1s autopkgtest [11:32:37]: starting date and time: 2024-11-13 11:32:37+0000 2s autopkgtest [11:32:38]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 2s autopkgtest [11:32:38]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gb3tce1j/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade xraydb --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-arm64-31.secgroup --name adt-plucky-arm64-xraydb-20241113-113231-juju-7f2275-prod-proposed-migration-environment-15-1e7cee8e-32a9-49f2-b39c-3444e2a7c6f3 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 81s autopkgtest [11:33:57]: testbed dpkg architecture: arm64 81s autopkgtest [11:33:57]: testbed apt version: 2.9.8 81s autopkgtest [11:33:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 82s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 83s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 83s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 83s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 83s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 83s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 83s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 83s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 83s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 83s Fetched 1794 kB in 1s (2066 kB/s) 83s Reading package lists... 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Calculating upgrade... 87s The following NEW packages will be installed: 87s python3.13-gdbm 87s The following packages will be upgraded: 87s libpython3-stdlib python3 python3-gdbm python3-minimal 87s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 87s Need to get 101 kB of archives. 87s After this operation, 141 kB of additional disk space will be used. 87s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 87s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 87s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 87s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 87s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 87s Fetched 101 kB in 0s (296 kB/s) 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 88s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 88s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 88s Setting up python3-minimal (3.12.7-1) ... 88s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 88s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 88s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 88s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 88s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 88s Selecting previously unselected package python3.13-gdbm. 88s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 88s Unpacking python3.13-gdbm (3.13.0-2) ... 88s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 88s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 88s Setting up python3.13-gdbm (3.13.0-2) ... 88s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 88s Setting up python3 (3.12.7-1) ... 88s Setting up python3-gdbm:arm64 (3.12.7-1) ... 88s Processing triggers for man-db (2.12.1-3) ... 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 91s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 91s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 91s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 92s Reading package lists... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s Calculating upgrade... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s autopkgtest [11:34:12]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 96s autopkgtest [11:34:12]: @@@@@@@@@@@@@@@@@@@@ apt-source xraydb 101s Get:1 http://ftpmaster.internal/ubuntu plucky/universe xraydb 4.5.3-2 (dsc) [2672 B] 101s Get:2 http://ftpmaster.internal/ubuntu plucky/universe xraydb 4.5.3-2 (tar) [12.3 MB] 101s Get:3 http://ftpmaster.internal/ubuntu plucky/universe xraydb 4.5.3-2 (diff) [4548 B] 101s gpgv: Signature made Wed Dec 20 16:47:54 2023 UTC 101s gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB 101s gpgv: issuer "picca@debian.org" 101s gpgv: Can't check signature: No public key 101s dpkg-source: warning: cannot verify inline signature for ./xraydb_4.5.3-2.dsc: no acceptable signature found 102s autopkgtest [11:34:18]: testing package xraydb version 4.5.3-2 102s autopkgtest [11:34:18]: build not needed 105s autopkgtest [11:34:21]: test testsuite: preparing testbed 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s Starting pkgProblemResolver with broken count: 0 112s Starting 2 pkgProblemResolver with