0s autopkgtest [19:57:55]: starting date and time: 2024-11-18 19:57:55+0000 0s autopkgtest [19:57:55]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [19:57:55]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.z0ck8cu6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:openmpi,src:sphinx-rtd-theme --apt-upgrade unifrac --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu1 openmpi/5.0.5-6 sphinx-rtd-theme/3.0.2+dfsg-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-23.secgroup --name adt-plucky-arm64-unifrac-20241118-195755-juju-7f2275-prod-proposed-migration-environment-20-e830dfc4-fc4f-4024-8343-d1302a655184 --image adt/ubuntu-plucky-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 75s autopkgtest [19:59:10]: testbed dpkg architecture: arm64 75s autopkgtest [19:59:10]: testbed apt version: 2.9.8 75s autopkgtest [19:59:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 76s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 76s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 76s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [826 kB] 76s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 76s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [72.9 kB] 76s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main arm64 Packages [105 kB] 76s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted arm64 Packages [50.3 kB] 76s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 Packages [645 kB] 76s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse arm64 Packages [6696 B] 77s Fetched 1801 kB in 1s (2152 kB/s) 77s Reading package lists... 79s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade... 80s The following NEW packages will be installed: 80s liblsof0 80s The following packages will be upgraded: 80s libnvme1t64 linux-firmware lsof 81s 3 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 81s Need to get 538 MB of archives. 81s After this operation, 1548 kB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsof0 arm64 4.99.3+dfsg-2 [53.5 kB] 81s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 lsof arm64 4.99.3+dfsg-2 [235 kB] 81s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 libnvme1t64 arm64 1.11.1-1 [83.7 kB] 81s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 linux-firmware arm64 20241118.git6e4e94b0-0ubuntu1 [537 MB] 108s Fetched 538 MB in 27s (19.6 MB/s) 108s Selecting previously unselected package liblsof0. 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 79972 files and directories currently installed.) 109s Preparing to unpack .../liblsof0_4.99.3+dfsg-2_arm64.deb ... 109s Unpacking liblsof0 (4.99.3+dfsg-2) ... 109s Preparing to unpack .../lsof_4.99.3+dfsg-2_arm64.deb ... 109s Unpacking lsof (4.99.3+dfsg-2) over (4.95.0-1.1) ... 109s Preparing to unpack .../libnvme1t64_1.11.1-1_arm64.deb ... 109s Unpacking libnvme1t64 (1.11.1-1) over (1.11-2) ... 109s Preparing to unpack .../linux-firmware_20241118.git6e4e94b0-0ubuntu1_arm64.deb ... 109s Unpacking linux-firmware (20241118.git6e4e94b0-0ubuntu1) over (20241108.git3bbb13a7-0ubuntu1) ... 112s Setting up linux-firmware (20241118.git6e4e94b0-0ubuntu1) ... 112s Setting up liblsof0 (4.99.3+dfsg-2) ... 112s Setting up libnvme1t64 (1.11.1-1) ... 112s Setting up lsof (4.99.3+dfsg-2) ... 112s Processing triggers for man-db (2.13.0-1) ... 112s Processing triggers for libc-bin (2.40-1ubuntu3) ... 112s Processing triggers for initramfs-tools (0.142ubuntu35) ... 112s update-initramfs: Generating /boot/initrd.img-6.11.0-8-generic 112s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 128s System running in EFI mode, skipping. 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 130s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 130s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 130s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 131s Reading package lists... 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Calculating upgrade... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s autopkgtest [20:00:08]: rebooting testbed after setup commands that affected boot 159s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 165s autopkgtest [20:00:40]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 14:19:41 UTC 2024 168s autopkgtest [20:00:43]: @@@@@@@@@@@@@@@@@@@@ apt-source unifrac 170s Get:1 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (dsc) [2198 B] 170s Get:2 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (tar) [65.9 kB] 170s Get:3 http://ftpmaster.internal/ubuntu plucky/universe unifrac 1.3-4 (diff) [7788 B] 170s gpgv: Signature made Sun Sep 8 11:06:50 2024 UTC 170s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 170s gpgv: Can't check signature: No public key 170s dpkg-source: warning: cannot verify inline signature for ./unifrac_1.3-4.dsc: no acceptable signature found 171s autopkgtest [20:00:46]: testing package unifrac version 1.3-4 171s autopkgtest [20:00:46]: build not needed 172s autopkgtest [20:00:47]: test pybuild-autopkgtest: preparing testbed 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 178s Starting pkgProblemResolver with broken count: 0 178s Starting 2 pkgProblemResolver with broken count: 0 178s Done 178s The following additional packages will be installed: 178s autoconf automake autopoint autotools-dev build-essential cpp cpp-14 178s cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper debugedit 178s dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz g++ g++-14 178s g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 178s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext hdf5-helpers 178s intltool-debian libaec-dev libaec0 libarchive-zip-perl libasan8 libblas3 178s libbrotli-dev libcc1-0 libcurl4-openssl-dev libdebhelper-perl 178s libevent-2.1-7t64 libexpat1-dev libfile-stripnondeterminism-perl 178s libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 178s libgnutls-openssl27t64 libgnutls28-dev libgomp1 libhdf5-103-1t64 178s libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 178s libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libidn2-dev 178s libisl23 libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 178s libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 178s liblapacke liblbfgsb0 liblsan0 liblzf1 libmpc3 libnghttp2-dev libp11-kit-dev 178s libpkgconf3 libpsl-dev libpython3-all-dev libpython3-dev libpython3.12-dev 178s librtmp-dev libssh2-1-dev libssl-dev libssu-dev libssu0 libssw0 178s libstdc++-14-dev libsz2 libtasn1-6-dev libtmglib3 libtool libtsan2 libubsan1 178s libunbound8 libzstd-dev m4 nettle-dev pkgconf pkgconf-bin po-debconf 178s pybuild-plugin-autopkgtest python3-all python3-all-dev python3-biom-format 178s python3-click python3-colorama python3-dateutil python3-decorator 178s python3-dev python3-h5py python3-h5py-serial python3-hdmedians 178s python3-iniconfig python3-iow python3-natsort python3-numpy 178s python3-packaging python3-pandas python3-pandas-lib python3-patsy 178s python3-pluggy python3-pytest python3-scipy python3-skbio 178s python3-statsmodels python3-statsmodels-lib python3-tz python3-unifrac 178s python3.12-dev zlib1g-dev 178s Suggested packages: 178s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales 178s cpp-14-doc cython-doc dh-make flit python3-build python3-installer 178s python3-wheel gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc 178s gdb-aarch64-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 178s libcurl4-doc libidn-dev libkrb5-dev libldap2-dev gmp-doc libgmp10-doc 178s libmpfr-dev dns-root-data gnutls-bin gnutls-doc libhdf5-doc libnghttp2-doc 178s p11-kit-doc libssl-doc libstdc++-14-doc libtool-doc gfortran 178s | fortran95-compiler gcj-jdk m4-doc libmail-box-perl python-biom-format-doc 178s python-h5py-doc python-natsort-doc gfortran python-numpy-doc 178s python-pandas-doc python-patsy-doc python-scipy-doc python-skbio-doc 178s python-statsmodels-doc 178s Recommended packages: 178s libarchive-cpio-perl javascript-common libtasn1-doc libltdl-dev 178s libmail-sendmail-perl python3-matplotlib python3-bottleneck python3-numexpr 178s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 178s python3-tables python3-pil python3-joblib python3-cvxopt 178s The following NEW packages will be installed: 178s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 178s cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper 178s debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz g++ 178s g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14 178s gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext hdf5-helpers 178s intltool-debian libaec-dev libaec0 libarchive-zip-perl libasan8 libblas3 178s libbrotli-dev libcc1-0 libcurl4-openssl-dev libdebhelper-perl 178s libevent-2.1-7t64 libexpat1-dev libfile-stripnondeterminism-perl 178s libgcc-14-dev libgfortran5 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 178s libgnutls-openssl27t64 libgnutls28-dev libgomp1 libhdf5-103-1t64 178s libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 178s libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libidn2-dev 178s libisl23 libitm1 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 178s libjpeg8-dev libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 178s liblapacke liblbfgsb0 liblsan0 liblzf1 libmpc3 libnghttp2-dev libp11-kit-dev 178s libpkgconf3 libpsl-dev libpython3-all-dev libpython3-dev libpython3.12-dev 178s librtmp-dev libssh2-1-dev libssl-dev libssu-dev libssu0 libssw0 178s libstdc++-14-dev libsz2 libtasn1-6-dev libtmglib3 libtool libtsan2 libubsan1 178s libunbound8 libzstd-dev m4 nettle-dev pkgconf pkgconf-bin po-debconf 178s pybuild-plugin-autopkgtest python3-all python3-all-dev python3-biom-format 178s python3-click python3-colorama python3-dateutil python3-decorator 178s python3-dev python3-h5py python3-h5py-serial python3-hdmedians 178s python3-iniconfig python3-iow python3-natsort python3-numpy 178s python3-packaging python3-pandas python3-pandas-lib python3-patsy 178s python3-pluggy python3-pytest python3-scipy python3-skbio 178s python3-statsmodels python3-statsmodels-lib python3-tz python3-unifrac 178s python3.12-dev zlib1g-dev 178s 0 upgraded, 131 newly installed, 0 to remove and 0 not upgraded. 178s Need to get 138 MB/138 MB of archives. 178s After this operation, 603 MB of additional disk space will be used. 178s Get:1 /tmp/autopkgtest.wCxtrG/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [864 B] 179s Get:2 http://ftpmaster.internal/ubuntu plucky/main arm64 m4 arm64 1.4.19-4build1 [240 kB] 179s Get:3 http://ftpmaster.internal/ubuntu plucky/main arm64 autoconf all 2.72-3 [382 kB] 179s Get:4 http://ftpmaster.internal/ubuntu plucky/main arm64 autotools-dev all 20220109.1 [44.9 kB] 179s Get:5 http://ftpmaster.internal/ubuntu plucky/main arm64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 179s Get:6 http://ftpmaster.internal/ubuntu plucky/main arm64 autopoint all 0.22.5-2 [616 kB] 179s Get:7 http://ftpmaster.internal/ubuntu plucky/main arm64 libisl23 arm64 0.27-1 [676 kB] 179s Get:8 http://ftpmaster.internal/ubuntu plucky/main arm64 libmpc3 arm64 1.3.1-1build2 [56.8 kB] 179s Get:9 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [10.6 MB] 179s Get:10 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-14 arm64 14.2.0-8ubuntu1 [1028 B] 179s Get:11 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [5452 B] 179s Get:12 http://ftpmaster.internal/ubuntu plucky/main arm64 cpp arm64 4:14.1.0-2ubuntu1 [22.5 kB] 179s Get:13 http://ftpmaster.internal/ubuntu plucky/main arm64 libcc1-0 arm64 14.2.0-8ubuntu1 [49.7 kB] 179s Get:14 http://ftpmaster.internal/ubuntu plucky/main arm64 libgomp1 arm64 14.2.0-8ubuntu1 [145 kB] 179s Get:15 http://ftpmaster.internal/ubuntu plucky/main arm64 libitm1 arm64 14.2.0-8ubuntu1 [27.8 kB] 179s Get:16 http://ftpmaster.internal/ubuntu plucky/main arm64 libasan8 arm64 14.2.0-8ubuntu1 [2893 kB] 180s Get:17 http://ftpmaster.internal/ubuntu plucky/main arm64 liblsan0 arm64 14.2.0-8ubuntu1 [1283 kB] 180s Get:18 http://ftpmaster.internal/ubuntu plucky/main arm64 libtsan2 arm64 14.2.0-8ubuntu1 [2686 kB] 180s Get:19 http://ftpmaster.internal/ubuntu plucky/main arm64 libubsan1 arm64 14.2.0-8ubuntu1 [1151 kB] 180s Get:20 http://ftpmaster.internal/ubuntu plucky/main arm64 libhwasan0 arm64 14.2.0-8ubuntu1 [1598 kB] 180s Get:21 http://ftpmaster.internal/ubuntu plucky/main arm64 libgcc-14-dev arm64 14.2.0-8ubuntu1 [2594 kB] 180s Get:22 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [20.9 MB] 181s Get:23 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-14 arm64 14.2.0-8ubuntu1 [518 kB] 181s Get:24 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [1200 B] 181s Get:25 http://ftpmaster.internal/ubuntu plucky/main arm64 gcc arm64 4:14.1.0-2ubuntu1 [4994 B] 181s Get:26 http://ftpmaster.internal/ubuntu plucky/main arm64 libstdc++-14-dev arm64 14.2.0-8ubuntu1 [2476 kB] 181s Get:27 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8ubuntu1 [12.1 MB] 181s Get:28 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-14 arm64 14.2.0-8ubuntu1 [19.9 kB] 181s Get:29 http://ftpmaster.internal/ubuntu plucky/main arm64 g++-aarch64-linux-gnu arm64 4:14.1.0-2ubuntu1 [958 B] 181s Get:30 http://ftpmaster.internal/ubuntu plucky/main arm64 g++ arm64 4:14.1.0-2ubuntu1 [1080 B] 181s Get:31 http://ftpmaster.internal/ubuntu plucky/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 181s Get:32 http://ftpmaster.internal/ubuntu plucky/universe arm64 cython3 arm64 3.0.11+dfsg-1ubuntu2 [2977 kB] 181s Get:33 http://ftpmaster.internal/ubuntu plucky/main arm64 libdebhelper-perl all 13.20ubuntu1 [94.2 kB] 181s Get:34 http://ftpmaster.internal/ubuntu plucky/main arm64 libtool all 2.4.7-8 [166 kB] 181s Get:35 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-autoreconf all 20 [16.1 kB] 181s Get:36 http://ftpmaster.internal/ubuntu plucky/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] 181s Get:37 http://ftpmaster.internal/ubuntu plucky/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB] 181s Get:38 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-strip-nondeterminism all 1.14.0-1 [5058 B] 181s Get:39 http://ftpmaster.internal/ubuntu plucky/main arm64 debugedit arm64 1:5.1-1 [45.9 kB] 181s Get:40 http://ftpmaster.internal/ubuntu plucky/main arm64 dwz arm64 0.15-1build6 [113 kB] 181s Get:41 http://ftpmaster.internal/ubuntu plucky/main arm64 gettext arm64 0.22.5-2 [930 kB] 181s Get:42 http://ftpmaster.internal/ubuntu plucky/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 181s Get:43 http://ftpmaster.internal/ubuntu plucky/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] 