s Preparing to unpack .../057-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
287s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
287s Selecting previously unselected package libjs-sphinxdoc.
287s Preparing to unpack .../058-libjs-sphinxdoc_7.4.7-4_all.deb ...
287s Unpacking libjs-sphinxdoc (7.4.7-4) ...
287s Selecting previously unselected package libjson-perl.
287s Preparing to unpack .../059-libjson-perl_4.10000-1_all.deb ...
287s Unpacking libjson-perl (4.10000-1) ...
287s Selecting previously unselected package liblapack3:arm64.
287s Preparing to unpack .../060-liblapack3_3.12.0-3build2_arm64.deb ...
287s Unpacking liblapack3:arm64 (3.12.0-3build2) ...
287s Selecting previously unselected package liblzf1:arm64.
287s Preparing to unpack .../061-liblzf1_3.6-4_arm64.deb ...
287s Unpacking liblzf1:arm64 (3.6-4) ...
287s Selecting previously unselected package libpython3.13-stdlib:arm64.
287s Preparing to unpack .../062-libpython3.13-stdlib_3.13.0-2_arm64.deb ...
287s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ...
287s Selecting previously unselected package pybuild-plugin-autopkgtest.
287s Preparing to unpack .../063-pybuild-plugin-autopkgtest_6.20241024_all.deb ...
287s Unpacking pybuild-plugin-autopkgtest (6.20241024) ...
287s Selecting previously unselected package python3-packaging.
287s Preparing to unpack .../064-python3-packaging_24.2-1_all.deb ...
287s Unpacking python3-packaging (24.2-1) ...
287s Selecting previously unselected package python3-pyproject-hooks.
287s Preparing to unpack .../065-python3-pyproject-hooks_1.2.0-1_all.deb ...
287s Unpacking python3-pyproject-hooks (1.2.0-1) ...
287s Selecting previously unselected package python3-toml.
287s Preparing to unpack .../066-python3-toml_0.10.2-1_all.deb ...
287s Unpacking python3-toml (0.10.2-1) ...
287s Selecting previously unselected package python3-wheel.
287s Preparing to unpack .../067-python3-wheel_0.45.0-1_all.deb ...
287s Unpacking python3-wheel (0.45.0-1) ...
287s Selecting previously unselected package python3-build.
287s Preparing to unpack .../068-python3-build_1.2.2-1_all.deb ...
287s Unpacking python3-build (1.2.2-1) ...
287s Selecting previously unselected package python3-installer.
287s Preparing to unpack .../069-python3-installer_0.7.0+dfsg1-3_all.deb ...
287s Unpacking python3-installer (0.7.0+dfsg1-3) ...
287s Selecting previously unselected package pybuild-plugin-pyproject.
287s Preparing to unpack .../070-pybuild-plugin-pyproject_6.20241024_all.deb ...
287s Unpacking pybuild-plugin-pyproject (6.20241024) ...
287s Selecting previously unselected package python3.13.
287s Preparing to unpack .../071-python3.13_3.13.0-2_arm64.deb ...
287s Unpacking python3.13 (3.13.0-2) ...
287s Selecting previously unselected package python3-all.
287s Preparing to unpack .../072-python3-all_3.12.7-1_arm64.deb ...
287s Unpacking python3-all (3.12.7-1) ...
287s Selecting previously unselected package python3-asciitree.
287s Preparing to unpack .../073-python3-asciitree_0.3.3-4_all.deb ...
287s Unpacking python3-asciitree (0.3.3-4) ...
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288s Selecting previously unselected package python3-monotonic.
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288s Selecting previously unselected package python3-numpy.
288s Preparing to unpack .../082-python3-numpy_1%3a1.26.4+ds-11ubuntu1_arm64.deb ...
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288s Preparing to unpack .../085-python3-imagesize_1.4.1-1_all.deb ...
288s Unpacking python3-imagesize (1.4.1-1) ...
288s Selecting previously unselected package python3-iniconfig.
288s Preparing to unpack .../086-python3-iniconfig_1.1.1-2_all.deb ...
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288s Selecting previously unselected package python3-msgpack.
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288s Selecting previously unselected package sphinx-common.
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288s Unpacking sphinx-common (7.4.7-4) ...
288s Selecting previously unselected package python3-alabaster.
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289s Setting up dh-python (6.20241024) ...
289s Setting up python3-iniconfig (1.1.1-2) ...
290s Setting up python3-defusedxml (0.7.1-2) ...
290s Setting up libarchive-zip-perl (1.68-1) ...
290s Setting up python3-alabaster (0.7.16-0.1) ...
290s Setting up libdebhelper-perl (13.20ubuntu1) ...
290s Setting up python3-fsspec (2024.9.0-1) ...
291s Setting up python3-tabulate (0.9.0-1) ...
291s Setting up m4 (1.4.19-4build1) ...
291s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ...
291s Setting up python3-wheel (0.45.0-1) ...
291s Setting up libaec0:arm64 (1.1.3-1) ...
291s Setting up libsnappy1v5:arm64 (1.2.1-1) ...