broken count: 0 112s Done 112s The following additional packages will be installed: 112s libblas3 libgfortran5 liblapack3 liblbfgsb0 libpython3.13-minimal 112s libpython3.13-stdlib python3-all python3-decorator python3-greenlet 112s python3-iniconfig python3-numpy python3-packaging python3-platformdirs 112s python3-pluggy python3-pytest python3-scipy python3-sqlalchemy 112s python3-xraydb python3.13 python3.13-minimal 112s Suggested packages: 112s python-greenlet-dev python-greenlet-doc gcc gfortran python-numpy-doc 112s python3-dev python-scipy-doc python-sqlalchemy-doc python3-asyncpg 112s python3-pg8000 python3-psycopg2 python3-psycopg2cffi python3-aiosqlite 112s python3-mariadb-connector python3-mysqldb python3-mysql.connector 112s python3-pyodbc python3-pymssql python3-cx-oracle python3-oracledb 112s python-xraydb-doc python3.13-venv python3.13-doc binfmt-support 112s Recommended packages: 112s g++ | c++-compiler python3-pil python3-sqlalchemy-ext 112s The following NEW packages will be installed: 112s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 112s libpython3.13-minimal libpython3.13-stdlib python3-all python3-decorator 112s python3-greenlet python3-iniconfig python3-numpy python3-packaging 112s python3-platformdirs python3-pluggy python3-pytest python3-scipy 112s python3-sqlalchemy python3-xraydb python3.13 python3.13-minimal 112s 0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded. 112s Need to get 33.8 MB/33.8 MB of archives. 112s After this operation, 140 MB of additional disk space will be used. 112s Get:1 /tmp/autopkgtest.2IzwvY/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [720 B] 112s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 113s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 113s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 113s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 113s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 113s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 113s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 114s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 114s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 114s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 114s Get:12 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 114s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 114s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 114s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 114s Get:16 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 114s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 114s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-greenlet arm64 3.0.3-0ubuntu6 [153 kB] 114s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sqlalchemy all 2.0.32+ds1-1ubuntu1 [1206 kB] 114s Get:20 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 115s Get:21 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-xraydb all 4.5.3-2 [3461 kB] 115s Fetched 33.8 MB in 3s (11.6 MB/s) 115s Selecting previously unselected package libpython3.13-minimal:arm64. 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 116s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ... 116s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 116s Selecting previously unselected package python3.13-minimal. 116s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ... 116s Unpacking python3.13-minimal (3.13.0-2) ... 116s Selecting previously unselected package libblas3:arm64. 116s Preparing to unpack .../02-libblas3_3.12.0-3build2_arm64.deb ... 116s Unpacking libblas3:arm64 (3.12.0-3build2) ... 116s Selecting previously unselected package libgfortran5:arm64. 116s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 116s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 116s Selecting previously unselected package liblapack3:arm64. 116s Preparing to unpack .../04-liblapack3_3.12.0-3build2_arm64.deb ... 116s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 116s Selecting previously unselected package liblbfgsb0:arm64. 116s Preparing to unpack .../05-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 116s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 116s Selecting previously unselected package libpython3.13-stdlib:arm64. 116s Preparing to unpack .../06-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 116s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 116s Selecting previously unselected package python3.13. 116s Preparing to unpack .../07-python3.13_3.13.0-2_arm64.deb ... 