181s Get:44 http://ftpmaster.internal/ubuntu plucky/main arm64 debhelper all 13.20ubuntu1 [893 kB] 181s Get:45 http://ftpmaster.internal/ubuntu plucky/universe arm64 dh-python all 6.20241024 [112 kB] 181s Get:46 http://ftpmaster.internal/ubuntu plucky/universe arm64 hdf5-helpers arm64 1.10.10+repack-4ubuntu3 [16.2 kB] 181s Get:47 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec0 arm64 1.1.3-1 [22.0 kB] 181s Get:48 http://ftpmaster.internal/ubuntu plucky/main arm64 libblas3 arm64 3.12.0-3build2 [152 kB] 181s Get:49 http://ftpmaster.internal/ubuntu plucky/main arm64 libbrotli-dev arm64 1.1.0-2build3 [359 kB] 181s Get:50 http://ftpmaster.internal/ubuntu plucky/main arm64 libidn2-dev arm64 2.3.7-2build2 [120 kB] 181s Get:51 http://ftpmaster.internal/ubuntu plucky/main arm64 libpkgconf3 arm64 1.8.1-4 [31.4 kB] 181s Get:52 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf-bin arm64 1.8.1-4 [20.9 kB] 181s Get:53 http://ftpmaster.internal/ubuntu plucky/main arm64 pkgconf arm64 1.8.1-4 [16.7 kB] 181s Get:54 http://ftpmaster.internal/ubuntu plucky/main arm64 libnghttp2-dev arm64 1.64.0-1 [120 kB] 181s Get:55 http://ftpmaster.internal/ubuntu plucky/main arm64 libpsl-dev arm64 0.21.2-1.1build1 [77.2 kB] 181s Get:56 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2ubuntu7 [10.1 kB] 181s Get:57 http://ftpmaster.internal/ubuntu plucky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2ubuntu7 [335 kB] 181s Get:58 http://ftpmaster.internal/ubuntu plucky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [140 kB] 181s Get:59 http://ftpmaster.internal/ubuntu plucky/main arm64 libunbound8 arm64 1.20.0-1ubuntu2.1 [431 kB] 181s Get:60 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-dane0t64 arm64 3.8.8-2ubuntu1 [24.3 kB] 181s Get:61 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2ubuntu1 [24.3 kB] 182s Get:62 http://ftpmaster.internal/ubuntu plucky/main arm64 libp11-kit-dev arm64 0.25.5-2ubuntu1 [22.7 kB] 182s Get:63 http://ftpmaster.internal/ubuntu plucky/main arm64 libtasn1-6-dev arm64 4.19.0-3build1 [90.6 kB] 182s Get:64 http://ftpmaster.internal/ubuntu plucky/main arm64 nettle-dev arm64 3.10-1 [1189 kB] 182s Get:65 http://ftpmaster.internal/ubuntu plucky/main arm64 libgnutls28-dev arm64 3.8.8-2ubuntu1 [1138 kB] 182s Get:66 http://ftpmaster.internal/ubuntu plucky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1ubuntu1 [894 kB] 182s Get:67 http://ftpmaster.internal/ubuntu plucky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2build7 [69.4 kB] 182s Get:68 http://ftpmaster.internal/ubuntu plucky/main arm64 libssl-dev arm64 3.3.1-2ubuntu2 [3176 kB] 182s Get:69 http://ftpmaster.internal/ubuntu plucky/main arm64 libssh2-1-dev arm64 1.11.1-1 [286 kB] 182s Get:70 http://ftpmaster.internal/ubuntu plucky/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [352 kB] 182s Get:71 http://ftpmaster.internal/ubuntu plucky/main arm64 libcurl4-openssl-dev arm64 8.9.1-2ubuntu2 [491 kB] 182s Get:72 http://ftpmaster.internal/ubuntu plucky/main arm64 libexpat1-dev arm64 2.6.4-1 [129 kB] 182s Get:73 http://ftpmaster.internal/ubuntu plucky/main arm64 libgfortran5 arm64 14.2.0-8ubuntu1 [438 kB] 182s Get:74 http://ftpmaster.internal/ubuntu plucky/universe arm64 libsz2 arm64 1.1.3-1 [5254 B] 182s Get:75 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4ubuntu3 [1207 kB] 182s Get:76 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4ubuntu3 [118 kB] 182s Get:77 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4ubuntu3 [87.2 kB] 182s Get:78 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4ubuntu3 [56.9 kB] 182s Get:79 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4ubuntu3 [31.0 kB] 182s Get:80 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4ubuntu3 [11.0 kB] 182s Get:81 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu2 [163 kB] 182s Get:82 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu2 [305 kB] 182s Get:83 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 182s Get:84 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 182s Get:85 http://ftpmaster.internal/ubuntu plucky/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 182s Get:86 http://ftpmaster.internal/ubuntu plucky/universe arm64 libaec-dev arm64 1.1.3-1 [19.3 kB] 182s Get:87 http://ftpmaster.internal/ubuntu plucky/universe arm64 libhdf5-dev arm64 1.10.10+repack-4ubuntu3 [3043 kB] 182s Get:88 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 182s Get:89 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 182s Get:90 http://ftpmaster.internal/ubuntu plucky/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] 182s Get:91 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapack3 arm64 3.12.0-3build2 [2293 kB] 182s Get:92 http://ftpmaster.internal/ubuntu plucky/main arm64 libtmglib3 arm64 3.12.0-3build2 [119 kB] 182s Get:93 http://ftpmaster.internal/ubuntu plucky/main arm64 liblapacke arm64 3.12.0-3build2 [423 kB] 182s Get:94 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 182s Get:95 http://ftpmaster.internal/ubuntu plucky/universe arm64 liblzf1 arm64 3.6-4 [7426 B] 182s Get:96 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3.12-dev arm64 3.12.7-3 [5565 kB] 182s Get:97 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3-dev arm64 3.12.6-0ubuntu1 [10.2 kB] 182s Get:98 http://ftpmaster.internal/ubuntu plucky/main arm64 libpython3-all-dev arm64 3.12.6-0ubuntu1 [916 B] 182s Get:99 http://ftpmaster.internal/ubuntu plucky/universe arm64 libssu0 arm64 1.4-3build2 [147 kB] 183s Get:100 http://ftpmaster.internal/ubuntu plucky/universe arm64 libssu-dev arm64 1.4-3build2 [8294 B] 183s Get:101 http://ftpmaster.internal/ubuntu plucky/universe arm64 libssw0 arm64 1.1-15 [21.8 kB] 183s Get:102 http://ftpmaster.internal/ubuntu plucky/universe arm64 pybuild-plugin-autopkgtest all 6.20241024 [1746 B] 183s Get:103 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all arm64 3.12.6-0ubuntu1 [886 B] 183s Get:104 http://ftpmaster.internal/ubuntu plucky/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] 183s Get:105 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dev arm64 3.12.6-0ubuntu1 [26.7 kB] 183s Get:106 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-all-dev arm64 3.12.6-0ubuntu1 [908 B] 183s Get:107 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-numpy arm64 1:1.26.4+ds-11ubuntu1 [4149 kB] 183s Get:108 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py-serial arm64 3.11.0-8ubuntu1 [1449 kB] 183s Get:109 http://ftpmaster.internal/ubuntu plucky-proposed/universe arm64 python3-h5py all 3.11.0-8ubuntu1 [7982 B] 183s Get:110 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-colorama all 0.4.6-4 [32.1 kB] 183s Get:111 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-click all 8.1.7-2 [79.5 kB] 183s Get:112 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-dateutil all 2.9.0-3 [80.2 kB] 183s Get:113 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-tz all 2024.1-2 [31.4 kB] 183s Get:114 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas-lib arm64 2.2.3+dfsg-5ubuntu1 [6921 kB] 184s Get:115 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pandas all 2.2.3+dfsg-5ubuntu1 [3112 kB] 184s Get:116 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 184s Get:117 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-scipy