291s Setting up python3-monotonic (1.6-2) ...
291s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ...
291s Setting up python3-roman (4.2-1) ...
292s Setting up autotools-dev (20220109.1) ...
292s Setting up libblas3:arm64 (3.12.0-3build2) ...
292s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
292s Setting up python3-packaging (24.2-1) ...
292s Setting up python3-pyproject-hooks (1.2.0-1) ...
292s Setting up python3-snowballstemmer (2.2.0-4build1) ...
293s Setting up liblzf1:arm64 (3.6-4) ...
293s Setting up libmpc3:arm64 (1.3.1-1build2) ...
293s Setting up autopoint (0.22.5-2) ...
293s Setting up python3-fasteners (0.18-2) ...
293s Setting up python3-asciitree (0.3.3-4) ...
293s Setting up python3-toml (0.10.2-1) ...
293s Setting up python3-installer (0.7.0+dfsg1-3) ...
294s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ...
294s Setting up autoconf (2.72-3) ...
294s Setting up python3-pluggy (1.5.0-1) ...
294s Setting up libubsan1:arm64 (14.2.0-8ubuntu1) ...
294s Setting up dwz (0.15-1build6) ...
294s Setting up libhwasan0:arm64 (14.2.0-8ubuntu1) ...
294s Setting up libasan8:arm64 (14.2.0-8ubuntu1) ...
294s Setting up libjson-perl (4.10000-1) ...
294s Setting up libblosc1:arm64 (1.21.5+ds-1build1) ...
294s Setting up debugedit (1:5.1-1) ...
294s Setting up python3.13-minimal (3.13.0-2) ...
295s Setting up sgml-base (1.31) ...
295s Setting up python3-msgpack (1.0.3-3build3) ...
295s Setting up libtsan2:arm64 (14.2.0-8ubuntu1) ...
295s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
295s Setting up libisl23:arm64 (0.27-1) ...
295s Setting up python3-build (1.2.2-1) ...
295s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ...
295s Setting up python3-soupsieve (2.6-1) ...
295s Setting up libcc1-0:arm64 (14.2.0-8ubuntu1) ...
295s Setting up liblsan0:arm64 (14.2.0-8ubuntu1) ...
295s Setting up libsz2:arm64 (1.1.3-1) ...
295s Setting up libitm1:arm64 (14.2.0-8ubuntu1) ...
295s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
295s Setting up python3-imagesize (1.4.1-1) ...
296s Setting up automake (1:1.16.5-1.3ubuntu1) ...
296s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
296s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
296s Setting up liblapack3:arm64 (3.12.0-3build2) ...
296s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
296s Setting up gettext (0.22.5-2) ...
296s Setting up python3.13 (3.13.0-2) ...
297s Setting up pybuild-plugin-pyproject (6.20241024) ...
297s Setting up python3-pytest (8.3.3-1) ...
297s Setting up python3-all (3.12.7-1) ...
297s Setting up python3-setuptools-scm (8.1.0-1) ...
298s Setting up python3-bs4 (4.12.3-3) ...
298s Setting up intltool-debian (0.35.0+20060710.6) ...
298s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ...
302s Setting up libjs-sphinxdoc (7.4.7-4) ...
302s Setting up python3-pytest-doctestplus (1.2.1-2) ...
302s Setting up dh-strip-nondeterminism (1.14.0-1) ...
302s Setting up cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
302s Setting up xml-core (0.19) ...
302s Setting up libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ...
302s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ...
302s Setting up libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ...
302s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ...
302s Setting up python3-pytest-timeout (2.3.1-1) ...
303s Setting up po-debconf (1.0.21+nmu1) ...
303s Setting up python3-h5py-serial (3.11.0-5ubuntu1) ...
303s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
303s Setting up sphinx-common (7.4.7-4) ...
303s Setting up python3-h5py (3.11.0-5ubuntu1) ...
303s Setting up cpp-14 (14.2.0-8ubuntu1) ...
303s Setting up cpp (4:14.1.0-2ubuntu1) ...
303s Setting up gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
303s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
303s Setting up g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ...
303s Setting up gcc-14 (14.2.0-8ubuntu1) ...
303s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ...
303s Setting up g++-14 (14.2.0-8ubuntu1) ...
303s Setting up libtool (2.4.7-8) ...
303s Setting up gcc (4:14.1.0-2ubuntu1) ...
303s Setting up dh-autoreconf (20) ...
303s Setting up g++ (4:14.1.0-2ubuntu1) ...
303s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
303s Setting up build-essential (12.10ubuntu1) ...
303s Setting up debhelper (13.20ubuntu1) ...
303s Setting up pybuild-plugin-autopkgtest (6.20241024) ...
303s Processing triggers for libc-bin (2.40-1ubuntu3) ...
303s Processing triggers for systemd (256.5-2ubuntu4) ...
303s Processing triggers for man-db (2.13.0-1) ...
305s Processing triggers for install-info (7.1.1-1) ...
305s Processing triggers for sgml-base (1.31) ...