116s Unpacking python3.13 (3.13.0-2) ... 116s Selecting previously unselected package python3-all. 116s Preparing to unpack .../08-python3-all_3.12.7-1_arm64.deb ... 116s Unpacking python3-all (3.12.7-1) ... 116s Selecting previously unselected package python3-decorator. 116s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 116s Unpacking python3-decorator (5.1.1-5) ... 116s Selecting previously unselected package python3-iniconfig. 116s Preparing to unpack .../10-python3-iniconfig_1.1.1-2_all.deb ... 116s Unpacking python3-iniconfig (1.1.1-2) ... 116s Selecting previously unselected package python3-numpy. 116s Preparing to unpack .../11-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 116s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 116s Selecting previously unselected package python3-packaging. 116s Preparing to unpack .../12-python3-packaging_24.1-1_all.deb ... 116s Unpacking python3-packaging (24.1-1) ... 116s Selecting previously unselected package python3-platformdirs. 116s Preparing to unpack .../13-python3-platformdirs_4.3.6-1_all.deb ... 116s Unpacking python3-platformdirs (4.3.6-1) ... 116s Selecting previously unselected package python3-pluggy. 116s Preparing to unpack .../14-python3-pluggy_1.5.0-1_all.deb ... 116s Unpacking python3-pluggy (1.5.0-1) ... 116s Selecting previously unselected package python3-pytest. 116s Preparing to unpack .../15-python3-pytest_8.3.3-1_all.deb ... 116s Unpacking python3-pytest (8.3.3-1) ... 116s Selecting previously unselected package python3-greenlet. 116s Preparing to unpack .../16-python3-greenlet_3.0.3-0ubuntu6_arm64.deb ... 116s Unpacking python3-greenlet (3.0.3-0ubuntu6) ... 116s Selecting previously unselected package python3-sqlalchemy. 116s Preparing to unpack .../17-python3-sqlalchemy_2.0.32+ds1-1ubuntu1_all.deb ... 116s Unpacking python3-sqlalchemy (2.0.32+ds1-1ubuntu1) ... 117s Selecting previously unselected package python3-scipy. 117s Preparing to unpack .../18-python3-scipy_1.13.1-5_arm64.deb ... 117s Unpacking python3-scipy (1.13.1-5) ... 117s Selecting previously unselected package python3-xraydb. 117s Preparing to unpack .../19-python3-xraydb_4.5.3-2_all.deb ... 117s Unpacking python3-xraydb (4.5.3-2) ... 117s Selecting previously unselected package autopkgtest-satdep. 117s Preparing to unpack .../20-1-autopkgtest-satdep.deb ... 117s Unpacking autopkgtest-satdep (0) ... 117s Setting up python3-iniconfig (1.1.1-2) ... 117s Setting up python3-platformdirs (4.3.6-1) ... 118s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 118s Setting up python3-decorator (5.1.1-5) ... 118s Setting up libblas3:arm64 (3.12.0-3build2) ... 118s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 118s Setting up python3-packaging (24.1-1) ... 118s Setting up python3-greenlet (3.0.3-0ubuntu6) ... 118s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 118s Setting up python3-pluggy (1.5.0-1) ... 118s Setting up python3.13-minimal (3.13.0-2) ... 119s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 119s Setting up liblapack3:arm64 (3.12.0-3build2) ... 119s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 119s Setting up python3.13 (3.13.0-2) ... 120s Setting up python3-pytest (8.3.3-1) ... 121s Setting up python3-all (3.12.7-1) ... 121s Setting up python3-sqlalchemy (2.0.32+ds1-1ubuntu1) ... 124s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 128s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 128s Setting up python3-scipy (1.13.1-5) ... 135s Setting up python3-xraydb (4.5.3-2) ... 135s Setting up autopkgtest-satdep (0) ... 135s Processing triggers for systemd (256.5-2ubuntu4) ... 135s Processing triggers for man-db (2.12.1-3) ... 135s Processing triggers for libc-bin (2.40-1ubuntu3) ... 138s (Reading database ... 83602 files and directories currently installed.) 138s Removing autopkgtest-satdep (0) ... 139s autopkgtest [11:34:55]: test testsuite: [----------------------- 139s 'python/tests' -> '/tmp/autopkgtest.2IzwvY/autopkgtest_tmp/tests' 139s 'python/tests/test_xray.py' -> '/tmp/autopkgtest.2IzwvY/autopkgtest_tmp/tests/test_xray.py' 139s 'python/tests/test_xraydb.py' -> '/tmp/autopkgtest.2IzwvY/autopkgtest_tmp/tests/test_xraydb.py' 139s 'python/tests/test_chem_materials.py' -> '/tmp/autopkgtest.2IzwvY/autopkgtest_tmp/tests/test_chem_materials.py' 139s [*] testing on python3.13: 140s ============================= test session starts ============================== 140s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 140s cachedir: .pytest_cache 140s rootdir: /tmp/autopkgtest.2IzwvY/autopkgtest_tmp 140s plugins: typeguard-4.4.1 140s collecting ... collected 0 items / 1 error 140s 140s ==================================== ERRORS ==================================== 140s ________________ ERROR collecting tests/test_chem_materials.py _________________ 140s ImportError while importing test module '/tmp/autopkgtest.2IzwvY/autopkgtest_tmp/tests/test_chem_materials.py'. 