arm64 1.13.1-5ubuntu1 [19.1 MB] 184s Get:118 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-biom-format arm64 2.1.16-1 [137 kB] 184s Get:119 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-hdmedians arm64 0.14.2-5.1build2 [180 kB] 184s Get:120 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 184s Get:121 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-natsort all 8.0.2-2 [33.8 kB] 184s Get:122 http://ftpmaster.internal/ubuntu plucky/main arm64 python3-packaging all 24.2-1 [51.5 kB] 184s Get:123 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-patsy all 1.0.1-1 [180 kB] 184s Get:124 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels-lib arm64 0.14.4+dfsg-1build1 [2512 kB] 184s Get:125 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-statsmodels all 0.14.4+dfsg-1build1 [5011 kB] 185s Get:126 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-skbio arm64 0.6.2-3 [1391 kB] 185s Get:127 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-iow arm64 1.0.7-1 [388 kB] 185s Get:128 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 185s Get:129 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-pytest all 8.3.3-1 [251 kB] 185s Get:130 http://ftpmaster.internal/ubuntu plucky/universe arm64 python3-unifrac arm64 1.3-4 [152 kB] 185s Get:131 http://ftpmaster.internal/ubuntu plucky/main arm64 dh-exec arm64 0.30 [25.6 kB] 185s Fetched 138 MB in 6s (22.3 MB/s) 185s Selecting previously unselected package m4. 185s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80002 files and directories currently installed.) 185s Preparing to unpack .../000-m4_1.4.19-4build1_arm64.deb ... 185s Unpacking m4 (1.4.19-4build1) ... 185s Selecting previously unselected package autoconf. 185s Preparing to unpack .../001-autoconf_2.72-3_all.deb ... 185s Unpacking autoconf (2.72-3) ... 185s Selecting previously unselected package autotools-dev. 186s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 186s Unpacking autotools-dev (20220109.1) ... 186s Selecting previously unselected package automake. 186s Preparing to unpack .../003-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 186s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 186s Selecting previously unselected package autopoint. 186s Preparing to unpack .../004-autopoint_0.22.5-2_all.deb ... 186s Unpacking autopoint (0.22.5-2) ... 186s Selecting previously unselected package libisl23:arm64. 186s Preparing to unpack .../005-libisl23_0.27-1_arm64.deb ... 186s Unpacking libisl23:arm64 (0.27-1) ... 186s Selecting previously unselected package libmpc3:arm64. 186s Preparing to unpack .../006-libmpc3_1.3.1-1build2_arm64.deb ... 186s Unpacking libmpc3:arm64 (1.3.1-1build2) ... 186s Selecting previously unselected package cpp-14-aarch64-linux-gnu. 186s Preparing to unpack .../007-cpp-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 186s Unpacking cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 186s Selecting previously unselected package cpp-14. 186s Preparing to unpack .../008-cpp-14_14.2.0-8ubuntu1_arm64.deb ... 186s Unpacking cpp-14 (14.2.0-8ubuntu1) ... 186s Selecting previously unselected package cpp-aarch64-linux-gnu. 186s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 186s Unpacking cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 186s Selecting previously unselected package cpp. 186s Preparing to unpack .../010-cpp_4%3a14.1.0-2ubuntu1_arm64.deb ... 186s Unpacking cpp (4:14.1.0-2ubuntu1) ... 186s Selecting previously unselected package libcc1-0:arm64. 186s Preparing to unpack .../011-libcc1-0_14.2.0-8ubuntu1_arm64.deb ... 186s Unpacking libcc1-0:arm64 (14.2.0-8ubuntu1) ... 186s Selecting previously unselected package libgomp1:arm64. 186s Preparing to unpack .../012-libgomp1_14.2.0-8ubuntu1_arm64.deb ... 186s Unpacking libgomp1:arm64 (14.2.0-8ubuntu1) ... 186s Selecting previously unselected package libitm1:arm64. 186s Preparing to unpack .../013-libitm1_14.2.0-8ubuntu1_arm64.deb ... 186s Unpacking libitm1:arm64 (14.2.0-8ubuntu1) ... 186s Selecting previously unselected package libasan8:arm64. 186s Preparing to unpack .../014-libasan8_14.2.0-8ubuntu1_arm64.deb ... 186s Unpacking libasan8:arm64 (14.2.0-8ubuntu1) ... 186s Selecting previously unselected package liblsan0:arm64. 186s Preparing to unpack .../015-liblsan0_14.2.0-8ubuntu1_arm64.deb ... 186s Unpacking liblsan0:arm64 (14.2.0-8ubuntu1) ... 186s Selecting previously unselected package libtsan2:arm64. 186s Preparing to unpack .../016-libtsan2_14.2.0-8ubuntu1_arm64.deb ... 186s Unpacking libtsan2:arm64 (14.2.0-8ubuntu1) ... 186s Selecting previously unselected package libubsan1:arm64. 186s Preparing to unpack .../017-libubsan1_14.2.0-8ubuntu1_arm64.deb ... 186s Unpacking libubsan1:arm64 (14.2.0-8ubuntu1) ... 186s Selecting previously unselected package libhwasan0:arm64. 186s Preparing to unpack .../018-libhwasan0_14.2.0-8ubuntu1_arm64.deb ... 186s Unpacking libhwasan0:arm64 (14.2.0-8ubuntu1) ... 186s Selecting previously unselected package libgcc-14-dev:arm64. 186s Preparing to unpack .../019-libgcc-14-dev_14.2.0-8ubuntu1_arm64.deb ... 186s Unpacking libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 187s Selecting previously unselected package gcc-14-aarch64-linux-gnu. 187s Preparing to unpack .../020-gcc-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 187s Unpacking gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 187s Selecting previously unselected package gcc-14. 187s Preparing to unpack .../021-gcc-14_14.2.0-8ubuntu1_arm64.deb ... 187s Unpacking gcc-14 (14.2.0-8ubuntu1) ... 187s Selecting previously unselected package gcc-aarch64-linux-gnu. 187s Preparing to unpack .../022-gcc-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 187s Unpacking gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 187s Selecting previously unselected package gcc. 187s Preparing to unpack .../023-gcc_4%3a14.1.0-2ubuntu1_arm64.deb ... 187s Unpacking gcc (4:14.1.0-2ubuntu1) ... 187s Selecting previously unselected package libstdc++-14-dev:arm64. 187s Preparing to unpack .../024-libstdc++-14-dev_14.2.0-8ubuntu1_arm64.deb ... 187s Unpacking libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ... 187s Selecting previously unselected package g++-14-aarch64-linux-gnu. 187s Preparing to unpack .../025-g++-14-aarch64-linux-gnu_14.2.0-8ubuntu1_arm64.deb ... 187s Unpacking g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 188s Selecting previously unselected package g++-14. 188s Preparing to unpack .../026-g++-14_14.2.0-8ubuntu1_arm64.deb ... 188s Unpacking g++-14 (14.2.0-8ubuntu1) ... 188s Selecting previously unselected package g++-aarch64-linux-gnu. 188s Preparing to unpack .../027-g++-aarch64-linux-gnu_4%3a14.1.0-2ubuntu1_arm64.deb ... 188s Unpacking g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 188s Selecting previously unselected package g++. 188s Preparing to unpack .../028-g++_4%3a14.1.0-2ubuntu1_arm64.deb ... 188s Unpacking g++ (4:14.1.0-2ubuntu1) ... 188s Selecting previously unselected package build-essential. 188s Preparing to unpack .../029-build-essential_12.10ubuntu1_arm64.deb ... 188s Unpacking build-essential (12.10ubuntu1) ... 188s Selecting previously unselected package cython3. 188s Preparing to unpack .../030-cython3_3.0.11+dfsg-1ubuntu2_arm64.deb ... 