305s Setting up docutils-common (0.21.2+dfsg-2) ...
305s Processing triggers for sgml-base (1.31) ...
305s Setting up python3-docutils (0.21.2+dfsg-2) ...
306s Setting up python3-sphinx (7.4.7-4) ...
308s Setting up python3-sphinx-copybutton (0.5.2-2) ...
308s Setting up python3-sphinx-issues (5.0.0-1) ...
308s Setting up python3-sphinx-design (0.6.1-1) ...
308s Setting up python3-numpydoc (1.6.0-2) ...
309s Setting up python3-pydata-sphinx-theme (0.15.4+dfsg-2) ...
309s Setting up python3-sphinx-automodapi (0.18.0-1) ...
309s Setting up python3-numcodecs (0.14.1+ds-1) ...
309s Setting up python3-zarr (2.18.3+ds-1) ...
310s Setting up autopkgtest-satdep (0) ...
316s (Reading database ... 86861 files and directories currently installed.)
316s Removing autopkgtest-satdep (0) ...
317s autopkgtest [20:35:44]: test pybuild-autopkgtest: pybuild-autopkgtest
317s autopkgtest [20:35:44]: test pybuild-autopkgtest: [-----------------------
317s pybuild-autopkgtest
319s I: pybuild base:311: cd /tmp/autopkgtest.V9c0Ct/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_complex and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr
322s ============================= test session starts ==============================
322s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
322s rootdir: /tmp/autopkgtest.V9c0Ct/autopkgtest_tmp/build
322s configfile: pyproject.toml
322s plugins: doctestplus-1.2.1, typeguard-4.4.1, timeout-2.3.1
322s collected 5174 items / 768 deselected / 4406 selected
322s 
322s tests/test_attrs.py ..................                                   [  0%]
322s tests/test_convenience.py .....ss...................ssssssss.s.EEE.EEE.E [  1%]
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386s s..ssssss..ssssss                                                        [ 63%]
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396s ...........                                                              [ 99%]
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396s 
396s ==================================== ERRORS ====================================
396s ____________ ERROR at setup of TestCopy.test_copy_array[zarr-hdf5] _____________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df446c10>
396s request = <SubRequest 'dest' for <Function test_copy_array[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_zarr_hdf5_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ____________ ERROR at setup of TestCopy.test_copy_array[hdf5-zarr] _____________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df4d9e00>
396s request = <SubRequest 'source' for <Function test_copy_array[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_hdf5_zarr_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ____________ ERROR at setup of TestCopy.test_copy_array[hdf5-hdf5] _____________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df4d9ba0>
396s request = <SubRequest 'source' for <Function test_copy_array[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_hdf5_hdf5_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[zarr-hdf5] ___________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df457bd0>
396s request = <SubRequest 'dest' for <Function test_copy_bad_dest[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_zarr_hdf5_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[hdf5-zarr] ___________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121defe1040>
396s request = <SubRequest 'source' for <Function test_copy_bad_dest[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_hdf5_zarr_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ___________ ERROR at setup of TestCopy.test_copy_bad_dest[hdf5-hdf5] ___________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df46d650>
396s request = <SubRequest 'source' for <Function test_copy_bad_dest[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_bad_dest_hdf5_hdf5_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s __________ ERROR at setup of TestCopy.test_copy_array_name[zarr-hdf5] __________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df4659a0>
396s request = <SubRequest 'dest' for <Function test_copy_array_name[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_zarr_hdf50')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s __________ ERROR at setup of TestCopy.test_copy_array_name[hdf5-zarr] __________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df4665d0>
396s request = <SubRequest 'source' for <Function test_copy_array_name[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_hdf5_zarr0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s __________ ERROR at setup of TestCopy.test_copy_array_name[hdf5-hdf5] __________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121def366d0>
396s request = <SubRequest 'source' for <Function test_copy_array_name[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_name_hdf5_hdf50')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s _____ ERROR at setup of TestCopy.test_copy_array_create_options[zarr-hdf5] _____
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df54d640>
396s request = <SubRequest 'dest' for <Function test_copy_array_create_options[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options1')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s _____ ERROR at setup of TestCopy.test_copy_array_create_options[hdf5-zarr] _____
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df47c110>
396s request = <SubRequest 'source' for <Function test_copy_array_create_options[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options2')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s _____ ERROR at setup of TestCopy.test_copy_array_create_options[hdf5-hdf5] _____
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df47c410>
396s request = <SubRequest 'source' for <Function test_copy_array_create_options[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_create_options3')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[zarr-hdf5] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df419860>
396s request = <SubRequest 'dest' for <Function test_copy_array_exists_array[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_z1')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[hdf5-zarr] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121def8efd0>
396s request = <SubRequest 'source' for <Function test_copy_array_exists_array[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_array_exists_array[hdf5-hdf5] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121def8f1b0>
396s request = <SubRequest 'source' for <Function test_copy_array_exists_array[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_array_h1')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[zarr-hdf5] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df0c84d0>
