0s autopkgtest [17:21:28]: starting date and time: 2025-03-15 17:21:28+0000 0s autopkgtest [17:21:28]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:21:28]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.trpycdv9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade vmatch --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-17.secgroup --name adt-plucky-arm64-vmatch-20250315-172128-juju-7f2275-prod-proposed-migration-environment-2-75a14068-ee07-46f2-9605-bc2e18d6835a --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 149s autopkgtest [17:23:57]: testbed dpkg architecture: arm64 150s autopkgtest [17:23:58]: testbed apt version: 2.9.33 150s autopkgtest [17:23:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 150s autopkgtest [17:23:58]: testbed release detected to be: None 151s autopkgtest [17:23:59]: updating testbed package index (apt update) 152s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 152s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 152s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 152s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 152s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 153s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 153s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 153s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [111 kB] 153s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 c-n-f Metadata [1856 B] 153s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 c-n-f Metadata [116 B] 153s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [324 kB] 153s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 c-n-f Metadata [14.7 kB] 153s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [4948 B] 153s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 c-n-f Metadata [268 B] 153s Fetched 1078 kB in 2s (639 kB/s) 155s Reading package lists... 155s Reading package lists... 156s Building dependency tree... 156s Reading state information... 157s Calculating upgrade... 157s Calculating upgrade... 158s The following packages will be upgraded: 158s pinentry-curses python3-jinja2 strace 159s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 647 kB of archives. 159s After this operation, 11.3 kB of additional disk space will be used. 159s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 strace arm64 6.13+ds-1ubuntu1 [499 kB] 159s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 pinentry-curses arm64 1.3.1-2ubuntu3 [39.2 kB] 159s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 160s Fetched 647 kB in 1s (611 kB/s) 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 161s Preparing to unpack .../strace_6.13+ds-1ubuntu1_arm64.deb ... 161s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 161s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_arm64.deb ... 161s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 161s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 161s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 161s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 161s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 161s Setting up strace (6.13+ds-1ubuntu1) ... 161s Processing triggers for man-db (2.13.0-1) ... 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 163s Solving dependencies... 163s The following packages will be REMOVED: 163s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 163s libunwind8* linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 163s linux-image-6.11.0-8-generic* linux-modules-6.11.0-8-generic* 163s linux-tools-6.11.0-8* linux-tools-6.11.0-8-generic* 164s 0 upgraded, 0 newly installed, 11 to remove and 5 not upgraded. 164s After this operation, 267 MB disk space will be freed. 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117701 files and directories currently installed.) 164s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 164s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 164s Removing libpython3.12t64:arm64 (3.12.9-1) ... 164s Removing libpython3.12-stdlib:arm64 (3.12.9-1) ... 164s Removing libnsl2:arm64 (1.3.0-3build3) ... 164s Removing libpython3.12-minimal:arm64 (3.12.9-1) ... 164s Removing libunwind8:arm64 (1.6.2-3.1) ... 164s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 165s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 166s Removing linux-image-6.11.0-8-generic (6.11.0-8.8) ... 166s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.14.0-10-generic 166s I: /boot/initrd.img.old is now a symlink to initrd.img-6.14.0-10-generic 166s /etc/kernel/postrm.d/initramfs-tools: 166s update-initramfs: Deleting /boot/initrd.img-6.11.0-8-generic 167s /etc/kernel/postrm.d/zz-flash-kernel: 167s flash-kernel: Kernel 6.11.0-8-generic has been removed. 167s flash-kernel: A higher version (6.14.0-10-generic) is still installed, no reflashing required. 167s /etc/kernel/postrm.d/zz-update-grub: 167s Sourcing file `/etc/default/grub' 167s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 167s Generating grub configuration file ... 167s Found linux image: /boot/vmlinuz-6.14.0-10-generic 167s Found initrd image: /boot/initrd.img-6.14.0-10-generic 168s Warning: os-prober will not be executed to detect other bootable partitions. 168s Systems on them will not be added to the GRUB boot configuration. 168s Check GRUB_DISABLE_OS_PROBER documentation entry. 168s Adding boot menu entry for UEFI Firmware Settings ... 168s done 168s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 168s Processing triggers for libc-bin (2.41-1ubuntu1) ... 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81650 files and directories currently installed.) 168s Purging configuration files for linux-image-6.11.0-8-generic (6.11.0-8.8) ... 168s Purging configuration files for libpython3.12-minimal:arm64 (3.12.9-1) ... 168s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 169s autopkgtest [17:24:17]: upgrading testbed (apt dist-upgrade and autopurge) 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 170s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 171s Starting 2 pkgProblemResolver with broken count: 0 171s Done 172s Entering ResolveByKeep 173s 173s Calculating upgrade... 174s The following packages will be upgraded: 174s libc-bin libc-dev-bin libc6 libc6-dev locales 174s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s Need to get 9530 kB of archives. 