188s Unpacking cython3 (3.0.11+dfsg-1ubuntu2) ... 188s Selecting previously unselected package libdebhelper-perl. 188s Preparing to unpack .../031-libdebhelper-perl_13.20ubuntu1_all.deb ... 188s Unpacking libdebhelper-perl (13.20ubuntu1) ... 188s Selecting previously unselected package libtool. 188s Preparing to unpack .../032-libtool_2.4.7-8_all.deb ... 188s Unpacking libtool (2.4.7-8) ... 188s Selecting previously unselected package dh-autoreconf. 188s Preparing to unpack .../033-dh-autoreconf_20_all.deb ... 188s Unpacking dh-autoreconf (20) ... 188s Selecting previously unselected package libarchive-zip-perl. 188s Preparing to unpack .../034-libarchive-zip-perl_1.68-1_all.deb ... 188s Unpacking libarchive-zip-perl (1.68-1) ... 188s Selecting previously unselected package libfile-stripnondeterminism-perl. 188s Preparing to unpack .../035-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... 188s Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... 188s Selecting previously unselected package dh-strip-nondeterminism. 188s Preparing to unpack .../036-dh-strip-nondeterminism_1.14.0-1_all.deb ... 188s Unpacking dh-strip-nondeterminism (1.14.0-1) ... 188s Selecting previously unselected package debugedit. 188s Preparing to unpack .../037-debugedit_1%3a5.1-1_arm64.deb ... 188s Unpacking debugedit (1:5.1-1) ... 188s Selecting previously unselected package dwz. 188s Preparing to unpack .../038-dwz_0.15-1build6_arm64.deb ... 188s Unpacking dwz (0.15-1build6) ... 188s Selecting previously unselected package gettext. 188s Preparing to unpack .../039-gettext_0.22.5-2_arm64.deb ... 188s Unpacking gettext (0.22.5-2) ... 188s Selecting previously unselected package intltool-debian. 188s Preparing to unpack .../040-intltool-debian_0.35.0+20060710.6_all.deb ... 188s Unpacking intltool-debian (0.35.0+20060710.6) ... 188s Selecting previously unselected package po-debconf. 188s Preparing to unpack .../041-po-debconf_1.0.21+nmu1_all.deb ... 188s Unpacking po-debconf (1.0.21+nmu1) ... 188s Selecting previously unselected package debhelper. 188s Preparing to unpack .../042-debhelper_13.20ubuntu1_all.deb ... 188s Unpacking debhelper (13.20ubuntu1) ... 188s Selecting previously unselected package dh-python. 188s Preparing to unpack .../043-dh-python_6.20241024_all.deb ... 188s Unpacking dh-python (6.20241024) ... 188s Selecting previously unselected package hdf5-helpers. 188s Preparing to unpack .../044-hdf5-helpers_1.10.10+repack-4ubuntu3_arm64.deb ... 188s Unpacking hdf5-helpers (1.10.10+repack-4ubuntu3) ... 188s Selecting previously unselected package libaec0:arm64. 188s Preparing to unpack .../045-libaec0_1.1.3-1_arm64.deb ... 188s Unpacking libaec0:arm64 (1.1.3-1) ... 188s Selecting previously unselected package libblas3:arm64. 188s Preparing to unpack .../046-libblas3_3.12.0-3build2_arm64.deb ... 188s Unpacking libblas3:arm64 (3.12.0-3build2) ... 188s Selecting previously unselected package libbrotli-dev:arm64. 188s Preparing to unpack .../047-libbrotli-dev_1.1.0-2build3_arm64.deb ... 188s Unpacking libbrotli-dev:arm64 (1.1.0-2build3) ... 188s Selecting previously unselected package libidn2-dev:arm64. 188s Preparing to unpack .../048-libidn2-dev_2.3.7-2build2_arm64.deb ... 188s Unpacking libidn2-dev:arm64 (2.3.7-2build2) ... 188s Selecting previously unselected package libpkgconf3:arm64. 188s Preparing to unpack .../049-libpkgconf3_1.8.1-4_arm64.deb ... 188s Unpacking libpkgconf3:arm64 (1.8.1-4) ... 189s Selecting previously unselected package pkgconf-bin. 189s Preparing to unpack .../050-pkgconf-bin_1.8.1-4_arm64.deb ... 189s Unpacking pkgconf-bin (1.8.1-4) ... 189s Selecting previously unselected package pkgconf:arm64. 189s Preparing to unpack .../051-pkgconf_1.8.1-4_arm64.deb ... 189s Unpacking pkgconf:arm64 (1.8.1-4) ... 189s Selecting previously unselected package libnghttp2-dev:arm64. 189s Preparing to unpack .../052-libnghttp2-dev_1.64.0-1_arm64.deb ... 189s Unpacking libnghttp2-dev:arm64 (1.64.0-1) ... 189s Selecting previously unselected package libpsl-dev:arm64. 189s Preparing to unpack .../053-libpsl-dev_0.21.2-1.1build1_arm64.deb ... 189s Unpacking libpsl-dev:arm64 (0.21.2-1.1build1) ... 189s Selecting previously unselected package libgmpxx4ldbl:arm64. 189s Preparing to unpack .../054-libgmpxx4ldbl_2%3a6.3.0+dfsg-2ubuntu7_arm64.deb ... 189s Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 189s Selecting previously unselected package libgmp-dev:arm64. 189s Preparing to unpack .../055-libgmp-dev_2%3a6.3.0+dfsg-2ubuntu7_arm64.deb ... 189s Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 189s Selecting previously unselected package libevent-2.1-7t64:arm64. 189s Preparing to unpack .../056-libevent-2.1-7t64_2.1.12-stable-10_arm64.deb ... 189s Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 189s Selecting previously unselected package libunbound8:arm64. 189s Preparing to unpack .../057-libunbound8_1.20.0-1ubuntu2.1_arm64.deb ... 189s Unpacking libunbound8:arm64 (1.20.0-1ubuntu2.1) ... 189s Selecting previously unselected package libgnutls-dane0t64:arm64. 189s Preparing to unpack .../058-libgnutls-dane0t64_3.8.8-2ubuntu1_arm64.deb ... 189s Unpacking libgnutls-dane0t64:arm64 (3.8.8-2ubuntu1) ... 189s Selecting previously unselected package libgnutls-openssl27t64:arm64. 189s Preparing to unpack .../059-libgnutls-openssl27t64_3.8.8-2ubuntu1_arm64.deb ... 189s Unpacking libgnutls-openssl27t64:arm64 (3.8.8-2ubuntu1) ... 189s Selecting previously unselected package libp11-kit-dev:arm64. 189s Preparing to unpack .../060-libp11-kit-dev_0.25.5-2ubuntu1_arm64.deb ... 189s Unpacking libp11-kit-dev:arm64 (0.25.5-2ubuntu1) ... 189s Selecting previously unselected package libtasn1-6-dev:arm64. 189s Preparing to unpack .../061-libtasn1-6-dev_4.19.0-3build1_arm64.deb ... 189s Unpacking libtasn1-6-dev:arm64 (4.19.0-3build1) ... 189s Selecting previously unselected package nettle-dev:arm64. 189s Preparing to unpack .../062-nettle-dev_3.10-1_arm64.deb ... 189s Unpacking nettle-dev:arm64 (3.10-1) ... 189s Selecting previously unselected package libgnutls28-dev:arm64. 189s Preparing to unpack .../063-libgnutls28-dev_3.8.8-2ubuntu1_arm64.deb ... 189s Unpacking libgnutls28-dev:arm64 (3.8.8-2ubuntu1) ... 189s Selecting previously unselected package zlib1g-dev:arm64. 189s Preparing to unpack .../064-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_arm64.deb ... 189s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 189s Selecting previously unselected package librtmp-dev:arm64. 189s Preparing to unpack .../065-librtmp-dev_2.4+20151223.gitfa8646d.1-2build7_arm64.deb ... 189s Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 189s Selecting previously unselected package libssl-dev:arm64. 189s Preparing to unpack .../066-libssl-dev_3.3.1-2ubuntu2_arm64.deb ... 189s Unpacking libssl-dev:arm64 (3.3.1-2ubuntu2) ... 189s Selecting previously unselected package libssh2-1-dev:arm64. 189s Preparing to unpack .../067-libssh2-1-dev_1.11.1-1_arm64.deb ... 189s Unpacking libssh2-1-dev:arm64 (1.11.1-1) ... 189s Selecting previously unselected package libzstd-dev:arm64. 189s Preparing to unpack .../068-libzstd-dev_1.5.6+dfsg-1_arm64.deb ... 189s Unpacking libzstd-dev:arm64 (1.5.6+dfsg-1) ... 189s Selecting previously unselected package libcurl4-openssl-dev:arm64. 