396s request = <SubRequest 'dest' for <Function test_copy_array_exists_group[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_z1')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[hdf5-zarr] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df0ca450>
396s request = <SubRequest 'source' for <Function test_copy_array_exists_group[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_array_exists_group[hdf5-hdf5] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121defdf540>
396s request = <SubRequest 'source' for <Function test_copy_array_exists_group[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_exists_group_h1')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[zarr-hdf5] ____
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121defda270>
396s request = <SubRequest 'dest' for <Function test_copy_array_skip_initialized[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ1')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[hdf5-zarr] ____
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121defd9fd0>
396s request = <SubRequest 'source' for <Function test_copy_array_skip_initialized[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ2')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ____ ERROR at setup of TestCopy.test_copy_array_skip_initialized[hdf5-hdf5] ____
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410230>
396s request = <SubRequest 'source' for <Function test_copy_array_skip_initialized[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_array_skip_initializ3')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ____________ ERROR at setup of TestCopy.test_copy_group[zarr-hdf5] _____________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410370>
396s request = <SubRequest 'dest' for <Function test_copy_group[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_zarr_hdf5_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ____________ ERROR at setup of TestCopy.test_copy_group[hdf5-zarr] _____________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410410>
396s request = <SubRequest 'source' for <Function test_copy_group[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_hdf5_zarr_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ____________ ERROR at setup of TestCopy.test_copy_group[hdf5-hdf5] _____________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df4104b0>
396s request = <SubRequest 'source' for <Function test_copy_group[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_hdf5_hdf5_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_no_name[zarr-hdf5] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df4105f0>
396s request = <SubRequest 'dest' for <Function test_copy_group_no_name[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_zarr_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_no_name[hdf5-zarr] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410690>
396s request = <SubRequest 'source' for <Function test_copy_group_no_name[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_hdf5_z0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_no_name[hdf5-hdf5] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410730>
396s request = <SubRequest 'source' for <Function test_copy_group_no_name[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_no_name_hdf5_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_options[zarr-hdf5] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410870>
396s request = <SubRequest 'dest' for <Function test_copy_group_options[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_zarr_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_options[hdf5-zarr] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410910>
396s request = <SubRequest 'source' for <Function test_copy_group_options[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_hdf5_z0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_options[hdf5-hdf5] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df4109b0>
396s request = <SubRequest 'source' for <Function test_copy_group_options[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_options_hdf5_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_shallow[zarr-hdf5] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410af0>
396s request = <SubRequest 'dest' for <Function test_copy_group_shallow[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_zarr_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_shallow[hdf5-zarr] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410b90>
396s request = <SubRequest 'source' for <Function test_copy_group_shallow[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_hdf5_z0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_shallow[hdf5-hdf5] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410c30>
396s request = <SubRequest 'source' for <Function test_copy_group_shallow[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_shallow_hdf5_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[zarr-hdf5] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410d70>
396s request = <SubRequest 'dest' for <Function test_copy_group_exists_group[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_z1')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[hdf5-zarr] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410e10>
396s request = <SubRequest 'source' for <Function test_copy_group_exists_group[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_group_exists_group[hdf5-hdf5] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410eb0>
396s request = <SubRequest 'source' for <Function test_copy_group_exists_group[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_group_h1')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[zarr-hdf5] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df410ff0>
396s request = <SubRequest 'dest' for <Function test_copy_group_exists_array[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_z1')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[hdf5-zarr] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df411090>
396s request = <SubRequest 'source' for <Function test_copy_group_exists_array[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ______ ERROR at setup of TestCopy.test_copy_group_exists_array[hdf5-hdf5] ______
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df411130>
396s request = <SubRequest 'source' for <Function test_copy_group_exists_array[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_exists_array_h1')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[zarr-hdf5] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df411270>
396s request = <SubRequest 'dest' for <Function test_copy_group_dry_run[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_zarr_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[hdf5-zarr] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df411310>