140s Hint: make sure your test modules/packages have valid Python names. 140s Traceback: 140s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 140s from . import multiarray 140s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 140s from . import overrides 140s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 140s from numpy.core._multiarray_umath import ( 140s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 140s 140s During handling of the above exception, another exception occurred: 140s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 140s from numpy.__config__ import show as show_config 140s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 140s from numpy.core._multiarray_umath import ( 140s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 140s raise ImportError(msg) 140s E ImportError: 140s E 140s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 140s E 140s E Importing the numpy C-extensions failed. This error can happen for 140s E many reasons, often due to issues with your setup or how NumPy was 140s E installed. 140s E 140s E We have compiled some common reasons and troubleshooting tips at: 140s E 140s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 140s E 140s E Please note and check the following: 140s E 140s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 140s E * The NumPy version is: "1.26.4" 140s E 140s E and make sure that they are the versions you expect. 140s E Please carefully study the documentation linked above for further help. 140s E 140s E Original error was: No module named 'numpy.core._multiarray_umath' 140s 140s The above exception was the direct cause of the following exception: 140s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 140s return _bootstrap._gcd_import(name[level:], package, level) 140s tests/test_chem_materials.py:7: in 140s import numpy as np 140s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 140s raise ImportError(msg) from e 140s E ImportError: Error importing numpy: you should not try to import numpy from 140s E its source directory; please exit the numpy source tree, and relaunch 140s E your python interpreter from there. 140s !!!!!!!!!!!!!!!!!!!!!!!!!! stopping after 1 failures !!!!!!!!!!!!!!!!!!!!!!!!!!! 140s =============================== 1 error in 0.06s =============================== 140s autopkgtest [11:34:56]: test testsuite: -----------------------] 141s testsuite FAIL non-zero exit status 1 141s autopkgtest [11:34:57]: test testsuite: - - - - - - - - - - results - - - - - - - - - - 141s autopkgtest [11:34:57]: test autodep8-python3: preparing testbed 228s autopkgtest [11:36:24]: testbed dpkg architecture: arm64 228s autopkgtest [11:36:24]: testbed apt version: 2.9.8 228s autopkgtest [11:36:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 229s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 229s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 229s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [849 kB] 229s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 229s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 229s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [104 kB] 229s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 229s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [601 kB] 230s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [17.1 kB] 230s Fetched 1794 kB in 1s (1549 kB/s) 230s Reading package lists... 232s Reading package lists... 232s Building dependency tree... 232s Reading state information... 233s Calculating upgrade... 234s The following NEW packages will be installed: 234s python3.13-gdbm 234s The following packages will be upgraded: 234s libpython3-stdlib python3 python3-gdbm python3-minimal 234s 4 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 234s Need to get 101 kB of archives. 