189s Preparing to unpack .../069-libcurl4-openssl-dev_8.9.1-2ubuntu2_arm64.deb ... 189s Unpacking libcurl4-openssl-dev:arm64 (8.9.1-2ubuntu2) ... 189s Selecting previously unselected package libexpat1-dev:arm64. 189s Preparing to unpack .../070-libexpat1-dev_2.6.4-1_arm64.deb ... 189s Unpacking libexpat1-dev:arm64 (2.6.4-1) ... 189s Selecting previously unselected package libgfortran5:arm64. 189s Preparing to unpack .../071-libgfortran5_14.2.0-8ubuntu1_arm64.deb ... 189s Unpacking libgfortran5:arm64 (14.2.0-8ubuntu1) ... 189s Selecting previously unselected package libsz2:arm64. 189s Preparing to unpack .../072-libsz2_1.1.3-1_arm64.deb ... 189s Unpacking libsz2:arm64 (1.1.3-1) ... 189s Selecting previously unselected package libhdf5-103-1t64:arm64. 189s Preparing to unpack .../073-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 189s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 190s Selecting previously unselected package libhdf5-cpp-103-1t64:arm64. 190s Preparing to unpack .../074-libhdf5-cpp-103-1t64_1.10.10+repack-4ubuntu3_arm64.deb ... 190s Unpacking libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 190s Selecting previously unselected package libhdf5-fortran-102t64:arm64. 190s Preparing to unpack .../075-libhdf5-fortran-102t64_1.10.10+repack-4ubuntu3_arm64.deb ... 190s Unpacking libhdf5-fortran-102t64:arm64 (1.10.10+repack-4ubuntu3) ... 190s Selecting previously unselected package libhdf5-hl-100t64:arm64. 190s Preparing to unpack .../076-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 190s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 190s Selecting previously unselected package libhdf5-hl-fortran-100t64:arm64. 190s Preparing to unpack .../077-libhdf5-hl-fortran-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 190s Unpacking libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 190s Selecting previously unselected package libhdf5-hl-cpp-100t64:arm64. 190s Preparing to unpack .../078-libhdf5-hl-cpp-100t64_1.10.10+repack-4ubuntu3_arm64.deb ... 190s Unpacking libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 190s Selecting previously unselected package libjpeg-turbo8:arm64. 190s Preparing to unpack .../079-libjpeg-turbo8_2.1.5-2ubuntu2_arm64.deb ... 190s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 190s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 190s Preparing to unpack .../080-libjpeg-turbo8-dev_2.1.5-2ubuntu2_arm64.deb ... 190s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 190s Selecting previously unselected package libjpeg8:arm64. 190s Preparing to unpack .../081-libjpeg8_8c-2ubuntu11_arm64.deb ... 190s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 190s Selecting previously unselected package libjpeg8-dev:arm64. 190s Preparing to unpack .../082-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 190s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 190s Selecting previously unselected package libjpeg-dev:arm64. 190s Preparing to unpack .../083-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 190s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 190s Selecting previously unselected package libaec-dev:arm64. 190s Preparing to unpack .../084-libaec-dev_1.1.3-1_arm64.deb ... 190s Unpacking libaec-dev:arm64 (1.1.3-1) ... 190s Selecting previously unselected package libhdf5-dev. 190s Preparing to unpack .../085-libhdf5-dev_1.10.10+repack-4ubuntu3_arm64.deb ... 190s Unpacking libhdf5-dev (1.10.10+repack-4ubuntu3) ... 190s Selecting previously unselected package libjs-jquery. 190s Preparing to unpack .../086-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 190s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 190s Selecting previously unselected package libjs-underscore. 190s Preparing to unpack .../087-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 190s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 190s Selecting previously unselected package libjs-sphinxdoc. 190s Preparing to unpack .../088-libjs-sphinxdoc_7.4.7-4_all.deb ... 190s Unpacking libjs-sphinxdoc (7.4.7-4) ... 190s Selecting previously unselected package liblapack3:arm64. 190s Preparing to unpack .../089-liblapack3_3.12.0-3build2_arm64.deb ... 190s Unpacking liblapack3:arm64 (3.12.0-3build2) ... 190s Selecting previously unselected package libtmglib3:arm64. 190s Preparing to unpack .../090-libtmglib3_3.12.0-3build2_arm64.deb ... 190s Unpacking libtmglib3:arm64 (3.12.0-3build2) ... 190s Selecting previously unselected package liblapacke:arm64. 190s Preparing to unpack .../091-liblapacke_3.12.0-3build2_arm64.deb ... 190s Unpacking liblapacke:arm64 (3.12.0-3build2) ... 190s Selecting previously unselected package liblbfgsb0:arm64. 190s Preparing to unpack .../092-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 190s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 190s Selecting previously unselected package liblzf1:arm64. 190s Preparing to unpack .../093-liblzf1_3.6-4_arm64.deb ... 190s Unpacking liblzf1:arm64 (3.6-4) ... 190s Selecting previously unselected package libpython3.12-dev:arm64. 190s Preparing to unpack .../094-libpython3.12-dev_3.12.7-3_arm64.deb ... 190s Unpacking libpython3.12-dev:arm64 (3.12.7-3) ... 191s Selecting previously unselected package libpython3-dev:arm64. 191s Preparing to unpack .../095-libpython3-dev_3.12.6-0ubuntu1_arm64.deb ... 191s Unpacking libpython3-dev:arm64 (3.12.6-0ubuntu1) ... 191s Selecting previously unselected package libpython3-all-dev:arm64. 191s Preparing to unpack .../096-libpython3-all-dev_3.12.6-0ubuntu1_arm64.deb ... 191s Unpacking libpython3-all-dev:arm64 (3.12.6-0ubuntu1) ... 191s Selecting previously unselected package libssu0:arm64. 191s Preparing to unpack .../097-libssu0_1.4-3build2_arm64.deb ... 191s Unpacking libssu0:arm64 (1.4-3build2) ... 191s Selecting previously unselected package libssu-dev:arm64. 191s Preparing to unpack .../098-libssu-dev_1.4-3build2_arm64.deb ... 191s Unpacking libssu-dev:arm64 (1.4-3build2) ... 191s Selecting previously unselected package libssw0:arm64. 191s Preparing to unpack .../099-libssw0_1.1-15_arm64.deb ... 191s Unpacking libssw0:arm64 (1.1-15) ... 191s Selecting previously unselected package pybuild-plugin-autopkgtest. 191s Preparing to unpack .../100-pybuild-plugin-autopkgtest_6.20241024_all.deb ... 191s Unpacking pybuild-plugin-autopkgtest (6.20241024) ... 191s Selecting previously unselected package python3-all. 191s Preparing to unpack .../101-python3-all_3.12.6-0ubuntu1_arm64.deb ... 191s Unpacking python3-all (3.12.6-0ubuntu1) ... 191s Selecting previously unselected package python3.12-dev. 191s Preparing to unpack .../102-python3.12-dev_3.12.7-3_arm64.deb ... 191s Unpacking python3.12-dev (3.12.7-3) ... 191s Selecting previously unselected package python3-dev. 191s Preparing to unpack .../103-python3-dev_3.12.6-0ubuntu1_arm64.deb ... 191s Unpacking python3-dev (3.12.6-0ubuntu1) ... 191s Selecting previously unselected package python3-all-dev. 191s Preparing to unpack .../104-python3-all-dev_3.12.6-0ubuntu1_arm64.deb ... 191s Unpacking python3-all-dev (3.12.6-0ubuntu1) ... 191s Selecting previously unselected package python3-numpy. 191s Preparing to unpack .../105-python3-numpy_1%3a1.26.4+ds-11ubuntu1_arm64.deb ... 191s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 191s Selecting previously unselected package python3-h5py-serial. 