396s request = <SubRequest 'source' for <Function test_copy_group_dry_run[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_hdf5_z0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ________ ERROR at setup of TestCopy.test_copy_group_dry_run[hdf5-hdf5] _________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df4113b0>
396s request = <SubRequest 'source' for <Function test_copy_group_dry_run[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_copy_group_dry_run_hdf5_h0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ______________ ERROR at setup of TestCopy.test_logging[zarr-hdf5] ______________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df4114a0>
396s request = <SubRequest 'dest' for <Function test_logging[zarr-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_zarr_hdf5_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def dest(self, request, tmpdir):
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:735: PytestDeprecationWarning
396s ______________ ERROR at setup of TestCopy.test_logging[hdf5-zarr] ______________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df4114f0>
396s request = <SubRequest 'source' for <Function test_logging[hdf5-zarr]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_hdf5_zarr_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s ______________ ERROR at setup of TestCopy.test_logging[hdf5-hdf5] ______________
396s 
396s self = <zarr.tests.test_convenience.TestCopy object at 0xf121df411540>
396s request = <SubRequest 'source' for <Function test_logging[hdf5-hdf5]>>
396s tmpdir = local('/tmp/pytest-of-ubuntu/pytest-0/test_logging_hdf5_hdf5_0')
396s 
396s     @pytest.fixture(params=[False, True], ids=["zarr", "hdf5"])
396s     def source(self, request, tmpdir):
396s         def prep_source(source):
396s             foo = source.create_group("foo")
396s             foo.attrs["experiment"] = "weird science"
396s             baz = foo.create_dataset("bar/baz", data=np.arange(100), chunks=(50,))
396s             baz.attrs["units"] = "metres"
396s             if request.param:
396s                 extra_kws = dict(
396s                     compression="gzip",
396s                     compression_opts=3,
396s                     fillvalue=84,
396s                     shuffle=True,
396s                     fletcher32=True,
396s                 )
396s             else:
396s                 extra_kws = dict(compressor=Zlib(3), order="F", fill_value=42, filters=[Adler32()])
396s             source.create_dataset(
396s                 "spam",
396s                 data=np.arange(100, 200).reshape(20, 5),
396s                 chunks=(10, 2),
396s                 dtype="i2",
396s                 **extra_kws,
396s             )
396s             return source
396s     
396s         if request.param:
396s >           h5py = pytest.importorskip("h5py")
396s E           pytest.PytestDeprecationWarning: 
396s E           Module 'h5py' was found, but when imported by pytest it raised:
396s E               ImportError("cannot import name '_debian_h5py_mpi' from partially initialized module 'h5py' (most likely due to a circular import) (/usr/lib/python3/dist-packages/h5py/__init__.py)")
396s E           In pytest 9.1 this warning will become an error by default.
396s E           You can fix the underlying problem, or alternatively overwrite this behavior and silence this warning by passing exc_type=ImportError explicitly.
396s E           See https://docs.pytest.org/en/stable/deprecations.html#pytest-importorskip-default-behavior-regarding-importerror
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_convenience.py:725: PytestDeprecationWarning
396s =================================== FAILURES ===================================
396s _________________________ test_array_with_delta_filter _________________________
396s 
396s     def test_array_with_delta_filter():
396s         # setup
396s         astype = "u1"
396s         dtype = "i8"
396s         filters = [Delta(astype=astype, dtype=dtype)]
396s         data = np.arange(100, dtype=dtype)
396s     
396s         for compressor in compressors:
396s >           a = array(data, chunks=10, compressor=compressor, filters=filters)
396s 
396s /usr/lib/python3/dist-packages/zarr/tests/test_filters.py:40: 
396s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
396s /usr/lib/python3/dist-packages/zarr/creation.py:444: in array
396s     z[...] = data
396s /usr/lib/python3/dist-packages/zarr/core.py:1449: in __setitem__
396s     self.set_basic_selection(pure_selection, value, fields=fields)
396s /usr/lib/python3/dist-packages/zarr/core.py:1545: in set_basic_selection
396s     return self._set_basic_selection_nd(selection, value, fields=fields)
396s /usr/lib/python3/dist-packages/zarr/core.py:1935: in _set_basic_selection_nd
396s     self._set_selection(indexer, value, fields=fields)
396s /usr/lib/python3/dist-packages/zarr/core.py:1988: in _set_selection
396s     self._chunk_setitem(chunk_coords, chunk_selection, chunk_value, fields=fields)
396s /usr/lib/python3/dist-packages/zarr/core.py:2261: in _chunk_setitem
396s     self._chunk_setitem_nosync(chunk_coords, chunk_selection, value, fields=fields)
396s /usr/lib/python3/dist-packages/zarr/core.py:2271: in _chunk_setitem_nosync
396s     self.chunk_store[ckey] = self._encode_chunk(cdata)
396s /usr/lib/python3/dist-packages/zarr/core.py:2387: in _encode_chunk
396s     chunk = f.encode(chunk)
396s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
396s 
396s self = Delta(dtype='<i8', astype='|u1')
396s buf = array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
396s 
396s     def encode(self, buf):
396s         # normalise input
396s         arr = ensure_ndarray(buf).view(self.dtype)
396s     
396s         # flatten to simplify implementation
396s         arr = arr.reshape(-1, order='A')
396s     
396s         # setup encoded output
396s         enc = np.empty_like(arr, dtype=self.astype)
396s     
396s         # set first element
396s         enc[0] = arr[0]
396s     
396s         # compute differences
396s         # using np.subtract for in-place operations
396s         if arr.dtype == bool:
396s             np.not_equal(arr[1:], arr[:-1], out=enc[1:])
396s         else:
396s >           np.subtract(arr[1:], arr[:-1], out=enc[1:])
396s E           numpy.core._exceptions._UFuncOutputCastingError: Cannot cast ufunc 'subtract' output from dtype('int64') to dtype('uint8') with casting rule 'same_kind'
396s 
396s /usr/lib/python3/dist-packages/numcodecs/delta.py:70: UFuncTypeError
396s =============================== warnings summary ===============================
396s tests/test_core.py::TestArrayWithDBMStore::test_array_1d
396s   /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <sqlite3.Connection object at 0xf121de43b6a0>
396s   
396s   Traceback (most recent call last):
396s     File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in <genexpr>
396s       chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections)
396s       