234s After this operation, 141 kB of additional disk space will be used. 234s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-minimal arm64 3.12.7-1 [27.4 kB] 234s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3 arm64 3.12.7-1 [24.0 kB] 234s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libpython3-stdlib arm64 3.12.7-1 [10.0 kB] 234s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-gdbm arm64 3.13.0-2 [30.7 kB] 234s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-gdbm arm64 3.12.7-1 [8642 B] 235s Fetched 101 kB in 0s (283 kB/s) 235s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 235s Preparing to unpack .../python3-minimal_3.12.7-1_arm64.deb ... 235s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 235s Setting up python3-minimal (3.12.7-1) ... 235s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79924 files and directories currently installed.) 235s Preparing to unpack .../python3_3.12.7-1_arm64.deb ... 235s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 235s Preparing to unpack .../libpython3-stdlib_3.12.7-1_arm64.deb ... 235s Unpacking libpython3-stdlib:arm64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 235s Selecting previously unselected package python3.13-gdbm. 236s Preparing to unpack .../python3.13-gdbm_3.13.0-2_arm64.deb ... 236s Unpacking python3.13-gdbm (3.13.0-2) ... 236s Preparing to unpack .../python3-gdbm_3.12.7-1_arm64.deb ... 236s Unpacking python3-gdbm:arm64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 236s Setting up python3.13-gdbm (3.13.0-2) ... 236s Setting up libpython3-stdlib:arm64 (3.12.7-1) ... 236s Setting up python3 (3.12.7-1) ... 236s Setting up python3-gdbm:arm64 (3.12.7-1) ... 236s Processing triggers for man-db (2.12.1-3) ... 237s Reading package lists... 237s Building dependency tree... 237s Reading state information... 238s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 238s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 238s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 238s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 238s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 239s Reading package lists... 240s Reading package lists... 240s Building dependency tree... 240s Reading state information... 241s Calculating upgrade... 241s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 241s Reading package lists... 241s Building dependency tree... 241s Reading state information... 242s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 248s Reading package lists... 248s Building dependency tree... 248s Reading state information... 248s Starting pkgProblemResolver with broken count: 0 249s Starting 2 pkgProblemResolver with broken count: 0 249s Done 249s The following additional packages will be installed: 249s libblas3 libgfortran5 liblapack3 liblbfgsb0 libpython3.13-minimal 249s libpython3.13-stdlib python3-all python3-decorator python3-greenlet 249s python3-numpy python3-packaging python3-platformdirs python3-scipy 249s python3-sqlalchemy python3-xraydb python3.13 python3.13-minimal 249s Suggested packages: 249s python-greenlet-dev python-greenlet-doc gcc gfortran python-numpy-doc 249s python3-dev python3-pytest python-scipy-doc python-sqlalchemy-doc 249s python3-asyncpg python3-pg8000 python3-psycopg2 python3-psycopg2cffi 249s python3-aiosqlite python3-mariadb-connector python3-mysqldb 249s python3-mysql.connector python3-pyodbc python3-pymssql python3-cx-oracle 249s python3-oracledb python-xraydb-doc python3.13-venv python3.13-doc 249s binfmt-support 249s Recommended packages: 249s g++ | c++-compiler python3-pil python3-sqlalchemy-ext 249s The following NEW packages will be installed: 249s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 249s libpython3.13-minimal libpython3.13-stdlib python3-all python3-decorator 249s python3-greenlet python3-numpy python3-packaging python3-platformdirs 249s python3-scipy python3-sqlalchemy python3-xraydb python3.13 249s python3.13-minimal 249s 0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded. 249s Need to get 33.5 MB/33.5 MB of archives. 249s After this operation, 138 MB of additional disk space will be used. 249s Get:1 /tmp/autopkgtest.2IzwvY/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [712 B] 250s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-minimal arm64 3.13.0-2 [877 kB] 250s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13-minimal arm64 3.13.0-2 [2100 kB] 251s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 251s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 251s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 251s Get:7 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 251s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.13-stdlib arm64 3.13.0-2 [2073 kB] 251s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.13 arm64 3.13.0-2 [719 kB] 252s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 python3-all arm64 3.12.7-1 [890 B] 252s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 252s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11build1 [3654 kB] 252s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.1-1 [41.4 kB] 252s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 252s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-greenlet arm64 3.0.3-0ubuntu6 [153 kB] 252s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-sqlalchemy all 2.0.32+ds1-1ubuntu1 [1206 kB] 252s Get:17 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5 [16.3 MB] 253s Get:18 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-xraydb all 4.5.3-2 [3461 kB] 254s Fetched 33.5 MB in 4s (8199 kB/s) 254s Selecting previously unselected package libpython3.13-minimal:arm64. 254s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79931 files and directories currently installed.) 254s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_arm64.deb ... 254s Unpacking libpython3.13-minimal:arm64 (3.13.0-2) ... 254s Selecting previously unselected package python3.13-minimal. 254s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_arm64.deb ... 254s Unpacking python3.13-minimal (3.13.0-2) ... 254s Selecting previously unselected package libblas3:arm64. 254s Preparing to unpack .../02-libblas3_3.12.0-3build2_arm64.deb ... 254s Unpacking libblas3:arm64 (3.12.0-3build2) ... 254s Selecting previously unselected package libgfortran5:arm64. 254s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 254s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 254s Selecting previously unselected package liblapack3:arm64. 254s Preparing to unpack .../04-liblapack3_3.12.0-3build2_arm64.deb ... 254s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 254s Selecting previously unselected package liblbfgsb0:arm64. 254s Preparing to unpack .../05-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 254s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 254s Selecting previously unselected package libpython3.13-stdlib:arm64. 254s Preparing to unpack .../06-libpython3.13-stdlib_3.13.0-2_arm64.deb ... 254s Unpacking libpython3.13-stdlib:arm64 (3.13.0-2) ... 254s Selecting previously unselected package python3.13. 254s Preparing to unpack .../07-python3.13_3.13.0-2_arm64.deb ... 254s Unpacking python3.13 (3.13.0-2) ... 254s Selecting previously unselected package python3-all. 255s Preparing to unpack .../08-python3-all_3.12.7-1_arm64.deb ... 255s Unpacking python3-all (3.12.7-1) ... 255s Selecting previously unselected package python3-decorator. 255s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 255s Unpacking python3-decorator (5.1.1-5) ... 255s Selecting previously unselected package python3-numpy. 255s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-11build1_arm64.deb ... 255s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 255s Selecting previously unselected package python3-packaging. 255s Preparing to unpack .../11-python3-packaging_24.1-1_all.deb ... 255s Unpacking python3-packaging (24.1-1) ... 255s Selecting previously unselected package python3-platformdirs. 255s Preparing to unpack .../12-python3-platformdirs_4.3.6-1_all.deb ... 255s Unpacking python3-platformdirs (4.3.6-1) ... 255s Selecting previously unselected package python3-greenlet. 255s Preparing to unpack .../13-python3-greenlet_3.0.3-0ubuntu6_arm64.deb ... 255s Unpacking python3-greenlet (3.0.3-0ubuntu6) ... 255s Selecting previously unselected package python3-sqlalchemy. 255s Preparing to unpack .../14-python3-sqlalchemy_2.0.32+ds1-1ubuntu1_all.deb ... 255s Unpacking python3-sqlalchemy (2.0.32+ds1-1ubuntu1) ... 255s Selecting previously unselected package python3-scipy. 255s Preparing to unpack .../15-python3-scipy_1.13.1-5_arm64.deb ... 255s Unpacking python3-scipy (1.13.1-5) ... 255s Selecting previously unselected package python3-xraydb. 255s Preparing to unpack .../16-python3-xraydb_4.5.3-2_all.deb ... 255s Unpacking python3-xraydb (4.5.3-2) ... 256s Selecting previously unselected package autopkgtest-satdep. 256s Preparing to unpack .../17-2-autopkgtest-satdep.deb ... 256s Unpacking autopkgtest-satdep (0) ... 256s Setting up python3-platformdirs (4.3.6-1) ... 256s Setting up libpython3.13-minimal:arm64 (3.13.0-2) ... 256s Setting up python3-decorator (5.1.1-5) ... 256s Setting up libblas3:arm64 (3.12.0-3build2) ... 256s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 256s Setting up python3-packaging (24.1-1) ... 