191s Preparing to unpack .../106-python3-h5py-serial_3.11.0-8ubuntu1_arm64.deb ... 191s Unpacking python3-h5py-serial (3.11.0-8ubuntu1) ... 191s Selecting previously unselected package python3-h5py. 191s Preparing to unpack .../107-python3-h5py_3.11.0-8ubuntu1_all.deb ... 191s Unpacking python3-h5py (3.11.0-8ubuntu1) ... 191s Selecting previously unselected package python3-colorama. 191s Preparing to unpack .../108-python3-colorama_0.4.6-4_all.deb ... 191s Unpacking python3-colorama (0.4.6-4) ... 191s Selecting previously unselected package python3-click. 191s Preparing to unpack .../109-python3-click_8.1.7-2_all.deb ... 191s Unpacking python3-click (8.1.7-2) ... 191s Selecting previously unselected package python3-dateutil. 191s Preparing to unpack .../110-python3-dateutil_2.9.0-3_all.deb ... 191s Unpacking python3-dateutil (2.9.0-3) ... 191s Selecting previously unselected package python3-tz. 191s Preparing to unpack .../111-python3-tz_2024.1-2_all.deb ... 191s Unpacking python3-tz (2024.1-2) ... 191s Selecting previously unselected package python3-pandas-lib:arm64. 191s Preparing to unpack .../112-python3-pandas-lib_2.2.3+dfsg-5ubuntu1_arm64.deb ... 191s Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5ubuntu1) ... 192s Selecting previously unselected package python3-pandas. 192s Preparing to unpack .../113-python3-pandas_2.2.3+dfsg-5ubuntu1_all.deb ... 192s Unpacking python3-pandas (2.2.3+dfsg-5ubuntu1) ... 192s Selecting previously unselected package python3-decorator. 192s Preparing to unpack .../114-python3-decorator_5.1.1-5_all.deb ... 192s Unpacking python3-decorator (5.1.1-5) ... 192s Selecting previously unselected package python3-scipy. 192s Preparing to unpack .../115-python3-scipy_1.13.1-5ubuntu1_arm64.deb ... 192s Unpacking python3-scipy (1.13.1-5ubuntu1) ... 192s Selecting previously unselected package python3-biom-format. 193s Preparing to unpack .../116-python3-biom-format_2.1.16-1_arm64.deb ... 193s Unpacking python3-biom-format (2.1.16-1) ... 193s Selecting previously unselected package python3-hdmedians. 193s Preparing to unpack .../117-python3-hdmedians_0.14.2-5.1build2_arm64.deb ... 193s Unpacking python3-hdmedians (0.14.2-5.1build2) ... 193s Selecting previously unselected package python3-iniconfig. 193s Preparing to unpack .../118-python3-iniconfig_1.1.1-2_all.deb ... 193s Unpacking python3-iniconfig (1.1.1-2) ... 193s Selecting previously unselected package python3-natsort. 193s Preparing to unpack .../119-python3-natsort_8.0.2-2_all.deb ... 193s Unpacking python3-natsort (8.0.2-2) ... 193s Selecting previously unselected package python3-packaging. 193s Preparing to unpack .../120-python3-packaging_24.2-1_all.deb ... 193s Unpacking python3-packaging (24.2-1) ... 193s Selecting previously unselected package python3-patsy. 193s Preparing to unpack .../121-python3-patsy_1.0.1-1_all.deb ... 193s Unpacking python3-patsy (1.0.1-1) ... 193s Selecting previously unselected package python3-statsmodels-lib:arm64. 193s Preparing to unpack .../122-python3-statsmodels-lib_0.14.4+dfsg-1build1_arm64.deb ... 193s Unpacking python3-statsmodels-lib:arm64 (0.14.4+dfsg-1build1) ... 193s Selecting previously unselected package python3-statsmodels. 193s Preparing to unpack .../123-python3-statsmodels_0.14.4+dfsg-1build1_all.deb ... 193s Unpacking python3-statsmodels (0.14.4+dfsg-1build1) ... 193s Selecting previously unselected package python3-skbio. 193s Preparing to unpack .../124-python3-skbio_0.6.2-3_arm64.deb ... 193s Unpacking python3-skbio (0.6.2-3) ... 193s Selecting previously unselected package python3-iow. 193s Preparing to unpack .../125-python3-iow_1.0.7-1_arm64.deb ... 193s Unpacking python3-iow (1.0.7-1) ... 193s Selecting previously unselected package python3-pluggy. 193s Preparing to unpack .../126-python3-pluggy_1.5.0-1_all.deb ... 193s Unpacking python3-pluggy (1.5.0-1) ... 193s Selecting previously unselected package python3-pytest. 193s Preparing to unpack .../127-python3-pytest_8.3.3-1_all.deb ... 193s Unpacking python3-pytest (8.3.3-1) ... 193s Selecting previously unselected package python3-unifrac. 193s Preparing to unpack .../128-python3-unifrac_1.3-4_arm64.deb ... 193s Unpacking python3-unifrac (1.3-4) ... 193s Selecting previously unselected package dh-exec. 193s Preparing to unpack .../129-dh-exec_0.30_arm64.deb ... 193s Unpacking dh-exec (0.30) ... 193s Selecting previously unselected package autopkgtest-satdep. 193s Preparing to unpack .../130-1-autopkgtest-satdep.deb ... 193s Unpacking autopkgtest-satdep (0) ... 193s Setting up dh-python (6.20241024) ... 194s Setting up libgnutls-openssl27t64:arm64 (3.8.8-2ubuntu1) ... 194s Setting up python3-iniconfig (1.1.1-2) ... 194s Setting up libzstd-dev:arm64 (1.5.6+dfsg-1) ... 194s Setting up hdf5-helpers (1.10.10+repack-4ubuntu3) ... 194s Setting up python3-colorama (0.4.6-4) ... 194s Setting up libarchive-zip-perl (1.68-1) ... 194s Setting up libdebhelper-perl (13.20ubuntu1) ... 194s Setting up m4 (1.4.19-4build1) ... 194s Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10) ... 194s Setting up python3-all (3.12.6-0ubuntu1) ... 194s Setting up libgomp1:arm64 (14.2.0-8ubuntu1) ... 194s Setting up python3-click (8.1.7-2) ... 194s Setting up libaec0:arm64 (1.1.3-1) ... 194s Setting up python3-tz (2024.1-2) ... 194s Setting up python3-natsort (8.0.2-2) ... 194s Setting up libpsl-dev:arm64 (0.21.2-1.1build1) ... 194s Setting up python3-decorator (5.1.1-5) ... 194s Setting up autotools-dev (20220109.1) ... 194s Setting up libblas3:arm64 (3.12.0-3build2) ... 194s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 194s Setting up python3-packaging (24.2-1) ... 194s Setting up libunbound8:arm64 (1.20.0-1ubuntu2.1) ... 194s Setting up libpkgconf3:arm64 (1.8.1-4) ... 194s Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 194s Setting up libexpat1-dev:arm64 (2.6.4-1) ... 194s Setting up libgnutls-dane0t64:arm64 (3.8.8-2ubuntu1) ... 194s Setting up liblzf1:arm64 (3.6-4) ... 194s Setting up libssl-dev:arm64 (3.3.1-2ubuntu2) ... 194s Setting up libmpc3:arm64 (1.3.1-1build2) ... 194s Setting up cython3 (3.0.11+dfsg-1ubuntu2) ... 195s Setting up autopoint (0.22.5-2) ... 195s Setting up pkgconf-bin (1.8.1-4) ... 195s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu2) ... 195s Setting up libidn2-dev:arm64 (2.3.7-2build2) ... 195s Setting up libgfortran5:arm64 (14.2.0-8ubuntu1) ... 195s Setting up autoconf (2.72-3) ... 195s Setting up python3-pluggy (1.5.0-1) ... 195s Setting up libubsan1:arm64 (14.2.0-8ubuntu1) ... 195s Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 195s Setting up dwz (0.15-1build6) ... 195s Setting up libhwasan0:arm64 (14.2.0-8ubuntu1) ... 195s Setting up libasan8:arm64 (14.2.0-8ubuntu1) ... 195s Setting up debugedit (1:5.1-1) ... 195s Setting up python3-dateutil (2.9.0-3) ... 196s Setting up libtsan2:arm64 (14.2.0-8ubuntu1) ... 196s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 196s Setting up libisl23:arm64 (0.27-1) ... 196s Setting up libtasn1-6-dev:arm64 (4.19.0-3build1) ... 196s Setting up libssw0:arm64 (1.1-15) ... 196s Setting up libcc1-0:arm64 (14.2.0-8ubuntu1) ... 196s Setting up libbrotli-dev:arm64 (1.1.0-2build3) ... 196s Setting up liblsan0:arm64 (14.2.0-8ubuntu1) ... 196s Setting up libp11-kit-dev:arm64 (0.25.5-2ubuntu1) ... 