396s   ResourceWarning: unclosed database in <sqlite3.Connection object at 0xf121de43b6a0>
396s   
396s     warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
396s 
396s tests/test_core.py::TestArrayWithDBMStore::test_object_arrays_danger
396s   /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <sqlite3.Connection object at 0xf121de43b5b0>
396s   
396s   Traceback (most recent call last):
396s     File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 355, in <genexpr>
396s       chunk_coords = tuple(p.dim_chunk_ix for p in dim_projections)
396s       
396s   ResourceWarning: unclosed database in <sqlite3.Connection object at 0xf121de43b5b0>
396s   
396s     warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
396s 
396s tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d
396s   /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <sqlite3.Connection object at 0xf121de43bd30>
396s   
396s   Traceback (most recent call last):
396s     File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 356, in <genexpr>
396s       chunk_selection = tuple(p.dim_chunk_sel for p in dim_projections)
396s       
396s   ResourceWarning: unclosed database in <sqlite3.Connection object at 0xf121de43bd30>
396s   
396s     warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
396s 
396s tests/test_core.py::TestArrayWithSQLiteStore::test_object_arrays_vlen_text
396s   /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <sqlite3.Connection object at 0xf121de43af20>
396s   
396s   Traceback (most recent call last):
396s     File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 219, in __iter__
396s       dim_chunk_sel = slice(dim_chunk_sel_start, dim_chunk_sel_stop, self.step)
396s   ResourceWarning: unclosed database in <sqlite3.Connection object at 0xf121de43af20>
396s   
396s     warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
396s 
396s tests/test_core.py::TestArrayWithNoCompressor::test_array_2d
396s   /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <sqlite3.Connection object at 0xf121de8bc220>
396s   
396s   Traceback (most recent call last):
396s     File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 357, in <genexpr>
396s       out_selection = tuple(
396s       
396s   ResourceWarning: unclosed database in <sqlite3.Connection object at 0xf121de8bc220>
396s   
396s     warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
396s 
396s tests/test_core.py::TestArrayWithBZ2Compressor::test_resize_2d
396s   /usr/lib/python3/dist-packages/_pytest/unraisableexception.py:85: PytestUnraisableExceptionWarning: Exception ignored in: <sqlite3.Connection object at 0xf121de8bf3d0>
396s   
396s   Traceback (most recent call last):
396s     File "/usr/lib/python3/dist-packages/zarr/indexing.py", line 357, in <genexpr>
396s       out_selection = tuple(
396s       
396s   ResourceWarning: unclosed database in <sqlite3.Connection object at 0xf121de8bf3d0>
396s   
396s     warnings.warn(pytest.PytestUnraisableExceptionWarning(msg))
396s 
396s tests/test_filters.py::test_array_with_scaleoffset_filter
396s   /usr/lib/python3/dist-packages/numcodecs/fixedscaleoffset.py:97: RuntimeWarning: invalid value encountered in cast
396s     enc = enc.astype(self.astype, copy=False)
396s 
396s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray
396s   /usr/lib/python3.13/zipfile/__init__.py:1638: UserWarning: Duplicate name: 'foo'
396s     return self._open_to_write(zinfo, force_zip64=force_zip64)
396s 
396s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem
396s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem
396s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append
396s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append
396s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group
396s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group
396s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group
396s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group
396s   /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3039) is multi-threaded, use of fork() may lead to deadlocks in the child.
396s     self.pid = os.fork()
396s 
396s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
396s ============================= slowest 10 durations =============================
396s 9.64s call     tests/test_indexing.py::test_set_orthogonal_selection_3d
396s 1.99s call     tests/test_storage.py::test_format_compatibility
396s 1.48s call     tests/test_core.py::TestArrayWithSQLiteStore::test_islice
396s 1.42s call     tests/test_core.py::TestArrayWithSQLiteStore::test_iter
396s 1.35s call     tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont
396s 1.10s call     tests/test_indexing.py::test_set_orthogonal_selection_2d
396s 1.10s call     tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_non_cont
396s 0.97s call     tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d
396s 0.92s call     tests/test_core.py::TestArrayWithDBMStore::test_iter
396s 0.89s call     tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis
396s =========================== short test summary info ============================
396s FAILED tests/test_filters.py::test_array_with_delta_filter - numpy.core._exce...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array[zarr-hdf5] - pytes...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array[hdf5-zarr] - pytes...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array[hdf5-hdf5] - pytes...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[zarr-hdf5] - py...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[hdf5-zarr] - py...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_bad_dest[hdf5-hdf5] - py...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[zarr-hdf5] - ...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[hdf5-zarr] - ...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_name[hdf5-hdf5] - ...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[zarr-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[hdf5-zarr]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_create_options[hdf5-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[zarr-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[hdf5-zarr]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_array[hdf5-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[zarr-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[hdf5-zarr]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_exists_group[hdf5-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[zarr-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[hdf5-zarr]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_array_skip_initialized[hdf5-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group[zarr-hdf5] - pytes...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group[hdf5-zarr] - pytes...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group[hdf5-hdf5] - pytes...