174s After this operation, 0 B of additional disk space will be used. 174s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6-dev arm64 2.41-1ubuntu2 [1750 kB] 176s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-dev-bin arm64 2.41-1ubuntu2 [24.0 kB] 176s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc6 arm64 2.41-1ubuntu2 [2910 kB] 179s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 libc-bin arm64 2.41-1ubuntu2 [600 kB] 180s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 locales all 2.41-1ubuntu2 [4246 kB] 184s Preconfiguring packages ... 185s Fetched 9530 kB in 10s (941 kB/s) 185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 185s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_arm64.deb ... 185s Unpacking libc6-dev:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 185s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_arm64.deb ... 185s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 185s Preparing to unpack .../libc6_2.41-1ubuntu2_arm64.deb ... 185s Unpacking libc6:arm64 (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 186s Setting up libc6:arm64 (2.41-1ubuntu2) ... 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 186s Preparing to unpack .../libc-bin_2.41-1ubuntu2_arm64.deb ... 186s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 186s Setting up libc-bin (2.41-1ubuntu2) ... 186s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 186s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 186s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 186s Setting up locales (2.41-1ubuntu2) ... 188s Generating locales (this might take a while)... 190s en_US.UTF-8... done 190s Generation complete. 190s Setting up libc-dev-bin (2.41-1ubuntu2) ... 190s Setting up libc6-dev:arm64 (2.41-1ubuntu2) ... 190s Processing triggers for man-db (2.13.0-1) ... 191s Processing triggers for systemd (257.3-1ubuntu3) ... 192s Reading package lists... 192s Building dependency tree... 192s Reading state information... 193s Starting pkgProblemResolver with broken count: 0 193s Starting 2 pkgProblemResolver with broken count: 0 193s Done 194s Solving dependencies... 194s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 195s autopkgtest [17:24:43]: rebooting testbed after setup commands that affected boot 220s autopkgtest [17:25:08]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP PREEMPT_DYNAMIC Wed Mar 12 15:45:31 UTC 2025 224s autopkgtest [17:25:12]: @@@@@@@@@@@@@@@@@@@@ apt-source vmatch 229s Get:1 http://ftpmaster.internal/ubuntu plucky/universe vmatch 2.3.1+dfsg-9 (dsc) [2074 B] 229s Get:2 http://ftpmaster.internal/ubuntu plucky/universe vmatch 2.3.1+dfsg-9 (tar) [2121 kB] 229s Get:3 http://ftpmaster.internal/ubuntu plucky/universe vmatch 2.3.1+dfsg-9 (diff) [79.6 kB] 230s gpgv: Signature made Fri Dec 15 12:41:29 2023 UTC 230s gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 230s gpgv: Can't check signature: No public key 230s dpkg-source: warning: cannot verify inline signature for ./vmatch_2.3.1+dfsg-9.dsc: no acceptable signature found 230s autopkgtest [17:25:18]: testing package vmatch version 2.3.1+dfsg-9 230s autopkgtest [17:25:18]: build not needed 231s autopkgtest [17:25:19]: test run-example: preparing testbed 232s Reading package lists... 232s Building dependency tree... 232s Reading state information... 232s Starting pkgProblemResolver with broken count: 0 233s Starting 2 pkgProblemResolver with broken count: 0 233s Done 233s The following NEW packages will be installed: 233s libvmatch-dev vmatch 233s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 233s Need to get 1152 kB of archives. 233s After this operation, 8140 kB of additional disk space will be used. 233s Get:1 http://ftpmaster.internal/ubuntu plucky/universe arm64 libvmatch-dev arm64 2.3.1+dfsg-9 [736 kB] 234s Get:2 http://ftpmaster.internal/ubuntu plucky/universe arm64 vmatch arm64 2.3.1+dfsg-9 [416 kB] 235s Fetched 1152 kB in 2s (657 kB/s) 235s Selecting previously unselected package libvmatch-dev. 236s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81647 files and directories currently installed.) 236s Preparing to unpack .../libvmatch-dev_2.3.1+dfsg-9_arm64.deb ... 236s Unpacking libvmatch-dev (2.3.1+dfsg-9) ... 236s Selecting previously unselected package vmatch. 236s Preparing to unpack .../vmatch_2.3.1+dfsg-9_arm64.deb ... 236s Unpacking vmatch (2.3.1+dfsg-9) ... 236s Setting up libvmatch-dev (2.3.1+dfsg-9) ... 236s Setting up vmatch (2.3.1+dfsg-9) ... 236s Processing triggers for man-db (2.13.0-1) ... 238s autopkgtest [17:25:26]: test run-example: [----------------------- 238s reading file "U89959_genomic.fas" 238s for this input size and alphabet size, the maximal prefixlength 238s (argument of option -pl) is 7, 238s the recommended prefixlength is 6 238s total length of sequences: 106973 238s alphabet "aAcCgGtTuUnsywrkvbdhmNSYWRKVBDHM" (size 32) mapped to "acgtn" (size 5) 238s create file "U89959_genomic.fas.tis" 238s create file "U89959_genomic.fas.ois" 238s create file "U89959_genomic.fas.des" 238s create file "U89959_genomic.fas.sds" 238s create file "U89959_genomic.fas.lcp" 238s initializing data structures 238s sorting suffixes according to prefix of length 6 238s sorting all buckets 238s create file "U89959_genomic.fas.llv" 238s create file "U89959_genomic.fas.bck" 238s create file "U89959_genomic.fas.suf" 238s create file "U89959_genomic.fas.sti1" 238s create file "U89959_genomic.fas.bwt" 238s create file "U89959_genomic.fas.prj" 238s create file "U89959_genomic.fas.al1" 238s create file "U89959_genomic.fas.skp" 238s overall space peak: main=1.15 MB (11.24 bytes/symbol), secondary=0.21 MB 238s autopkgtest [17:25:26]: test run-example: -----------------------] 239s autopkgtest [17:25:27]: test run-example: - - - - - - - - - - results - - - - - - - - - - 239s run-example PASS 239s autopkgtest [17:25:27]: @@@@@@@@@@@@@@@@@@@@ summary 239s run-example PASS 258s nova [W] Using flock in prodstack6-arm64 258s Creating nova instance adt-plucky-arm64-vmatch-20250315-172128-juju-7f2275-prod-proposed-migration-environment-2-75a14068-ee07-46f2-9605-bc2e18d6835a from image adt/ubuntu-plucky-arm64-server-20250315.img (UUID bd6e766c-b51f-4b53-86d6-23aa4d18f524)... 258s nova [W] Timed out waiting for 1b2b4971-5648-4740-b712-442169840bc1 to get deleted.