196s Setting up libsz2:arm64 (1.1.3-1) ... 196s Setting up libitm1:arm64 (14.2.0-8ubuntu1) ... 196s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 196s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 196s Setting up automake (1:1.16.5-1.3ubuntu1) ... 196s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 196s Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... 196s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu2) ... 196s Setting up liblapack3:arm64 (3.12.0-3build2) ... 196s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 196s Setting up gettext (0.22.5-2) ... 196s Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2ubuntu7) ... 196s Setting up nettle-dev:arm64 (3.10-1) ... 196s Setting up python3-pytest (8.3.3-1) ... 196s Setting up libaec-dev:arm64 (1.1.3-1) ... 196s Setting up libpython3.12-dev:arm64 (3.12.7-3) ... 196s Setting up pkgconf:arm64 (1.8.1-4) ... 196s Setting up intltool-debian (0.35.0+20060710.6) ... 196s Setting up libtmglib3:arm64 (3.12.0-3build2) ... 196s Setting up python3.12-dev (3.12.7-3) ... 196s Setting up libssh2-1-dev:arm64 (1.11.1-1) ... 196s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 198s Setting up libjs-sphinxdoc (7.4.7-4) ... 198s Setting up dh-strip-nondeterminism (1.14.0-1) ... 198s Setting up python3-hdmedians (0.14.2-5.1build2) ... 198s Setting up cpp-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 198s Setting up liblapacke:arm64 (3.12.0-3build2) ... 198s Setting up libgcc-14-dev:arm64 (14.2.0-8ubuntu1) ... 198s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 198s Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 198s Setting up libstdc++-14-dev:arm64 (14.2.0-8ubuntu1) ... 198s Setting up python3-statsmodels-lib:arm64 (0.14.4+dfsg-1build1) ... 198s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 198s Setting up libgnutls28-dev:arm64 (3.8.8-2ubuntu1) ... 198s Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 198s Setting up libnghttp2-dev:arm64 (1.64.0-1) ... 198s Setting up python3-scipy (1.13.1-5ubuntu1) ... 202s Setting up libpython3-dev:arm64 (3.12.6-0ubuntu1) ... 202s Setting up po-debconf (1.0.21+nmu1) ... 202s Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5ubuntu1) ... 202s Setting up libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-4ubuntu3) ... 202s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 202s Setting up python3-h5py-serial (3.11.0-8ubuntu1) ... 202s Setting up libhdf5-fortran-102t64:arm64 (1.10.10+repack-4ubuntu3) ... 202s Setting up python3-patsy (1.0.1-1) ... 202s Setting up cpp-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 202s Setting up python3-pandas (2.2.3+dfsg-5ubuntu1) ... 207s Setting up libpython3-all-dev:arm64 (3.12.6-0ubuntu1) ... 207s Setting up python3-dev (3.12.6-0ubuntu1) ... 207s Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2build7) ... 208s Setting up python3-h5py (3.11.0-8ubuntu1) ... 208s Setting up cpp-14 (14.2.0-8ubuntu1) ... 208s Setting up python3-statsmodels (0.14.4+dfsg-1build1) ... 210s Setting up cpp (4:14.1.0-2ubuntu1) ... 210s Setting up gcc-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 210s Setting up libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 210s Setting up python3-all-dev (3.12.6-0ubuntu1) ... 211s Setting up gcc-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 211s Setting up g++-14-aarch64-linux-gnu (14.2.0-8ubuntu1) ... 211s Setting up libssu0:arm64 (1.4-3build2) ... 211s Setting up libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-4ubuntu3) ... 211s Setting up gcc-14 (14.2.0-8ubuntu1) ... 211s Setting up python3-biom-format (2.1.16-1) ... 211s Setting up libcurl4-openssl-dev:arm64 (8.9.1-2ubuntu2) ... 211s Setting up python3-skbio (0.6.2-3) ... 211s Setting up libhdf5-dev (1.10.10+repack-4ubuntu3) ... 211s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 211s Setting up g++-aarch64-linux-gnu (4:14.1.0-2ubuntu1) ... 211s Setting up g++-14 (14.2.0-8ubuntu1) ... 211s Setting up python3-iow (1.0.7-1) ... 212s Setting up libssu-dev:arm64 (1.4-3build2) ... 212s Setting up libtool (2.4.7-8) ... 212s Setting up gcc (4:14.1.0-2ubuntu1) ... 212s Setting up python3-unifrac (1.3-4) ... 212s Setting up dh-autoreconf (20) ... 212s Setting up g++ (4:14.1.0-2ubuntu1) ... 212s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 212s Setting up build-essential (12.10ubuntu1) ... 212s Setting up debhelper (13.20ubuntu1) ... 212s Setting up dh-exec (0.30) ... 212s Setting up pybuild-plugin-autopkgtest (6.20241024) ... 212s Setting up autopkgtest-satdep (0) ... 212s Processing triggers for man-db (2.13.0-1) ... 213s Processing triggers for install-info (7.1.1-1) ... 214s Processing triggers for libc-bin (2.40-1ubuntu3) ... 220s (Reading database ... 91448 files and directories currently installed.) 220s Removing autopkgtest-satdep (0) ... 221s autopkgtest [20:01:36]: test pybuild-autopkgtest: pybuild-autopkgtest 221s autopkgtest [20:01:36]: test pybuild-autopkgtest: [----------------------- 221s pybuild-autopkgtest 221s I: pybuild base:311: cd /tmp/autopkgtest.wCxtrG/autopkgtest_tmp/build; python3.12 -m pytest --pyargs unifrac 223s ============================= test session starts ============================== 223s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 223s rootdir: /tmp/autopkgtest.wCxtrG/autopkgtest_tmp/build 223s plugins: typeguard-4.4.1 223s collected 49 items 223s 228s tests/test_api.py ........................................ [ 81%] 228s tests/test_methods.py ......... [100%] 228s 228s =============================== warnings summary =============================== 228s ../../../../usr/lib/python3/dist-packages/unifrac/__init__.py:9 228s /usr/lib/python3/dist-packages/unifrac/__init__.py:9: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 228s import pkg_resources 228s 228s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed 228s /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:814: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 228s self.assertAlmostEqual(actual[0], expected) 228s 228s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_root_not_observed 228s /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:820: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 228s self.assertAlmostEqual(actual[0], expected) 228s 228s tests/test_api.py::FaithPDEdgeCasesTests::test_faith_pd_zero_branches_omitted 228s /usr/lib/python3/dist-packages/unifrac/tests/test_api.py:711: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 228s self.assertAlmostEqual(actual[0], expected) 228s 228s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 228s ======================== 49 passed, 4 warnings in 6.74s ======================== 229s autopkgtest [20:01:44]: test pybuild-autopkgtest: -----------------------] 229s autopkgtest [20:01:44]: test pybuild-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 229s pybuild-autopkgtest PASS 230s autopkgtest [20:01:45]: @@@@@@@@@@@@@@@@@@@@ summary 230s pybuild-autopkgtest PASS 242s nova [W] Skipping flock in bos03-arm64 242s Creating nova instance adt-plucky-arm64-unifrac-20241118-195755-juju-7f2275-prod-proposed-migration-environment-20-e830dfc4-fc4f-4024-8343-d1302a655184 from image adt/ubuntu-plucky-arm64-server-20241117.img (UUID 346584db-208f-4446-ae16-5eaab5e37305)...