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[zarr-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[hdf5-zarr]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_no_name[hdf5-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[zarr-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[hdf5-zarr]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_options[hdf5-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[zarr-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[hdf5-zarr]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_shallow[hdf5-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[zarr-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[hdf5-zarr]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_group[hdf5-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[zarr-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[hdf5-zarr]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_exists_array[hdf5-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[zarr-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[hdf5-zarr]
396s ERROR tests/test_convenience.py::TestCopy::test_copy_group_dry_run[hdf5-hdf5]
396s ERROR tests/test_convenience.py::TestCopy::test_logging[zarr-hdf5] - pytest.P...
396s ERROR tests/test_convenience.py::TestCopy::test_logging[hdf5-zarr] - pytest.P...
396s ERROR tests/test_convenience.py::TestCopy::test_logging[hdf5-hdf5] - pytest.P...
396s = 1 failed, 2205 passed, 2151 skipped, 768 deselected, 4 xfailed, 16 warnings, 45 errors in 77.07s (0:01:17) =
398s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest.V9c0Ct/autopkgtest_tmp/build; python3.13 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_complex and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr
398s I: pybuild base:311: cd /tmp/autopkgtest.V9c0Ct/autopkgtest_tmp/build; python3.12 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_complex and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr
401s ============================= test session starts ==============================
401s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
401s rootdir: /tmp/autopkgtest.V9c0Ct/autopkgtest_tmp/build
401s configfile: pyproject.toml
401s plugins: doctestplus-1.2.1, typeguard-4.4.1, timeout-2.3.1
401s collected 5174 items / 768 deselected / 4406 selected
401s 
401s tests/test_attrs.py ..................                                   [  0%]
401s tests/test_convenience.py .....ss...................ssssssss.s.......... [  1%]
402s ..................................................ssssssssssssssssssssss [  3%]
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402s ssssssssssssss                                                           [  6%]
403s tests/test_core.py ..................................................... [  7%]
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446s ssssssssssssssss......                                                   [ 57%]
446s tests/test_creation.py ................................................. [ 58%]
446s ..................................ss.....                                [ 59%]
447s tests/test_dim_separator.py ..........................x....x             [ 60%]
447s tests/test_filters.py F......                                            [ 60%]
460s tests/test_indexing.py ................................................. [ 61%]
460s ......xx......                                                           [ 61%]
460s tests/test_info.py ..                                                    [ 61%]
460s tests/test_meta.py .........................                             [ 62%]
460s tests/test_meta_array.py .sss.sss.sss.sss.sss.sss.sss.sss..ssssss..sssss [ 63%]
460s s..ssssss..ssssss                                                        [ 63%]
460s tests/test_n5.py .....                                                   [ 63%]
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463s sssssssssssssssssssssssssssssssssssssssssss                              [ 93%]
463s tests/test_sync.py ..................................................... [ 94%]
464s ........................................................................ [ 96%]
467s ........................................................................ [ 97%]
468s ........................................................................ [ 99%]
469s ...........                                                              [ 99%]
469s tests/test_util.py ..................                                    [100%]
469s 
469s =================================== FAILURES ===================================
469s _________________________ test_array_with_delta_filter _________________________
469s 
469s     def test_array_with_delta_filter():
469s         # setup
469s         astype = "u1"
469s         dtype = "i8"
469s         filters = [Delta(astype=astype, dtype=dtype)]
469s         data = np.arange(100, dtype=dtype)
469s     
469s         for compressor in compressors:
469s >           a = array(data, chunks=10, compressor=compressor, filters=filters)
469s 
469s /usr/lib/python3/dist-packages/zarr/tests/test_filters.py:40: 
469s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
469s /usr/lib/python3/dist-packages/zarr/creation.py:444: in array
469s     z[...] = data
469s /usr/lib/python3/dist-packages/zarr/core.py:1449: in __setitem__
469s     self.set_basic_selection(pure_selection, value, fields=fields)
469s /usr/lib/python3/dist-packages/zarr/core.py:1545: in set_basic_selection
469s     return self._set_basic_selection_nd(selection, value, fields=fields)