256s Setting up python3-greenlet (3.0.3-0ubuntu6) ... 257s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 257s Setting up python3.13-minimal (3.13.0-2) ... 258s Setting up libpython3.13-stdlib:arm64 (3.13.0-2) ... 258s Setting up liblapack3:arm64 (3.12.0-3build2) ... 258s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 258s Setting up python3.13 (3.13.0-2) ... 259s Setting up python3-all (3.12.7-1) ... 259s Setting up python3-sqlalchemy (2.0.32+ds1-1ubuntu1) ... 262s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 266s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 266s Setting up python3-scipy (1.13.1-5) ... 273s Setting up python3-xraydb (4.5.3-2) ... 274s Setting up autopkgtest-satdep (0) ... 274s Processing triggers for systemd (256.5-2ubuntu4) ... 274s Processing triggers for man-db (2.12.1-3) ... 274s Processing triggers for libc-bin (2.40-1ubuntu3) ... 277s (Reading database ... 83461 files and directories currently installed.) 277s Removing autopkgtest-satdep (0) ... 281s autopkgtest [11:37:17]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import xraydb; print(xraydb)" ; done 281s autopkgtest [11:37:17]: test autodep8-python3: [----------------------- 281s Testing with python3.13: 281s Traceback (most recent call last): 281s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 281s from . import multiarray 281s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 281s from . import overrides 281s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 281s from numpy.core._multiarray_umath import ( 281s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 281s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 281s 281s During handling of the above exception, another exception occurred: 281s 281s Traceback (most recent call last): 281s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 281s from numpy.__config__ import show as show_config 281s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 281s from numpy.core._multiarray_umath import ( 281s ...<3 lines>... 281s ) 281s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 281s raise ImportError(msg) 281s ImportError: 281s 281s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 281s 281s Importing the numpy C-extensions failed. This error can happen for 281s many reasons, often due to issues with your setup or how NumPy was 281s installed. 281s 281s We have compiled some common reasons and troubleshooting tips at: 281s 281s https://numpy.org/devdocs/user/troubleshooting-importerror.html 281s 281s Please note and check the following: 281s 281s * The Python version is: Python3.13 from "/usr/bin/python3.13" 281s * The NumPy version is: "1.26.4" 281s 281s and make sure that they are the versions you expect. 281s Please carefully study the documentation linked above for further help. 281s 281s Original error was: No module named 'numpy.core._multiarray_umath' 281s 281s 281s The above exception was the direct cause of the following exception: 281s 281s Traceback (most recent call last): 281s File "", line 1, in 281s import xraydb; print(xraydb) 281s ^^^^^^^^^^^^^ 281s File "/usr/lib/python3/dist-packages/xraydb/__init__.py", line 14, in 281s from .xraydb import XrayDB 281s File "/usr/lib/python3/dist-packages/xraydb/xraydb.py", line 12, in 281s import numpy as np 281s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 281s raise ImportError(msg) from e 281s ImportError: Error importing numpy: you should not try to import numpy from 281s its source directory; please exit the numpy source tree, and relaunch 281s your python interpreter from there. 281s autopkgtest [11:37:17]: test autodep8-python3: -----------------------] 282s autodep8-python3 FAIL non-zero exit status 1 282s autopkgtest [11:37:18]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 282s autopkgtest [11:37:18]: @@@@@@@@@@@@@@@@@@@@ summary 282s testsuite FAIL non-zero exit status 1 282s autodep8-python3 FAIL non-zero exit status 1 295s nova [W] Skipping flock in bos03-arm64 295s Creating nova instance adt-plucky-arm64-xraydb-20241113-113231-juju-7f2275-prod-proposed-migration-environment-15-1e7cee8e-32a9-49f2-b39c-3444e2a7c6f3 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)... 295s nova [W] Skipping flock in bos03-arm64 295s Creating nova instance adt-plucky-arm64-xraydb-20241113-113231-juju-7f2275-prod-proposed-migration-environment-15-1e7cee8e-32a9-49f2-b39c-3444e2a7c6f3 from image adt/ubuntu-plucky-arm64-server-20241113.img (UUID 2d7760e6-2439-4200-89d6-5ed33e5c6330)...