469s /usr/lib/python3/dist-packages/zarr/core.py:1935: in _set_basic_selection_nd
469s     self._set_selection(indexer, value, fields=fields)
469s /usr/lib/python3/dist-packages/zarr/core.py:1988: in _set_selection
469s     self._chunk_setitem(chunk_coords, chunk_selection, chunk_value, fields=fields)
469s /usr/lib/python3/dist-packages/zarr/core.py:2261: in _chunk_setitem
469s     self._chunk_setitem_nosync(chunk_coords, chunk_selection, value, fields=fields)
469s /usr/lib/python3/dist-packages/zarr/core.py:2271: in _chunk_setitem_nosync
469s     self.chunk_store[ckey] = self._encode_chunk(cdata)
469s /usr/lib/python3/dist-packages/zarr/core.py:2387: in _encode_chunk
469s     chunk = f.encode(chunk)
469s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
469s 
469s self = Delta(dtype='<i8', astype='|u1')
469s buf = array([0, 1, 2, 3, 4, 5, 6, 7, 8, 9])
469s 
469s     def encode(self, buf):
469s         # normalise input
469s         arr = ensure_ndarray(buf).view(self.dtype)
469s     
469s         # flatten to simplify implementation
469s         arr = arr.reshape(-1, order='A')
469s     
469s         # setup encoded output
469s         enc = np.empty_like(arr, dtype=self.astype)
469s     
469s         # set first element
469s         enc[0] = arr[0]
469s     
469s         # compute differences
469s         # using np.subtract for in-place operations
469s         if arr.dtype == bool:
469s             np.not_equal(arr[1:], arr[:-1], out=enc[1:])
469s         else:
469s >           np.subtract(arr[1:], arr[:-1], out=enc[1:])
469s E           numpy.core._exceptions._UFuncOutputCastingError: Cannot cast ufunc 'subtract' output from dtype('int64') to dtype('uint8') with casting rule 'same_kind'
469s 
469s /usr/lib/python3/dist-packages/numcodecs/delta.py:70: UFuncTypeError
469s =============================== warnings summary ===============================
469s tests/test_filters.py::test_array_with_scaleoffset_filter
469s   /usr/lib/python3/dist-packages/numcodecs/fixedscaleoffset.py:97: RuntimeWarning: invalid value encountered in cast
469s     enc = enc.astype(self.astype, copy=False)
469s 
469s tests/test_storage.py::TestZipStore::test_store_and_retrieve_ndarray
469s   /usr/lib/python3.12/zipfile/__init__.py:1607: UserWarning: Duplicate name: 'foo'
469s     return self._open_to_write(zinfo, force_zip64=force_zip64)
469s 
469s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem
469s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_setitem
469s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append
469s tests/test_sync.py::TestArrayWithProcessSynchronizer::test_parallel_append
469s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group
469s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_create_group
469s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group
469s tests/test_sync.py::TestGroupWithProcessSynchronizer::test_parallel_require_group
469s   /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=3084) is multi-threaded, use of fork() may lead to deadlocks in the child.
469s     self.pid = os.fork()
469s 
469s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
469s ============================= slowest 10 durations =============================
469s 9.88s call     tests/test_indexing.py::test_set_orthogonal_selection_3d
469s 1.33s call     tests/test_core.py::TestArrayWithFSStorePartialRead::test_non_cont
469s 1.30s call     tests/test_core.py::TestArrayWithSQLiteStore::test_islice
469s 1.27s call     tests/test_core.py::TestArrayWithSQLiteStore::test_iter
469s 1.21s call     tests/test_indexing.py::test_set_orthogonal_selection_2d
469s 1.14s call     tests/test_core.py::TestArrayWithFSStoreNestedPartialRead::test_non_cont
469s 0.94s call     tests/test_core.py::TestArrayWithSQLiteStore::test_resize_2d
469s 0.86s call     tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d
469s 0.82s call     tests/test_core.py::TestArrayWithSQLiteStore::test_append_2d_axis
469s 0.76s call     tests/test_core.py::TestArrayWithSQLiteStore::test_array_order
469s =========================== short test summary info ============================
469s FAILED tests/test_filters.py::test_array_with_delta_filter - numpy.core._exce...
469s = 1 failed, 2250 passed, 2151 skipped, 768 deselected, 4 xfailed, 10 warnings in 70.61s (0:01:10) =
470s E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest.V9c0Ct/autopkgtest_tmp/build; python3.12 -m pytest -k "not test_hierarchy and not test_utf8_encoding and not [static_flat] and not [static_nested] and not [static_flat_legacy] and not [static_nested_legacy] and not test_meta_prefix_6853 and not test_complex and not test_encode_decode_array_dtype_shape_v3" --pyargs zarr
470s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13
470s make: *** [/tmp/A9NURFzcQD/run:4: pybuild-autopkgtest] Error 25
470s pybuild-autopkgtest: error: /tmp/A9NURFzcQD/run pybuild-autopkgtest returned exit code 2
471s autopkgtest [20:38:18]: test pybuild-autopkgtest: -----------------------]
471s autopkgtest [20:38:18]: test pybuild-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
471s pybuild-autopkgtest  FAIL non-zero exit status 25
472s autopkgtest [20:38:19]: @@@@@@@@@@@@@@@@@@@@ summary
472s pybuild-autopkgtest  FAIL non-zero exit status 25
484s nova [W] Skipping flock in bos03-arm64
484s Creating nova instance adt-plucky-arm64-zarr-20241123-203027-juju-7f2275-prod-proposed-migration-environment-15-9a2d613a-537a-4251-9c48-f8bc7c77d503 from image adt/ubuntu-plucky-arm64-server-20241119.img (UUID 254dc414-4366-404b-b85c-a4e26b3194ad)...